Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 161 of 320
Found at i:53071742 original size:93 final size:93
Alignment explanation
Indices: 53071573--53071743 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
53071563 GGATGGTTGA
* *
53071573 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTTGAGT
53071638 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** * *
53071666 GCATCCGAACTCGTTGAGTTGAGTTTGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAGCTCGTTGAG
* *
53071730 TTTAGTCTGAGTTC
65 TTGAGTCCGAGTTC
53071744 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:53075105 original size:47 final size:47
Alignment explanation
Indices: 53075039--53075668 Score: 873
Period size: 47 Copynumber: 13.1 Consensus size: 47
53075029 GAAATGATAG
*
53075039 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
53075086 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
53075133 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
53075182 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
53075229 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* ** * * *
53075276 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 --TA-AGGCCTAAT-A-GCC-GAT----G-T--GATGAATGTGAAAGTGTATATATGTGA
*
53075336 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
53075383 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
53075430 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
53075477 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
53075524 TAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
53075571 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
53075618 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
53075665 TAAG
1 TAAG
53075669 TCCCGAAGGG
Statistics
Matches: 533, Mismatches: 35, Indels: 30
0.89 0.06 0.05
Matches are distributed among these distances:
47 430 0.81
49 49 0.09
50 6 0.01
51 1 0.00
52 3 0.01
53 2 0.00
54 2 0.00
55 3 0.01
56 1 0.00
57 6 0.01
58 3 0.01
60 27 0.05
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:53075278 original size:30 final size:30
Alignment explanation
Indices: 53075244--53075336 Score: 79
Period size: 30 Copynumber: 3.1 Consensus size: 30
53075234 CCTAATAGCC
53075244 GATGTGATGAATGTGAAAGTGTATATGTGT
1 GATGTGATGAATGTGAAAGTGTATATGTGT
* **
53075274 GATGT-AT-ATGTGTGATAAG-GCCTA-ATAG-CC
1 GATGTGATGA-ATGTGA-AAGTG--TATAT-GTGT
53075304 GATGTGATGAATGTGAAAGTGTATATGTGT
1 GATGTGATGAATGTGAAAGTGTATATGTGT
53075334 GAT
1 GAT
53075337 AAGGCCTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 20
0.64 0.08 0.27
Matches are distributed among these distances:
28 1 0.02
29 11 0.23
30 23 0.49
31 11 0.23
32 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.31, T:0.34
Consensus pattern (30 bp):
GATGTGATGAATGTGAAAGTGTATATGTGT
Found at i:53075281 original size:13 final size:13
Alignment explanation
Indices: 53075263--53075289 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
53075253 AATGTGAAAG
53075263 TGTATATGTGTGA
1 TGTATATGTGTGA
53075276 TGTATATGTGTGA
1 TGTATATGTGTGA
53075289 T
1 T
53075290 AAGGCCTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (13 bp):
TGTATATGTGTGA
Found at i:53075285 original size:60 final size:60
Alignment explanation
Indices: 53075216--53075336 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
53075206 AATGTGAAAG
53075216 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
53075276 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
53075336 T
1 T
53075337 AAGGCCTAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.34
Consensus pattern (60 bp):
TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:53075298 original size:107 final size:107
Alignment explanation
Indices: 53075171--53075383 Score: 399
Period size: 107 Copynumber: 2.0 Consensus size: 107
53075161 TGAAAGTGTA
*
53075171 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
53075236 TAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATG
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATG
* *
53075278 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
53075343 TAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
53075384 AAGGCCTAAT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (107 bp):
TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATG
Found at i:53075843 original size:37 final size:37
Alignment explanation
Indices: 53075787--53075865 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
53075777 CCGAGCTCTA
* *
53075787 AAGACCCGATGACTACGTGT-GAGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
53075824 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
53075861 AAGAC
1 AAGAC
53075866 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 35 0.92
38 3 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:53077300 original size:20 final size:20
Alignment explanation
Indices: 53077275--53077314 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
53077265 GCTTAATGAG
53077275 TCTATTTTCATGTGGATTGA
1 TCTATTTTCATGTGGATTGA
53077295 TCTATTTTCATGTGGATTGA
1 TCTATTTTCATGTGGATTGA
53077315 ACAAAACAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (20 bp):
TCTATTTTCATGTGGATTGA
Found at i:53083875 original size:21 final size:21
Alignment explanation
Indices: 53083851--53083892 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
53083841 TCATCAGATC
* *
53083851 TACACTTTGAGGCATCGGGGG
1 TACACGTTGAGGAATCGGGGG
*
53083872 TACAGGTTGAGGAATCGGGGG
1 TACACGTTGAGGAATCGGGGG
53083893 AGGCGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.43, T:0.21
Consensus pattern (21 bp):
TACACGTTGAGGAATCGGGGG
Found at i:53085770 original size:29 final size:30
Alignment explanation
Indices: 53085727--53085785 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
53085717 ATTTAATACG
*
53085727 AACTTTGGCAAAATTACA-TTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
53085756 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
53085786 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:53085878 original size:12 final size:12
Alignment explanation
Indices: 53085861--53085886 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
53085851 TATGGCAACA
53085861 TCAAATTCACAC
1 TCAAATTCACAC
53085873 TCAAATTCACAC
1 TCAAATTCACAC
53085885 TC
1 TC
53085887 TAACATGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (12 bp):
TCAAATTCACAC
Found at i:53087746 original size:25 final size:25
Alignment explanation
Indices: 53087718--53087822 Score: 97
Period size: 25 Copynumber: 4.2 Consensus size: 25
53087708 TCTCTCTCTC
*
53087718 GAGCCATATAACGGGAAACTCATAT
1 GAGCCATATAACGGGAAGCTCATAT
* * *
53087743 GAGCCATGTAACGGGATGCTTAT-T
1 GAGCCATATAACGGGAAGCTCATAT
* * *
53087767 CGGGCTATATAACGGGAAGCTCATAA
1 -GAGCCATATAACGGGAAGCTCATAT
* * *
53087793 GAGCCATA-ATCAGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATAT
53087817 GAGCCA
1 GAGCCA
53087823 ATAGCAGGTA
Statistics
Matches: 62, Mismatches: 16, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
24 19 0.31
25 43 0.69
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATAT
Found at i:53087830 original size:24 final size:24
Alignment explanation
Indices: 53087781--53087836 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
53087771 CTATATAACG
*
53087781 GGAAGCTCATAAGAGCCATAATCA
1 GGAAGCTCATAAGAGCCATAAGCA
**
53087805 GGAAGCTCATGTGAGCCA-ATAGCA
1 GGAAGCTCATAAGAGCCATA-AGCA
*
53087829 GGTAGCTC
1 GGAAGCTC
53087837 TCAAAAGCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAAGCA
Found at i:53087928 original size:26 final size:26
Alignment explanation
Indices: 53087889--53087957 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
53087879 CCATATCGGG
*
53087889 AAGCTC-CGAAGAGCCATTAATCAGA
1 AAGCTCACAAAGAGCCATTAATCAGA
* * *
53087914 AAGCTCACAAAGAGCCTTTAATCTGG
1 AAGCTCACAAAGAGCCATTAATCAGA
53087940 AAGCTCACAAAGAGCCAT
1 AAGCTCACAAAGAGCCAT
53087958 ATATCGAGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 6 0.16
26 32 0.84
ACGTcount: A:0.39, C:0.25, G:0.19, T:0.17
Consensus pattern (26 bp):
AAGCTCACAAAGAGCCATTAATCAGA
Found at i:53090624 original size:20 final size:18
Alignment explanation
Indices: 53090577--53090683 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 18
53090567 CAAGATAAAC
53090577 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
53090594 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
53090614 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
53090633 ATTAAAATAAGTA-TT-AT
1 ATTAAATTAA-TATTTAAT
* *
53090650 ATTAAATTTAATATTGACCT
1 ATTAAA-TTAATATTTA-AT
*
53090670 ATTAAAATAATATT
1 ATTAAATTAATATT
53090684 CATTTTGGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
17 17 0.25
18 6 0.09
19 22 0.32
20 24 0.35
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:53094135 original size:24 final size:24
Alignment explanation
Indices: 53094084--53094135 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
53094074 GAACTCTACT
* **
53094084 TTTTTACCTTTTACGATTTAGTTT
1 TTTTTACCTTTTACGATTTAATCC
53094108 TTTTTACCTTTTACGATTTAATCC
1 TTTTTACCTTTTACGATTTAATCC
53094132 TTTT
1 TTTT
53094136 CACTTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.15, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTTTACCTTTTACGATTTAATCC
Found at i:53097194 original size:18 final size:19
Alignment explanation
Indices: 53097171--53097213 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
53097161 CAACTAAAAT
53097171 TTTTAATATTT-TTAT-ACA
1 TTTTAAT-TTTATTATCACA
53097189 TTTTAATTTTATTATGCACA
1 TTTTAATTTTATTAT-CACA
53097209 TTTTA
1 TTTTA
53097214 TTATCTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
20 8 0.36
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATTTTATTATCACA
Found at i:53099575 original size:11 final size:9
Alignment explanation
Indices: 53099533--53099592 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
53099523 GCCATCCTTC
53099533 TTTT-GTTT
1 TTTTAGTTT
53099541 TTTTAG-TT
1 TTTTAGTTT
* *
53099549 TTTAACTTT
1 TTTTAGTTT
53099558 TTTTAGTTT
1 TTTTAGTTT
53099567 TATTATAGTTAT
1 T-TT-TAGTT-T
53099579 TTTTAGTTT
1 TTTTAGTTT
53099588 TTTTA
1 TTTTA
53099593 AAAATTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 10 0.23
9 17 0.40
10 7 0.16
11 7 0.16
12 2 0.05
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (9 bp):
TTTTAGTTT
Found at i:53101671 original size:39 final size:40
Alignment explanation
Indices: 53101546--53101730 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
53101536 GCTACTCGTT
*
53101546 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
53101586 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
53101626 CCAATGCCTTCGGG-CTTAGCCGGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
53101665 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
53101706 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
53101731 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:53101690 original size:79 final size:80
Alignment explanation
Indices: 53101548--53101730 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
53101538 TACTCGTTCA
* *
53101548 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
53101613 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
53101628 AATGCCTTCGGG-CTTAGCCGGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
53101690 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
53101707 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
53101731 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 4 0.05
79 58 0.66
80 26 0.30
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:53105662 original size:13 final size:13
Alignment explanation
Indices: 53105644--53105676 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
53105634 TATAGAGTTA
53105644 CACGGGCTAAGGG
1 CACGGGCTAAGGG
53105657 CACGGGCTAAGGG
1 CACGGGCTAAGGG
*
53105670 CATGGGC
1 CACGGGC
53105677 GTGTCCTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.21, C:0.24, G:0.45, T:0.09
Consensus pattern (13 bp):
CACGGGCTAAGGG
Found at i:53107229 original size:68 final size:70
Alignment explanation
Indices: 53107157--53107286 Score: 167
Period size: 71 Copynumber: 1.9 Consensus size: 70
53107147 ATACTATGTA
* * * *
53107157 GTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CCATGTAGACAAGAGAGCTACGAGAGAG
1 GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGA-CACCATGTAGACAAGAGAGCTACGAGAGAG
53107219 ATAAAT
65 ATAAAT
* *
53107225 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGCGTGATT-CAAGGGAAGGACACCATGTAGACAAGAGAGCTACGAGA
53107287 CAAATTGGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
68 19 0.37
69 1 0.02
70 1 0.02
71 31 0.60
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGACACCATGTAGACAAGAGAGCTACGAGAGAGA
TAAAT
Found at i:53109195 original size:89 final size:91
Alignment explanation
Indices: 53108983--53109188 Score: 265
Period size: 89 Copynumber: 2.3 Consensus size: 91
53108973 CGCTAAAAAG
53108983 AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACAAGTTTACAAAAAAA
1 AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACAAG-TT--AAAAAAA
* * **
53109048 ATGTACAATACACTTGTGGCACCATTCTT
63 AGGAACAATACACCAGTGGCACCATTCTT
* * *
53109077 AATGTCTCCACAAAATAAAATATTATTTTTATATTTAAATT-AAAAAATCACA-TT-AAAAAAAG
1 AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACA-AGTTAAAAAAAAG
**
53109139 GAACAATACACCAGTGGTGCCATTCTT
65 GAACAATACACCAGTGGCACCATTCTT
*
53109166 AATGGCTTCACCAAATAAAATAT
1 AATGGCTCCACCAAATAAAATAT
53109189 GTTTTTTTTA
Statistics
Matches: 99, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
89 49 0.49
92 2 0.02
93 8 0.08
94 40 0.40
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (91 bp):
AATGGCTCCACCAAATAAAATATTATTTTTATATTTAAATTAAAAAAAACAAGTTAAAAAAAAGG
AACAATACACCAGTGGCACCATTCTT
Found at i:53113173 original size:14 final size:13
Alignment explanation
Indices: 53113140--53113180 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
53113130 TTTAAAACTC
53113140 CTTTAAAAGAAAA
1 CTTTAAAAGAAAA
*
53113153 C-TTAAAAGAAATT
1 CTTTAAAAGAAA-A
53113166 CTTTAAAAGAAAA
1 CTTTAAAAGAAAA
53113179 CT
1 CT
53113181 CAAAGAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 10 0.42
13 4 0.17
14 10 0.42
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (13 bp):
CTTTAAAAGAAAA
Found at i:53115939 original size:40 final size:41
Alignment explanation
Indices: 53115895--53115975 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
53115885 TTATAAATAG
*
53115895 CACTATGTGTGCGA-AATG-GAATAGCTTCAGCTATATGAGA
1 CACTAGGTGTGCGATAATGAG-ATAGCTTCAGCTATATGAGA
* * *
53115935 CACTAGGTGTGCGATACTGAGGTAGCTTCAGCTATTTGAGA
1 CACTAGGTGTGCGATAATGAGATAGCTTCAGCTATATGAGA
53115976 TGTCACTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 13 0.37
41 21 0.60
42 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (41 bp):
CACTAGGTGTGCGATAATGAGATAGCTTCAGCTATATGAGA
Found at i:53134155 original size:42 final size:41
Alignment explanation
Indices: 53133992--53134156 Score: 123
Period size: 42 Copynumber: 3.9 Consensus size: 41
53133982 AATCATACCA
** * * *
53133992 ATGCCATATCCCAGATATGGTCTTTTATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAACTCATATCG
* * * * * **
53134034 ATGCCAATAGCCTAGCTATAGTCTTACAAGATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAACTCATATCG
* * * * * *
53134076 ACGCCATGTCCCAGACATGGTCCTACACAAAATCTCATAGCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAA-CTCATATCG
*
53134118 ATGCCATATCCCAGATATGGTCTTATACGTAAACTCATA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAACTCATA
53134157 ACCCTAATAT
Statistics
Matches: 92, Mismatches: 28, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
41 16 0.17
42 57 0.62
43 19 0.21
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAACTCATATCG
Found at i:53136027 original size:13 final size:13
Alignment explanation
Indices: 53136009--53136034 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53135999 TTAATACTTA
53136009 ACTGAAAATTGTT
1 ACTGAAAATTGTT
53136022 ACTGAAAATTGTT
1 ACTGAAAATTGTT
53136035 GTTATAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ACTGAAAATTGTT
Found at i:53149212 original size:42 final size:41
Alignment explanation
Indices: 53149166--53149318 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 41
53149156 AATCATACCA
* **
53149166 ATGCCATATCCCAGATATGGTTTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-GAAATCTCATATCG
* *
53149208 ATGCCAATAGCGCA-ACTATGGTCTTACA-AAATTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACAGAAA-TCTCATATCG
* * * * *
53149250 ATGCCATGTCCCAGACATGGTCCTACACGAAACCTCAT-TAGG
1 ATGCCATATCCCAGATATGGTCTTACA-GAAATCTCATAT-CG
53149292 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
53149319 CGTAAACTCA
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
41 17 0.19
42 52 0.58
43 20 0.22
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAGAAATCTCATATCG
Found at i:53149319 original size:42 final size:42
Alignment explanation
Indices: 53149249--53149329 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
53149239 TTCTCATATC
*
53149249 GATGCCATGTCCCAGACATGGTCCTACACG-AAACCTCATTAG
1 GATGCCATATCCCAGACATGGTCCTACACGTAAA-CTCATTAG
* *
53149291 GATGCCATATCCCAGATATGGTCTTACACGTAAACTCAT
1 GATGCCATATCCCAGACATGGTCCTACACGTAAACTCAT
53149330 AACCCTAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 32 0.91
43 3 0.09
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (42 bp):
GATGCCATATCCCAGACATGGTCCTACACGTAAACTCATTAG
Found at i:53150144 original size:46 final size:46
Alignment explanation
Indices: 53150093--53150189 Score: 194
Period size: 46 Copynumber: 2.1 Consensus size: 46
53150083 GCTATGGTGT
53150093 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
1 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
53150139 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
1 CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
53150185 CTTGA
1 CTTGA
53150190 TTTTCCCTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (46 bp):
CTTGAAAATCTCGGCTATGGGAGGAAGAAGATGGACACAATTTTGA
Found at i:53153122 original size:44 final size:44
Alignment explanation
Indices: 53153041--53153176 Score: 123
Period size: 45 Copynumber: 3.0 Consensus size: 44
53153031 ACTAGCTCTC
53153041 ACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACATTG
1 ACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACATTG
* * *
53153085 ACATATCTCGTAGTCGATG-CATGTCCTAGACAT-GTCTTACACTG
1 ACATATC-CGTA-CCGATGCCATGTCCCAGACATGGTCTTACATTG
* * ** * *
53153129 GCTTACATTTGGAGGCCGATGCCTTGTCCCAGACATGGTCTTACATTG
1 AC--ATATCCGTA--CCGATGCCATGTCCCAGACATGGTCTTACATTG
53153177 GCTTTCATAA
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
44 18 0.25
45 19 0.26
46 14 0.19
47 12 0.16
48 10 0.14
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (44 bp):
ACATATCCGTACCGATGCCATGTCCCAGACATGGTCTTACATTG
Found at i:53153162 original size:92 final size:93
Alignment explanation
Indices: 53153052--53153221 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
53153042 CATATCCGTA
* *
53153052 CCGATGCCATGTCCCAGACATGGTCTTACATTGACATATC-T-CGTAGTCGATGCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACATTGAC-TATCATACGTAGCCGATGCATGTCCCAGA
53153115 CATGTCTTACACTGGCTTACATTTGGAGG
65 CATGTCTTACACTGGCTTACATTTGGAGG
* * * * *
53153144 CCGATGCCTTGTCCCAGACATGGTCTTACATTGGCTTTCATAATGTGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAT-ACGTAGCCGATGCATGTCCCAGA
53153209 CATGTCTTACACT
65 CATGTCTTACACT
53153222 AGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 3 0.04
92 34 0.50
94 31 0.46
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCATACGTAGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCTTACATTTGGAGG
Found at i:53153179 original size:48 final size:47
Alignment explanation
Indices: 53153052--53153219 Score: 161
Period size: 48 Copynumber: 3.6 Consensus size: 47
53153042 CATATCCGTA
*
53153052 CCGATGCCATGTCCCAGACATGGTCTTACATT-G---ACATATCTCGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATAT-T-GGAGG
* * *
53153098 TCGATGCATGTCCTAGACATGTCTTACACTGGCTTACAT-TTGGAGG
1 CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATATTGGAGG
* * * *
53153144 CCGATGCCTTGTCCCAGACATGGTCTTACATTGGCTTTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATATTGGAGG
53153192 CCGATGCATGTCCCAGACATGTCTTACA
1 CCGATGCATGTCCCAGACATGTCTTACA
53153220 CTAGCACACA
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
44 9 0.09
45 16 0.16
46 20 0.20
47 26 0.25
48 30 0.29
49 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATATTGGAGG
Found at i:53157472 original size:29 final size:29
Alignment explanation
Indices: 53157433--53157511 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
53157423 CTTAATAATC
*
53157433 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
53157463 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
53157492 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
53157512 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:53157558 original size:43 final size:43
Alignment explanation
Indices: 53157493--53157638 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
53157483 TGCATTTCAA
53157493 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
53157536 GCCCGCACACTTAGTGCAAATCTCACAACCGTGAACACATATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
53157579 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
53157622 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
53157639 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:53159542 original size:37 final size:37
Alignment explanation
Indices: 53159492--53159570 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
53159482 TTATTACGAA
* * *
53159492 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
53159529 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
53159566 GTCTT
1 GTCTT
53159571 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:53159792 original size:46 final size:47
Alignment explanation
Indices: 53159689--53159832 Score: 182
Period size: 47 Copynumber: 3.1 Consensus size: 47
53159679 CCCTTCGGGA
* * * * * * *
53159689 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
53159736 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
53159782 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
53159829 CTTA
1 CTTA
53159833 CTATCATTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 39 0.48
47 43 0.52
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53165068 original size:16 final size:16
Alignment explanation
Indices: 53165047--53165089 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
53165037 ATGTATCGGC
*
53165047 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
*
53165063 AAAAGCTAAAATGCCG
1 AAAAGCTGAAATGCCG
53165079 AAAAGCTGAAA
1 AAAAGCTGAAA
53165090 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:53165336 original size:28 final size:29
Alignment explanation
Indices: 53165300--53165414 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
53165290 GTGAGCATGA
* * **
53165300 ATATGAATGTGA-CTGGGCCTAATGATCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
53165328 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
53165357 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
53165386 ATATAAATATGA-TTGGGCTTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
53165414 A
1 A
53165415 AATATAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:53165375 original size:58 final size:57
Alignment explanation
Indices: 53165313--53165423 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
53165303 TGAATGTGAC
* * * *
53165313 TGGGCCTAATGATCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGAGCCATATAAATATGA-TTGGGCCTAAAGGGCCAAATACAGGTGATT
* * *
53165371 TGGGCCTAATGGGCCATATAAATATGATTGGGCTTAAAGGGCCAAATATAGGT
1 TGGGCCTAATGAGCCATATAAATATGATTGGGCCTAAAGGGCCAAATACAGGT
53165424 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGAGCCATATAAATATGATTGGGCCTAAAGGGCCAAATACAGGTGATT
Found at i:53166070 original size:17 final size:18
Alignment explanation
Indices: 53166048--53166081 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
53166038 TGCATGATTG
53166048 TTGAATG-ATGTTTTTTT
1 TTGAATGCATGTTTTTTT
*
53166065 TTGAATGCTTGTTTTTT
1 TTGAATGCATGTTTTTT
53166082 GTCGAGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.03, G:0.18, T:0.65
Consensus pattern (18 bp):
TTGAATGCATGTTTTTTT
Found at i:53169885 original size:6 final size:6
Alignment explanation
Indices: 53169866--53169953 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
53169856 AAGAAACATT
* *
53169866 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAGA ATCAG- GTGGCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
53169915 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
53169954 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:53169916 original size:31 final size:31
Alignment explanation
Indices: 53169875--53169953 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
53169865 TATCAGAACT
* **
53169875 AGAATTAGAATCAGAATCAGAATCAGGTGGC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
53169906 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
53169937 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
53169954 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:53169939 original size:25 final size:24
Alignment explanation
Indices: 53169881--53169950 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
53169871 AACTAGAATT
*
53169881 AGAATCAGAATCAGAATCAGGTGGC
1 AGAATCAGAATCAGAATCA-GTAGC
*
53169906 AGAATCAGAATCAGAATCAGTATC
1 AGAATCAGAATCAGAATCAGTAGC
*
53169930 AGGTAA-CAGAATCAAAATCAG
1 A-G-AATCAGAATCAGAATCAG
53169951 AATGTGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.10
25 34 0.85
26 2 0.05
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAGC
Found at i:53170168 original size:27 final size:28
Alignment explanation
Indices: 53170076--53170178 Score: 97
Period size: 27 Copynumber: 3.8 Consensus size: 28
53170066 GGCTACCAGA
** * *
53170076 ACAGATATTGTGATAGAGTCACCAG-AT
1 ACAGATATTGTGGCAAAGCCACCAGAAT
* *
53170103 ACAGATATTTTGGCAGAGCCACCA-AA-
1 ACAGATATTGTGGCAAAGCCACCAGAAT
*
53170129 ACAGATATTTGTGGCATAGCCACCAGAAT
1 ACAGATA-TTGTGGCAAAGCCACCAGAAT
*
53170158 A-AGATAATGTGGCAAAGCCAC
1 ACAGATATTGTGGCAAAGCCAC
53170179 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 7 0.11
29 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGATATTGTGGCAAAGCCACCAGAAT
Found at i:53170790 original size:27 final size:27
Alignment explanation
Indices: 53170742--53170964 Score: 270
Period size: 27 Copynumber: 8.3 Consensus size: 27
53170732 GGGGCAAAAT
* *
53170742 GGTAATTTTACCCCAC-GAGGGTATCTT-
1 GGTAATTCTACCCTACAG-GGGTAT-TTC
53170769 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
53170796 GATAATTCTACCTTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
53170823 AGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
53170850 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
53170877 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
53170904 GATAATTCTACCTTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
53170931 GGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
53170958 GGTAATT
1 GGTAATT
53170965 TCACAAACCA
Statistics
Matches: 165, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 162 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:53170981 original size:81 final size:81
Alignment explanation
Indices: 53170759--53171018 Score: 285
Period size: 81 Copynumber: 3.2 Consensus size: 81
53170749 TTACCCCACG
* * * *
53170759 AGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAGGGATATTTC-
1 AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
* *
53170823 AGTAATTCTACCCTAGA
66 A-TAATTCTACCATATA
* * * * * *
53170840 GGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCG
1 AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
*
53170905 ATAATTCTACCTTATA
66 ATAATTCTACCATATA
* *
53170921 AGGGTATTTTGGTAATTCTACCCTGCAGGGGTATTTCGGTAATT-T-CACAAACCAGGGGTATTT
1 AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-CATA-CAGGGGTATTT
* * *
53170984 TGATAATTTTA-CAAACTA
64 CGATAATTCTACCATA-TA
*
53171002 GGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATT
53171019 TTATTGATCG
Statistics
Matches: 151, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 5 0.03
81 144 0.95
82 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCG
ATAATTCTACCATATA
Found at i:53170991 original size:54 final size:54
Alignment explanation
Indices: 53170760--53170964 Score: 311
Period size: 54 Copynumber: 3.8 Consensus size: 54
53170750 TACCCCACGA
*
53170760 GGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
* ** * *
53170814 GGATATTTCAGTAATTCTACCCTAGAGGGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
* * *
53170868 GGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGATAATTCTACCTTATAA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
* *
53170922 GGGTATTTTGGTAATTCTACCCTGCAGGGGTATTTCGGTAATT
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATT
53170965 TCACAAACCA
Statistics
Matches: 134, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 134 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (54 bp):
GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTACAG
Found at i:53171020 original size:27 final size:27
Alignment explanation
Indices: 53170922--53171047 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
53170912 TACCTTATAA
* *
53170922 GGGTATTTTGGTAATTCTAC--CCTGCAG
1 GGGTATTTTGGTAATTTTACAAACT--AG
* * *
53170949 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
53170976 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*** *
53171003 GGGTATTTTGGTAATTTTATTGA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
53171029 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
53171048 GTAAACCAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.02
27 79 0.96
29 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:53171059 original size:27 final size:27
Alignment explanation
Indices: 53170949--53171064 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
53170939 TACCCTGCAG
* * * *
53170949 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
53170976 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
** * *
53171003 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
53171030 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
53171057 GGGTATTT
1 GGGTATTT
53171065 CATTAATTTT
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:53171072 original size:54 final size:54
Alignment explanation
Indices: 53170949--53171106 Score: 129
Period size: 54 Copynumber: 2.9 Consensus size: 54
53170939 TACCCTGCAG
* * * * * ** * *
53170949 GGGTATTTCGGTAATTTCACAAA-CCAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTGTAAACCAA
** **
53171003 GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACCAA
* * *** *
53171057 GGGTATTTCATTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA
1 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAA
53171107 TAGAGGGTAA
Statistics
Matches: 82, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
54 80 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACCAA
Found at i:53171098 original size:27 final size:27
Alignment explanation
Indices: 53171068--53171155 Score: 131
Period size: 27 Copynumber: 3.3 Consensus size: 27
53171058 GGTATTTCAT
* *
53171068 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATAGAGGGTAAAATGG
*
53171095 TAATTCTGTAAATAGAGGGTAAAACGG
1 TAATTCTGTAAATAGAGGGTAAAATGG
* *
53171122 TAATTCTGTAAATTGAGAGTAAAATGG
1 TAATTCTGTAAATAGAGGGTAAAATGG
53171149 TAATTCT
1 TAATTCT
53171156 ATCTTATTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.33
Consensus pattern (27 bp):
TAATTCTGTAAATAGAGGGTAAAATGG
Found at i:53171114 original size:54 final size:54
Alignment explanation
Indices: 53171038--53171155 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 54
53171028 GAGGGTATTT
* *** * * *
53171038 TGGTAATTTTGTAAACCAAGGGTATTTCATTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAA
* * *
53171092 TGGTAATTCTGTAAA-TAGAGGGTAAAACGGTAATTCTGTAAATTGAGAGTAAAA
1 TGGTAATTCTGTAAACCA-AGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAA
53171146 TGGTAATTCT
1 TGGTAATTCT
53171156 ATCTTATTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (54 bp):
TGGTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGAGTAAAA
Found at i:53171190 original size:27 final size:27
Alignment explanation
Indices: 53171160--53171245 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
53171150 AATTCTATCT
*
53171160 TATTTTGGTAATTTTACAAATCGAGGA
1 TATTTTGGTAATTTTACAAATCGAGGG
* * *
53171187 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
* *
53171214 TACTTTGGTAATTTTACAAGTCGAGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
53171241 TATTT
1 TATTT
53171246 CAATAATTTG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAATCGAGGG
Found at i:53172464 original size:42 final size:42
Alignment explanation
Indices: 53172386--53172465 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
53172376 AGAATTGGGC
** * * *
53172386 ACACGGCCTTGGGCACAGGTGTGTGGCTCAGTTGTGTGGTTG
1 ACACGGCCTTGGGCACAGGCATGTGACACAGCTGTGTGGTTG
* *
53172428 ACACGGCCTTGGGCACGGGCATGTTACACAGCTGTGTG
1 ACACGGCCTTGGGCACAGGCATGTGACACAGCTGTGTG
53172466 AAAACTACAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.25
Consensus pattern (42 bp):
ACACGGCCTTGGGCACAGGCATGTGACACAGCTGTGTGGTTG
Found at i:53178974 original size:45 final size:45
Alignment explanation
Indices: 53178844--53179106 Score: 358
Period size: 45 Copynumber: 6.0 Consensus size: 45
53178834 TTTTATCAAA
* * * **
53178844 TCACCGGCATT-CAGCCTGCTAGGTTTAAAAACCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
*
53178886 TCACCGGCATT-TCGCCTGCTAGGCTC-AAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
53178929 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
53178974 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
53179019 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
53179064 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATA
53179107 CTGTACAATA
Statistics
Matches: 197, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
41 9 0.05
42 24 0.12
43 11 0.06
44 14 0.07
45 139 0.71
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:53185655 original size:27 final size:27
Alignment explanation
Indices: 53185624--53185801 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
53185614 TAAATTGTAC
53185624 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
53185651 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
53185677 ATGCACTAAGTGTGCGAACTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
53185705 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
53185733 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
53185760 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
53185787 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
53185802 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:53185738 original size:82 final size:81
Alignment explanation
Indices: 53185625--53185775 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
53185615 AAATTGTACA
* *
53185625 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
53185689 TGCGAACTGACCATGCG
65 TGCGAACTGACCATGCG
** *
53185706 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
53185771 TGCGA
65 TGCGA
53185776 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAACTGACCATGCG
Found at i:53201547 original size:29 final size:29
Alignment explanation
Indices: 53201513--53201586 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
53201503 TCATCAACCA
*
53201513 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
53201542 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
53201571 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
53201587 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:53204665 original size:40 final size:40
Alignment explanation
Indices: 53204582--53204802 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
53204572 ACCCAAGTAT
** * *
53204582 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
53204620 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
53204660 CTTCGGGACTTAGCCCGAATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
53204700 CTTTGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
53204740 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
* *
53204781 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
53204803 CATTCGAATA
Statistics
Matches: 148, Mismatches: 31, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 93 0.63
41 28 0.19
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:53210100 original size:18 final size:20
Alignment explanation
Indices: 53210064--53210110 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
53210054 AGCTGTAAGT
53210064 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
53210084 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
53210103 ATGATATA
1 AT-ATATA
53210111 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:53210524 original size:50 final size:50
Alignment explanation
Indices: 53210460--53210798 Score: 322
Period size: 50 Copynumber: 6.8 Consensus size: 50
53210450 CCATTGTGAT
* *
53210460 TCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * *
53210510 TCGA-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGG
1 TC-ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * *
53210560 TCACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACTATATTGCTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * * * * * *
53210610 TCGCATGTGTAGTATTAAGTGCAAGCTACTATGCGTACCTG-TTAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGG
* * * * *
53210661 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * * *
53210711 TCACGTGTGTACTACTAACTGCAGGCTACAATGTGTACAAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * *
53210761 TCGCATGTGTAGTACTAAGTGTAGGCTACCACGCGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
53210799 TAGAGAGCTT
Statistics
Matches: 228, Mismatches: 56, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
49 3 0.01
50 186 0.82
51 38 0.17
52 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
Found at i:53210720 original size:101 final size:101
Alignment explanation
Indices: 53210560--53210802 Score: 231
Period size: 101 Copynumber: 2.4 Consensus size: 101
53210550 AATGGTTAGG
* * * * * * * *
53210560 TCACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACTATATTGCTAGGTCGCATGTGTAGTAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGCTAAGTCACATGTGTACTAC
* *
53210625 TAAGTGCAAGCTACTATGCGTACCTGTTAACTTTGA
66 TAACTGCAAGCTACAATGCGTACCTGTTAACTTTGA
* * *
53210661 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGATGGTTAAGTCACGTGTGTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATGGCTAAGTCACATGTGTACTA
* * ** * * *
53210725 CTAACTGCAGGCTACAATGTGTACAAGATTGA--TAGG
65 CTAACTGCAAGCTACAATGCGTACCTG-TTAACTTTGA
* * * *
53210761 TCGCATGTGTAGTACTAAGTGTAGGCTACCACGCGTACTAGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGA
53210803 GAGCTTCGGC
Statistics
Matches: 114, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
100 38 0.33
101 73 0.64
102 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGCTAAGTCACATGTGTACTAC
TAACTGCAAGCTACAATGCGTACCTGTTAACTTTGA
Found at i:53210789 original size:151 final size:151
Alignment explanation
Indices: 53210514--53210798 Score: 426
Period size: 151 Copynumber: 1.9 Consensus size: 151
53210504 GATAGGTCGA
* * * *
53210514 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTTTAGTACTAAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAAGTCACGTGTGTACTACTAAC
* * * * * * *
53210579 TGCAGGCTACTACGTGTACTATATTGCTAGGTCGCATGTGTAGTATTAAGTGCAAGCTACTATGC
66 TGCAGGCTACAACGTGTACAAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAAGCTACCACGC
53210644 GTACCTGTTAACTTTGATCAC
131 GTACCTGTTAACTTTGATCAC
* *
53210665 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCACGTGTGTACTACTAAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAAGTCACGTGTGTACTACTAAC
* * *
53210730 TGCAGGCTACAATGTGTACAAGATTGATAGGTCGCATGTGTAGTACTAAGTGTAGGCTACCACGC
66 TGCAGGCTACAACGTGTACAAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAAGCTACCACGC
53210795 GTAC
131 GTAC
53210799 TAGAGAGCTT
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 118 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAAGTCACGTGTGTACTACTAAC
TGCAGGCTACAACGTGTACAAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAAGCTACCACGC
GTACCTGTTAACTTTGATCAC
Found at i:53214108 original size:25 final size:26
Alignment explanation
Indices: 53214047--53214108 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
53214037 AAATCTTCCA
*
53214047 TATTTTCTTATGATATTTGTTCTGGG
1 TATTTCCTTATGATATTTGTTCTGGG
* * *
53214073 TCTTTCATTATGATA-TTGTATCTTGG
1 TATTTCCTTATGATATTTGT-TCTGGG
53214099 -ATTTCCTTAT
1 TATTTCCTTAT
53214109 CTTGGATTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.18, C:0.11, G:0.15, T:0.56
Consensus pattern (26 bp):
TATTTCCTTATGATATTTGTTCTGGG
Found at i:53214111 original size:15 final size:15
Alignment explanation
Indices: 53214091--53214134 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
53214081 TATGATATTG
53214091 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
53214105 TTATCTTGGATTTCTC
1 -TATCTTGGATTTCTC
*
53214121 TATCTTGGACTTCT
1 TATCTTGGATTTCT
53214135 TAATCCTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.52
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:53214149 original size:30 final size:30
Alignment explanation
Indices: 53214091--53214149 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
53214081 TATGATATTG
* *
53214091 TATCTTGGATTTCCTTATCTTGGATTTCTC
1 TATCTTGGACTTCCTTATCCTGGATTTCTC
*
53214121 TATCTTGGACTT-CTTAATCCTGGTTTTCT
1 TATCTTGGACTTCCTT-ATCCTGGATTTCT
53214150 TATTATCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.53
Consensus pattern (30 bp):
TATCTTGGACTTCCTTATCCTGGATTTCTC
Found at i:53217149 original size:50 final size:49
Alignment explanation
Indices: 53217074--53217351 Score: 200
Period size: 50 Copynumber: 5.7 Consensus size: 49
53217064 GTGAGTCACG
*
53217074 TGTGTAGTACTAAGTGCGGGCTACTACGTGTACC-ATGTTGATAGGTCGCT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATG--GATAGGTCGCT
* *
53217124 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-C--TCGATA----GCT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATGGATAGGTCGCT
* * * * * *
53217166 TCGAT-CACGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGTTCACG
1 T-G-TGTA-GTACTAAGTGCAGGCTACTACGTGTA-CCAATGGATAGGTCGCT
* * * * * *
53217218 TGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAAATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAATGGATAGGTCGCT
* * * *
53217268 TCTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATTGATAGGTCGCAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-ATGGATAGGTCGC-T
* * *
53217319 T-TGTAGTACTAAGTGTAGG-TACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
53217352 GAGAGCTTCA
Statistics
Matches: 185, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
42 4 0.02
43 2 0.01
44 26 0.14
46 4 0.02
48 5 0.03
49 15 0.08
50 124 0.67
51 3 0.02
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATGGATAGGTCGCT
Found at i:53219800 original size:38 final size:38
Alignment explanation
Indices: 53219758--53219836 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
53219748 TGAAAAATGT
53219758 ATGAGAAATGTATTATTGTTTAATTATTAAGTCCAGTA
1 ATGAGAAATGTATTATTGTTTAATTATTAAGTCCAGTA
53219796 ATGAGAAATGTATTATTGTTTAATTATTAAGTCCAGTA
1 ATGAGAAATGTATTATTGTTTAATTATTAAGTCCAGTA
53219834 ATG
1 ATG
53219837 CTCTGTAACC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (38 bp):
ATGAGAAATGTATTATTGTTTAATTATTAAGTCCAGTA
Found at i:53224153 original size:12 final size:12
Alignment explanation
Indices: 53224136--53224174 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
53224126 TCAGGTAGTT
53224136 ACACGGCCTAGC
1 ACACGGCCTAGC
53224148 ACACGGCCTAGC
1 ACACGGCCTAGC
* *
53224160 AAATGGCCTAGC
1 ACACGGCCTAGC
53224172 ACA
1 ACA
53224175 TGAGTGTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.31, C:0.36, G:0.23, T:0.10
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:53229317 original size:46 final size:48
Alignment explanation
Indices: 53229250--53229376 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 48
53229240 TATGTGAGGC
* *
53229250 AGTGTAAGACATGTATGGGACATGCATCGACATTCAGACA-A-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTCAGACATACAAGCT
* * ** *
53229296 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGGGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTCAGACATACAAGCT
* *
53229344 AGTGTAAGACCTGTCTAGGACATGGCATCGACA
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACA
53229377 CCGATAGACG
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
46 34 0.51
47 1 0.01
48 25 0.37
49 7 0.10
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTCAGACATACAAGCT
Found at i:53229431 original size:49 final size:49
Alignment explanation
Indices: 53229348--53229463 Score: 126
Period size: 49 Copynumber: 2.4 Consensus size: 49
53229338 CAAGCTAGTG
* * * *
53229348 TAAGACCTGTCTAGGACATGGCATCGACACCGATAGACGAGACCCAGTC
1 TAAGACCTATCTGGGACATAGCATCGACACCGATAGACGAAACCCAGTC
* * * ** *
53229397 TAAGACCTATCTGGGACATAGCATCGTC-CTCGATATATGAAAGTCAGTG
1 TAAGACCTATCTGGGACATAGCATCGACAC-CGATAGACGAAACCCAGTC
53229446 TAAGACCTATCTGGGACA
1 TAAGACCTATCTGGGACA
53229464 CGACATTAAC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 55 0.98
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (49 bp):
TAAGACCTATCTGGGACATAGCATCGACACCGATAGACGAAACCCAGTC
Found at i:53234724 original size:40 final size:40
Alignment explanation
Indices: 53234641--53234860 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
53234631 ACCCAAGTAT
** * *
53234641 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
53234679 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
53234719 CTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAATAC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
53234759 CTTC-GGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
53234798 CTTTGGATCTTAGTCCGGATATAGTCACTTAGAACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
53234839 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
53234861 CATTCGAATA
Statistics
Matches: 144, Mismatches: 33, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.08
39 45 0.31
40 60 0.42
41 27 0.19
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:53242820 original size:40 final size:40
Alignment explanation
Indices: 53242711--53242929 Score: 196
Period size: 39 Copynumber: 5.5 Consensus size: 40
53242701 ACCCAAGTAT
* ** * *
53242711 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
53242749 CTTCGGGTCTTAG-CCAGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
53242788 CTTCGGGACGTAGCCCGGATATAGTCGCTAGCACAAATAC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
53242828 CTTC-GGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
53242867 CTT-TGGACCTTAGTCCGGATATAGTCACTTAGAACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
53242908 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
53242930 CATTCGAATA
Statistics
Matches: 141, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
38 25 0.18
39 47 0.33
40 41 0.29
41 25 0.18
42 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:53250374 original size:48 final size:46
Alignment explanation
Indices: 53250261--53250382 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
53250251 GTGGAAAGTG
* ** *
53250261 AGCTAGTGTAAGACATGTCCGGGACATGCATCGGCATTGAGACAAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACAAA
* * * *
53250307 AGCTAGTATAAGACATGTCTGGGACATGCATTGGCCTCAAGATATACA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACA-A-A
* *
53250355 AGCTAGTGTAAGACCTGTCTAGGACATG
1 AGCTAGTGTAAGACATGTCTGGGACATG
53250383 GTATGGACAC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 37 0.59
47 1 0.02
48 25 0.40
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACAAA
Found at i:53253824 original size:43 final size:42
Alignment explanation
Indices: 53253732--53253843 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 42
53253722 TTGAGATTAT
* *
53253732 GTGTAAGACCATATCTAGGATATGGCATCGATAAGAGACTTC
1 GTGTAAGACCATAGCTAGGATATGGCATCGATAAGAGACTCC
* * *
53253774 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGA-TCCC
1 GTGTAAGACCATAGCTAGGATA-TGGCATCGATAAGAGACT-CC
* * * *
53253817 GTTTAAGA-CATATCTCGGATGTGGCAT
1 GTGTAAGACCATAGCTAGGATATGGCAT
53253844 TGGTATGGTG
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 6 0.10
42 29 0.50
43 23 0.40
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTAGGATATGGCATCGATAAGAGACTCC
Found at i:53256410 original size:23 final size:23
Alignment explanation
Indices: 53256380--53256469 Score: 74
Period size: 24 Copynumber: 3.7 Consensus size: 23
53256370 CTATCGAGCA
*
53256380 GTAAGCTCATACGAGTTGAAACG
1 GTAAGCTCATACGAGCTGAAACG
* **
53256403 GTAAGCTC-TAATGAGCTGAAAATA
1 GTAAGCTCAT-ACGAGCTG-AAACG
*
53256427 GTAAGCTCTTACGAGCTGATATATCG
1 GTAAGCTCATACGAGCTGA-A-A-CG
*
53256453 GTAAGCTCATACAAGCT
1 GTAAGCTCATACGAGCT
53256470 ATGGTGAGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
22 1 0.02
23 15 0.29
24 19 0.37
25 2 0.04
26 15 0.29
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (23 bp):
GTAAGCTCATACGAGCTGAAACG
Found at i:53260623 original size:51 final size:51
Alignment explanation
Indices: 53260568--53260667 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
53260558 CTACCACATA
53260568 ACATGTAA-CACATCCATAATG-ATCACAGACCTCTCAACGAGCTCGGATGTT
1 ACATG-AATCACATCCATAATGAAT-ACAGACCTCTCAACGAGCTCGGATGTT
* * * * *
53260619 ACATGAATCGCATCCATTATGAATTCAGACCTCTCAATGAGCTTGGATG
1 ACATGAATCACATCCATAATGAATACAGACCTCTCAACGAGCTCGGATG
53260668 CCACATATCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 2 0.05
51 38 0.90
52 2 0.05
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAATACAGACCTCTCAACGAGCTCGGATGTT
Found at i:53265240 original size:39 final size:40
Alignment explanation
Indices: 53265197--53265364 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
53265187 CTCGTTCAAG
* * * *
53265197 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
53265236 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
53265276 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
53265316 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
53265356 TGCCTTCGG
1 TGCCTTCGG
53265365 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:53265348 original size:80 final size:80
Alignment explanation
Indices: 53265232--53265417 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
53265222 AGTAACTCAT
* * *
53265232 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
53265296 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
53265311 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
53265375 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
53265392 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
53265418 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:53265377 original size:40 final size:40
Alignment explanation
Indices: 53265234--53265417 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
53265224 TAACTCATAC
* *
53265234 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
53265274 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
53265314 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
53265354 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
53265395 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
53265418 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:53270185 original size:13 final size:13
Alignment explanation
Indices: 53270167--53270191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53270157 CCAAGCACAC
53270167 GCCTGTGTCCCTG
1 GCCTGTGTCCCTG
53270180 GCCTGTGTCCCT
1 GCCTGTGTCCCT
53270192 TACACGGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCTGTGTCCCTG
Found at i:53271177 original size:55 final size:54
Alignment explanation
Indices: 53271094--53271207 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 54
53271084 AGCATGGCTG
*
53271094 CCAG-AACAGATATTGCGACAGAGTCACCAAATACAGATA-TTGTGGCAGAGCCA
1 CCAGAAACAGATATTGCGACAGAGCCACCAAAT-CAGATATTTGTGGCAGAGCCA
* * *
53271147 CCAGAAACAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGCGACAGAGCCACCAAATCAGATATTTGTGGCAGAGCCA
53271202 CCAGAA
1 CCAGAA
53271208 GGCTTCCTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 4 0.07
54 14 0.26
55 36 0.67
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAAACAGATATTGCGACAGAGCCACCAAATCAGATATTTGTGGCAGAGCCA
Found at i:53271205 original size:27 final size:26
Alignment explanation
Indices: 53271094--53271207 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 26
53271084 AGCATGGCTG
* * *
53271094 CCAGAACAGATATTGCGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
53271120 CCAAATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
53271147 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
*
53271175 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
53271202 CCAGAA
1 CCAGAA
53271208 GGCTTCCTCC
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
26 4 0.05
27 55 0.71
28 19 0.24
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:53271639 original size:8 final size:8
Alignment explanation
Indices: 53271626--53271656 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
53271616 AATGCAGGCT
*
53271626 TTTCGGCG
1 TTTCGGCA
53271634 TTTCGGCA
1 TTTCGGCA
53271642 TTTCGGCA
1 TTTCGGCA
53271650 TTTCGGC
1 TTTCGGC
53271657 TTTTACCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.06, C:0.26, G:0.29, T:0.39
Consensus pattern (8 bp):
TTTCGGCA
Found at i:53273703 original size:46 final size:46
Alignment explanation
Indices: 53273651--53273826 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
53273641 TGTTTGGGCA
*
53273651 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
53273697 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
53273744 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
53273790 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
53273827 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:53273806 original size:93 final size:93
Alignment explanation
Indices: 53273647--53273818 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
53273637 AGGATGTTTG
* **
53273647 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
53273712 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
53273740 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
53273805 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
53273819 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:53281762 original size:27 final size:27
Alignment explanation
Indices: 53281728--53281830 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 27
53281718 CTGCCAGAAT
* * *
53281728 AGATATTGCGACAGAGTCACCAGATAC
1 AGATATTGTGGCAGAGCCACCAGATAC
*
53281755 AGATATTGTGGCAGAGCCACCAGAAAC
1 AGATATTGTGGCAGAGCCACCAGATAC
53281782 AGATATTTGTGGCAGAGCCACCAGAT-C
1 AGATA-TTGTGGCAGAGCCACCAGATAC
53281809 AGATATTTGTGGCAGAGCCACC
1 AGATA-TTGTGGCAGAGCCACC
53281831 GAAAGGCTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 51 0.73
28 19 0.27
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATATTGTGGCAGAGCCACCAGATAC
Found at i:53284046 original size:28 final size:28
Alignment explanation
Indices: 53284014--53284107 Score: 116
Period size: 28 Copynumber: 3.4 Consensus size: 28
53284004 CGATATTTTG
* *
53284014 CACACGAAGTGTCATTCTCAATATCTCA
1 CACACTAAGTGCCATTCTCAATATCTCA
* *
53284042 CACACTAAGTGCCATTCTCAATATTTCG
1 CACACTAAGTGCCATTCTCAATATCTCA
* * *
53284070 TACACTAAGTGCCATTCTCAATATTTCG
1 CACACTAAGTGCCATTCTCAATATCTCA
*
53284098 TACACTAAGT
1 CACACTAAGT
53284108 ACCTTATTTG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTCAATATCTCA
Found at i:53292029 original size:12 final size:12
Alignment explanation
Indices: 53292012--53292036 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53292002 TATGTATGTT
53292012 TGAAAATTTTTA
1 TGAAAATTTTTA
53292024 TGAAAATTTTTA
1 TGAAAATTTTTA
53292036 T
1 T
53292037 TATTTGCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:53294110 original size:10 final size:11
Alignment explanation
Indices: 53294095--53294163 Score: 76
Period size: 11 Copynumber: 6.7 Consensus size: 11
53294085 ATTTTGATAT
*
53294095 ACATGATTTG-
1 ACATGATATGC
53294105 ACATGATATGC
1 ACATGATATGC
53294116 ACATGATATG-
1 ACATGATATGC
*
53294126 -TATGATATGC
1 ACATGATATGC
53294136 ACATGATATG-
1 ACATGATATGC
*
53294146 -TATGATATGC
1 ACATGATATGC
53294156 ACATGATA
1 ACATGATA
53294164 AATTCATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
9 16 0.33
10 9 0.18
11 24 0.49
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:53294132 original size:20 final size:20
Alignment explanation
Indices: 53294107--53294163 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
53294097 ATGATTTGAC
53294107 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
53294127 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
53294147 ATGATATGCACATGATA
1 ATGATATGCACATGATA
53294164 AATTCATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:53294245 original size:25 final size:25
Alignment explanation
Indices: 53294211--53294280 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
53294201 GAGGAAGTGC
53294211 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
53294236 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
53294261 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
53294281 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:53294292 original size:24 final size:24
Alignment explanation
Indices: 53294211--53294293 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
53294201 GAGGAAGTGC
*
53294211 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
53294236 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTAT-G
* *
53294261 AAAAAGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
53294284 AAAAGAGGCT
1 AAAAG-GGCT
53294294 AGGCCTCCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 8 0.15
25 40 0.77
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:53294540 original size:31 final size:31
Alignment explanation
Indices: 53294502--53294580 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
53294492 CATTTGTAGT
**
53294502 AAAGGCTTCGGCCCAGTGGTATGAATAATGA
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
* *
53294533 AAAGGCTTCGGCCCAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
53294564 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
53294581 ATATGCTGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGACATGAATAATGA
Found at i:53313919 original size:29 final size:29
Alignment explanation
Indices: 53313772--53313911 Score: 153
Period size: 29 Copynumber: 4.9 Consensus size: 29
53313762 TACATACATG
53313772 CATATGGCCCACTT-GGCCC--ATC-TCATT
1 CATATGGCCCA-TTAGGCCCAAATCAT-ATT
* * * * * *
53313799 CATATGGTCTATCAGGCCGAATTCACATT
1 CATATGGCCCATTAGGCCCAAATCATATT
53313828 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* *
53313857 CATATGGCCCGTTAGGCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
*
53313886 CATATGACCCATTAGGCCCAAATCAT
1 CATATGGCCCATTAGGCCCAAATCAT
53313912 CTTTATATTC
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 13 0.14
29 78 0.85
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:53322096 original size:29 final size:29
Alignment explanation
Indices: 53322054--53322149 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
53322044 TGGCCCATCT
53322054 CATTCATATAGCCCATCAGGCCCAATTCA
1 CATTCATATAGCCCATCAGGCCCAATTCA
* *
53322083 CATTCATATGGCCCATCAGGCCCAAATCA
1 CATTCATATAGCCCATCAGGCCCAATTCA
*
53322112 TATTCATATAGCCCATTC-GGCCCAATTCA
1 CATTCATATAGCCCA-TCAGGCCCAATTCA
**
53322141 TTTTCATAT
1 CATTCATAT
53322150 TACCAATTAG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
29 58 0.97
30 2 0.03
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.29
Consensus pattern (29 bp):
CATTCATATAGCCCATCAGGCCCAATTCA
Found at i:53322134 original size:58 final size:58
Alignment explanation
Indices: 53322055--53322169 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 58
53322045 GGCCCATCTC
* *
53322055 ATTCATATAGCCCATCAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAAATCAT
1 ATTCATATAGCCCATCAGGCCCAATTCACATTCATATGACCAATCAGGCCCAAATCAT
** * *
53322113 ATTCATATAGCCCATTC-GGCCCAATTCATTTTCATATTACCAATTAGGCCCAAATCA
1 ATTCATATAGCCCA-TCAGGCCCAATTCACATTCATATGACCAATCAGGCCCAAATCA
53322170 CCTTTATATT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
58 48 0.96
59 2 0.04
ACGTcount: A:0.31, C:0.30, G:0.10, T:0.28
Consensus pattern (58 bp):
ATTCATATAGCCCATCAGGCCCAATTCACATTCATATGACCAATCAGGCCCAAATCAT
Found at i:53322162 original size:29 final size:29
Alignment explanation
Indices: 53322055--53322165 Score: 109
Period size: 29 Copynumber: 3.8 Consensus size: 29
53322045 GGCCCATCTC
* *
53322055 ATTCATA-TAGCCCATCAGGCCCAATTCAC
1 ATTCATATTA-CCCATTAGGCCCAATTCAT
** * *
53322084 ATTCATATGGCCCATCAGGCCCAAATCAT
1 ATTCATATTACCCATTAGGCCCAATTCAT
*
53322113 ATTCATA-TAGCCCATTCGGCCCAATTCAT
1 ATTCATATTA-CCCATTAGGCCCAATTCAT
* *
53322142 TTTCATATTACCAATTAGGCCCAA
1 ATTCATATTACCCATTAGGCCCAA
53322166 ATCACCTTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
29 65 0.97
30 2 0.03
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.28
Consensus pattern (29 bp):
ATTCATATTACCCATTAGGCCCAATTCAT
Found at i:53322224 original size:29 final size:28
Alignment explanation
Indices: 53322192--53322263 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
53322182 TGCTCACACA
53322192 CAAATTTT-CTATCACATAGCATCACTTAT
1 CAAATTTTCCTAT--CATAGCATCACTTAT
*
53322221 CAAATTTTGCCTATTATAGCATCACTTAT
1 CAAATTTT-CCTATCATAGCATCACTTAT
53322250 CAAATTTTGCCTAT
1 CAAATTTT-CCTAT
53322264 TATGGGCCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
29 36 0.90
31 4 0.10
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (28 bp):
CAAATTTTCCTATCATAGCATCACTTAT
Found at i:53322264 original size:29 final size:29
Alignment explanation
Indices: 53322207--53322266 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
53322197 TTTCTATCAC
53322207 ATAGCATCACTTATCAAATTTTGCCTATT
1 ATAGCATCACTTATCAAATTTTGCCTATT
53322236 ATAGCATCACTTATCAAATTTTGCCTATT
1 ATAGCATCACTTATCAAATTTTGCCTATT
53322265 AT
1 AT
53322267 GGGCCCAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.42
Consensus pattern (29 bp):
ATAGCATCACTTATCAAATTTTGCCTATT
Found at i:53327935 original size:4 final size:4
Alignment explanation
Indices: 53327928--53327952 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
53327918 AATAAATAGA
53327928 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
53327953 TCTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:53328608 original size:177 final size:177
Alignment explanation
Indices: 53328400--53328771 Score: 645
Period size: 177 Copynumber: 2.1 Consensus size: 177
53328390 ATCTTCAACT
*
53328400 TGTCTTCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAA
* * *
53328465 CATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGTTGAATATGGAGACGCCAGATCTGTTAT
66 CATCTGAAGGTTAGATCTACTATGTGTCTGCCCTCCGTTGAATATGGAGACACCAGATCTGTTAT
*
53328530 CTTGGATCTGCTTTAATGTGAAAAACATCTAAAAGTCAAATCTGCTA
131 CTTGGATCTGCTTTAATGTGAAAAACATCTAAAAGCCAAATCTGCTA
*
53328577 TGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAA
*
53328642 CATCTGAAGGTTAGATTTACTATGTGTCTGCCCTCCGTTGAATATGGAGACACCAGATCTGTTAT
66 CATCTGAAGGTTAGATCTACTATGTGTCTGCCCTCCGTTGAATATGGAGACACCAGATCTGTTAT
* * *
53328707 CTTGGATCTGCTTTGATGTGAAAAATATCTGAAAGCCAAATCTGCTA
131 CTTGGATCTGCTTTAATGTGAAAAACATCTAAAAGCCAAATCTGCTA
*
53328754 TGTCTTCGATTTGCTCCT
1 TGTCTTCGATTTGTTCCT
53328772 CGTCGAAGAT
Statistics
Matches: 183, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
177 183 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (177 bp):
TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAA
CATCTGAAGGTTAGATCTACTATGTGTCTGCCCTCCGTTGAATATGGAGACACCAGATCTGTTAT
CTTGGATCTGCTTTAATGTGAAAAACATCTAAAAGCCAAATCTGCTA
Found at i:53328709 original size:87 final size:87
Alignment explanation
Indices: 53328441--53328719 Score: 269
Period size: 87 Copynumber: 3.2 Consensus size: 87
53328431 ATGCCAAATC
53328441 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGTTGA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGTTGA
*
53328506 ATATGGAGACGCCAGATCTGTT
66 ATATGGAGACACCAGATCTGTT
* * * * * * * * * *
53328528 ATCTTGGATCTGCTTTAATGTGAAAAACATCTAAAAGTCAAATCTGCTATGTCTTTG--ATTTGT
1 ATCTTGGATCTGC-TTCA-GT-ATAAACATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGT
** * * * ** *
53328591 T-CCT-TGTAAACACAAGAATGCCAAATC
63 TGAATATGGAGACACCAG-AT--C-TGTT
* * *
53328618 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATTTACTATGTGTCTGCCCTCCGTTGA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGTTGA
53328683 ATATGGAGACACCAGATCTGTT
66 ATATGGAGACACCAGATCTGTT
53328705 ATCTTGGATCTGCTT
1 ATCTTGGATCTGCTT
53328720 TGATGTGAAA
Statistics
Matches: 141, Mismatches: 40, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
86 8 0.06
87 58 0.41
88 11 0.08
89 10 0.07
90 45 0.32
91 9 0.06
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (87 bp):
ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGTTGA
ATATGGAGACACCAGATCTGTT
Found at i:53333408 original size:44 final size:44
Alignment explanation
Indices: 53333265--53333421 Score: 182
Period size: 43 Copynumber: 3.6 Consensus size: 44
53333255 AGCTCATACA
* * *
53333265 ATGCCAACGTCCCAAACGTGGTCTTACATGT-AATC-AAGTGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAAGTAT-G
* * *
53333308 ATGCC-TCTGTCTCAGACATGGTCTTACACG-AAATCAAA-TATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAAATCAAAGTATG
*
53333350 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCA-AAGTATG
53333394 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
53333422 CGATAACACA
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
42 27 0.28
43 35 0.36
44 33 0.34
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAAGTATG
Found at i:53333422 original size:86 final size:85
Alignment explanation
Indices: 53333265--53333424 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 85
53333255 AGCTCATACA
* * *
53333265 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAGTGTCGATGCCTCTGTCTCAGACATGGT
1 ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAGTGTCGATGCCACTGTCCCAGACATGGT
53333330 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATATG
* *
53333350 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGT-T-GATGCCAAC-GTCCCAGACA
1 ATGCCAACGTCCCAAACATGGTCTTACATGT-AATC--AAGTGTCGATGCC-ACTGTCCCAGACA
53333412 TGGTCTTACACGA
62 TGGTCTTACACGA
53333425 TAACACATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
85 28 0.42
86 32 0.48
87 2 0.03
88 4 0.06
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAGTGTCGATGCCACTGTCCCAGACATGGT
CTTACACGAAATCAAATATG
Found at i:53338291 original size:94 final size:94
Alignment explanation
Indices: 53338185--53338402 Score: 260
Period size: 94 Copynumber: 2.3 Consensus size: 94
53338175 CGAGGTCGAT
* * * * * *
53338185 GCATGTCTCAGACATGTCTTACACTGGCACTCGTCTCTG-TGCCGGTGCCATGTCCCAAACATGG
1 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCT-AGATGCCGATACCATGCCCCAAACATGG
* * *
53338249 TCTTACATTGGCTATCATAGTATGGCTGATA
65 TCTTACACTGGCTATCATAATATGGCCGA-A
* ** *
53338280 -CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTAGATGTTGATACCATGCCCCAGACATGGT
1 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTAGATGCCGATACCATGCCCCAAACATGGT
* *
53338344 CTTACACTGGCTCTCATAATGTGGCCGAA
66 CTTACACTGGCTATCATAATATGGCCGAA
*
53338373 GCATGTCCCAGACACGTCTTACACTAGCAC
1 GCATGTCCCAGACATGTCTTACACTAGCAC
53338403 ACAAATCACC
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 2 0.02
94 102 0.98
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTAGATGCCGATACCATGCCCCAAACATGGT
CTTACACTGGCTATCATAATATGGCCGAA
Found at i:53338383 original size:47 final size:47
Alignment explanation
Indices: 53338038--53338397 Score: 151
Period size: 47 Copynumber: 7.7 Consensus size: 47
53338028 GGGATATATT
* * *
53338038 GCCGAT-GCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTATACGCG
1 GCCGATAG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-ATGTG
* * ** * * * *
53338087 TGCTGAT-GCATGTCCTAGACATGTCTTACACAAG-T-ACA-ACTCTTA
1 -GCCGATAGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GTG
* * * * *
53338132 GCCGATA-CGTTTCCCAGACACGTCTTACACTGGCTATCTC-T-GTCGAG
1 GCCGATAGCATGTCCCAGACATGTCTTACACTGGC--TCTCATAAT-GTG
* * * * * *
53338179 GTCGAT-GCATGTCTCAGACATGTCTTACACTGGCACTCGT-CTCTG
1 GCCGATAGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTG
* * * * * *
53338224 TGCCGGT-GCCATGTCCCAAACATGGTCTTACATTGGCTATCATAGTATG
1 -GCCGATAG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTG
* *
53338273 GCTGATA-CATGTCCCAGACATGTCTTACACTAGCCCTCGTC-TAGATGT-
1 GCCGATAGCATGTCCCAGACATGTCTTACACT-G-GCTC-TCATA-ATGTG
* * *
53338321 --TGATACCATGCCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATAGCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTG
*
53338367 GCCGA-AGCATGTCCCAGACACGTCTTACACT
1 GCCGATAGCATGTCCCAGACATGTCTTACACT
53338398 AGCACACAAA
Statistics
Matches: 230, Mismatches: 56, Indels: 52
0.68 0.17 0.15
Matches are distributed among these distances:
44 25 0.11
45 11 0.05
46 37 0.16
47 85 0.37
48 46 0.20
49 20 0.09
50 6 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATAGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTG
Found at i:53340054 original size:21 final size:21
Alignment explanation
Indices: 53340030--53340071 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
53340020 CCTAGCTGAA
*
53340030 TTGTATAT-AGCATGGAATGAT
1 TTGT-TATGAGCATGAAATGAT
53340051 TTGTTATGAGCATGAAATGAT
1 TTGTTATGAGCATGAAATGAT
53340072 CAAGTTACGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (21 bp):
TTGTTATGAGCATGAAATGAT
Found at i:53340198 original size:43 final size:43
Alignment explanation
Indices: 53340150--53340316 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
53340140 GATTCCGATA
*
53340150 TGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCAATT
1 TGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCAATT
* * * *
53340193 TGTGATTTACATGTAAGACCATGTCTGAGACATCGGCATCGTATT
1 TGTGATTT-CATGTAAGACCACGTCTGGGACATTGGCATC-AATT
* * * * *
53340238 TGAG-TTT-GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATA
1 TGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATCAATT
* *
53340279 TGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
53340317 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 5 0.05
42 26 0.26
43 32 0.32
44 31 0.31
45 6 0.06
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCAATT
Found at i:53340273 original size:42 final size:43
Alignment explanation
Indices: 53340153--53340276 Score: 121
Period size: 44 Copynumber: 2.9 Consensus size: 43
53340143 TCCGATATGT
* *
53340153 GATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATC-AATTTGT
1 GATTTAGTGTAAGACC-CTGTCTGGGACA-TGGCATCGAATTTGA
* * * *
53340196 GATTTACATGTAAGACCATGTCTGAGACATCGGCATCGTATTTGA
1 GATTTA-GTGTAAGACCCTGTCTGGGACAT-GGCATCGAATTTGA
53340241 G-TTT-GTGTAAGACCCTGTCTGGGACAGTGGCATCGA
1 GATTTAGTGTAAGACCCTGTCTGGGACA-TGGCATCGA
53340277 TATGTGATTA
Statistics
Matches: 66, Mismatches: 10, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
42 26 0.39
43 7 0.11
44 27 0.41
45 6 0.09
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTTAGTGTAAGACCCTGTCTGGGACATGGCATCGAATTTGA
Found at i:53346503 original size:53 final size:49
Alignment explanation
Indices: 53346418--53346563 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 49
53346408 ATAGTTGACT
* * * * *
53346418 AAAGGATATCATGTAAGACCATGTCAAAACATGGCATTTGTGAGTTCATA
1 AAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-ATA
*
53346468 AGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTTA
1 A---AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTATA
* * *
53346520 AAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
53346564 GTACCCGTGT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
49 40 0.48
50 1 0.01
52 3 0.04
53 40 0.48
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (49 bp):
AAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTATA
Found at i:53346777 original size:16 final size:16
Alignment explanation
Indices: 53346756--53346786 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53346746 ATAAATTTGA
53346756 TTAATTAAGTAAGTAT
1 TTAATTAAGTAAGTAT
*
53346772 TTAATTAAGTGAGTA
1 TTAATTAAGTAAGTA
53346787 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (16 bp):
TTAATTAAGTAAGTAT
Found at i:53346778 original size:20 final size:20
Alignment explanation
Indices: 53346750--53346789 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
53346740 GTATTAATAA
* *
53346750 ATTTGATTAATTAAGTAAGT
1 ATTTAATTAAGTAAGTAAGT
*
53346770 ATTTAATTAAGTGAGTAAGT
1 ATTTAATTAAGTAAGTAAGT
53346790 GAAGAAGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (20 bp):
ATTTAATTAAGTAAGTAAGT
Found at i:53350564 original size:20 final size:20
Alignment explanation
Indices: 53350539--53350577 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
53350529 CCAAGTTTTT
**
53350539 CCTTTTCTTTTTTTCTTTCC
1 CCTTTTCTTCCTTTCTTTCC
53350559 CCTTTTCTTCCTTTCTTTC
1 CCTTTTCTTCCTTTCTTTC
53350578 TTGTTTGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (20 bp):
CCTTTTCTTCCTTTCTTTCC
Found at i:53350889 original size:30 final size:32
Alignment explanation
Indices: 53350828--53350898 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 32
53350818 TATTTAATTT
*
53350828 ATAAATATCTTTTACCTTAATAATAATAAGTA
1 ATAAATATCTTTTACCTTAATAATAAAAAGTA
53350860 ATAAATATCTATTTA-CTT-A-AATAAAAAGTA
1 ATAAATATCT-TTTACCTTAATAATAAAAAGTA
53350890 ATTAAATAT
1 A-TAAATAT
53350899 TTACGTTACA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
30 11 0.31
31 8 0.22
32 13 0.36
33 4 0.11
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (32 bp):
ATAAATATCTTTTACCTTAATAATAAAAAGTA
Found at i:53351384 original size:17 final size:18
Alignment explanation
Indices: 53351362--53351395 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
53351352 CACATTGAAG
53351362 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
53351379 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
53351396 CTTCCTTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:53352583 original size:29 final size:29
Alignment explanation
Indices: 53352516--53352607 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
53352506 AAGTCTACAT
* * *
53352516 ACATGCATATGGCCCACTACGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
53352544 TCATTCATATGGCCCTTTAGTCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
53352573 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
53352602 ACATTC
1 ACATTC
53352608 CTAGTCATGC
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.27, C:0.34, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:53357031 original size:42 final size:42
Alignment explanation
Indices: 53356942--53357076 Score: 168
Period size: 42 Copynumber: 3.2 Consensus size: 42
53356932 CCTTGTGATG
* * *
53356942 GTGTATTAAATCGGTCTTTATTGCCTAGCAGGCTTTATGAC-
1 GTGTATTATATCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
53356983 GATGTATTATATCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
1 G-TGTATTATATCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
* ** *
53357026 GTGTATTATGTTAGGC-CTATTGCCTAGCAGG-TTCTATGCCA
1 GTGTATTATATCGGGCTTTATTGCCTAGCAGGCTT-TATGCCA
53357067 GTGTATTATA
1 GTGTATTATA
53357077 CTAGGCTTTA
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
40 2 0.02
41 31 0.37
42 49 0.59
43 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (42 bp):
GTGTATTATATCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
Found at i:53357094 original size:41 final size:42
Alignment explanation
Indices: 53356957--53357095 Score: 162
Period size: 41 Copynumber: 3.4 Consensus size: 42
53356947 TTAAATCGGT
* *
53356957 CTTTATTGCCTAGCAGGCTTTATGAC-GATGTATTATA-TCGGG
1 CTTTATTGCCTAGCAGGCTTTATGCCAG-TGTATTATACT-AGG
**
53356999 CTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTTAGG
1 CTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATACTAGG
*
53357041 C-CTATTGCCTAGCAGG-TTCTATGCCAGTGTATTATACTAGG
1 CTTTATTGCCTAGCAGGCTT-TATGCCAGTGTATTATACTAGG
*
53357082 CTTTA-TGACTAGCA
1 CTTTATTGCCTAGCA
53357096 AATTTTATGT
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
40 2 0.02
41 43 0.51
42 38 0.45
43 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
CTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATACTAGG
Done.