Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 172 of 320
Found at i:56876962 original size:27 final size:27
Alignment explanation
Indices: 56876931--56877108 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
56876921 TAAATTGTAC
56876931 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
56876958 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56876984 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
56877012 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
56877040 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
56877067 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
56877094 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
56877109 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:56877045 original size:82 final size:81
Alignment explanation
Indices: 56876932--56877087 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
56876922 AAATTGTACA
* *
56876932 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
56876996 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
56877013 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
56877078 TGCGAGTTGA
65 TGCGAATTGA
56877088 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:56877099 original size:82 final size:81
Alignment explanation
Indices: 56876928--56877108 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
56876918 GATTAAATTG
* *
56876928 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
56876993 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
56877009 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
56877073 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
56877091 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
56877109 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:56880214 original size:15 final size:15
Alignment explanation
Indices: 56880158--56880222 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
56880148 TAAAGATAAC
*
56880158 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
56880172 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
56880187 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
56880202 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
56880217 AAGAAA
1 AAGAAA
56880223 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:56880224 original size:30 final size:31
Alignment explanation
Indices: 56880158--56880226 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
56880148 TAAAGATAAC
*
56880158 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
56880188 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
56880217 AAGAAACCCA
1 AAGAAACCCA
56880227 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:56893827 original size:15 final size:15
Alignment explanation
Indices: 56893770--56893849 Score: 69
Period size: 15 Copynumber: 5.4 Consensus size: 15
56893760 CAAAGATAAC
*
56893770 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
56893784 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
56893799 GAGAAA-CCTGGAATA
1 AAGAAATCC-AGAATA
56893814 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
56893829 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
56893844 AAGAAA
1 AAGAAA
56893850 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 13 0.25
15 35 0.66
16 5 0.09
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:56893858 original size:15 final size:15
Alignment explanation
Indices: 56893781--56893858 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
56893771 AGAAAACCGA
56893781 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
56893796 ATAGAGAAA-CCTGG
1 ATAAAGAAATCCAAG
56893810 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
*
56893825 AATAAA-AAGATCCAGG
1 -ATAAAGAA-ATCCAAG
*
56893841 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
56893856 ATA
1 ATA
56893859 CGATACTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
14 5 0.10
15 40 0.80
16 5 0.10
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:56896912 original size:93 final size:93
Alignment explanation
Indices: 56896797--56896967 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
56896787 GCCCCTAAGT
*
56896797 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
56896862 CGAGTTCGGATGCCTGGTTACATCTCAC
66 CGAGTTCGGATGCCTGGTTACATCTCAC
* * *
56896890 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
56896955 CGAGTTCGGATGC
66 CGAGTTCGGATGC
56896968 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTGGTTACATCTCAC
Found at i:56896964 original size:46 final size:46
Alignment explanation
Indices: 56896792--56896964 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
56896782 AACCCGCCCC
* * *
56896792 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
56896838 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTGGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CAT--TTGCATCCA
* *
56896886 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
56896931 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
56896965 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 60 0.56
47 29 0.27
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:56900121 original size:13 final size:13
Alignment explanation
Indices: 56900103--56900128 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56900093 TGAATTGACA
56900103 TGTATGAAAATTT
1 TGTATGAAAATTT
56900116 TGTATGAAAATTT
1 TGTATGAAAATTT
56900129 AGTCGTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TGTATGAAAATTT
Found at i:56902666 original size:42 final size:43
Alignment explanation
Indices: 56902610--56902702 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
56902600 GATTTATGTA
** * *
56902610 TAAGACCATGTCTGGGATATCGGCATCG-TATTTG-ATTTCGTG
1 TAAGACCATGTCTGGGATAGAGGCATCGATA-TTGAATTACATG
*
56902652 TAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGATAGAGGCATCGATATTGAATTACATG
56902695 TAAGACCA
1 TAAGACCA
56902703 CGTCCAGGAC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
42 28 0.65
43 15 0.35
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTGGGATAGAGGCATCGATATTGAATTACATG
Found at i:56903919 original size:65 final size:65
Alignment explanation
Indices: 56903810--56903938 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
56903800 AGTCTGAATT
* *
56903810 AAATGTTATGTCTGTCTAGTAATTCCTTGTAACCCTAATCCGATGTCGGTTATAGGTTAGGGGTA
1 AAATGTTATGTCTGTCTAGTAATGCCTCGTAACCCTAATCCGATGTCGGTTATAGGTTAGGGGTA
* * * *
56903875 AAATGTTATGTCTGTTTGGTAATGCCTCGTAACCCTAATTCGATGTCGGTTATGGGTTAGGGGT
1 AAATGTTATGTCTGTCTAGTAATGCCTCGTAACCCTAATCCGATGTCGGTTATAGGTTAGGGGT
56903939 GTTACATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (65 bp):
AAATGTTATGTCTGTCTAGTAATGCCTCGTAACCCTAATCCGATGTCGGTTATAGGTTAGGGGTA
Found at i:56909784 original size:21 final size:20
Alignment explanation
Indices: 56909753--56909793 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
56909743 AAGGTACTAA
* *
56909753 CATATACATTATATGACTTT
1 CATATACATTAAATCACTTT
56909773 CATATAACATTAAATCACTTT
1 CATAT-ACATTAAATCACTTT
56909794 AAGTACACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.41
Consensus pattern (20 bp):
CATATACATTAAATCACTTT
Found at i:56910834 original size:19 final size:20
Alignment explanation
Indices: 56910801--56910838 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
56910791 TTATAATATC
*
56910801 ATAAATAATATGAATAAAAA
1 ATAAATAATAGGAATAAAAA
56910821 ATAAA-AATAGGAATAAAA
1 ATAAATAATAGGAATAAAA
56910839 GAAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
ATAAATAATAGGAATAAAAA
Found at i:56911927 original size:25 final size:25
Alignment explanation
Indices: 56911893--56912005 Score: 103
Period size: 24 Copynumber: 4.6 Consensus size: 25
56911883 AAGGTTATGC
56911893 GGCACTATGTGTGC-AAAAACTAAGT
1 GGCACTATGTGTGCGAAAAA-TAAGT
* *
56911918 GGCACTATGTGTGCG-AGATTACA-T
1 GGCACTATGTGTGCGAAAAATA-AGT
*
56911942 GGCACTATATGTGCGAGAAAAT--GT
1 GGCACTATGTGTGCGA-AAAATAAGT
*
56911966 GGCACTATGTGTGCGAATAAGTAAG-
1 GGCACTATGTGTGCGAA-AAATAAGT
*
56911991 AGCACTATGTGTGCG
1 GGCACTATGTGTGCG
56912006 GACTTTCAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.01
24 36 0.50
25 31 0.43
26 4 0.06
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (25 bp):
GGCACTATGTGTGCGAAAAATAAGT
Found at i:56911946 original size:49 final size:48
Alignment explanation
Indices: 56911870--56911981 Score: 129
Period size: 49 Copynumber: 2.3 Consensus size: 48
56911860 AGAAATTTCA
* * ** *
56911870 GCACTATGTGTGCAAGGTTATGCGGCACTATGTGTGC-A-AAAACTAAGTG
1 GCACTATGTGTGCGAGATTACACGGCACTATATGTGCGAGAAAA-T--GTG
*
56911919 GCACTATGTGTGCGAGATTACATGGCACTATATGTGCGAGAAAATGTG
1 GCACTATGTGTGCGAGATTACACGGCACTATATGTGCGAGAAAATGTG
56911967 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
56911982 ATAAGTAAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 18 0.33
49 31 0.56
50 2 0.04
51 4 0.07
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (48 bp):
GCACTATGTGTGCGAGATTACACGGCACTATATGTGCGAGAAAATGTG
Found at i:56913292 original size:50 final size:50
Alignment explanation
Indices: 56913214--56913470 Score: 266
Period size: 50 Copynumber: 5.1 Consensus size: 50
56913204 TGGGTATTAC
*
56913214 ATACAAGATCAAATATAATATCACATATGTGCTTACCCATATGGCCGAAT
1 ATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGGCCGAAT
* * * * *
56913264 ATGCAAGACCAAATTTAATATCACATATGTGCTTAGCTATATGGACGAAT
1 ATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGGCCGAAT
* * * * * * *
56913314 TTGCAAGATCAAATTTAACATCACATATGTACTTACTTATATGGCTGAAT
1 ATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGGCCGAAT
* * *
56913364 ATACAA-ATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCAAAT
1 ATACAAGA-TCAAATATAATATCACATATGTGCTTACCTAT-ATGGCCGAAT
* * * * * * * *
56913414 ATTCAAGATCCAAGACAACATCACATATGTACATACCTATGTGGCCGAAT
1 ATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGGCCGAAT
56913464 ATACAAG
1 ATACAAG
56913471 GTCATTTAGC
Statistics
Matches: 169, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.01
50 165 0.98
51 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (50 bp):
ATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGGCCGAAT
Found at i:56919891 original size:43 final size:43
Alignment explanation
Indices: 56919835--56919960 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
56919825 TATCATATAT
* * * ** *
56919835 CAATGCCACTGTCCCAAACAAGGTCTTATGCGAAATCATAATA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATA
** * * *
56919878 CGGTGTCAATGTCCCAGACATGGTTTTACACGTAATCACAATA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATA
* *
56919921 CAATGCCAATGTCCCAGACATGGTCTTACATGCAATCACA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
56919961 TCTCGGTAAC
Statistics
Matches: 66, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATA
Found at i:56920172 original size:21 final size:21
Alignment explanation
Indices: 56920146--56920193 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
56920136 GAACTTACCT
56920146 TAGTCGTAGAAATAATGAAAG
1 TAGTCGTAGAAATAATGAAAG
56920167 TAGTCGTAGAAATAATGAAAG
1 TAGTCGTAGAAATAATGAAAG
56920188 TAGTCG
1 TAGTCG
56920194 ATTAATCCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (21 bp):
TAGTCGTAGAAATAATGAAAG
Found at i:56921024 original size:8 final size:8
Alignment explanation
Indices: 56921011--56921035 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
56921001 TAATGTTTTT
56921011 AAAAGGTA
1 AAAAGGTA
56921019 AAAAGGTA
1 AAAAGGTA
56921027 AAAAGGTA
1 AAAAGGTA
56921035 A
1 A
56921036 TTAAAGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (8 bp):
AAAAGGTA
Found at i:56921942 original size:28 final size:28
Alignment explanation
Indices: 56921911--56921989 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
56921901 GACATCAAAT
* *
56921911 ATGGCACTTAGTGTACAAAATATTGAGG
1 ATGGCACTTAGTGTGCAAAATATTGAGA
* ** *
56921939 ATGGCACTTAATGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTGCAAAATATTGAGA
56921967 ATGGCACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCAAAATAT
56921990 CAAATGATTC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAATATTGAGA
Found at i:56925646 original size:30 final size:29
Alignment explanation
Indices: 56925610--56925679 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 29
56925600 CTTTTCTACA
56925610 AGTTCAGTTTAGCTCACCGAGCTCACCTTC
1 AGTTCAG-TTAGCTCACCGAGCTCACCTTC
56925640 AGTTC----AGCTCACCGAGCTCACCTTC
1 AGTTCAGTTAGCTCACCGAGCTCACCTTC
56925665 AGTTCAAGTTAGCTC
1 AGTTC-AGTTAGCTC
56925680 CCTTGTAGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
25 25 0.71
30 10 0.29
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (29 bp):
AGTTCAGTTAGCTCACCGAGCTCACCTTC
Found at i:56925648 original size:25 final size:25
Alignment explanation
Indices: 56925612--56925670 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
56925602 TTTCTACAAG
*
56925612 TTCAGTTTAGCTCACCGAGCTCACC
1 TTCAGTTCAGCTCACCGAGCTCACC
56925637 TTCAGTTCAGCTCACCGAGCTCACC
1 TTCAGTTCAGCTCACCGAGCTCACC
56925662 TTCAGTTCA
1 TTCAGTTCA
56925671 AGTTAGCTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.20, C:0.36, G:0.15, T:0.29
Consensus pattern (25 bp):
TTCAGTTCAGCTCACCGAGCTCACC
Found at i:56927395 original size:11 final size:11
Alignment explanation
Indices: 56927379--56927408 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
56927369 ATACAAGTTA
56927379 AAAAAAATTCG
1 AAAAAAATTCG
56927390 AAAAAAATTCG
1 AAAAAAATTCG
56927401 AAAAAAAT
1 AAAAAAAT
56927409 AAAAAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:56932692 original size:46 final size:46
Alignment explanation
Indices: 56932639--56932811 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
56932629 TGGTTGAGCA
*
56932639 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
56932685 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
56932732 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
56932778 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
56932812 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:56932795 original size:93 final size:93
Alignment explanation
Indices: 56932636--56932806 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
56932626 GGATGGTTGA
* *
56932636 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
56932701 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
56932729 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
56932794 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
56932807 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:56933073 original size:19 final size:20
Alignment explanation
Indices: 56933036--56933073 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
56933026 ATAAGGTGGT
56933036 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
56933056 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
56933074 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:56940233 original size:46 final size:46
Alignment explanation
Indices: 56940183--56940355 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
56940173 TGGTTGAGCA
*
56940183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
56940229 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
56940276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
56940322 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
56940356 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:56940339 original size:93 final size:93
Alignment explanation
Indices: 56940180--56940350 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
56940170 GGATGGTTGA
* *
56940180 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
56940245 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
56940273 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
56940338 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
56940351 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:56940616 original size:19 final size:20
Alignment explanation
Indices: 56940579--56940616 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
56940569 ATAAGGTGGT
56940579 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
56940599 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
56940617 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:56941599 original size:39 final size:39
Alignment explanation
Indices: 56941545--56941626 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
56941535 TCTTGTAACT
56941545 ATGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
1 ATGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
56941584 ATGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
1 ATGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
56941623 ATGA
1 ATGA
56941627 TTTGAAGTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.18
Consensus pattern (39 bp):
ATGACGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAA
Found at i:56943472 original size:15 final size:15
Alignment explanation
Indices: 56943452--56943499 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
56943442 TCAAAGATGG
56943452 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
56943467 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
56943481 GTTTATGGATATAAA
1 GTTTATGGATATGAA
56943496 GTTT
1 GTTT
56943500 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:56943486 original size:14 final size:14
Alignment explanation
Indices: 56943446--56943489 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
56943436 AAGGATTCAA
56943446 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
56943460 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
56943475 AGATGGGTTTATGG
1 AGATGGGTTTATGG
56943489 A
1 A
56943490 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:56943515 original size:29 final size:29
Alignment explanation
Indices: 56943446--56943505 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
56943436 AAGGATTCAA
*
56943446 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
56943475 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
56943504 AG
1 AG
56943506 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:56945327 original size:37 final size:37
Alignment explanation
Indices: 56945277--56945356 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
56945267 CTTATTACGA
* *
56945277 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
56945314 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
56945351 GGTCTT
1 AGTCTT
56945357 TAGAGTCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:56945546 original size:47 final size:47
Alignment explanation
Indices: 56945495--56945625 Score: 183
Period size: 47 Copynumber: 2.8 Consensus size: 47
56945485 TTATACACTT
* *
56945495 TCACATTCATCACATCGGCCATTAGGCCTTATCTCACATACACATGC
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCACATACACATGC
* * ** *
56945542 TCACATTCATCACATTGGCCACTCGGCCTTATCTCATATATGCATGT
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCACATACACATGC
*
56945589 TCACATTCATCACATTGGCCATTCGGCCCTAT-TCACA
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCACA
56945626 CATATACACT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 4 0.05
47 70 0.95
ACGTcount: A:0.25, C:0.33, G:0.11, T:0.31
Consensus pattern (47 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCTCACATACACATGC
Found at i:56949432 original size:13 final size:13
Alignment explanation
Indices: 56949399--56949442 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
56949389 TTAAAGAAGC
56949399 AACTCATTAAATTA
1 AACTCATTAAA-TA
* *
56949413 AATTCATCAAATA
1 AACTCATTAAATA
*
56949426 AACTCATTTAATA
1 AACTCATTAAATA
56949439 AACT
1 AACT
56949443 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (13 bp):
AACTCATTAAATA
Found at i:56959834 original size:19 final size:19
Alignment explanation
Indices: 56959810--56959849 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
56959800 AGCTCCCTTG
56959810 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
56959829 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
56959848 TA
1 TA
56959850 TCAGCTCACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:56964272 original size:41 final size:41
Alignment explanation
Indices: 56964215--56964298 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
56964205 AGAAAATGAA
56964215 TACCTTACCTGATACGAACCATCTCGGGAAGAGTCGAGTCG
1 TACCTTACCTGATACGAACCATCTCGGGAAGAGTCGAGTCG
56964256 TACCTTACCTGATACGAACCATCTCGGGAAGAGTCGAGTCG
1 TACCTTACCTGATACGAACCATCTCGGGAAGAGTCGAGTCG
56964297 TA
1 TA
56964299 TGTAGATGGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (41 bp):
TACCTTACCTGATACGAACCATCTCGGGAAGAGTCGAGTCG
Found at i:56964432 original size:14 final size:14
Alignment explanation
Indices: 56964388--56964432 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
56964378 ACGAATGGAA
* *
56964388 GGTAGGAACGAAAG
1 GGTAGGAACAAAAT
56964402 GGTAGGAACAAAAT
1 GGTAGGAACAAAAT
* *
56964416 GGTATGAACAAATT
1 GGTAGGAACAAAAT
56964430 GGT
1 GGT
56964433 TGGTTTAGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.42, C:0.07, G:0.33, T:0.18
Consensus pattern (14 bp):
GGTAGGAACAAAAT
Found at i:56966431 original size:46 final size:46
Alignment explanation
Indices: 56966379--56966554 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
56966369 TGGTTGAGCA
56966379 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
56966425 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
56966470 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
56966518 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56966555 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:56966535 original size:93 final size:93
Alignment explanation
Indices: 56966376--56966547 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
56966366 GGATGGTTGA
* ** *
56966376 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
56966441 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
56966469 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
56966534 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
56966548 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:56981578 original size:46 final size:46
Alignment explanation
Indices: 56981528--56981703 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
56981518 TGGTTGAGCA
56981528 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
56981574 TCCGAACTCGTTGAGTTGAGTCCGAGGTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
56981619 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
56981667 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56981704 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:56984256 original size:12 final size:12
Alignment explanation
Indices: 56984222--56984271 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
56984212 TATGTTCAAA
*
56984222 TTTTCAGATTTT
1 TTTTCAGAATTT
**
56984234 TTTTTTG-ATTT
1 TTTTCAGAATTT
56984245 TTTTCAGAATTT
1 TTTTCAGAATTT
*
56984257 TTTTGA-AATTT
1 TTTTCAGAATTT
56984268 TTTT
1 TTTT
56984272 TCCATTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
11 17 0.55
12 14 0.45
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.70
Consensus pattern (12 bp):
TTTTCAGAATTT
Found at i:56984267 original size:23 final size:23
Alignment explanation
Indices: 56984222--56984271 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
56984212 TATGTTCAAA
* ***
56984222 TTTTCAGATTTTTTTTTTGATTT
1 TTTTCAGAATTTTTTTGAAATTT
56984245 TTTTCAGAATTTTTTTGAAATTT
1 TTTTCAGAATTTTTTTGAAATTT
56984268 TTTT
1 TTTT
56984272 TCCATTTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.70
Consensus pattern (23 bp):
TTTTCAGAATTTTTTTGAAATTT
Found at i:56984280 original size:12 final size:11
Alignment explanation
Indices: 56984264--56984293 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
56984254 TTTTTTTGAA
*
56984264 ATTTTTTTTCC
1 ATTTTTTTTTC
56984275 ATTTTTTTTTC
1 ATTTTTTTTTC
56984286 ATTTTTTT
1 ATTTTTTT
56984294 AAACTTACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (11 bp):
ATTTTTTTTTC
Found at i:56986732 original size:29 final size:29
Alignment explanation
Indices: 56986699--56986758 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
56986689 ATAACCAAAC
*
56986699 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
56986728 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
56986757 CT
1 CT
56986759 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:56986751 original size:15 final size:15
Alignment explanation
Indices: 56986705--56986752 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
56986695 AAACCTACAA
*
56986705 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
56986720 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
56986734 AAACTTCATATCCAT
1 AAACTTCATATCCAT
56986749 AAAC
1 AAAC
56986753 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:56988044 original size:55 final size:54
Alignment explanation
Indices: 56987936--56988190 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 54
56987926 ATTAGGGTTT
* *
56987936 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * * *
56987991 AAGGATACCATGTAAGACCTTGTCGAGACATGACATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * * *
56988046 AAAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * * *
56988099 AAGGATACCATATAAGACCATGTCAAGACATAGCAATAGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
56988148 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
56988191 GTACTCGTGT
Statistics
Matches: 163, Mismatches: 32, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 37 0.23
52 6 0.04
53 41 0.25
54 8 0.05
55 67 0.41
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:56988404 original size:16 final size:16
Alignment explanation
Indices: 56988383--56988413 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56988373 ATAAATTTGA
56988383 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
56988399 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
56988414 AGTAAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:56991117 original size:15 final size:15
Alignment explanation
Indices: 56991085--56991113 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
56991075 ATTTTCTATG
56991085 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
56991100 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
56991114 ATTTCCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:56995764 original size:43 final size:43
Alignment explanation
Indices: 56995716--56996020 Score: 511
Period size: 43 Copynumber: 7.1 Consensus size: 43
56995706 CCGACATTAC
*
56995716 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
56995759 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
56995802 GCCTGCTAGGCACAAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
56995845 GCCTGCTAGGCATGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
56995888 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
56995931 GCCTGCTAGGCATGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
56995974 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
56996017 GCCT
1 GCCT
56996021 ACACGAATAT
Statistics
Matches: 244, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 244 1.00
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:56995933 original size:129 final size:129
Alignment explanation
Indices: 56995716--56996159 Score: 673
Period size: 129 Copynumber: 3.6 Consensus size: 129
56995706 CCGACATTAC
* *
56995716 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
* * * *
56995781 AATACACATCACCGACACGAAGCCTGCTAGGCACAAAGGCCCAAATACACATCACCGGCACGAA
66 AATATACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
56995845 GCCTGCTAGGCATGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
*
56995910 AATATACATCACCGACACGAAGCCTGCTAGGCATGAAGGCCCGAATACACATCACTGGCACGAA
66 AATATACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
56995974 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAG-C--CT----AC--A----CG
1 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
* *
56996026 AATATACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGAATACACATCACTGGCACG-A
66 AATATACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
* * *
56996089 GCCTGCTAGGCACGAAGGCCCAAATGCACATCACCGGCACAAAGCCTGCTAGGCATGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
56996154 AATATA
66 AATATA
56996160 ATACCAGCAC
Statistics
Matches: 287, Mismatches: 15, Indels: 27
0.87 0.05 0.08
Matches are distributed among these distances:
115 43 0.15
116 62 0.22
118 2 0.01
120 1 0.00
122 3 0.01
124 1 0.00
126 2 0.01
128 9 0.03
129 164 0.57
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.12
Consensus pattern (129 bp):
GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
AATATACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:56996035 original size:73 final size:72
Alignment explanation
Indices: 56995951--56996092 Score: 230
Period size: 73 Copynumber: 2.0 Consensus size: 72
56995941 CATGAAGGCC
*
56995951 CGAATACACATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGA
1 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACG-
56996016 AGCCTACA
65 AGCCTACA
* ** *
56996024 CGAATATACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGAATACACATCACTGGCACGA
1 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGA
56996089 GCCT
66 GCCT
56996093 GCTAGGCACG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 5 0.08
73 59 0.92
ACGTcount: A:0.32, C:0.33, G:0.22, T:0.13
Consensus pattern (72 bp):
CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGA
GCCTACA
Found at i:56996078 original size:43 final size:43
Alignment explanation
Indices: 56996024--56996157 Score: 198
Period size: 43 Copynumber: 3.1 Consensus size: 43
56996014 GAAGCCTACA
*
56996024 CGAATATACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* *
56996067 TGAATACACATCACTGGCACG-AGCCTGCTAGGCACGAAGGCC
1 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* * * *
56996109 CAAATGCACATCACCGGCACAAAGCCTGCTAGGCATGAAGGCC
1 CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
56996152 CGAATA
1 CGAATA
56996158 TAATACCAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 37 0.47
43 42 0.53
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.13
Consensus pattern (43 bp):
CGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
Found at i:56996250 original size:38 final size:38
Alignment explanation
Indices: 56996157--56996253 Score: 104
Period size: 38 Copynumber: 2.6 Consensus size: 38
56996147 AGGCCCGAAT
* * * * *
56996157 ATAATACCAGCACTAGGCCTGTGGGATTTATCCCTGAT
1 ATAATACCAGCACGAAGCCTGTGGGATTTAACCCGGAC
* * *
56996195 ATAATACCAGTAAGAAGCTTGTGGGATTTAACCCGGAC
1 ATAATACCAGCACGAAGCCTGTGGGATTTAACCCGGAC
**
56996233 ATTTTACCAGCACGAAGCCTG
1 ATAATACCAGCACGAAGCCTG
56996254 CGAGTCTTTA
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGTGGGATTTAACCCGGAC
Found at i:56998207 original size:14 final size:14
Alignment explanation
Indices: 56998160--56998207 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
56998150 GTACGAATGG
*
56998160 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
56998174 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
56998188 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
56998202 ATTGGT
1 AATGGT
56998208 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:57001517 original size:23 final size:22
Alignment explanation
Indices: 57001465--57001517 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
57001455 TCCACGTCTT
*
57001465 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
57001487 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
57001510 TTTCTTTT
1 TTTCTTTT
57001518 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:57011225 original size:12 final size:10
Alignment explanation
Indices: 57011194--57011239 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 10
57011184 TAAATCACTC
57011194 TTTTTTTT-A
1 TTTTTTTTGA
57011203 -TTTTTTT-A
1 TTTTTTTTGA
57011211 TTTTTTTTCGAA
1 TTTTTTTT-G-A
57011223 TTTTTTTTGA
1 TTTTTTTTGA
57011233 TTTTTTT
1 TTTTTTT
57011240 AACTTGTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
8 8 0.24
9 7 0.21
10 8 0.24
11 1 0.03
12 9 0.27
ACGTcount: A:0.11, C:0.02, G:0.04, T:0.83
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:57011658 original size:14 final size:14
Alignment explanation
Indices: 57011611--57011658 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
57011601 GTACGAATGG
*
57011611 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
57011625 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
57011639 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
57011653 ATTGGT
1 AATGGT
57011659 CAGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:57014016 original size:79 final size:80
Alignment explanation
Indices: 57013894--57014102 Score: 280
Period size: 79 Copynumber: 2.6 Consensus size: 80
57013884 TCCTCGTTCA
* * * ** *
57013894 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CAC-AATGCCTTCGGGACATAACCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAAC-AAGCACGAATGCCTTCGGGACATAACCCGGA
57013957 TTTAACAACTCGCACG
65 TTTAACAACTCGCACG
* *
57013973 AATGCCTTC-GGACTTAACCCGGATTTAACAACAATCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACAAGCACGAATGCCTTCGGGACATAACCCGGAT
*
57014037 TTAATAACTCGCACG
66 TTAACAACTCGCACG
* **
57014052 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACAAGCACGAATGCCTTCGG
57014103 ATCTTAATCC
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 21 0.18
79 56 0.49
80 37 0.32
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACAAGCACGAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACG
Found at i:57014037 original size:40 final size:40
Alignment explanation
Indices: 57013894--57014155 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
57013884 TCCTCGTTCA
* * * * *
57013894 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
57013933 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ***
57013973 AATGCCTTC-GGACTTAACCCGGATTTAACAACAATCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
57014012 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
57014052 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
57014092 AATGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
57014132 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
57014156 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 72 0.37
40 117 0.59
41 8 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:57026280 original size:40 final size:40
Alignment explanation
Indices: 57026108--57026273 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
57026098 AACCCAGGTA
* *
57026108 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
57026147 CCTTCGAGACTTAGCCCGGATATAGTAACTCGGACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57026187 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57026227 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57026267 CCCTCGG
1 CCTTCGG
57026274 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 12 0.10
40 103 0.90
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57028383 original size:16 final size:16
Alignment explanation
Indices: 57028342--57028384 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
57028332 GTAGTCAAAC
*
57028342 TTTCGGCTTTTTGACA
1 TTTCGGCTTTTCGACA
* * *
57028358 TTTTGACTTTTCGGCA
1 TTTCGGCTTTTCGACA
57028374 TTTCGGCTTTT
1 TTTCGGCTTTT
57028385 GCCGATCTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:57037568 original size:40 final size:40
Alignment explanation
Indices: 57037489--57037696 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
57037479 CGGATGATAA
* * *
57037489 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
57037529 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
57037569 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
57037609 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
57037649 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTAGAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
57037689 CC-GGCTAA
1 CCGGGCTAA
57037697 ATCGCGAAGA
Statistics
Matches: 151, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 8 0.05
40 141 0.93
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:57042890 original size:29 final size:29
Alignment explanation
Indices: 57042827--57042900 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
57042817 TAATCAACCG
*
57042827 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
57042856 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
*
57042885 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
57042901 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:57044727 original size:10 final size:10
Alignment explanation
Indices: 57044712--57044772 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
57044702 TAATATAGGG
57044712 AATAATATAT
1 AATAATATAT
57044722 AATAATATAT
1 AATAATATAT
* *
57044732 GAT-ATGTAAT
1 AATAATAT-AT
57044742 AA-AATATAT
1 AATAATATAT
*
57044751 AATAAAATAT
1 AATAATATAT
57044761 AATGAA-ATAT
1 AAT-AATATAT
57044771 AA
1 AA
57044773 ATGATGTGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 7 0.17
10 33 0.79
11 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (10 bp):
AATAATATAT
Found at i:57044772 original size:29 final size:29
Alignment explanation
Indices: 57044715--57044794 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
57044705 TATAGGGAAT
* *
57044715 AATATATAATAATATATGATATGTAATAA
1 AATATATAATAAAATATGATATGAAATAA
57044744 AATATATAATAAAATAT-A-ATGAAATATA
1 AATATATAATAAAATATGATATGAAATA-A
* * *
57044772 AATGATGTGATAAAATATCATAT
1 AAT-ATATAATAAAATATGATAT
57044795 AAAGATAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
27 7 0.16
28 5 0.12
29 28 0.65
30 1 0.02
31 2 0.05
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.35
Consensus pattern (29 bp):
AATATATAATAAAATATGATATGAAATAA
Found at i:57044929 original size:19 final size:18
Alignment explanation
Indices: 57044905--57044942 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
57044895 AAGGAATAAT
*
57044905 ATATATAGTAAAATATATA
1 ATATATACTAAAAT-TATA
57044924 ATATATACTAAAATTATA
1 ATATATACTAAAATTATA
57044942 A
1 A
57044943 ATAAAATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (18 bp):
ATATATACTAAAATTATA
Found at i:57044945 original size:19 final size:18
Alignment explanation
Indices: 57044900--57044945 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
57044890 AACGCAAGGA
*
57044900 ATAATATATATAGTAAAAT
1 ATAA-ATATATACTAAAAT
57044919 ATATAATATATACTAAAATT
1 ATA-AATATATACTAAAA-T
57044939 ATAAATA
1 ATAAATA
57044946 AAATGTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
ATAAATATATACTAAAAT
Found at i:57044962 original size:21 final size:20
Alignment explanation
Indices: 57044938--57045003 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 20
57044928 ATACTAAAAT
*
57044938 TATAAATAAAATGTATAATAA
1 TATAAATAAAATGAATAAT-A
57044959 TATAAATAATATAATGAATAATA
1 TATAAAT-A-A-AATGAATAATA
57044982 TATAAATAAAA--AATAATA
1 TATAAATAAAATGAATAATA
57045000 TATA
1 TATA
57045004 CTATTTTATA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 11 0.27
20 2 0.05
21 8 0.20
22 2 0.05
23 9 0.22
24 9 0.22
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
TATAAATAAAATGAATAATA
Found at i:57044969 original size:24 final size:23
Alignment explanation
Indices: 57044942--57045003 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 23
57044932 TAAAATTATA
*
57044942 AATAAAATGTATAATAATATAAAT
1 AATAAAATGAATAAT-ATATAAAT
*
57044966 AATATAATGAATAATATATAAAT
1 AATAAAATGAATAATATATAAAT
57044989 AA-AAAAT-AAT-ATATA
1 AATAAAATGAATAATATA
57045004 CTATTTTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.14
21 3 0.09
22 4 0.11
23 10 0.29
24 13 0.37
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (23 bp):
AATAAAATGAATAATATATAAAT
Found at i:57044990 original size:18 final size:19
Alignment explanation
Indices: 57044899--57045003 Score: 58
Period size: 18 Copynumber: 5.6 Consensus size: 19
57044889 AAACGCAAGG
57044899 AATAATATAT-ATAGTAAAA
1 AATAATATATAATA-TAAAA
* *
57044918 TATATAATATATACTA-AAAT
1 -A-ATAATATATAATATAAAA
* * * *
57044938 TATAA-ATAAAATGTATAAT
1 AATAATATATAATATA-AAA
* **
57044957 AAT-ATAAATAATATAATG
1 AATAATATATAATATAAAA
57044975 AATAATATATAA-ATAAAA
1 AATAATATATAATATAAAA
57044993 AATAATATATA
1 AATAATATATA
57045004 CTATTTTATA
Statistics
Matches: 64, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
17 5 0.08
18 25 0.39
19 19 0.30
20 4 0.06
21 9 0.14
22 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (19 bp):
AATAATATATAATATAAAA
Found at i:57046602 original size:44 final size:44
Alignment explanation
Indices: 57046550--57047057 Score: 633
Period size: 44 Copynumber: 11.5 Consensus size: 44
57046540 ACTCAAGAAT
* * *
57046550 GCCAAATCTGTTATCTCCGACCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * * * * *
57046594 ACCGAATCTGCTATCTTTGATCTGCTCTTTGACAACATAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
57046638 ACCAAATCTGTTATCTTCTATCTACTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
57046682 GCCAAAT-TCACTATCTTTGATCTACTCTCTGAAAATACAGAGAC
1 GCCAAATCT-GCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
57046726 GCCAAATCTGCTATCTTCTATCTGCTCTCTAACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
57046770 GCCAAATCTGCTATTCTTCGATCTGCTCTTTGACAATACAAAGAC
1 GCCAAATCTGCTA-TCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
57046815 GCCAAATCTGTTCTCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
57046859 GCCAAATCTGCTATCTTCGATCTACTTTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
57046903 GTCAAATCTGCTATCTTCGATCTGCTCGT-TGACAATACTGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTC-TCTGACAATACAGAGAC
* * * *
57046947 ACCAAATCTGTTCTCTTCGATCTGCTCTCTGACAATATAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
57046991 GCCAAATCTGTTCTCTTCGATCTGCTCTCTGACGATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
57047035 ACCAAATCTGCTATCTTCGATCT
1 GCCAAATCTGCTATCTTCGATCT
57047058 TAAAGGATAT
Statistics
Matches: 396, Mismatches: 63, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
43 2 0.01
44 355 0.90
45 39 0.10
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
Found at i:57057077 original size:40 final size:40
Alignment explanation
Indices: 57057057--57057200 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
57057047 AGTGACGAAT
57057057 TCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATA
* * * *
57057097 ACCGGGCTATGTCCCGAAGGCATTCGTGTGAGTTACTATA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATA
* *
57057137 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATA
* * *
57057177 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGCCCCGAAGGCATT
57057201 CGAGCGAGTA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATA
Found at i:57057221 original size:80 final size:80
Alignment explanation
Indices: 57057057--57057209 Score: 270
Period size: 80 Copynumber: 1.9 Consensus size: 80
57057047 AGTGACGAAT
* *
57057057 TCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTC
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTATGTCCCGAAGGCATTC
* *
57057122 GTGTGAGTTACTATA
66 GAGCGAGTTACTATA
57057137 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTATGTCCCGAAGGCATTC
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTATGTCCCGAAGGCATTC
57057202 GAGCGAGT
66 GAGCGAGT
57057210 AGTTATATCC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTATGTCCCGAAGGCATTC
GAGCGAGTTACTATA
Found at i:57062221 original size:7 final size:7
Alignment explanation
Indices: 57062209--57062244 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
57062199 TTCTTATATC
57062209 TAATAAA
1 TAATAAA
57062216 TAATAAA
1 TAATAAA
57062223 TAATGAAA
1 TAAT-AAA
*
57062231 TAATATA
1 TAATAAA
57062238 TAATAAA
1 TAATAAA
57062245 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:57062233 original size:15 final size:14
Alignment explanation
Indices: 57062209--57062244 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
57062199 TTCTTATATC
57062209 TAATAAATAATAAA
1 TAATAAATAATAAA
*
57062223 TAATGAAATAATATA
1 TAAT-AAATAATAAA
57062238 TAATAAA
1 TAATAAA
57062245 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:57062487 original size:19 final size:19
Alignment explanation
Indices: 57062463--57062501 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
57062453 AAGGAATAAT
*
57062463 ATATATAGTAAAATATATA
1 ATATATACTAAAATATATA
*
57062482 ATATATACTAAAATTTATA
1 ATATATACTAAAATATATA
57062501 A
1 A
57062502 AAAATGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
ATATATACTAAAATATATA
Found at i:57062515 original size:14 final size:14
Alignment explanation
Indices: 57062498--57062558 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 14
57062488 ACTAAAATTT
*
57062498 ATAAAAAATGTATA
1 ATAAAAAATATATA
57062512 ATAATATAAATAATATA
1 ATAA-A-AAAT-ATATA
* *
57062529 ATGAATAATATATAA
1 ATAAAAAATATAT-A
57062544 ATAAAAAATAATATA
1 ATAAAAAAT-ATATA
57062559 TACTATTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
14 8 0.22
15 13 0.35
16 9 0.24
17 7 0.19
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
ATAAAAAATATATA
Found at i:57062526 original size:12 final size:11
Alignment explanation
Indices: 57062509--57062547 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
57062499 TAAAAAATGT
57062509 ATAATAATATAA
1 ATAAT-ATATAA
*
57062521 ATAATATAATGA
1 ATAATAT-ATAA
57062533 ATAATATATAA
1 ATAATATATAA
57062544 ATAA
1 ATAA
57062548 AAAATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATAATATATAA
Found at i:57062547 original size:18 final size:19
Alignment explanation
Indices: 57062511--57062560 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
57062501 AAAAATGTAT
**
57062511 AATAATATAAATAATATAATG
1 AATAATAT--ATAATATAAAA
57062532 AATAATATATAA-ATAAAA
1 AATAATATATAATATAAAA
57062550 AATAATATATA
1 AATAATATATA
57062561 CTATTTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 15 0.56
19 4 0.15
21 8 0.30
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (19 bp):
AATAATATATAATATAAAA
Found at i:57066997 original size:45 final size:44
Alignment explanation
Indices: 57066931--57067110 Score: 175
Period size: 45 Copynumber: 4.0 Consensus size: 44
57066921 GCCTATATGC
* *
57066931 ATAAAAATGAGTAAAACCATAGCTAAAAGATGCTATGACATCATG
1 ATAAAGATGAGTAAGACCATAGCTAAAAGATG-TATGACATCATG
* * **
57066976 ATAAAGATGAGTAAGATCATAGCTAAAAGATTTTATGGA-ATCACC
1 ATAAAGATGAGTAAGACCATAGCTAAAAGA-TGTAT-GACATCATG
* * * * *
57067021 ATAAAGATAAGTAATACCATAGCTGAAAGAAGATATGGCATCATG
1 ATAAAGATGAGTAAGACCATAGCTAAAAGATG-TATGACATCATG
* *
57067066 ATAGAA-ATGAGTAAGACCATATCTAAAAGATGTCATGATATCATG
1 ATA-AAGATGAGTAAGACCATAGCTAAAAGATGT-ATGACATCATG
57067111 TGAAAGTATG
Statistics
Matches: 107, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
44 2 0.02
45 100 0.93
46 5 0.05
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (44 bp):
ATAAAGATGAGTAAGACCATAGCTAAAAGATGTATGACATCATG
Found at i:57067006 original size:23 final size:22
Alignment explanation
Indices: 57066932--57067006 Score: 57
Period size: 22 Copynumber: 3.4 Consensus size: 22
57066922 CCTATATGCA
*
57066932 TAAAA-ATGAGTAAAACCATAGC
1 TAAAAGATGAGTAAGA-CATAGC
* * *
57066954 TAAAAGATG-CTATGACATCATGA
1 TAAAAGATGAGTAAGACAT-A-GC
57066977 T-AAAGATGAGTAAGATCATAGC
1 TAAAAGATGAGTAAGA-CATAGC
57066999 TAAAAGAT
1 TAAAAGAT
57067007 TTTATGGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
21 3 0.08
22 18 0.45
23 16 0.40
24 3 0.08
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (22 bp):
TAAAAGATGAGTAAGACATAGC
Found at i:57067050 original size:90 final size:90
Alignment explanation
Indices: 57066930--57067096 Score: 237
Period size: 90 Copynumber: 1.9 Consensus size: 90
57066920 AGCCTATATG
* * * *
57066930 CATAAAAATGAGTAAAACCATAGCTAAAAGATGCTATGACATCATGATA-AAGATGAGTAAGATC
1 CATAAAAATAAGTAAAACCATAGCTAAAAGAAGATATGACATCATGATAGAA-ATGAGTAAGACC
57066994 ATAGCTAAAAGATTTTATGGAATCAC
65 ATAGCTAAAAGATTTTATGGAATCAC
* * * *
57067020 CATAAAGATAAGTAATACCATAGCTGAAAGAAGATATGGCATCATGATAGAAATGAGTAAGACCA
1 CATAAAAATAAGTAAAACCATAGCTAAAAGAAGATATGACATCATGATAGAAATGAGTAAGACCA
*
57067085 TATCTAAAAGAT
66 TAGCTAAAAGAT
57067097 GTCATGATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
90 65 0.97
91 2 0.03
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.23
Consensus pattern (90 bp):
CATAAAAATAAGTAAAACCATAGCTAAAAGAAGATATGACATCATGATAGAAATGAGTAAGACCA
TAGCTAAAAGATTTTATGGAATCAC
Found at i:57067349 original size:27 final size:27
Alignment explanation
Indices: 57067254--57067341 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
57067244 AGATAGTTCA
* *
57067254 ATGGGATGTTAAACACATGATAGTCTG
1 ATGGGACGTTAAACACAGGATAGTCTG
* ** *
57067281 ATGGGATGTTAAACATGGGATACTCTG
1 ATGGGACGTTAAACACAGGATAGTCTG
* *
57067308 ATGGAACGTTAAACACAGGATAGTCCG
1 ATGGGACGTTAAACACAGGATAGTCTG
57067335 ATGGGAC
1 ATGGGAC
57067342 ATCAAACATG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (27 bp):
ATGGGACGTTAAACACAGGATAGTCTG
Found at i:57067355 original size:27 final size:27
Alignment explanation
Indices: 57067254--57067356 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
57067244 AGATAGTTCA
* ***
57067254 ATGGGATGTTAAACACATGATAGTCTG
1 ATGGGACGTTAAACATGGGATAGTCTG
* *
57067281 ATGGGATGTTAAACATGGGATACTCTG
1 ATGGGACGTTAAACATGGGATAGTCTG
* ** *
57067308 ATGGAACGTTAAACACAGGATAGTCCG
1 ATGGGACGTTAAACATGGGATAGTCTG
* *
57067335 ATGGGACATCAAACATGGGATA
1 ATGGGACGTTAAACATGGGATA
57067357 ATCCAACAAG
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (27 bp):
ATGGGACGTTAAACATGGGATAGTCTG
Found at i:57067401 original size:27 final size:27
Alignment explanation
Indices: 57067353--57067404 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
57067343 TCAAACATGG
*
57067353 GATAATCCAACAAGACGTTAAACACAA
1 GATAATCCAACAAGACGCTAAACACAA
* * *
57067380 GATAGTCCAACAGGATGCTAAACAC
1 GATAATCCAACAAGACGCTAAACAC
57067405 GGGTTAGTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (27 bp):
GATAATCCAACAAGACGCTAAACACAA
Found at i:57069134 original size:39 final size:39
Alignment explanation
Indices: 57069080--57069156 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
57069070 TGAGGGTATT
57069080 ACACACTTAGTTATAGTATAATCAAAATAATTTACTCAA
1 ACACACTTAGTTATAGTATAATCAAAATAATTTACTCAA
57069119 ACACACTTAGTTATAGTATAATCAAAATAATTTACTCA
1 ACACACTTAGTTATAGTATAATCAAAATAATTTACTCA
57069157 TTCACTTCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (39 bp):
ACACACTTAGTTATAGTATAATCAAAATAATTTACTCAA
Found at i:57082124 original size:40 final size:40
Alignment explanation
Indices: 57081966--57082110 Score: 290
Period size: 40 Copynumber: 3.6 Consensus size: 40
57081956 GGATTGATAC
57081966 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
57082006 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
57082046 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
57082086 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57082111 AGCTAGTAGC
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:57087705 original size:28 final size:28
Alignment explanation
Indices: 57087647--57087729 Score: 105
Period size: 28 Copynumber: 2.9 Consensus size: 28
57087637 GGGCATGATA
*
57087647 GGCCATATGAATATGATCTGGGCCTAATG
1 GGCCATATGAATGTGAT-TGGGCCTAATG
57087676 GGCCATATGAATGTGATTGGGCC-AGATG
1 GGCCATATGAATGTGATTGGGCCTA-ATG
* * *
57087704 GGCCATGTGAACGAGATTGGGCCTAA
1 GGCCATATGAATGTGATTGGGCCTAA
57087730 AGGGGCCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 30 0.62
29 17 0.35
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.24
Consensus pattern (28 bp):
GGCCATATGAATGTGATTGGGCCTAATG
Found at i:57088074 original size:27 final size:27
Alignment explanation
Indices: 57088052--57088434 Score: 327
Period size: 27 Copynumber: 14.4 Consensus size: 27
57088042 AGAAATTATT
* *
57088052 GAAATACCCTCGACTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
57088079 AAAATACCC-CTGATTTGTAAAATTATC
1 GAAATACCCTC-GATTTGTAAAATTACC
**
57088106 GAAATACCCTCGATTATG--AAATTATT
1 GAAATACCCTCGATT-TGTAAAATTACC
*
57088132 GAAATA-CCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
57088158 GAAATACCC-CTGATTTGTGAAATTACC
1 GAAATACCCTC-GATTTGTAAAATTACC
* *
57088185 GAAACACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
57088212 GAAATACCCT-AATTTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * **
57088238 AAAATACCCTCGA-TTGTGAAATTATT
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
57088264 GAAATACTCTCAATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
57088291 GAAATACCCTCGATTTATGAAATTA-T
1 GAAATACCCTCGATTTGTAAAATTACC
** * *
57088317 GAACCACCCTCGATGTATAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
57088344 AAAATACCCTCAATTTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
57088371 AAAACATCCCT-GATTTGTAAAATTATC
1 GAAATA-CCCTCGATTTGTAAAATTACC
* * * *
57088398 GAAATACCCTTG-TAGTGTAAAGTTACT
1 GAAATACCCTCGAT-TTGTAAAATTACC
57088425 GAAATACCCT
1 GAAATACCCT
57088435 TGTAGTGTAA
Statistics
Matches: 292, Mismatches: 50, Indels: 28
0.79 0.14 0.08
Matches are distributed among these distances:
24 2 0.01
25 7 0.02
26 98 0.34
27 177 0.61
28 8 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:57088175 original size:79 final size:79
Alignment explanation
Indices: 57088044--57088298 Score: 302
Period size: 79 Copynumber: 3.2 Consensus size: 79
57088034 TAATAAAGAG
* * * * *
57088044 AAATTATTGAAATACCCTCGACTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAA
1 AAATTATCGAAATA-CCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAA
*
57088109 ATACCCTCGATTATG-
65 ATACCCTCAATT-TGA
* * *
57088124 AAATTATTGAAATACCTCAATTTGTAAAATTACCGAAATACCCCTGATTTGTGAAATTACCGAAA
1 AAATTATCGAAATACCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAA
*
57088189 CACCCTCAATTTGTA
66 TACCCTCAATTTG-A
* * *
57088204 AAATTACCGAAATACC-CTAATTTGTAAAATTACTAAAATA-CCCTCGA-TTGTGAAATTATTGA
1 AAATTATCGAAATACCTC-AATTTGTAAAATTACCAAAATACCCCT-GATTTGTGAAATTATCGA
*
57088266 AATACTCTCAATTTGTA
64 AATACCCTCAATTTG-A
57088283 AAATTATCGAAATACC
1 AAATTATCGAAATACC
57088299 CTCGATTTAT
Statistics
Matches: 154, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.01
79 102 0.66
80 50 0.32
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (79 bp):
AAATTATCGAAATACCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAA
TACCCTCAATTTGA
Found at i:57088179 original size:53 final size:54
Alignment explanation
Indices: 57088052--57088407 Score: 325
Period size: 53 Copynumber: 6.7 Consensus size: 54
57088042 AGAAATTATT
* * * * *
57088052 GAAATACCCTCGACTTGTAAAATTATCAAAATACCC-CTGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AATTTGTAAAATTACC
**
57088106 GAAATACCCTCGATTATG--AAATTATTGAAATA-CCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATT-TGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACC
* *
57088158 GAAATACCC-CTGATTTGTGAAATTACCGAAACACCCTCAATTTGTAAAATTACC
1 GAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACC
* ** * * **
57088212 GAAATACCCT-AATTTGTAAAATTACTAAAATACCCTCGA-TTGTGAAATTATT
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACC
* * * * * * *
57088264 GAAATACTCTCAATTTGTAAAATTATCGAAATACCCTCGATTTATGAAATTA-T
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACC
** * * * *
57088317 GAACCACCCTCGATGTATAAAATTACCAAAATACCCTCAATTTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACC
* * *
57088371 AAAACATCCCT-GATTTGTAAAATTATCGAAATACCCT
1 GAAATA-CCCTCGATTTGTAAAATTACCGAAATACCCT
57088408 TGTAGTGTAA
Statistics
Matches: 252, Mismatches: 39, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
51 3 0.01
52 48 0.19
53 115 0.46
54 80 0.32
55 6 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACC
Found at i:57088234 original size:106 final size:106
Alignment explanation
Indices: 57088044--57088407 Score: 371
Period size: 106 Copynumber: 3.4 Consensus size: 106
57088034 TAATAAAGAG
* * * *
57088044 AAATTATTGAAATACCCTCGACTTGTAAAATTATCAAAATACCC-CTGATTTGTAAAATTATCGA
1 AAATTACTGAAATACCCT-GATTTGTAAAATTATCGAAATACCCTC-AATTTGTAAAATTA-CGA
* *
57088108 AATACCCTCGATTATG--AAATTATTGAAATA-CCTCAATTTGTA
63 AATACCCTCGATT-TGTAAAATTACTAAAATACCCTCAATTTGTA
* * * *
57088150 AAATTACCGAAATACCCCTGATTTGTGAAATTACCGAAACACCCTCAATTTGTAAAATTACCGAA
1 AAATTACTGAAATA-CCCTGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTA-CGAA
* * *
57088215 ATACCCT-AATTTGTAAAATTACTAAAATACCCTCGA-TTGTG
64 ATACCCTCGATTTGTAAAATTACTAAAATACCCTCAATTTGTA
* * * * * * * *
57088256 AAATTATTGAAATACTCTCAATTTGTAAAATTATCGAAATACCCTCGATTTATGAAATTATGAAC
1 AAATTACTGAAATACCCT-GATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACGAAA
* * * *
57088321 CACCCTCGATGTATAAAATTACCAAAATACCCTCAATTTGTA
65 TACCCTCGATTTGTAAAATTACTAAAATACCCTCAATTTGTA
* *
57088363 AAATTACTAAAACATCCCTGATTTGTAAAATTATCGAAATACCCT
1 AAATTACTGAAATA-CCCTGATTTGTAAAATTATCGAAATACCCT
57088408 TGTAGTGTAA
Statistics
Matches: 211, Mismatches: 38, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
104 2 0.01
105 14 0.07
106 142 0.67
107 50 0.24
108 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (106 bp):
AAATTACTGAAATACCCTGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACGAAAT
ACCCTCGATTTGTAAAATTACTAAAATACCCTCAATTTGTA
Found at i:57088435 original size:27 final size:27
Alignment explanation
Indices: 57088398--57088479 Score: 119
Period size: 27 Copynumber: 3.0 Consensus size: 27
57088388 TAAAATTATC
* *
57088398 GAAATACCCTTGTAGTGTAAAGTTACT
1 GAAATACCCTTGTAGTGTAAAATGACT
57088425 GAAATACCCTTGTAGTGTAAAATGACT
1 GAAATACCCTTGTAGTGTAAAATGACT
* * *
57088452 GACATACCCCTGTAGGGTAAAATGACT
1 GAAATACCCTTGTAGTGTAAAATGACT
57088479 G
1 G
57088480 TTTTGCCCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
GAAATACCCTTGTAGTGTAAAATGACT
Found at i:57091181 original size:50 final size:50
Alignment explanation
Indices: 57091062--57091355 Score: 254
Period size: 50 Copynumber: 5.8 Consensus size: 50
57091052 ATTGTGAGAA
* * *
57091062 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
57091114 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * ** * *
57091164 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGATAAT-TTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTT-AGGT
* * * ** * * *
57091215 TACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATTAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * *
57091265 CATGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
57091315 CATATGTATAGTACTAAGTGTAGGCTACTATGTGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
57091356 AAGCTTCGGT
Statistics
Matches: 197, Mismatches: 38, Indels: 16
0.78 0.15 0.06
Matches are distributed among these distances:
48 3 0.02
49 4 0.02
50 123 0.62
51 34 0.17
52 33 0.17
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:57095652 original size:34 final size:34
Alignment explanation
Indices: 57095580--57095666 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 34
57095570 CATACTGCAT
* *
57095580 TGAAATGGGCTAAGGCCCAGACTGCCTCTGCTAC
1 TGAAATGGGCTAAGGCCCAGACTGCATCTGCTAA
* * *
57095614 TGAAATGGGCTCAGGTCCAGACTG-ATACTGTTAA
1 TGAAATGGGCTAAGGCCCAGACTGCAT-CTGCTAA
*
57095648 TGAAAAGGGGCTAAGGCCC
1 TG-AAATGGGCTAAGGCCC
57095667 TAACTGGAAC
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
33 1 0.02
34 29 0.67
35 13 0.30
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.21
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCAGACTGCATCTGCTAA
Found at i:57105347 original size:21 final size:22
Alignment explanation
Indices: 57105314--57105354 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
57105304 TTCATTTATG
*
57105314 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
57105335 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
57105355 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:57108270 original size:39 final size:40
Alignment explanation
Indices: 57108066--57108288 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
57108056 TTGAATGCTG
* * * * * *
57108066 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
57108106 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
57108146 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
57108186 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
57108226 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
57108265 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57108289 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:57108308 original size:79 final size:80
Alignment explanation
Indices: 57108141--57108323 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
57108131 GTGCGAGATA
* * *
57108141 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
57108206 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
57108221 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
57108285 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
57108300 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
57108324 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:57115537 original size:80 final size:79
Alignment explanation
Indices: 57115400--57115657 Score: 225
Period size: 80 Copynumber: 3.3 Consensus size: 79
57115390 TTGAATGCTG
* * * * * * * * *
57115400 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
57115464 TGTACGAGATACTAAA
64 TGTACGAGATACTAAA
* * * * *
57115480 TCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* * **
57115545 GTGCGAGTTGTTAAA
65 GTACGAGATACTAAA
* * * *
57115560 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
* * *
57115625 AACGAGGA-GCTATA
66 TACGA-GATACTAAA
*
57115639 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
57115658 TACATGATTT
Statistics
Matches: 144, Mismatches: 31, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.10
79 45 0.31
80 81 0.56
81 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TACGAGATACTAAA
Found at i:57115610 original size:39 final size:40
Alignment explanation
Indices: 57115453--57115622 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
57115443 GGACTAAGAT
* * * * * *
57115453 CCGAAGGCCTTTGTACGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
* *
57115493 TCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
*
57115533 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
* * * * *
57115573 CCGAAGGCATT-GTGTGAGTTACTAAAACTGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
57115612 CCGAAGGCATT
1 CCGAAGGCATT
57115623 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 33 0.29
40 82 0.71
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
Found at i:57122878 original size:80 final size:79
Alignment explanation
Indices: 57122741--57122965 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
57122731 TTGAATGCTG
* * * * * *
57122741 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-AAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
57122805 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
57122821 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCAAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
57122886 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* ** * * * *
57122901 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCAAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
57122966 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 34 0.28
80 84 0.69
81 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCAAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:57122945 original size:39 final size:40
Alignment explanation
Indices: 57122741--57122963 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
57122731 TTGAATGCTG
* * * * * *
57122741 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
57122781 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
57122821 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
57122861 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
57122901 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
57122940 ACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57122964 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 34 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:57124427 original size:49 final size:49
Alignment explanation
Indices: 57124372--57124619 Score: 309
Period size: 49 Copynumber: 5.0 Consensus size: 49
57124362 CTTGTAGCCA
* *
57124372 AATTATCTGGTACCCATAGTAGCCTGCA-TCTAGTACTACACATGTGACC
1 AATTATCTGGTACACGTAGTAGCCTGCACT-TAGTACTACACATGTGACC
* * * *
57124421 AATTATCTAGTACATGTAGTAGCCTGCACTTAGTACTATACACGTGACC
1 AATTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
** * *
57124470 TAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCG
1 -AATTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CC
* * * *
57124521 AAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 AA-TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
* *
57124571 AATAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 AATTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
57124620 TCACAATAGA
Statistics
Matches: 167, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 82 0.49
50 46 0.28
51 39 0.23
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
AATTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
Found at i:57124602 original size:100 final size:99
Alignment explanation
Indices: 57124376--57124619 Score: 314
Period size: 100 Copynumber: 2.5 Consensus size: 99
57124366 TAGCCAAATT
* * **
57124376 ATCTGGTACCCATAGTAGCCTGCA-TCTAGTACTACACATGTGACCAATTATCTAGTACATGTAG
1 ATCTGGTACACGTAGTAGCCTGCACT-TAGTACTACACATGTGACCAATTATCTAGTACACATAG
* * *
57124440 TAGCCTGCACTTAGTACTATACACGTGACCTAACC
65 TAGCCTGCACTTAGTACTACACACGCGACCTAACA
* * *
57124475 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATC-AGGTACGCAT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCTA-GTACACAT
* *
57124539 AGTAGCCTGCACTTAGTACTACACATGCGACC-AATA
63 AGTAGCCTGCACTTAGTACTACACACGCGACCTAACA
*
57124575 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
57124620 TCACAATAGA
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
99 39 0.31
100 48 0.38
101 39 0.31
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTAGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGACCTAACA
Found at i:57146714 original size:27 final size:27
Alignment explanation
Indices: 57146684--57146861 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
57146674 ATATTGAGTC
* *
57146684 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
57146711 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
57146738 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
57146766 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
57146793 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
57146820 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
57146847 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
57146862 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:57146823 original size:82 final size:81
Alignment explanation
Indices: 57146705--57146860 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
57146695 TGCTATATAA
* * *
57146705 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCACA
57146770 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
57146787 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
57146851 CACTTAGTGC
65 CACTTAGTGC
57146861 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:57154766 original size:27 final size:27
Alignment explanation
Indices: 57154736--57154913 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57154726 ATATTGAGTC
* * * *
57154736 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
57154763 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57154790 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
57154818 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
57154845 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
57154872 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57154899 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57154914 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:57154875 original size:82 final size:81
Alignment explanation
Indices: 57154757--57154912 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57154747 TGCTATATAA
* *
57154757 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
57154822 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
57154839 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
57154903 CACTTAGTGC
65 CACTTAGTGC
57154913 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:57170165 original size:21 final size:20
Alignment explanation
Indices: 57170141--57170179 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
57170131 GTGTAAATGT
57170141 AGTAACATAATTGTCATTTTA
1 AGTAACATAATT-TCATTTTA
**
57170162 AGTAATTTAATTTCATTT
1 AGTAACATAATTTCATTT
57170180 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (20 bp):
AGTAACATAATTTCATTTTA
Found at i:57174911 original size:13 final size:13
Alignment explanation
Indices: 57174893--57174917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57174883 TTTATTATTC
57174893 CTAACATAAAATA
1 CTAACATAAAATA
57174906 CTAACATAAAAT
1 CTAACATAAAAT
57174918 GTTTATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (13 bp):
CTAACATAAAATA
Found at i:57181460 original size:40 final size:40
Alignment explanation
Indices: 57181389--57181645 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
57181379 AAACCAAGTA
* *
57181389 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
57181428 CCTTCAGGACTTAGCCCTGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57181468 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57181508 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
57181548 CCTTCGGG-CTTAGACC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
57181587 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
57181627 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57181646 TTATCATCAG
Statistics
Matches: 197, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 3 0.02
39 44 0.22
40 148 0.75
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57181600 original size:119 final size:120
Alignment explanation
Indices: 57181389--57181645 Score: 346
Period size: 119 Copynumber: 2.2 Consensus size: 120
57181379 AAACCAAGTA
* * * **
57181389 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCAGGACTTAGCCCTGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCAGGACTTAGACCTGAAATAG
*
57181453 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCA-CACAAATG
66 TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACT-AGCACAAATG
*
57181508 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GGGCTTAGACC-GAAATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCAGGACTTAGACCTGAAA-T
* * *
57181570 AGTCACTAGCACAAATGCCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATG
64 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATG
57181627 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57181646 TTATCATCAG
Statistics
Matches: 123, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
118 3 0.02
119 91 0.74
120 29 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCAGGACTTAGACCTGAAATAG
TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATG
Found at i:57181604 original size:79 final size:80
Alignment explanation
Indices: 57181389--57181640 Score: 309
Period size: 79 Copynumber: 3.2 Consensus size: 80
57181379 AAACCAAGTA
* * * * * * *
57181389 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCAGGACTTAGCCCTGTTATA
1 CCTTCGGGACTTAGACCGAATATAG-TAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATA
57181452 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* *
57181468 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGACCGAATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
57181533 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* *
57181548 CCTTCGGG-CTTAGACCGAA-ATTAGTCACT-AGCACAAATGCCTTCGGGGCTTAGCCCGGA-AT
1 CCTTCGGGACTTAGACCGAATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGATA-
* *
57181609 TAGTCACTAGCACAAATG
63 TAGTAACTCGCACAAATG
57181627 CCTTCGGGACTTAG
1 CCTTCGGGACTTAG
57181641 CCCGGTTATC
Statistics
Matches: 155, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
78 3 0.02
79 81 0.52
80 71 0.46
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGACCGAATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:57193787 original size:46 final size:48
Alignment explanation
Indices: 57193557--57193914 Score: 252
Period size: 46 Copynumber: 7.6 Consensus size: 48
57193547 TGTAGTGCCA
* * *
57193557 ATGCCATGTCCCAGACATGGTCTTACACTGGC--GCATCCATC-AAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGTAGCCG
* * * *
57193604 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTTGT-GCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTCGTAGCCG
* ** * *
57193654 ATGCCATGTCCTAGACATGGTCTTACACTAAC--ACCTCTATACGT-GCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATC--T-CGTAGCCG
* * *
57193702 ATGCCATGTCCTAGACATGGTCATACACTGAC--ACATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCG
57193748 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCCG
* * * *
57193794 ATG-CATGTCCCAGACAT-GTCTTACACCGGCTCT-CGTCTC-AATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGTA-GCCG
* *
57193840 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGTAGCCG
* *
57193888 ATG-CATGTCCCAAAC-TTGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
57193915 AGCACACAAA
Statistics
Matches: 260, Mismatches: 33, Indels: 37
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.04
45 17 0.07
46 75 0.29
47 58 0.22
48 62 0.24
49 1 0.00
50 33 0.13
51 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCG
Found at i:57193887 original size:94 final size:93
Alignment explanation
Indices: 57193557--57193914 Score: 269
Period size: 94 Copynumber: 3.8 Consensus size: 93
57193547 TGTAGTGCCA
* *
57193557 ATGCCATGTCCCAGACATGGTCTTACACTGGCGCATCCATCAA-GT--CGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TACAT-AATGTGCCGATGCCATGTCCCAGA
* *
57193619 CATGGTCTTACACTAGCTCTCACATATTTGTGCAG
64 CATGGTCTTACACTGGCTCTCTC-TA----TGCAG
* ** * * * *
57193654 ATGCCATGTCCTAGACATGGTCTTACACTAACACCT-C-TATACGTGCTGATGCCATGTCCTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTACATA-ATGTGCCGATGCCATGTCCCAGA
* * * *
57193717 CATGGTCATACACTGACACATCTCGTA-GCCG
64 CATGGTCTTACACTGGCTC-TCTC-TATGCAG
* *
57193748 ATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCGATG-CATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAAT-G-TGCCGATGCCATGTCCCAGA
* *
57193808 CAT-GTCTTACACCGGCTCTCGTCTCAATGCTG
64 CATGGTCTTACACTGGCTCTC-TCT--ATGCAG
*
57193840 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATG-CATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAATGT-GCCGATGCCATGTCCCAGAC
*
57193903 -TTGTCTTACACT
65 ATGGTCTTACACT
57193915 AGCACACAAA
Statistics
Matches: 210, Mismatches: 31, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
89 3 0.01
90 14 0.07
91 16 0.08
92 24 0.11
93 28 0.13
94 52 0.25
95 4 0.02
96 3 0.01
97 30 0.14
98 31 0.15
99 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAATGTGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCTCTATGCAG
Found at i:57193891 original size:48 final size:47
Alignment explanation
Indices: 57193551--57193914 Score: 249
Period size: 48 Copynumber: 7.7 Consensus size: 47
57193541 ATAGGGTGTA
* *
57193551 GTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCGCATCCATCAA-
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AAT
* *
57193600 GT--CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATA-AT
* * ** * *
57193648 GTGCAGATGCCATGTCCTAGACATGGTCTTACACTAACACCTC-TATAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-AT
* * * * * *
57193696 GTGCTGATGCCATGTCCTAGACATGGTCATACACTGACACATC-T--C
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT
*
57193741 GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CT
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT
* * *
57193786 CGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACCGGCTCTCGTCTCAA-
1 -G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--AT-AAT
*
57193835 -TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
* *
57193881 GTGGCCGATG-CATGTCCCAAAC-TTGTCTTACACT
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
57193915 AGCACACAAA
Statistics
Matches: 260, Mismatches: 32, Indels: 49
0.76 0.09 0.14
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.05
45 18 0.07
46 62 0.24
47 64 0.25
48 66 0.25
49 3 0.01
50 31 0.12
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
Found at i:57195830 original size:27 final size:27
Alignment explanation
Indices: 57195800--57195977 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57195790 ATATTGAGTC
* * * *
57195800 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
57195827 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57195854 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
57195882 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
57195909 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
57195936 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57195963 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57195978 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Done.