Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 171 of 320
Found at i:56522870 original size:27 final size:27
Alignment explanation
Indices: 56522840--56523329 Score: 538
Period size: 27 Copynumber: 18.2 Consensus size: 27
56522830 GTAATTTCAC
* *
56522840 AATCAAGGGTAAAACGGTAATTCAATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
56522867 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
56522894 AAGT-GAGGGTAAACCAGTAATTCTGTA
1 AA-TCGAGGGTAAAACGGTAATTCTATA
* * * *
56522921 AATCAAGGATAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56522948 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56522975 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
56523002 AA-CTAAGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56523028 AATCGAGGGTAAAATGGTTATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
56523055 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
56523082 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
56523109 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56523136 AATTGAGGGTAAAACGGTGATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56523163 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** * * *
56523190 AATTAAGGGTAAAATGGTAATTTTATG
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56523217 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56523244 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
56523271 AATCGAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
56523298 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
56523325 AATCG
1 AATCG
56523330 GGAGTACTTT
Statistics
Matches: 388, Mismatches: 68, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
26 24 0.06
27 362 0.93
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:56525360 original size:6 final size:6
Alignment explanation
Indices: 56525345--56525488 Score: 120
Period size: 6 Copynumber: 23.8 Consensus size: 6
56525335 AACCAAAATG
* *
56525345 AGAATC AGAATT AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
56525393 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGCC AGAATC AAAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
56525442 AGAATC AGAATC A-ATATT AGTCA-C AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAAT
56525489 TACGTCACAG
Statistics
Matches: 111, Mismatches: 14, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
5 8 0.07
6 95 0.86
7 6 0.05
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:56525454 original size:67 final size:67
Alignment explanation
Indices: 56525371--56525513 Score: 252
Period size: 67 Copynumber: 2.1 Consensus size: 67
56525361 TCAGTAACAG
*
56525371 AATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGC-CAGAAT
1 AATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTACGT-CACAGAAT
56525435 CAA
65 CAA
*
56525438 AATCAGAATCAGAATCAATATTAGTCACAGAATCAGAATCAGAATCAGAATTACGTCACAGAATC
1 AATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTCACAGAATC
56525503 AA
66 AA
56525505 AATCAGAAT
1 AATCAGAAT
56525514 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 1 0.01
67 72 0.99
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.21
Consensus pattern (67 bp):
AATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTCACAGAATC
AA
Found at i:56525668 original size:27 final size:26
Alignment explanation
Indices: 56525631--56525696 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
56525621 AGCATGGCTG
*
56525631 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
56525657 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
56525684 CCAGAATCAGATA
1 CCAGAA-CAGATA
56525697 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:56525701 original size:27 final size:27
Alignment explanation
Indices: 56525631--56525704 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
56525621 AGCATGGCTG
* *
56525631 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
56525657 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
56525684 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
56525705 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:56525711 original size:27 final size:27
Alignment explanation
Indices: 56525655--56525712 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
56525645 GTGACAGAGT
* * *
56525655 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
56525682 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
56525709 CACC
1 CACC
56525713 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:56525917 original size:22 final size:22
Alignment explanation
Indices: 56525869--56525927 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
56525859 GTAAATATGT
*
56525869 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
56525891 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
56525913 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
56525928 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:56526096 original size:27 final size:26
Alignment explanation
Indices: 56526015--56526097 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
56526005 TCGATCGGTC
* * *
56526015 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGCCAGAGCCACCAG
56526041 ATACAGATATTGTGCCAGAGCCACCAG
1 A-ACAGATATTGTGCCAGAGCCACCAG
* * *
56526068 AACAGATATCTGTGGCATAGCCACTAG
1 AACAGATAT-TGTGCCAGAGCCACCAG
56526095 AAC
1 AAC
56526098 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGCCAGAGCCACCAG
Found at i:56526488 original size:54 final size:54
Alignment explanation
Indices: 56526298--56526490 Score: 253
Period size: 54 Copynumber: 3.6 Consensus size: 54
56526288 GGAAAATGAC
* * *
56526298 AATTTTACCCCACAAGGGTATCTC-GATAATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGGT
* * *
56526352 ATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * * *
56526406 ACTTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGA
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
*
56526460 AATTCTACCCTACAAGGGTATTTTAGTAATT
1 AATTCTACCCTACAAGGGTATTTCAGTAATT
56526491 TCACAATTAA
Statistics
Matches: 120, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (54 bp):
AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:56526490 original size:27 final size:27
Alignment explanation
Indices: 56526298--56526490 Score: 217
Period size: 27 Copynumber: 7.1 Consensus size: 27
56526288 GGAAAATGAC
* * *
56526298 AATTTTACCCCACAAGGGTATCTC-GAT
1 AATTCTACCCTACAAGGGTATTTCAG-T
* *
56526325 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* *
56526352 ATTTCTACCCTACAAGGGTATTTCAAT
1 AATTCTACCCTACAAGGGTATTTCAGT
* **
56526379 AATTCTACCCTACAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * *
56526406 ACTTCTATCCTATAAGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
* * *
56526433 AATTCTACCCTATAGGGGTATTTCAGA
1 AATTCTACCCTACAAGGGTATTTCAGT
*
56526460 AATTCTACCCTACAAGGGTATTTTAGT
1 AATTCTACCCTACAAGGGTATTTCAGT
56526487 AATT
1 AATT
56526491 TCACAATTAA
Statistics
Matches: 138, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 137 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCAGT
Found at i:56526533 original size:27 final size:27
Alignment explanation
Indices: 56526500--56526954 Score: 518
Period size: 27 Copynumber: 17.1 Consensus size: 27
56526490 TTCACAATTA
* *
56526500 AGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * *
56526527 AGGGTAAAACGATAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * * *
56526554 AGGGTAAACCAGCAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * **
56526581 AGGGTAAAACGATAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
56526608 AGGGTAAAATGGT-ATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
**
56526634 AGGGTAAAATAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
56526661 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
** *
56526688 AGGGTAAAATAGTAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
56526715 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
56526742 AGGGTAAAACGGTAATT-TATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
56526768 AGGGT-AAATGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
56526794 AGGGTAAAATGGTAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
56526821 AGGGTAAAACGGCAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
56526848 AGGGTAAAATGGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
56526875 AGGGTAAAACCGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
56526902 AGGGT-AAATGGTAATT-T-TAAAATCG
1 AGGGTAAAACGGTAATTCTGT-AAATCG
56526927 AGGGT-AAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
56526953 AG
1 AG
56526955 AGTACTTTGG
Statistics
Matches: 370, Mismatches: 44, Indels: 29
0.84 0.10 0.07
Matches are distributed among these distances:
24 1 0.00
25 32 0.09
26 72 0.19
27 261 0.71
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:56526612 original size:134 final size:132
Alignment explanation
Indices: 56526500--56526950 Score: 504
Period size: 134 Copynumber: 3.4 Consensus size: 132
56526490 TTCACAATTA
* * *
56526500 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATTGAGGGTAAACCA
1 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACA
* * *
56526565 GCAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAATCGAGGGTAAAATGGTATTCTGTAA
66 GCAATTCTGTAAATCGAGGGTAAAACGATAATTCTACAAATCGAGGGTAAAATGGTAAT-T-TAA
56526630 ATCG
129 ATCG
* * *
56526634 AGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
1 AGGGTAAAATGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAAC
* * * * *
56526698 AGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTAT
65 AGCAATTCTGTAAATC-GAGGGTAAAACGATAATTCTACAAATCGAGGGTAAAATGGTAA-TT-T
56526762 AAATCG
127 AAATCG
* * * * * *
56526768 AGGGT-AAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAACG
1 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACA
* * ** **
56526832 GCAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAACCGTAATTCTGT
66 GCAATTCTGTAAATCGAGGGTAAAACGATAATTCTACAAATC-GAGGGTAAAATGGTAA-T-T-T
56526896 AAATCG
127 AAATCG
*
56526902 AGGGT-AAATGGTAATT-T-TAAAATCGAGGGT-AAACGGTAATTCTGTAAAT
1 AGGGTAAAATGGTAATTCTGT-AAATCGAGGGTAAAACGATAATTCTGTAAAT
56526951 CGAGAGTACT
Statistics
Matches: 276, Mismatches: 33, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
132 18 0.07
133 113 0.41
134 144 0.52
135 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (132 bp):
AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACA
GCAATTCTGTAAATCGAGGGTAAAACGATAATTCTACAAATCGAGGGTAAAATGGTAATTTAAAT
CG
Found at i:56526822 original size:160 final size:160
Alignment explanation
Indices: 56526500--56526954 Score: 648
Period size: 160 Copynumber: 2.8 Consensus size: 160
56526490 TTCACAATTA
* * * * * *
56526500 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAA-CGATAATTTTGTAAATTGAGGGTAAACC
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTGTAAACTGAGGGTAAAAC
* * * *
56526564 AGCAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAATCGAGGGTAAAATGGT-ATTCTGT
65 AGTAATTCTGTAAATCGAGGGTAAAACGGTAA-TTTATAAATCGAGGGT-AAATGGTAATTCTGT
*
56526628 AAATCGAGGGTAAAATAGTAATTCTGTAAACTG
128 AAATCGAGGGTAAAATAGTAATTCTATAAACTG
* * *
56526661 AGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACA
* *
56526726 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTATAAATCGAGGGTAAATGGTAATTCTATAAA
66 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTATAAATCGAGGGTAAATGGTAATTCTGTAAA
*
56526791 TCGAGGGTAAAATGGTAATTCTATAAACTG
131 TCGAGGGTAAAATAGTAATTCTATAAACTG
* * *
56526821 AGGGTAAAACGGCAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTGAGGGTAAAACC
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACA
* *
56526886 GTAATTCTGTAAATCGAGGGT-AAATGGTAATTT-TAAAATCGAGGGTAAACGGTAATTCTGTAA
66 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTAT-AAATCGAGGGTAAATGGTAATTCTGTAA
56526949 ATCGAG
130 ATCGAG
56526955 AGTACTTTGG
Statistics
Matches: 265, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
158 1 0.00
159 50 0.19
160 132 0.50
161 81 0.31
162 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (160 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACA
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTATAAATCGAGGGTAAATGGTAATTCTGTAAA
TCGAGGGTAAAATAGTAATTCTATAAACTG
Found at i:56527929 original size:51 final size:51
Alignment explanation
Indices: 56527855--56528094 Score: 284
Period size: 51 Copynumber: 4.7 Consensus size: 51
56527845 AACCATTTGA
*
56527855 TACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGG
* *
56527906 TACGCATAGTAGCCTGCCCTTAGTACTACACATGTGATCGAAACTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGG
* * * ** * *
56527957 TACGCATAGTAGACTGCACTTAGTACTACACATGCGA-CCTAACAATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGG
* * * * * ***
56528007 TACACGTAGTAGCCTGCACTTAGTACTACATATGTGACCTAAAACTGTCTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGATC-GAAACTATCGGG
* *
56528059 AACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTG
56528095 TTCTCACAAC
Statistics
Matches: 162, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
50 41 0.25
51 83 0.51
52 38 0.23
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGG
Found at i:56528017 original size:101 final size:102
Alignment explanation
Indices: 56527861--56528043 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 102
56527851 TTGATACACG
* * * * * *
56527861 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCCCT
1 TAGTAGACTGCACTTAGTACTACACATGCGATCCAAACAATCGGGTACACATAGTAGCCTGCACT
56527926 TAGTACTACACATGTGATCGAAACTATCGGGTACGCA
66 TAGTACTACACATGTGATCGAAACTATCGGGTACGCA
* * *
56527963 TAGTAGACTGCACTTAGTACTACACATGCGA-CCTAACAATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGACTGCACTTAGTACTACACATGCGATCCAAACAATCGGGTACACATAGTAGCCTGCACT
*
56528027 TAGTACTACATATGTGA
66 TAGTACTACACATGTGA
56528044 CCTAAAACTG
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
101 42 0.59
102 29 0.41
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (102 bp):
TAGTAGACTGCACTTAGTACTACACATGCGATCCAAACAATCGGGTACACATAGTAGCCTGCACT
TAGTACTACACATGTGATCGAAACTATCGGGTACGCA
Found at i:56528067 original size:102 final size:102
Alignment explanation
Indices: 56527825--56528092 Score: 288
Period size: 102 Copynumber: 2.6 Consensus size: 102
56527815 GGGTGTTACA
* * ** * *
56527825 TAGTACTACACATGTGACC-TAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACATG
1 TAGTACTACACATGTGACCAAAACTATCGGAAACACATAGTAGCCTGCACTTAGTACTACACATG
* * * * *
56527889 TGATCGAAACTATCGGGTACGCATAGTAGCCTGCCCT
66 CGATCCAAACAATCGGGTACACATAGTAGCCTGCACT
* * ** * *
56527926 TAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGACTGCACTTAGTACTACACATG
1 TAGTACTACACATGTGACCAAAACTATCGGAAACACATAGTAGCCTGCACTTAGTACTACACATG
* * *
56527991 CGA-CCTAACAATCTGGTACACGTAGTAGCCTGCACT
66 CGATCCAAACAATCGGGTACACATAGTAGCCTGCACT
* * ** *
56528027 TAGTACTACATATGTGACCTAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACAT
1 TAGTACTACACATGTGACC-AAAACTATCGGAAACACATAGTAGCCTGCACTTAGTACTACACAT
56528092 G
65 G
56528093 TGTTCTCACA
Statistics
Matches: 137, Mismatches: 28, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
101 61 0.45
102 76 0.55
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (102 bp):
TAGTACTACACATGTGACCAAAACTATCGGAAACACATAGTAGCCTGCACTTAGTACTACACATG
CGATCCAAACAATCGGGTACACATAGTAGCCTGCACT
Found at i:56553908 original size:55 final size:55
Alignment explanation
Indices: 56553807--56553930 Score: 144
Period size: 55 Copynumber: 2.3 Consensus size: 55
56553797 GTTAATCTGA
* *
56553807 CAGGTTCGACCACGAGTTCTAGACACAGGCGTGATGAATGCCCGTGTTATTTTCT
1 CAGGTTCAACCACGAGTTCTAGACACAGGCGTGATGAATGCCCGTGTTATTTTCG
* * * * *
56553862 CAGGTTCAACCATG-GTTCTAAGACACAGGGGTG-TCGTATGCTCGTGTTATTTTGG
1 CAGGTTCAACCACGAGTTCT-AGACACAGGCGTGAT-GAATGCCCGTGTTATTTTCG
*
56553917 CAGGTTCACCCACG
1 CAGGTTCAACCACG
56553931 GTCCCTATAC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
54 6 0.10
55 52 0.90
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (55 bp):
CAGGTTCAACCACGAGTTCTAGACACAGGCGTGATGAATGCCCGTGTTATTTTCG
Found at i:56558430 original size:13 final size:13
Alignment explanation
Indices: 56558412--56558443 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
56558402 CTATTAGAAG
56558412 ATCTCTTTCTAAC
1 ATCTCTTTCTAAC
56558425 ATCTCTTTCTAAC
1 ATCTCTTTCTAAC
56558438 ATCTCT
1 ATCTCT
56558444 AGCTTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (13 bp):
ATCTCTTTCTAAC
Found at i:56564318 original size:22 final size:22
Alignment explanation
Indices: 56564269--56564311 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
56564259 GAATCTCACC
56564269 ATTTTCACATTTCAACTCAAGG
1 ATTTTCACATTTCAACTCAAGG
56564291 ATTTTCACATTTCAACTCAAG
1 ATTTTCACATTTCAACTCAAG
56564312 TGTTTTCTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (22 bp):
ATTTTCACATTTCAACTCAAGG
Found at i:56565732 original size:101 final size:101
Alignment explanation
Indices: 56565607--56565788 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 101
56565597 CTGGTACACG
* *
56565607 TAGTAGCCTGCACTTAGTACTACACACGTGACTTATGC-ATCTGATACACGTAGTAGGCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAT-CAATCTGATACACGTAGTAGGCTGCACT
*
56565671 TAATACTACACGCGTGATCGAAGTTAATGGGTATGTA
65 TAATACTACACACGTGATCGAAGTTAATGGGTATGTA
* * * *
56565708 TAGTGGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACACGTAGTAGGCTGCACTT
*
56565773 AGTACTACACACGTGA
66 AATACTACACACGTGA
56565789 CCTAACCATC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 1 0.01
101 71 0.99
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACACGTAGTAGGCTGCACTT
AATACTACACACGTGATCGAAGTTAATGGGTATGTA
Found at i:56565812 original size:151 final size:151
Alignment explanation
Indices: 56565560--56565944 Score: 601
Period size: 151 Copynumber: 2.5 Consensus size: 151
56565550 GTACACATAT
*
56565560 TAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* ** * * *
56565625 ACTACACACGTGACTTATGCATCTGATACACGTAGTAGGCTGCACTTAATACTACACGCGTGATC
66 ACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAATACTACACACATGATC
** * *
56565690 GAAGTTAAT-GGGTATGTATAG
131 GAAACT-ATCGGGTAAGTATAA
* *
56565711 TGGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
*
56565776 ACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATC
66 ACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAATACTACACACATGATC
56565841 GAAACTATCGGGTAAGTATAA
131 GAAACTATCGGGTAAGTATAA
* *
56565862 TAGCCTGCACTTAGTACTACACATGGGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
*
56565927 ACTACACACGCGACCTAA
66 ACTACACACGTGACCTAA
56565945 AACTGTCTTA
Statistics
Matches: 214, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
150 2 0.01
151 212 0.99
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
ACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAATACTACACACATGATC
GAAACTATCGGGTAAGTATAA
Found at i:56565944 original size:50 final size:50
Alignment explanation
Indices: 56565550--56565944 Score: 384
Period size: 50 Copynumber: 7.9 Consensus size: 50
56565540 AAGCTCTTTT
* * * * * *
56565550 GTACACATATTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
* *
56565600 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTATGC-ATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTA-ACAATCTG
* * * * * * * *
56565650 ATACACGTAGTAGGCTGCACTTAATACTACACGCGTGATCGAAGTTAAT-GG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATCTG
**** * * * *
56565701 GTATGTATAGTGGCCTGCACTTAGTACTACACATGCGACCTATCAATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
* *
56565751 GTACACGTAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
* * ** * *
56565801 ATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAACTATCGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTG
* * *
56565852 GTA-A-GTATAATAGCCTGCACTTAGTACTACACATGGGACCTAACAATCTG
1 GTACACG--TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
*
56565902 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
56565945 AACTGTCTTA
Statistics
Matches: 273, Mismatches: 62, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
49 4 0.01
50 197 0.72
51 69 0.25
52 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG
Found at i:56565986 original size:151 final size:149
Alignment explanation
Indices: 56565560--56565988 Score: 581
Period size: 151 Copynumber: 2.8 Consensus size: 149
56565550 GTACACATAT
*
56565560 TAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* ** * * *
56565625 ACTACACACGTGACTTATGCATCTGATACACGTAGTAGGCTGCACTTAATACTACACGCGTGATC
66 ACTACACACGTGACCTAAACATCTGATACACGTAGTAGCCTGCACTTAGTACTACA--CATGATC
** * *
56565690 GAAGTTAATGGGTATGTATAG
129 GAAACTAATGGGTAAGTATAA
* *
56565711 TGGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
*
56565776 ACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATC
66 ACTACACACGTGACCTAAACATCTGATACACGTAGTAGCCTGCACTTAGTACT--ACACATGATC
56565841 GAAACT-ATCGGGTAAGTATAA
129 GAAACTAAT-GGGTAAGTATAA
* *
56565862 TAGCCTGCACTTAGTACTACACATGGGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* * * * * * *
56565927 ACTACACACGCGACCTAAAACTGTCTTAAACACATAGTAGCCTACACATAGTACTACACATG
66 ACTACACACGTGACCT-AAAC-ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATG
56565989 TGTTTATCTC
Statistics
Matches: 248, Mismatches: 25, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
150 2 0.01
151 213 0.86
152 3 0.01
153 30 0.12
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (149 bp):
TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
ACTACACACGTGACCTAAACATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGATCGA
AACTAATGGGTAAGTATAA
Found at i:56567325 original size:13 final size:13
Alignment explanation
Indices: 56567309--56567333 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56567299 TTAAATCAGT
56567309 TAATTAGTTTAAA
1 TAATTAGTTTAAA
56567322 TAATTAGTTTAA
1 TAATTAGTTTAA
56567334 TAAACAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:56573715 original size:13 final size:13
Alignment explanation
Indices: 56573697--56573721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56573687 AATCACAAAT
56573697 AAATACACATATC
1 AAATACACATATC
56573710 AAATACACATAT
1 AAATACACATAT
56573722 TTTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:56576212 original size:12 final size:11
Alignment explanation
Indices: 56576155--56576241 Score: 61
Period size: 11 Copynumber: 7.5 Consensus size: 11
56576145 TGAATCCTCC
*
56576155 TATTTTTTTATT
1 TATTTTATT-TT
56576167 TAGTTTTATTTT
1 TA-TTTTATTTT
56576179 TATTTTATTTT
1 TATTTTATTTT
*
56576190 CT-TTTTCTTTT
1 -TATTTTATTTT
*
56576201 TCTTTTGATTTT
1 TATTTT-ATTTT
*
56576213 TATTTTCATTTC
1 TATTTT-ATTTT
*
56576225 AATTATTA-TTT
1 TATT-TTATTTT
56576236 TATTTT
1 TATTTT
56576242 GAAAGACATA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
10 3 0.05
11 26 0.43
12 24 0.39
13 8 0.13
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:56576213 original size:7 final size:6
Alignment explanation
Indices: 56576155--56576241 Score: 56
Period size: 6 Copynumber: 15.0 Consensus size: 6
56576145 TGAATCCTCC
* * *
56576155 TATTTT T-TTATT TAGTTT TATTTT TA-TTT TA-TTT TCTTTT TCTTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* * * * * *
56576201 TCTTTT GATTTT TATTTT CATTTC AATTAT TA-TTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
56576242 GAAAGACATA
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
5 15 0.23
6 48 0.75
7 1 0.02
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:56579169 original size:13 final size:13
Alignment explanation
Indices: 56579153--56579177 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56579143 TTAAATCAGT
56579153 TAATTAGTTTAAA
1 TAATTAGTTTAAA
56579166 TAATTAGTTTAA
1 TAATTAGTTTAA
56579178 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:56581053 original size:13 final size:13
Alignment explanation
Indices: 56581035--56581061 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56581025 ACTCGGCAAG
56581035 GACACGCCCGTGT
1 GACACGCCCGTGT
56581048 GACACGCCCGTGT
1 GACACGCCCGTGT
56581061 G
1 G
56581062 CGATTGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:56584576 original size:39 final size:40
Alignment explanation
Indices: 56584531--56584662 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
56584521 GCTCCTCGTT
* * *
56584531 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
56584571 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
56584610 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
56584650 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
56584663 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.43
40 46 0.57
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:56584724 original size:41 final size:41
Alignment explanation
Indices: 56584647--56584724 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
56584637 TTAGTATCTC
* * *
56584647 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
56584688 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
56584725 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:56592306 original size:39 final size:40
Alignment explanation
Indices: 56592261--56592392 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
56592251 GCTCCTCGTT
* * *
56592261 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
56592301 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
56592340 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
56592380 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
56592393 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.43
40 46 0.57
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:56592454 original size:41 final size:41
Alignment explanation
Indices: 56592377--56592454 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
56592367 TTAGTATCTC
* * *
56592377 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
56592418 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
56592455 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:56598966 original size:27 final size:27
Alignment explanation
Indices: 56598935--56599112 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
56598925 TAAATTGTAC
56598935 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
56598962 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56598988 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
56599016 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
56599044 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56599071 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
56599098 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56599113 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:56599049 original size:82 final size:81
Alignment explanation
Indices: 56598936--56599091 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
56598926 AAATTGTACA
*
56598936 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
56599000 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
56599017 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
56599082 TGCGAGTTGA
65 TGCGAATTGA
56599092 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:56599103 original size:82 final size:81
Alignment explanation
Indices: 56598932--56599112 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
56598922 GATTAAATTG
*
56598932 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
56598997 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
56599013 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
56599077 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
56599095 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
56599113 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:56604347 original size:1 final size:1
Alignment explanation
Indices: 56604341--56604390 Score: 100
Period size: 1 Copynumber: 50.0 Consensus size: 1
56604331 GTGAAGAGTG
56604341 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
56604391 TCATTTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:56604398 original size:1 final size:1
Alignment explanation
Indices: 56604394--56604444 Score: 102
Period size: 1 Copynumber: 51.0 Consensus size: 1
56604384 AAAAAAATCA
56604394 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
56604445 GAAGGGGGGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:56607121 original size:27 final size:27
Alignment explanation
Indices: 56607091--56607194 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
56607081 CACGTTAGGT
*
56607091 AAGAAAAGCCTTTGTGGTGTAATATGA
1 AAGAAAAGCCTTTGTGGCGTAATATGA
* * *
56607118 AAGAAAA-AC-ATGTGGCATAATATGA
1 AAGAAAAGCCTTTGTGGCGTAATATGA
* *
56607143 AAGAAAAGCCTTTGTGGCGCAAAATGA
1 AAGAAAAGCCTTTGTGGCGTAATATGA
* *
56607170 AAGAAAAGCCTTTGTAGTGTAATAT
1 AAGAAAAGCCTTTGTGGCGTAATAT
56607195 TGAAGGAATT
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
25 20 0.32
26 2 0.03
27 40 0.65
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (27 bp):
AAGAAAAGCCTTTGTGGCGTAATATGA
Found at i:56619737 original size:24 final size:24
Alignment explanation
Indices: 56619710--56619807 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
56619700 AAGGCTGTCA
56619710 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
56619734 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
56619758 GGAGAGGATTTAGGAGCTAATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
56619782 GGAGAATATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
56619807 G
1 G
56619808 AGCAGAAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.37, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:56627654 original size:12 final size:12
Alignment explanation
Indices: 56627637--56627732 Score: 52
Period size: 12 Copynumber: 8.0 Consensus size: 12
56627627 TGAAAGGCTG
*
56627637 TTAGGAGAAGAT
1 TTAGGAGATGAT
*
56627649 TTAGGAGCTGA-
1 TTAGGAGATGAT
* *
56627660 TAAGGAAGAGGAT
1 TTAGG-AGATGAT
*
56627673 TTAGGAGCTGA-
1 TTAGGAGATGAT
* *
56627684 TAAGGGAGAGGAT
1 TTA-GGAGATGAT
*
56627697 TTAGGAGCTGAT
1 TTAGGAGATGAT
** *
56627709 AAAGGAGAAGAT
1 TTAGGAGATGAT
*
56627721 TTAGGAGCTGAT
1 TTAGGAGATGAT
56627733 CAAGGAGCAG
Statistics
Matches: 58, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.23
Consensus pattern (12 bp):
TTAGGAGATGAT
Found at i:56627739 original size:24 final size:23
Alignment explanation
Indices: 56627639--56627739 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 23
56627629 AAAGGCTGTT
56627639 AGGAGAAGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
*
56627662 AGGAAGAGGATTTAGGAGCTGATA
1 AGG-AGAAGATTTAGGAGCTGATA
*
56627686 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
56627711 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
56627735 AGGAG
1 AGGAG
56627740 CAGGAGTTGG
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 3 0.04
24 65 0.90
25 4 0.06
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:56636797 original size:47 final size:47
Alignment explanation
Indices: 56636742--56636925 Score: 305
Period size: 47 Copynumber: 3.9 Consensus size: 47
56636732 TTTAGGATTT
** * * *
56636742 TATGTGATGAATGTGAATGTGTATATATGTGAAAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
* *
56636789 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
56636836 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
56636883 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAAT
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAAT
56636926 TGCTGTGATA
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
Found at i:56636818 original size:25 final size:25
Alignment explanation
Indices: 56636790--56636915 Score: 74
Period size: 25 Copynumber: 5.3 Consensus size: 25
56636780 CGAATGGCCA
56636790 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
56636815 ATGTGAT-AAGGCCG-A-ATGGC--CT
1 ATGTGATGAATG-TGAACAT-GCATAT
56636837 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
56636862 ACGTGAT-AAGGCCG-A-ATGGC--CT
1 ATGTGATGAATG-TGAACAT-GCATAT
56636884 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
56636909 ACGTGAT
1 ATGTGAT
56636916 AAGGCCGAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 28
0.63 0.13 0.24
Matches are distributed among these distances:
22 17 0.24
23 16 0.22
24 16 0.22
25 23 0.32
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:56636842 original size:22 final size:22
Alignment explanation
Indices: 56636814--56636890 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
56636804 AACATGCATA
56636814 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * *
56636836 TATGTGATGAATG-TGAACAT-GCA
1 TATGTGAT-AAGGCCG-A-ATGGCC
56636859 TATACGTGATAAGGCCGAATGGCC
1 TAT--GTGATAAGGCCGAATGGCC
56636883 TATGTGAT
1 TATGTGAT
56636891 GAATGTGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 14 0.33
23 11 0.26
24 11 0.26
25 6 0.14
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (22 bp):
TATGTGATAAGGCCGAATGGCC
Found at i:56636945 original size:66 final size:66
Alignment explanation
Indices: 56636864--56636991 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 66
56636854 ATGCATATAC
* * *
56636864 GTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATTGC
1 GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATTGC
56636929 T
66 T
* **
56636930 GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAAT
1 GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAAT
56636992 GGCCAATGTG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.24
Consensus pattern (66 bp):
GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATTGC
T
Found at i:56636954 original size:113 final size:113
Alignment explanation
Indices: 56636816--56637038 Score: 338
Period size: 113 Copynumber: 2.0 Consensus size: 113
56636806 CATGCATATA
* * *
56636816 TGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGG
1 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATGG
* * *
56636881 CCTATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATTGC
66 CCAATGTGATGAATATGAACATGCATATACGTGATAAAGCCGAATTGC
* **
56636929 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATGG
* * *
56636994 CCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAAT
66 CCAATGTGATGAATATGAACATGCATATACGTGATAAAGCCGAAT
56637039 GGCTAGTGTG
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 98 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (113 bp):
TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATGG
CCAATGTGATGAATATGAACATGCATATACGTGATAAAGCCGAATTGC
Found at i:56636986 original size:47 final size:47
Alignment explanation
Indices: 56636929--56637041 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
56636919 GCCGAATTGC
* * * *
56636929 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAGCATGCATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAACATGAACATGCATATA
* *
56636976 TGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAACATGAACATGCATATA
* *
56637023 TGTGGTAAAGCCGAATGGC
1 TGTGATAAGGCCGAATGGC
56637042 TAGTGTGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAACATGAACATGCATATA
Found at i:56637306 original size:37 final size:37
Alignment explanation
Indices: 56637212--56637312 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
56637202 ATTCCGCGTG
* * * *
56637212 AGACTCGATGACTACGTGTGAAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
56637249 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
* *
56637286 AGACCCGATAACTTCGTGTGGAGATTT
1 AGACCCGATGACTACGTGTGGAGATTT
56637313 CGTCTGAGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
Found at i:56638890 original size:40 final size:40
Alignment explanation
Indices: 56638581--56638878 Score: 497
Period size: 40 Copynumber: 7.5 Consensus size: 40
56638571 GAGAATTGAG
* *
56638581 AGTGATATATCCGGGCTAAATCCTGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
56638621 AGTGATATATCCGGGCTAAATCCCGAAGAACATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
56638661 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
56638701 AGTGATATATCCAGGCTAAATCCCGAAGAGCATTTTTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
56638741 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
56638781 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
56638821 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
56638861 AGTGATGTATCCGGGCTA
1 AGTGATATATCCGGGCTA
56638879 GGTCCTGAAG
Statistics
Matches: 239, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 239 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:56642722 original size:47 final size:47
Alignment explanation
Indices: 56642668--56642994 Score: 537
Period size: 47 Copynumber: 7.0 Consensus size: 47
56642658 CTAGGATTTT
** *
56642668 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
56642715 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
56642762 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
56642809 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
56642856 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
56642903 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
56642950 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
56642995 TAGTGTGAAA
Statistics
Matches: 261, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 261 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:56643263 original size:37 final size:37
Alignment explanation
Indices: 56643165--56643265 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
56643155 ATTTCGCGTG
* *
56643165 AGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
56643202 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
* *
56643239 AGACCCGATAACTTCGTGTGGAGATTT
1 AGACCCGATGACTACGTGTGGAGATTT
56643266 CGTCTGAGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
Found at i:56644753 original size:28 final size:29
Alignment explanation
Indices: 56644700--56644757 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
56644690 GTGAGCATGA
*
56644700 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
56644729 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
56644757 A
1 A
56644758 GATACAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:56645726 original size:28 final size:29
Alignment explanation
Indices: 56645613--56645727 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
56645603 GTGAGCATGA
* *
56645613 ATATGAATGCGA-TTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
56645641 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
56645670 ATAT-ACATGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
56645699 ATATGAATATGA-TTGGGCTTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
56645727 A
1 A
56645728 GATACAGGTA
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 26 0.33
29 51 0.65
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:56650192 original size:40 final size:40
Alignment explanation
Indices: 56650145--56650367 Score: 333
Period size: 40 Copynumber: 5.6 Consensus size: 40
56650135 CTACTCGCTC
* *
56650145 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
56650185 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* * *
56650225 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* *
56650265 AATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
56650305 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACA
56650345 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
56650368 TTATCATCCG
Statistics
Matches: 168, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 167 0.99
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
Found at i:56658311 original size:40 final size:40
Alignment explanation
Indices: 56658219--56658474 Score: 331
Period size: 40 Copynumber: 6.5 Consensus size: 40
56658209 AGCCAAGTAA
* * *
56658219 CTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATGC
1 CTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGC
* **
56658257 CTTCGGGACATAGCCCGGATATAGTAACTCGCACCCATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
56658297 CTTCGGGACTTAGCCCGGATATAGTAGCTCCCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
56658337 CTTCGGGACTTAGCCCGGATGTAATAACTCGCACAACTTC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
56658377 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
56658417 CTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
56658457 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
56658475 TTATCATCCG
Statistics
Matches: 191, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 11 0.06
39 18 0.09
40 162 0.85
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:56661716 original size:29 final size:28
Alignment explanation
Indices: 56661661--56661740 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 28
56661651 GTGAGCATGA
* *
56661661 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
56661689 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
56661718 ATATGAATATGATTGGGCTTAAT
1 ATATGAATGTGATTGGGCCTAAT
56661741 AGGCGAGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 21 0.47
29 24 0.53
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:56662064 original size:26 final size:26
Alignment explanation
Indices: 56662030--56662081 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
56662020 ATCCATATCT
56662030 AGGGAAAATT-ACCGAAATACCCCTA
1 AGGGAAAATTGACCGAAATACCCCTA
* *
56662055 AGGGAGAAATTGATCGAATTACCCCTA
1 AGGGA-AAATTGACCGAAATACCCCTA
56662082 GGTGTCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 5 0.22
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (26 bp):
AGGGAAAATTGACCGAAATACCCCTA
Found at i:56664721 original size:16 final size:17
Alignment explanation
Indices: 56664700--56664735 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
56664690 GTAATGCCCT
*
56664700 AAAAATCTCGAAA-CCC
1 AAAAATCCCGAAATCCC
56664716 AAAAATCCCGAAATCCC
1 AAAAATCCCGAAATCCC
56664733 AAA
1 AAA
56664736 CTTTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.53, C:0.31, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAAATCCCGAAATCCC
Found at i:56666363 original size:28 final size:29
Alignment explanation
Indices: 56666253--56666367 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
56666243 GTGAGAATGA
* *
56666253 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
56666281 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
56666310 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
56666339 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
56666367 A
1 A
56666368 GATACATGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:56672308 original size:19 final size:19
Alignment explanation
Indices: 56672286--56672347 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
56672276 TTGATATAAG
56672286 ATATGTGATACAATATGAT
1 ATATGTGATACAATATGAT
* *
56672305 ATATTTGAT---ATA--AG
1 ATATGTGATACAATATGAT
56672319 ATATGTGATACAATATGAT
1 ATATGTGATACAATATGAT
*
56672338 ATATTTGATA
1 ATATGTGATA
56672348 TGTTTTAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
14 9 0.27
16 3 0.09
17 3 0.09
19 18 0.55
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (19 bp):
ATATGTGATACAATATGAT
Found at i:56672308 original size:33 final size:33
Alignment explanation
Indices: 56672270--56672348 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
56672260 TTTGTGATGT
56672270 ATATATTTGATATAAGATATGTGATACAATATG
1 ATATATTTGATATAAGATATGTGATACAATATG
56672303 ATATATTTGATATAAGATATGTGATACAATATG
1 ATATATTTGATATAAGATATGTGATACAATATG
56672336 ATATATTTGATAT
1 ATATATTTGATAT
56672349 GTTTTAGTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.42, C:0.03, G:0.14, T:0.42
Consensus pattern (33 bp):
ATATATTTGATATAAGATATGTGATACAATATG
Found at i:56683718 original size:79 final size:81
Alignment explanation
Indices: 56683609--56683791 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
56683599 TACTCGTTCA
* *
56683609 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
56683672 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
56683689 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
56683752 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
56683768 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
56683792 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:56683791 original size:40 final size:40
Alignment explanation
Indices: 56683588--56683791 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
56683578 CGGAATTTAA
** *
56683588 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56683628 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56683668 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
56683707 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
56683747 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
56683787 CCGGA
1 CCGGA
56683792 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:56686228 original size:39 final size:39
Alignment explanation
Indices: 56686071--56686240 Score: 171
Period size: 40 Copynumber: 4.3 Consensus size: 39
56686061 GGACTAAGAT
* * * *
56686071 CCGAAGGCATTTGTGCGAGATAC-AAATTCTGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * * *
56686111 CCGAAGGCCTTTGTGCGAGATACTAAATCTGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
* * *
56686151 GCGAAGGCATTCGTGCGAGTTATTAAATCCAGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
56686191 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
56686230 CCGAAGGCATT
1 CCGAAGGCATT
56686241 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 37 0.33
40 71 0.63
41 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:56694094 original size:80 final size:79
Alignment explanation
Indices: 56694010--56694181 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
56694000 GGACTAAGAT
*
56694010 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
56694074 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
56694090 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
56694155 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
56694169 CCGAAGGCATTTG
1 CCGAAGGCATTTG
56694182 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:56694161 original size:39 final size:39
Alignment explanation
Indices: 56693957--56694179 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
56693947 TTGAATGCTG
* * * * *
56693957 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
56693997 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
56694036 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
56694077 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
56694117 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
56694156 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
56694180 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:56694199 original size:79 final size:80
Alignment explanation
Indices: 56694037--56694214 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
56694027 AGATACAAAT
* * * *
56694037 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
56694102 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
56694117 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
56694181 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
56694196 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
56694215 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:56700571 original size:43 final size:42
Alignment explanation
Indices: 56700510--56700659 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 42
56700500 AATGCCAACA
* * * *
56700510 TCCCAGACGTGGTCTTACATGTAATCAGATATCGAT-ACCT-TTG
1 TCCCAGACATGGTCTTACACGTAATCAAATA-CGATGA--TAATG
*
56700553 TCCCAGACATGGTCTTACACGAAATCAAATACGATGATAATG
1 TCCCAGACATGGTCTTACACGTAATCAAATACGATGATAATG
*
56700595 TCCCAGACATGGTCTTACACGTAAATCATAAGT-CGATG-TCAGTG
1 TCCCAGACATGGTCTTACACGT-AATCA-AA-TACGATGAT-AATG
* *
56700639 TCCTAGACGTGGTCTTACACG
1 TCCCAGACATGGTCTTACACG
56700660 ATAACACATA
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 34 0.37
44 29 0.32
45 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAATCAAATACGATGATAATG
Found at i:56700607 original size:42 final size:43
Alignment explanation
Indices: 56700551--56700660 Score: 145
Period size: 44 Copynumber: 2.6 Consensus size: 43
56700541 TCGATACCTT
56700551 TGTCCCAGACATGGTCTTACACGAAATCA-AA-TACGATGAT-AA
1 TGTCCCAGACATGGTCTTACACGAAATCATAAGT-CGATG-TCAA
*
56700593 TGTCCCAGACATGGTCTTACACGTAAATCATAAGTCGATGTCAG
1 TGTCCCAGACATGGTCTTACACG-AAATCATAAGTCGATGTCAA
* *
56700637 TGTCCTAGACGTGGTCTTACACGA
1 TGTCCCAGACATGGTCTTACACGA
56700661 TAACACATAT
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
42 23 0.38
43 8 0.13
44 29 0.48
45 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGAAATCATAAGTCGATGTCAA
Found at i:56703723 original size:46 final size:46
Alignment explanation
Indices: 56703673--56703845 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
56703663 TTGCGCATCT
56703673 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
56703719 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * *
56703766 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
56703811 TGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56703846 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.54
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:56703826 original size:93 final size:93
Alignment explanation
Indices: 56703667--56703838 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
56703657 GGATGGTTGC
* * * *
56703667 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAGT
56703732 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
56703760 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGTCC-GAACTCGTTGAG
*
56703824 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
56703839 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:56706694 original size:86 final size:86
Alignment explanation
Indices: 56706549--56706808 Score: 511
Period size: 86 Copynumber: 3.0 Consensus size: 86
56706539 AATCTAAGTA
56706549 CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAAACCGAAAGGCA
1 CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAAACCGAAAGGCA
56706614 TAACTAAAAACTCATAATGGC
66 TAACTAAAAACTCATAATGGC
56706635 CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAAACCGAAAGGCA
1 CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAAACCGAAAGGCA
56706700 TAACTAAAAACTCATAATGGC
66 TAACTAAAAACTCATAATGGC
*
56706721 CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAATCCGAAAGGCA
1 CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAAACCGAAAGGCA
56706786 TAACTAAAAACTCATAATGGC
66 TAACTAAAAACTCATAATGGC
56706807 CG
1 CG
56706809 TACCTTGTTC
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 173 1.00
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (86 bp):
CGGTCTGAATATCTGATTCATCAAGTCCATAAAGATAGCAGGTGCATTAGTCAAACCGAAAGGCA
TAACTAAAAACTCATAATGGC
Found at i:56710750 original size:42 final size:43
Alignment explanation
Indices: 56710681--56710785 Score: 142
Period size: 42 Copynumber: 2.4 Consensus size: 43
56710671 TCCCACAGGT
**
56710681 AATCAAATATCGATGCCTCTGTCCCAGACAAGGTCTTACACG-A
1 AATCAAATA-CGATGCCAATGTCCCAGACAAGGTCTTACACGTA
*
56710724 AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATACGATGCCAATGTCCCAGACAAGGTCTTACACGTA
56710767 AATCATAAGT-CGATGCCAA
1 AATCA-AA-TACGATGCCAA
56710786 CATCCAAGAC
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
42 29 0.52
43 15 0.27
44 11 0.20
45 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
AATCAAATACGATGCCAATGTCCCAGACAAGGTCTTACACGTA
Found at i:56710796 original size:44 final size:42
Alignment explanation
Indices: 56710706--56710807 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 42
56710696 CCTCTGTCCC
* ** *
56710706 AGACAAGGTCTTACACGAAATCAAATACGATGCCAATGTCCC
1 AGACATGGTCTTACACGAAATCAAATACGATGCCAACATCCA
56710748 AGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAACATCCA
1 AGACATGGTCTTACACG-AAATCA-AA-TACGATGCCAACATCCA
*
56710792 AGACATTGTCTTACAC
1 AGACATGGTCTTACAC
56710808 AATAACACAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 16 0.31
43 6 0.12
44 29 0.56
45 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAAATACGATGCCAACATCCA
Found at i:56726347 original size:27 final size:27
Alignment explanation
Indices: 56726317--56726494 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
56726307 ATATTGAGCC
* *
56726317 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
56726344 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
56726371 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
56726399 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
56726426 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
56726453 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
56726480 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56726495 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:56726429 original size:55 final size:54
Alignment explanation
Indices: 56726317--56726494 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
56726307 ATATTGAGCC
* * * * *
56726317 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
56726371 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
56726426 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
56726480 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56726495 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:56741752 original size:29 final size:29
Alignment explanation
Indices: 56741689--56741756 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
56741679 TAATCAACCG
*
56741689 CGCACACTTAATGCCATGTACTTTAAACT
1 CGCACACTTAATGCCATGCACTTTAAACT
* * **
56741718 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAATGCCATGCACTTT-AAACT
56741747 CGCACACTTA
1 CGCACACTTA
56741757 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAATGCCATGCACTTTAAACT
Found at i:56741926 original size:29 final size:29
Alignment explanation
Indices: 56741863--56741930 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
56741853 TAATCAACCG
56741863 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
56741892 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
56741921 CGCACACTTA
1 CGCACACTTA
56741931 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:56742079 original size:29 final size:30
Alignment explanation
Indices: 56742032--56742110 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
56742022 CTTAATAATC
56742032 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
56742062 AACTCGCACACTAAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
56742091 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
56742111 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 31 0.76
30 4 0.10
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:56742104 original size:174 final size:174
Alignment explanation
Indices: 56741578--56742079 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
56741568 AACTCAAGGT
* *
56741578 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
56741643 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAATGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
56741708 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
56741752 ACTTACCTTTTCCGCTGTCCAAATTCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
56741817 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
56741882 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
56741926 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
56741991 GAAAATATATATTGGGTTCGCACACATAATGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
* *
56742056 ACTTTAAACTCGCACACTAAGTGC
131 ACTTTAAACTCACACACTTAGTGC
56742080 TGTACAATTT
Statistics
Matches: 315, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 315 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:56747154 original size:30 final size:30
Alignment explanation
Indices: 56747120--56747177 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
56747110 TAGGCACTTC
*
56747120 CACACGGGT-GATCCACACTCCCATGTGTGA
1 CACACGGGTAGA-CCACACGCCCATGTGTGA
*
56747150 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCATGTGT
56747178 CATGGCCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCATGTGTGA
Found at i:56751573 original size:12 final size:12
Alignment explanation
Indices: 56751556--56751590 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
56751546 TAAATTGCTA
56751556 ATGTGAAATGTT
1 ATGTGAAATGTT
56751568 ATGTGAAATGTT
1 ATGTGAAATGTT
56751580 ATGTGAAATGT
1 ATGTGAAATGT
56751591 GTTAACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.40
Consensus pattern (12 bp):
ATGTGAAATGTT
Found at i:56751712 original size:39 final size:39
Alignment explanation
Indices: 56751623--56751932 Score: 505
Period size: 39 Copynumber: 8.0 Consensus size: 39
56751613 AAGACACTGA
56751623 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG-TGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
56751661 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
56751700 AAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTGTTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
56751739 AAATATATCCGGGCCAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
56751778 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
56751817 AAATGTATCCGGGCCAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
56751856 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
56751895 AAATGTATCCGGGTTAAAGTCTCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
56751933 ATAATATAAT
Statistics
Matches: 252, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
38 35 0.14
39 217 0.86
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:56761791 original size:15 final size:15
Alignment explanation
Indices: 56761768--56761797 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56761758 TTAAGAATTT
*
56761768 CTCCTTTTTTATTGA
1 CTCCCTTTTTATTGA
56761783 CTCCCTTTTTATTGA
1 CTCCCTTTTTATTGA
56761798 GATTTAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.07, T:0.57
Consensus pattern (15 bp):
CTCCCTTTTTATTGA
Found at i:56775328 original size:19 final size:19
Alignment explanation
Indices: 56775306--56775344 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
56775296 TTCAAAGTAA
*
56775306 AACACCATTATACACTTGT
1 AACACAATTATACACTTGT
56775325 AACACAATTATACACTTGT
1 AACACAATTATACACTTGT
56775344 A
1 A
56775345 CCTACTCTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (19 bp):
AACACAATTATACACTTGT
Found at i:56778470 original size:5 final size:5
Alignment explanation
Indices: 56778460--56778492 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
56778450 TAATCACATC
56778460 TTATT TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTATT TTA
56778493 CAATAGCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:56781083 original size:49 final size:49
Alignment explanation
Indices: 56780952--56781280 Score: 225
Period size: 49 Copynumber: 6.8 Consensus size: 49
56780942 TGATGTGTTT
* * * * *
56780952 GCTAGTGTAAGACCTATCTGGGACATGGCTTCTGCGC-CAATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTCAAGATATGAGA
* * * **
56781001 GCCAGTGTAAGACCTGTTTGGGACACGAAATCGGCCTCAAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGATATG-AGA
** * * *
56781050 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGG-CTTGAGGTGTG-TA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGATATGAGA
** * *
56781097 --T-GTGTAAGACCTGTCTGGGACATGGCATC-AACAC-AGACAAGTGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGA-TA-TGAGA
* * * * * ** *
56781143 GCCAGTGTAAGATCTGTCTAGGACGTGGCATTGGCCTTGATATATG-GAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGATATGAG-A
* *
56781192 G-TCAGTGTAAGACCTGTCTGGGACATGGCATC-GACAC-AGATAAGTGAGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGAT-A-TGAGA
*
56781241 GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAA
56781281 TGCATGGAAG
Statistics
Matches: 211, Mismatches: 49, Indels: 38
0.71 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 29 0.14
45 3 0.01
46 1 0.00
47 4 0.02
48 12 0.06
49 149 0.71
50 8 0.04
51 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGATATGAGA
Found at i:56781288 original size:98 final size:97
Alignment explanation
Indices: 56780952--56781320 Score: 314
Period size: 98 Copynumber: 3.8 Consensus size: 97
56780942 TGATGTGTTT
* * *
56780952 GCTAGTGTAAGACCTATCTGGGACATGGC-TTCTGCGC-CAATAGAT-GAGAGCCAGTGTAAGAC
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATT-GGC-CTCAAT-GATGGA-AGTCAGTGTAAGAC
* * ** * *
56781014 CTGTTTGGGACACGAAATCGGCCTCAAGAT-A-TGCA-A
62 CTGTCTGGGACATGGCATC-GACAC-AGATAAGTG-AGA
* * *
56781050 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGG-CT---TGA-GG-TGTGTATGTGTAAGACCT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCAATGATGGAAGT-CA-GTGTAAGACCT
* *
56781109 GTCTGGGACATGGCATCAACACAGACAAGTGAGA
64 GTCTGGGACATGGCATCGACACAGATAAGTGAGA
* * * * *
56781143 GCCAGTGTAAGATCTGTCTAGGACGTGGCATTGGCCTTGATAT-ATGGAAGTCAGTGTAAGACCT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCC-TCA-ATGATGGAAGTCAGTGTAAGACCT
56781207 GTCTGGGACATGGCATCGACACAGATAAGTGAGA
64 GTCTGGGACATGGCATCGACACAGATAAGTGAGA
* * *
56781241 GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCAATGCATGGAAGTCAATTTAATACCTG
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCAATG-ATGGAAGTCAGTGTAAGACCTG
* * *
56781306 TTTGGAACATTGCAT
65 TCTGGGACATGGCAT
56781321 TGAATTAGAT
Statistics
Matches: 219, Mismatches: 34, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
91 4 0.02
92 5 0.02
93 59 0.27
94 2 0.01
95 1 0.00
96 3 0.01
97 2 0.01
98 136 0.62
99 5 0.02
100 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (97 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCAATGATGGAAGTCAGTGTAAGACCTGT
CTGGGACATGGCATCGACACAGATAAGTGAGA
Found at i:56785421 original size:37 final size:37
Alignment explanation
Indices: 56785371--56785449 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
56785361 TTATAACGAA
* * *
56785371 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
56785408 GTCTTACCCGGACAAAATCCCCACACGCAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
56785445 GTCTT
1 GTCTT
56785450 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:56785646 original size:47 final size:47
Alignment explanation
Indices: 56785568--56786454 Score: 1225
Period size: 47 Copynumber: 18.4 Consensus size: 47
56785558 CCTTTCGGGA
* * * * * * * *
56785568 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
56785615 CCTGTCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56785662 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
56785709 CTTAAGACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56785756 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
56785803 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56785850 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56785897 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
56785948 CTTATCACACATATACACTTTCACATTCATCATGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56785995 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56786042 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
56786093 CTTATCACATATATACATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC--AC--TTTCACATTCATCACATCGGCCATTAGGC
* * *
56786144 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56786191 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56786238 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
56786289 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
56786340 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56786389 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56786436 CTTATCACACATATACACT
1 CTTATCACATATATACACT
56786455 CTCTTGGCTG
Statistics
Matches: 775, Mismatches: 47, Indels: 36
0.90 0.05 0.04
Matches are distributed among these distances:
47 493 0.64
48 1 0.00
49 68 0.09
50 1 0.00
51 204 0.26
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:56785985 original size:145 final size:145
Alignment explanation
Indices: 56785620--56786454 Score: 1244
Period size: 145 Copynumber: 5.8 Consensus size: 145
56785610 TCGGCCCTGT
*
56785620 CACATAT--ATACACTTTCACATTCATTACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
* ** *
56785683 CACATTCATCGCATCGGCCATTAGGCCTTAAGACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
*
56785748 CATTAGGCCTTATT-
131 TATTAGGCCTTATTA
* *
56785762 -ACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
* *
56785824 CACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
56785889 TATTAGGCCTTATTA
131 TATTAGGCCTTATTA
* * *
56785904 CATATATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
** *
56785969 CACATTCATCATGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
56786034 TATTAGGCCTTATTA
131 TATTAGGCCTTATTA
* *
56786049 CATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACA
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC--AC-
*
56786114 TTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACGT
63 -TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACAT
56786179 CGGCTATTAGGCCTTA-T-
127 CGGCTATTAGGCCTTATTA
* * *
56786196 CACACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATA
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC----A
*
56786259 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATC
62 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCATC
*
56786324 ACATCGGCCATTAGGCCTTA-T-
123 ACATCGGCTATTAGGCCTTATTA
*
56786345 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
*
56786410 CACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
66 CACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
56786455 CTCTTGGCTG
Statistics
Matches: 646, Mismatches: 31, Indels: 31
0.91 0.04 0.04
Matches are distributed among these distances:
141 131 0.20
143 12 0.02
145 280 0.43
147 52 0.08
148 1 0.00
149 120 0.19
151 50 0.08
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (145 bp):
CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC
TATTAGGCCTTATTA
Found at i:56786158 original size:196 final size:193
Alignment explanation
Indices: 56785619--56786452 Score: 1338
Period size: 196 Copynumber: 4.3 Consensus size: 193
56785609 CTCGGCCCTG
* * *
56785619 TCACATATATACACTTTCACATTCATTACATCGGCCATTAGGCCTTATCACATATATAC-ACTTT
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAACTTT
* * *
56785683 CACATTCATCGCATCGGCCATTAGGCCTTA--AGACATAT--ATACACTTTCACATTCATCACAT
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACAT
* *
56785744 CGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
131 CGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
56785807 TCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATAC-ACTTT
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAACTTT
* *
56785871 CACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACAT
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACAT
* **
56785936 CGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCATGTCGGCTATTAGGCCTTA
131 CGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
56785999 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATAC
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC--A-AC
*
56786064 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACATTTTCACATTCATCA
63 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCA
*
56786129 CATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTT
128 CATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
56786194 A
193 A
*
56786195 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATAC
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC--A-AC
56786260 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCA
63 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCA
* *
56786325 CATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCC
128 CATCGGCCATTAGGCCTTATCACACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCC
56786390 TTA
191 TTA
* * *
56786393 TTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
56786453 CTCTCTTGGC
Statistics
Matches: 606, Mismatches: 30, Indels: 12
0.94 0.05 0.02
Matches are distributed among these distances:
188 87 0.14
190 6 0.01
192 137 0.23
196 284 0.47
198 92 0.15
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (193 bp):
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:56790020 original size:40 final size:40
Alignment explanation
Indices: 56789975--56790370 Score: 576
Period size: 40 Copynumber: 9.9 Consensus size: 40
56789965 CGAATACACG
* * * * *
56789975 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
56790015 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
56790055 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
56790095 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
**
56790135 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
56790175 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
56790215 TCACTAGCATGAATGCTTTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* **
56790255 TCACTAGCATGAATGCTCTTCGAGACTTAGCCCGGATTTA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
56790295 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
56790335 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
56790371 CATCATTCAA
Statistics
Matches: 319, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 319 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:56790193 original size:120 final size:120
Alignment explanation
Indices: 56789975--56790370 Score: 666
Period size: 120 Copynumber: 3.3 Consensus size: 120
56789965 CGAATACACG
* * * * * * * * *
56789975 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * *
56790040 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCCCGGATTTATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
56790095 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
56790160 CTTAGCCCGGATTTATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCCCGGATTTATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
56790215 TCACTAGCATGAATGCTTTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGAGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
56790280 CTTAGCCCGGATTTATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 CTTAGCCCGGATTTATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
56790335 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
56790371 CATCATTCAA
Statistics
Matches: 261, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 261 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATTTATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:56790713 original size:29 final size:29
Alignment explanation
Indices: 56790674--56790752 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
56790664 CTTAATAATC
*
56790674 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
56790704 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
56790733 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
56790753 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:56792694 original size:37 final size:37
Alignment explanation
Indices: 56792644--56792722 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
56792634 TTATTACGAA
* * * *
56792644 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
*
56792681 GTCTTACCCGGACAAAATCCCCACAAGCAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
56792718 GTCTT
1 GTCTT
56792723 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
Found at i:56792919 original size:47 final size:47
Alignment explanation
Indices: 56792841--56793484 Score: 894
Period size: 47 Copynumber: 13.4 Consensus size: 47
56792831 CCTTTCGGGA
* * * * * * * *
56792841 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
56792888 CCTGTCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56792935 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
56792982 CTTATCACATATATACACTTTCACATTCATCGA-ATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATC-ACATCGGCCATTAGGC
* * *
56793029 CTTATTACATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
56793076 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56793123 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56793170 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56793221 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56793268 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
56793319 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
56793370 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
56793419 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
56793466 CTTATCACACATATACACT
1 CTTATCACATATATACACT
56793485 CTCTTGGCTG
Statistics
Matches: 551, Mismatches: 32, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.00
47 363 0.66
48 1 0.00
49 62 0.11
50 1 0.00
51 115 0.21
53 4 0.01
55 4 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:56805140 original size:46 final size:48
Alignment explanation
Indices: 56805061--56805188 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 48
56805051 CATTGGGTGG
* * * * *
56805061 TATGCGAGCCAGTGTAACAAATGTTTGGCACATGCATCGG-C-CATGT
1 TATGAGAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCAGGT
*
56805107 TATGAGAGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTCAGGT
1 TATGAGAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCAGGT
* * *
56805155 TAT-ACAAGCTAGTGTAAGACCTGTTTGGAACATG
1 TATGA-GAGCCAGTGTAAGACATGTTTGGAACATG
56805189 GCGTCAGCAT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 35 0.51
47 2 0.03
48 32 0.46
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACATGTTTGGAACATGCATCGGCCTCAGGT
Found at i:56805285 original size:49 final size:49
Alignment explanation
Indices: 56805222--56805338 Score: 137
Period size: 49 Copynumber: 2.4 Consensus size: 49
56805212 GTAAGAATTG
* *
56805222 TCTAGGACATGGCATCAACAC-CGATAGATGAGAGCCAATATAAGACCTT
1 TCTAGGACATGGCATCAAC-CTCGATAGATGAAAGCCAATATAAGACCTA
* ** * * *
56805271 TCTTGGACATGGCATCGGCCTCGATATATGAAAGTCAATGTAAGACCTA
1 TCTAGGACATGGCATCAACCTCGATAGATGAAAGCCAATATAAGACCTA
*
56805320 TCTAGGACACGGCATCAAC
1 TCTAGGACATGGCATCAAC
56805339 TTTAATGTGC
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 1 0.02
49 54 0.98
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (49 bp):
TCTAGGACATGGCATCAACCTCGATAGATGAAAGCCAATATAAGACCTA
Found at i:56806755 original size:27 final size:27
Alignment explanation
Indices: 56806717--56806777 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
56806707 GTTTCCAAAG
56806717 TATGATTTGGGCCTCGTAGGCCCATAT
1 TATGATTTGGGCCTCGTAGGCCCATAT
56806744 TATGATTTGGGCCTCGTAGGCCCATAT
1 TATGATTTGGGCCTCGTAGGCCCATAT
*
56806771 TAGGATT
1 TATGATT
56806778 CAACAGACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (27 bp):
TATGATTTGGGCCTCGTAGGCCCATAT
Found at i:56808699 original size:24 final size:24
Alignment explanation
Indices: 56808667--56808722 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
56808657 TAATCAATCG
*
56808667 AATTTTCTAAAAAGTATTTTCCCA
1 AATTTTCTAAAAAGTATTTTCCAA
56808691 AATTTTCTAAAAAGTATTTTCCAA
1 AATTTTCTAAAAAGTATTTTCCAA
56808715 AATTTTCT
1 AATTTTCT
56808723 TTCTGTGCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.38, C:0.14, G:0.04, T:0.45
Consensus pattern (24 bp):
AATTTTCTAAAAAGTATTTTCCAA
Found at i:56821561 original size:42 final size:42
Alignment explanation
Indices: 56821444--56821597 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 42
56821434 GATATGTGAT
* * * * *
56821444 TTCGTGTAAGACCATATCTGGGAC-GTTGGCATTGATTTGTAAT
1 TTCGTGTAAGACCATGTCTGGGACAG-TGGCA-TCATATATAAG
* *
56821487 TTACGTGTAAGACCATGTTTGAGACA-TCGGCATCATATATAAG
1 TT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCATATATAAG
* * *
56821530 TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATATGT-GG
1 TTCGTGTAAGACCATGTCTGGGACAGTGGCATC-ATATATAAG
* *
56821572 TTACATGTAAGACCACGTCTGGGACA
1 TT-CGTGTAAGACCATGTCTGGGACA
56821598 TTGGTGTTGT
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 29 0.32
43 38 0.42
44 23 0.26
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTCTGGGACAGTGGCATCATATATAAG
Found at i:56828080 original size:28 final size:28
Alignment explanation
Indices: 56828040--56828109 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
56828030 GCAATCAAAT
* *
56828040 ATGGTACTCAGTGTACGAAATATTGAA-A
1 ATGGCACTTAGTGTACGAAATATT-AAGA
* *
56828068 ATGGCACTTAGTGTGCGAGATATTAAGA
1 ATGGCACTTAGTGTACGAAATATTAAGA
**
56828096 ATAACACTTAGTGT
1 ATGGCACTTAGTGT
56828110 GCAATCAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTAAGA
Found at i:56828315 original size:34 final size:33
Alignment explanation
Indices: 56828277--56828340 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
56828267 ATAATATTAT
** *
56828277 CGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTG
1 CGGGCTTCAAGCCTAGCAGGC-AAAATGCCGGTG
56828311 CGGGCTTCAAGCCTAGCAGGCAAAATGCCG
1 CGGGCTTCAAGCCTAGCAGGCAAAATGCCG
56828341 ATGAATGAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 8 0.30
34 19 0.70
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.17
Consensus pattern (33 bp):
CGGGCTTCAAGCCTAGCAGGCAAAATGCCGGTG
Found at i:56836164 original size:26 final size:26
Alignment explanation
Indices: 56836135--56836186 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
56836125 AATTATCTAG
56836135 TATAATTTCTTTTTTAAACAAACTAA
1 TATAATTTCTTTTTTAAACAAACTAA
56836161 TATAATTTCTTTTTTAAACAAACTAA
1 TATAATTTCTTTTTTAAACAAACTAA
56836187 CATGTTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (26 bp):
TATAATTTCTTTTTTAAACAAACTAA
Found at i:56836200 original size:25 final size:26
Alignment explanation
Indices: 56836136--56836201 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 26
56836126 ATTATCTAGT
** *
56836136 ATAATTTCTTTTTTAAACAAACTAAT
1 ATAATTTCAATTTTAAACAAACTAAC
**
56836162 ATAATTTCTTTTTTAAACAAACTAAC
1 ATAATTTCAATTTTAAACAAACTAAC
*
56836188 AT-GTTTCAATTTTA
1 ATAATTTCAATTTTA
56836202 CCATTTATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 9 0.25
26 27 0.75
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
ATAATTTCAATTTTAAACAAACTAAC
Found at i:56839790 original size:11 final size:11
Alignment explanation
Indices: 56839770--56839803 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
56839760 AATTTTGAAC
*
56839770 TTACCATTTCA
1 TTACCTTTTCA
56839781 TTACCTTTTC-
1 TTACCTTTTCA
56839791 TTACCTTTTCA
1 TTACCTTTTCA
56839802 TT
1 TT
56839804 TGTATAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (11 bp):
TTACCTTTTCA
Found at i:56840284 original size:33 final size:34
Alignment explanation
Indices: 56840205--56840286 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
56840195 ATATTGTCAG
56840205 TCCAACCGAACACACAAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACAAGATGCTCACACGAGCCAA
** * * * * *
56840240 TCCCTCAAACACACTA-ATGCTCATACGATCTAA
1 TCCAACCAACACACAAGATGCTCACACGAGCCAA
56840273 TCCAACCAACACAC
1 TCCAACCAACACAC
56840287 CAAATAGAGT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
33 25 0.68
34 8 0.22
35 4 0.11
ACGTcount: A:0.39, C:0.38, G:0.09, T:0.15
Consensus pattern (34 bp):
TCCAACCAACACACAAGATGCTCACACGAGCCAA
Found at i:56845099 original size:27 final size:26
Alignment explanation
Indices: 56845062--56845173 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
56845052 AGCATGGCTG
* *
56845062 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
56845088 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* *
56845116 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
56845143 CTAGATCAGATAATTGTGACATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
56845170 CCAG
1 CCAG
56845174 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:56845153 original size:54 final size:54
Alignment explanation
Indices: 56845064--56845170 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
56845054 CATGGCTGCC
* *
56845064 AGAACAGATAATGTGACAAAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGACAGAGCCACT
* * * * *
56845118 AGAACAGATATATGTGGCAGAGCCACTAGAT-CAGATAATTGTGACATAGCCAC
1 AGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCGTGACAGAGCCAC
56845171 CAGGACGCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 29 0.64
55 16 0.36
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (54 bp):
AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGACAGAGCCACT
Found at i:56852890 original size:27 final size:27
Alignment explanation
Indices: 56852860--56852966 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
56852850 GGCTGCCAAA
* * *
56852860 ACAGATAATGTGACAGAGTCACTAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
* *
56852887 ACAGACAATCGTGGTAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
56852914 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
56852942 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
56852967 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.76
28 15 0.22
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:56852962 original size:54 final size:54
Alignment explanation
Indices: 56852859--56852966 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
56852849 TGGCTGCCAA
* * *
56852859 AACAGATAATGTGACAGAGTCACTAGATACAGACAATCGTGGTAGAGCCACCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGACAATCGTGGCAGAGCCACCAG
* * * *
56852913 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGACAATCGTGGCAGAGCCACCAG
56852967 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGACAATCGTGGCAGAGCCACCAG
Found at i:56855953 original size:30 final size:30
Alignment explanation
Indices: 56855919--56855976 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
56855909 TAGGTACTTC
56855919 CACACAGGT-GATCCACACGCCCATGTGTGA
1 CACACAGGTAGA-CCACACGCCCATGTGTGA
* *
56855949 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACAGGTAGACCACACGCCCATGTGT
56855977 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.24, C:0.34, G:0.26, T:0.16
Consensus pattern (30 bp):
CACACAGGTAGACCACACGCCCATGTGTGA
Found at i:56856907 original size:71 final size:71
Alignment explanation
Indices: 56856788--56856923 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 71
56856778 GGATTCTTGG
* ** * *
56856788 GACATGTCATCGACACAGATAAGTGAGAGCCAGTGTAAGATTTGTCTGGAACGTGGCATCGGCCT
1 GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGAACATGGCATCGGCCT
56856853 TGATAT
66 TGATAT
* *
56856859 GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGGACATGGCATTGGCCT
1 GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGAACATGGCATCGGCCT
56856924 CGATGCATGG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (71 bp):
GACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTCTCTGGAACATGGCATCGGCCT
TGATAT
Found at i:56860265 original size:49 final size:49
Alignment explanation
Indices: 56860206--56860334 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 49
56860196 TTGTTGTGTG
* * **
56860206 TCAGTGTAAGACTTGTCTAGGACATGGCATTGACAC-CGATAGATGTGA-
1 TCAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTCGATAGATGAAAC
* * * *
56860254 TCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCGATATATGAAAC
1 T-CAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAC
*
56860304 TCAGTGTAAGACCTGTCTAGGACACGGCATC
1 TCAGTGTAAGACCTGTCTAGGACATGGCATC
56860335 AACTTTAATG
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
48 2 0.03
49 64 0.96
50 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (49 bp):
TCAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAC
Found at i:56866801 original size:27 final size:27
Alignment explanation
Indices: 56866771--56866948 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
56866761 ATATTGAGCC
* *
56866771 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
56866798 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
56866825 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
56866853 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
56866880 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
56866907 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
56866934 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56866949 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:56866910 original size:82 final size:81
Alignment explanation
Indices: 56866792--56866947 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
56866782 TGCTATATAA
* * *
56866792 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
56866857 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
56866874 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
56866938 CACTTAGTGC
65 CACTTAGTGC
56866948 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:56874845 original size:27 final size:27
Alignment explanation
Indices: 56874815--56874992 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
56874805 ATATTGAGCC
* *
56874815 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
56874842 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
56874869 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
56874897 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
56874924 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
56874951 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
56874978 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56874993 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:56874954 original size:82 final size:81
Alignment explanation
Indices: 56874836--56874991 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
56874826 TGCTATATAA
* * *
56874836 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
56874901 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
56874918 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
56874982 CACTTAGTGC
65 CACTTAGTGC
56874992 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Done.