Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 183 of 320
Found at i:60686390 original size:27 final size:27
Alignment explanation
Indices: 60686282--60686393 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
60686272 TAAATTGTAC
*
60686282 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
60686310 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
60686338 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
60686365 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTGAT-TATAT
60686394 TTTTGGATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 23 0.29
28 50 0.64
29 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:60696453 original size:13 final size:13
Alignment explanation
Indices: 60696437--60696463 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60696427 ATTTGATTTC
60696437 TTTATTTTTTATT
1 TTTATTTTTTATT
60696450 TTTATTTTTTATT
1 TTTATTTTTTATT
60696463 T
1 T
60696464 AACACTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTTTATT
Found at i:60715119 original size:18 final size:18
Alignment explanation
Indices: 60715077--60715119 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
60715067 GCCCATTCCG
*
60715077 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
60715095 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
60715113 AAGTATG
1 AAGTATG
60715120 CCCATTCGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:60715670 original size:27 final size:28
Alignment explanation
Indices: 60715558--60715683 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
60715548 CATGAGATTG
* * * *
60715558 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
60715587 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
60715615 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
60715643 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
60715670 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
60715684 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.26
28 50 0.54
29 18 0.20
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:60715680 original size:55 final size:57
Alignment explanation
Indices: 60715558--60715683 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 57
60715548 CATGAGATTG
* *
60715558 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
* *
60715615 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
*
60715670 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
60715684 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 24 0.38
56 22 0.34
57 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:60715694 original size:27 final size:27
Alignment explanation
Indices: 60715586--60715697 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
60715576 TAAATTGTAC
*
60715586 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
60715614 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
60715642 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
60715669 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTGAT-TATAT
60715698 TTTTTGGATC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 23 0.29
28 50 0.64
29 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:60726005 original size:7 final size:7
Alignment explanation
Indices: 60725983--60726020 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
60725973 CACTAACATA
*
60725983 TTTTGAT
1 TTTTTAT
60725990 TTCTTTAT
1 TT-TTTAT
60725998 TTTTTAT
1 TTTTTAT
60726005 TTTTTAT
1 TTTTTAT
60726012 TTTTTAT
1 TTTTTAT
60726019 TT
1 TT
60726021 CTAACACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:60726015 original size:14 final size:15
Alignment explanation
Indices: 60725983--60726022 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
60725973 CACTAACATA
*
60725983 TTTTGATTTCTTTAT
1 TTTTTATTTCTTTAT
60725998 TTTTTATTT-TTTAT
1 TTTTTATTTCTTTAT
60726012 TTTTTATTTCT
1 TTTTTATTTCT
60726023 AACACTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.12, C:0.05, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTTATTTCTTTAT
Found at i:60727299 original size:174 final size:174
Alignment explanation
Indices: 60727003--60727352 Score: 558
Period size: 174 Copynumber: 2.0 Consensus size: 174
60726993 GATTTAGTTA
*
60727003 AATGTTAACACATCTTGGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
1 AATGTTAACACATCTTAGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
* * *
60727068 TCGAGAGGCAAGAATTCCATGGTCCCATCCTCAAAGAGACGTAGGGGATCGGGTTCTTCCTCTGT
66 TCGAGAGGCAAGAAGTCCATGGTCCCATCCTCAAAGAGACATAGGGGATCAGGTTCTTCCTCTGT
*
60727133 ACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTTGC
131 ACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTCGC
* *
60727177 AATGTTAACACATCTTAGACCTACTATATCAATGCTCATCCATATTCATGTACATTATGTCATCA
1 AATGTTAACACATCTTAGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
* * * *
60727242 TTGAGAGGCAAGAAGGT-CGTGGTCCTATCCTCAAAGAGATATAGGGGATCAGGTTCTTCCTCTG
66 TCGAGAGGCAAGAA-GTCCATGGTCCCATCCTCAAAGAGACATAGGGGATCAGGTTCTTCCTCTG
* * *
60727306 TACGTGCTACAGCTGAAGTTCGGCACTCATTCCTTGAGTTTTCGC
130 TACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTCGC
60727351 AA
1 AA
60727353 GCTTCATAGG
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
174 160 0.99
175 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (174 bp):
AATGTTAACACATCTTAGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
TCGAGAGGCAAGAAGTCCATGGTCCCATCCTCAAAGAGACATAGGGGATCAGGTTCTTCCTCTGT
ACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTCGC
Found at i:60730089 original size:37 final size:37
Alignment explanation
Indices: 60729945--60730090 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
60729935 GCTCAGACGA
* * *
60729945 AATCTCCACACGAAGTTATCGGGTCTTGACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTT-ACCCGGACAT
* *
60729983 AATCTCCACACATAGTCATCGGGTCTTACCCGAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
60730020 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
60730057 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60730091 ATATATTTCC
Statistics
Matches: 98, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
37 74 0.76
38 24 0.24
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:60730374 original size:47 final size:47
Alignment explanation
Indices: 60730295--60730582 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
60730285 TATATATATT
* * * *
60730295 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
60730342 CCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
60730389 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCGCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
60730436 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
60730483 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
60730530 TCACATTAGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60730577 TCACAT
1 TCACAT
60730583 AAAATCCTAA
Statistics
Matches: 213, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 213 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:60730464 original size:22 final size:22
Alignment explanation
Indices: 60730388--60730464 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
60730378 GCTCACATTC
*
60730388 ATCACATTGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
* *
60730410 ATCACATATATG-CATGTTC-GCATT
1 ATCAC--ATAGGCCA--TTCGGCCTT
60730434 CATCACATAGGCCATTCGGCCTT
1 -ATCACATAGGCCATTCGGCCTT
60730457 ATCACATA
1 ATCACATA
60730465 TATGCATGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.37
23 10 0.23
24 9 0.21
25 8 0.19
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (22 bp):
ATCACATAGGCCATTCGGCCTT
Found at i:60730467 original size:141 final size:141
Alignment explanation
Indices: 60730295--60730583 Score: 488
Period size: 141 Copynumber: 2.0 Consensus size: 141
60730285 TATATATATT
* *
60730295 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
* * *
60730360 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
* *
60730425 GTTCGCATTCA
131 ATTCACATTCA
* * *
60730436 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
60730501 CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
60730566 ATTCACATTCA
131 ATTCACATTCA
60730577 TCACATA
1 TCACATA
60730584 AAATCCTAAA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 138 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
ATTCACATTCA
Found at i:60747884 original size:24 final size:24
Alignment explanation
Indices: 60747855--60747902 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
60747845 ACTCAAAGGA
60747855 AGAAATTATTTTTATGCATTTAAG
1 AGAAATTATTTTTATGCATTTAAG
60747879 AGAAATTATTTTTATGCATTTAAG
1 AGAAATTATTTTTATGCATTTAAG
60747903 GTTCGGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (24 bp):
AGAAATTATTTTTATGCATTTAAG
Found at i:60748157 original size:29 final size:29
Alignment explanation
Indices: 60748125--60748185 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
60748115 TAAAGTGATT
* *
60748125 TTGAGTAAAAATGTATATT-AGGGATTAAA
1 TTGAG-AAAAATATAAATTGAGGGATTAAA
* *
60748154 TTGAGAAAAGTATAAATTGAGGGGTTAAA
1 TTGAGAAAAATATAAATTGAGGGATTAAA
60748183 TTG
1 TTG
60748186 TGAGATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.43, C:0.00, G:0.25, T:0.33
Consensus pattern (29 bp):
TTGAGAAAAATATAAATTGAGGGATTAAA
Found at i:60749844 original size:8 final size:8
Alignment explanation
Indices: 60749831--60749855 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
60749821 AATTTTGAGT
60749831 ATTTTGTG
1 ATTTTGTG
60749839 ATTTTGTG
1 ATTTTGTG
60749847 ATTTTGTG
1 ATTTTGTG
60749855 A
1 A
60749856 ACAAGGGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (8 bp):
ATTTTGTG
Found at i:60750371 original size:43 final size:43
Alignment explanation
Indices: 60750331--60750429 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
60750321 CTTGAGATAT
*
60750331 CATGTAAGACCATGTTTGAGACACTGACATCGATTAGAGATTA
1 CATGTAAGACCATATTTGAGACACTGACATCGATTAGAGATTA
* * * * * **
60750374 CGTGTAAGACCCTATTTGGGACAGTGGCATCGA-TATTTGATTA
1 CATGTAAGACCATATTTGAGACACTGACATCGATTA-GAGATTA
60750417 CATGTAAGACCAT
1 CATGTAAGACCAT
60750430 GTCATGGACG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
42 2 0.04
43 43 0.96
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCATATTTGAGACACTGACATCGATTAGAGATTA
Found at i:60751941 original size:18 final size:17
Alignment explanation
Indices: 60751920--60751974 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
60751910 ACAATTCTTT
60751920 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
60751938 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
60751955 TCTTCTTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
60751972 TCT
1 TCT
60751975 ATAGCCCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.28
18 19 0.59
19 3 0.09
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:60758565 original size:47 final size:47
Alignment explanation
Indices: 60758511--60758747 Score: 287
Period size: 47 Copynumber: 5.0 Consensus size: 47
60758501 GATTTTATGA
** * * *
60758511 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
60758558 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
60758605 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAGTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
60758652 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * * ** * *
60758699 GATAAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
60758746 GA
1 GA
60758748 GATATGTATG
Statistics
Matches: 168, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 165 0.98
48 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:60758582 original size:25 final size:25
Alignment explanation
Indices: 60758554--60758632 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
60758544 CTAATGGCCA
60758554 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
60758579 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
60758601 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
60758626 GTGTGAT
1 ATGTGAT
60758633 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 14 0.35
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:60760308 original size:40 final size:40
Alignment explanation
Indices: 60760255--60760601 Score: 595
Period size: 40 Copynumber: 8.7 Consensus size: 40
60760245 TTGAGAGTTA
60760255 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60760295 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTCCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60760335 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60760375 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
60760415 TATGTCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
60760455 TATGTCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60760495 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
60760535 TATATTCGGACTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60760575 TATATCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
60760602 ATCCTGCTAG
Statistics
Matches: 295, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 295 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:60760827 original size:25 final size:25
Alignment explanation
Indices: 60760777--60760827 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
60760767 TGTGTAACAA
* *
60760777 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
60760802 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
60760827 C
1 C
60760828 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:60764542 original size:47 final size:47
Alignment explanation
Indices: 60764488--60764678 Score: 283
Period size: 47 Copynumber: 4.1 Consensus size: 47
60764478 GATTTTATGA
** * * *
60764488 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
60764535 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
60764582 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAGTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
60764629 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
60764676 GAT
1 GAT
60764679 AAACGTGGAA
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:60764559 original size:25 final size:25
Alignment explanation
Indices: 60764531--60764609 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
60764521 CTAATGGCCA
60764531 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
60764556 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
60764578 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
60764603 GTGTGAT
1 ATGTGAT
60764610 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 14 0.35
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:60764711 original size:94 final size:94
Alignment explanation
Indices: 60764505--60764724 Score: 264
Period size: 94 Copynumber: 2.3 Consensus size: 94
60764495 GTGAATGTGT
* * * *
60764505 ATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAG
* *
60764570 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGATAAACGTGAACATGC
* * * * *
60764599 ATATGTGTGATAAGGCCGAATGGCCAGTGTGATGAATGTGAACATGCATATGTGTGATAAGGTAG
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAG
* * *
60764664 AATGGCTAATGTGATAAACGTGGAA-GTGT
66 AATGGCCAATGTGATAAACGT-GAACATGC
* *
60764693 ATATATGTGGCGAA-GCCGAATGGCTAATGTGA
1 ATATATGT-GAGAAGGCCGAATGGCCAATGTGA
60764725 GATATGTATG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
94 101 0.94
95 6 0.06
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (94 bp):
ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAG
AATGGCCAATGTGATAAACGTGAACATGC
Found at i:60767843 original size:46 final size:46
Alignment explanation
Indices: 60767793--60767917 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
60767783 TGAGCATCCG
* *
60767793 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCA
* * * * *
60767839 AACTCGTTGAGTTGAGTCTGAGTTCACTCATGAATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCA
* * *
60767885 AGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60767918 GCAGGTTACA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCA
Found at i:60770749 original size:15 final size:15
Alignment explanation
Indices: 60770726--60770781 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
60770716 GTATCTTGGG
60770726 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60770741 TTACTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60770756 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
60770771 TTTCTTTATTC
1 TTTCTTTATTC
60770782 GGTTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.14, C:0.16, G:0.11, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60773191 original size:46 final size:46
Alignment explanation
Indices: 60773131--60773258 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 46
60773121 GGTTGAGCAT
* * *
60773131 CCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATTGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CGC
* * *
60773177 CTGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
60773223 CCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60773259 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
46 67 0.97
47 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:60774989 original size:8 final size:8
Alignment explanation
Indices: 60774976--60775014 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
60774966 ATCAGCAAAA
60774976 GCCGAAAT
1 GCCGAAAT
*
60774984 GCCGAAAA
1 GCCGAAAT
60774992 GCCGAAAT
1 GCCGAAAT
*
60775000 GCCAAAAT
1 GCCGAAAT
60775008 GCCGAAA
1 GCCGAAA
60775015 AGCCAAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.44, C:0.26, G:0.23, T:0.08
Consensus pattern (8 bp):
GCCGAAAT
Found at i:60774993 original size:16 final size:15
Alignment explanation
Indices: 60774971--60775023 Score: 79
Period size: 16 Copynumber: 3.4 Consensus size: 15
60774961 TATGTATCAG
60774971 CAAAAGCCGAAATGC
1 CAAAAGCCGAAATGC
60774986 CGAAAAGCCGAAATGC
1 C-AAAAGCCGAAATGC
*
60775002 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAATGC
60775018 CAAAAG
1 CAAAAG
60775024 TTTGGATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 6 0.17
16 29 0.83
ACGTcount: A:0.49, C:0.25, G:0.21, T:0.06
Consensus pattern (15 bp):
CAAAAGCCGAAATGC
Found at i:60775285 original size:29 final size:28
Alignment explanation
Indices: 60775233--60775347 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
60775223 GTGAGCATGA
* *
60775233 ATATGAATGTGACTAGGCCTAATGGGCC
1 ATATAAATGTGATTAGGCCTAATGGGCC
60775261 ATATAAATGTGATTTAGGCCTAATGGGCC
1 ATATAAATGTGA-TTAGGCCTAATGGGCC
* * *
60775290 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTAGGCCTAATGGGCC
* * * * *
60775319 GTATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTAGGCCTAATGGGCC
60775347 A
1 A
60775348 GATATAAGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 26 0.35
29 48 0.65
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTAGGCCTAATGGGCC
Found at i:60777934 original size:30 final size:32
Alignment explanation
Indices: 60777872--60777936 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
60777862 TTCAATCTCA
*
60777872 ACATATACTGGGCCGAAGCCTCTTCATAATTC
1 ACATATACTGGGCCGAAACCTCTTCATAATTC
**
60777904 ACAT-TACTGGGCCGAAACCT-TTTGTAATTC
1 ACATATACTGGGCCGAAACCTCTTCATAATTC
60777934 ACA
1 ACA
60777937 ACTCATATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 11 0.37
31 15 0.50
32 4 0.13
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (32 bp):
ACATATACTGGGCCGAAACCTCTTCATAATTC
Found at i:60778202 original size:24 final size:24
Alignment explanation
Indices: 60778175--60778250 Score: 116
Period size: 24 Copynumber: 3.1 Consensus size: 24
60778165 GCCTAGCCTC
60778175 TTTTAATAACTGGGGCAAAGCCCT
1 TTTTAATAACTGGGGCAAAGCCCT
60778199 TTTTAATAACTGGGGCAAAGCCCT
1 TTTTAATAACTGGGGCAAAGCCCT
* * *
60778223 TTTTGATACACTGGAGCAAAGCTCT
1 TTTTAATA-ACTGGGGCAAAGCCCT
60778248 TTT
1 TTT
60778251 CGGTAAACTA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 31 0.65
25 17 0.35
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (24 bp):
TTTTAATAACTGGGGCAAAGCCCT
Found at i:60778348 original size:20 final size:21
Alignment explanation
Indices: 60778323--60778370 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
60778313 AAATTAATAC
*
60778323 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
60778343 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
60778364 ATCATGT
1 ATCATGT
60778371 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:60801956 original size:27 final size:27
Alignment explanation
Indices: 60801926--60802008 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 27
60801916 ATCATTATTC
*
60801926 TACCATACAGGGGTATTACGGTCGTTT
1 TACCATACAGGGGTATTACGGTCATTT
* * * * * *
60801953 TACCTTAGAGGGGCATCATGGTTATTT
1 TACCATACAGGGGTATTACGGTCATTT
* * *
60801980 TACCCTACAAGGGTACTACGGTCATTT
1 TACCATACAGGGGTATTACGGTCATTT
60802007 TA
1 TA
60802009 TACTACTAGG
Statistics
Matches: 41, Mismatches: 15, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (27 bp):
TACCATACAGGGGTATTACGGTCATTT
Found at i:60802033 original size:27 final size:27
Alignment explanation
Indices: 60802003--60802143 Score: 92
Period size: 27 Copynumber: 5.2 Consensus size: 27
60801993 TACTACGGTC
* *
60802003 ATTTTATACTACT-AGGTTATTTCGATA
1 ATTTTATA-AACTGAGGGTATTTCGATA
* *
60802030 ATTTTCTAAACTGGGGGTATTTCGATA
1 ATTTTATAAACTGAGGGTATTTCGATA
** * *
60802057 ATTTTCCAAATTG-GAGGTATTTCGGTA
1 ATTTTATAAACTGAG-GGTATTTCGATA
**
60802084 ATTTTCCAAA-TCGAGGGTATTTC-AGTA
1 ATTTTATAAACT-GAGGGTATTTCGA-TA
** * *
60802111 ATTTTCCAAACTGGGGGTATTTCGGTA
1 ATTTTATAAACTGAGGGTATTTCGATA
60802138 ATTTTA
1 ATTTTA
60802144 CAATCTAAGG
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 5 0.05
27 89 0.93
28 2 0.02
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (27 bp):
ATTTTATAAACTGAGGGTATTTCGATA
Found at i:60802078 original size:54 final size:54
Alignment explanation
Indices: 60802020--60802142 Score: 169
Period size: 54 Copynumber: 2.3 Consensus size: 54
60802010 ACTACTAGGT
* * * *
60802020 TATTTCGATAATTTTCTAAA-CTGGGGGTATTTC-GATAATTTTCCAAATTGGAGG
1 TATTTCGGTAATTTTCCAAATC-GAGGGTATTTCAG-TAATTTTCCAAACTGGAGG
*
60802074 TATTTCGGTAATTTTCCAAATCGAGGGTATTTCAGTAATTTTCCAAACTGGGGG
1 TATTTCGGTAATTTTCCAAATCGAGGGTATTTCAGTAATTTTCCAAACTGGAGG
60802128 TATTTCGGTAATTTT
1 TATTTCGGTAATTTT
60802143 ACAATCTAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 60 0.97
55 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.41
Consensus pattern (54 bp):
TATTTCGGTAATTTTCCAAATCGAGGGTATTTCAGTAATTTTCCAAACTGGAGG
Found at i:60811662 original size:30 final size:30
Alignment explanation
Indices: 60811628--60811688 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
60811618 TCCTTAACTC
60811628 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
60811658 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
60811688 A
1 A
60811689 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:60818170 original size:43 final size:43
Alignment explanation
Indices: 60818104--60818187 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
60818094 AAATTGTACA
*
60818104 ATGCCAATGTCCCAGACGTGGTCTTACATGTAACCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
* *
60818147 ATGCCACTGTCCCAGACAG-GGTCTTACTTGTAAACACATAT
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAAACACATAT
60818188 TGGAATCACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:60821141 original size:34 final size:34
Alignment explanation
Indices: 60821103--60821184 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
60821093 GTAAATAGTT
60821103 TGGGCCTAAGCCC-TTATCAGTAGA-AATATCAGTG
1 TGGGCCTAAGCCCATTA-CAGTA-ATAATATCAGTG
* * *
60821137 TGGGCCTTAGCCCATTACGGTAATAGTATCAGTG
1 TGGGCCTAAGCCCATTACAGTAATAATATCAGTG
* *
60821171 TGGGCTTTAGCCCA
1 TGGGCCTAAGCCCA
60821185 ATTTAGTACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 1 0.02
34 38 0.90
35 3 0.07
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (34 bp):
TGGGCCTAAGCCCATTACAGTAATAATATCAGTG
Found at i:60823451 original size:30 final size:30
Alignment explanation
Indices: 60823417--60823499 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
60823407 CGTTTGCAGT
60823417 AAAGGCTTCGGCCTAGTGATATG-ATAATGA
1 AAAGGCTTCGGCC-AGTGATATGAATAATGA
* * *
60823447 AAAGGCTTTGGTCCAGTGACATGAATAATGC
1 AAAGGCTTCGG-CCAGTGATATGAATAATGA
*
60823478 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTC-GGCCAGTGATATG
60823500 TTGAGATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
30 22 0.50
31 21 0.48
32 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGAATAATGA
Found at i:60823494 original size:31 final size:30
Alignment explanation
Indices: 60823417--60823494 Score: 93
Period size: 31 Copynumber: 2.6 Consensus size: 30
60823407 CGTTTGCAGT
* *
60823417 AAAGGCTTCGGCCTAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
* * *
60823447 AAAGGCTTTGGTCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
*
60823478 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
60823495 ATATGTTGAG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
30 19 0.49
31 20 0.51
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:60826465 original size:43 final size:43
Alignment explanation
Indices: 60826393--60826510 Score: 116
Period size: 43 Copynumber: 2.7 Consensus size: 43
60826383 AATGCCAACC
* * *
60826393 TCCCATACGTGGTCTT--ACATGTAATCACATATCGATACCACTA
1 TCCCAAACGTGGTCTTACACAAG-AA-CACATATCGATACCAATA
* * * *
60826436 TCCCAGACAG-GGTCTTACACAAGAACACATATTGATTCCAATG
1 TCCCAAAC-GTGGTCTTACACAAGAACACATATCGATACCAATA
*
60826479 TCCCAAACGTGGTCTTACACGAGAACACATAT
1 TCCCAAACGTGGTCTTACACAAGAACACATAT
60826511 AAAAAATCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
42 1 0.02
43 55 0.87
44 3 0.05
45 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (43 bp):
TCCCAAACGTGGTCTTACACAAGAACACATATCGATACCAATA
Found at i:60827115 original size:15 final size:15
Alignment explanation
Indices: 60827095--60827123 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60827085 CAAAAATTCC
60827095 AATACAAAACATATT
1 AATACAAAACATATT
60827110 AATACAAAACATAT
1 AATACAAAACATAT
60827124 CTTTCATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (15 bp):
AATACAAAACATATT
Found at i:60833481 original size:22 final size:24
Alignment explanation
Indices: 60833456--60833500 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
60833446 GTTTTTGGCT
*
60833456 TATGGAATG-ACATGA-ATTGGTA
1 TATGCAATGAACATGAGATTGGTA
*
60833478 TATGCTATGAACATGAGATTGGT
1 TATGCAATGAACATGAGATTGGT
60833501 TGATGCCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 6 0.32
24 6 0.32
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (24 bp):
TATGCAATGAACATGAGATTGGTA
Found at i:60833506 original size:24 final size:23
Alignment explanation
Indices: 60833465--60833512 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
60833455 TTATGGAATG
*
60833465 ACATGAATTGGTATATGCTATGA
1 ACATGAATTGGTATATGCCATGA
60833488 ACATGAGATTGGT-TGATGCCATGA
1 ACATGA-ATTGGTAT-ATGCCATGA
60833512 A
1 A
60833513 TGTTGAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (23 bp):
ACATGAATTGGTATATGCCATGA
Found at i:60843389 original size:50 final size:49
Alignment explanation
Indices: 60843216--60843453 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
60843206 TAGCCAAAGC
* * * * *
60843216 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
60843265 TATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
60843314 TATCTGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
60843364 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
60843415 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
60843454 TGCGACCTCA
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 85 0.52
50 43 0.26
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:60843405 original size:99 final size:100
Alignment explanation
Indices: 60843216--60843460 Score: 332
Period size: 99 Copynumber: 2.5 Consensus size: 100
60843206 TAGCCAAAGC
* * ** *
60843216 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
60843281 TAGCCTACACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTACACTTAGTACTACACACGTGATCACAAT
* * * * *
60843314 TATCTGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
* *
60843379 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTACACTTAGTACTACACACGTGATCACAAT
* * *
60843415 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
60843461 TCACAATAGA
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 40 0.32
99 42 0.34
100 1 0.01
101 42 0.34
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTACACTTAGTACTACACACGTGATCACAAT
Found at i:60845657 original size:44 final size:42
Alignment explanation
Indices: 60845604--60845703 Score: 130
Period size: 44 Copynumber: 2.3 Consensus size: 42
60845594 CGATATGTGT
*
60845604 TTTCGTGTAAGACCACATCTGGAACGTTGGGATCGACT-TATGA
1 TTTCGTGTAAGACCACATCTGGAACGTTGGCATC-A-TATATGA
* * *
60845647 TTTACGTGTAAGACCATATCTGGGACGTTGGCATCATATTTGA
1 TTT-CGTGTAAGACCACATCTGGAACGTTGGCATCATATATGA
60845690 TTTCGTGTAAGACC
1 TTTCGTGTAAGACC
60845704 CTGTCTGGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 12 0.24
43 11 0.22
44 28 0.55
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACATCTGGAACGTTGGCATCATATATGA
Found at i:60851022 original size:53 final size:54
Alignment explanation
Indices: 60850840--60851043 Score: 203
Period size: 53 Copynumber: 3.8 Consensus size: 54
60850830 ATTAGGGTTT
* * * * *
60850840 AAGGATGCCAAGTAAGACCATGACAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
60850894 AAGGAAATCAAGTAAAACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * * * * *
60850949 AAAGATCCCATGTAACACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
60851002 AAGGATACCACGTAAGACCATGTCAAGACATGCCAATGGTAA
1 AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAA
60851044 ATTTAAAAAG
Statistics
Matches: 118, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 41 0.35
54 36 0.31
55 41 0.35
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.19
Consensus pattern (54 bp):
AAGGATACCAAGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:60852531 original size:27 final size:27
Alignment explanation
Indices: 60852477--60852587 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
60852467 AGCTTGGCTG
* * *
60852477 CCAGAACAGATAA-TGTGACAGGGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60852503 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
60852530 CCAAAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
** *
60852557 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60852584 CCAG
1 CCAG
60852588 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:60860047 original size:55 final size:54
Alignment explanation
Indices: 60859902--60860112 Score: 203
Period size: 55 Copynumber: 3.9 Consensus size: 54
60859892 GGTATTCTTT
* ** * *
60859902 TGAAACTTACCATTGCCATGTCTCAACATGGTCTTGCATGGTATCCTTGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTA
* * *
60859956 TG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTA
* * **
60860009 TAGAAACTTATCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTA
1 T-GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTA
* * ** * *
60860064 -GAAACCTTACCAATTTCCATGCCTTGGTATGGTCTTGCATGGTATCCTT
1 TGAAA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
60860113 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 10 0.08
55 69 0.54
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTA
Found at i:60860055 original size:108 final size:110
Alignment explanation
Indices: 60859903--60860105 Score: 277
Period size: 108 Copynumber: 1.9 Consensus size: 110
60859893 GTATTCTTTT
* * * *
60859903 GAAACTTACCATTGCCATGTCTCAACATGGTCTTGCATGGTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTCAACATGGTATTACATGATATCCTTGCCTTA-GAAACCTCACC
60859966 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* ** *
60860011 GAAACTTATCAATGCCATGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTCAACATGGTATTACATGATATCCTTGCCTTAGAAACCTCACCA
* * *
60860076 ATTTCCATGCCTTGGTATGGTCTTGCATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
60860106 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCAACATGGTATTACATGATATCCTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:60864567 original size:25 final size:25
Alignment explanation
Indices: 60864518--60864567 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
60864508 CCTTATAATA
* * * *
60864518 TGAAAATGACCATTTTGCTCTTAGG
1 TGAAAATGACCATTATACCCCTAGG
60864543 TGAAAATGACCATTATACCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
60864568 GTTTAAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGG
Found at i:60864651 original size:11 final size:11
Alignment explanation
Indices: 60864615--60864670 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60864605 CATGGTATGT
60864615 ATGATATGCAC
1 ATGATATGCAC
* *
60864626 ATGACATG--T
1 ATGATATGCAC
60864635 ATGATATGCAC
1 ATGATATGCAC
*
60864646 ATGATATG--T
1 ATGATATGCAC
60864655 ATGATATGCAC
1 ATGATATGCAC
60864666 ATGAT
1 ATGAT
60864671 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60864670 original size:20 final size:20
Alignment explanation
Indices: 60864604--60864670 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60864594 ACTTTGATAA
*
60864604 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60864624 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
60864644 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60864664 ACATGAT
1 ACATGAT
60864671 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60864749 original size:25 final size:25
Alignment explanation
Indices: 60864721--60864800 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 25
60864711 AGGAAGTGTA
60864721 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
60864746 AAAGGGCTT-TGCCCTAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
60864769 AAAGAGGC-TAGGCCTCCAGTTAAATGAT
1 AAAG-GGCTTATGCC-CCAGTT--ATGAT
60864797 AAAG
1 AAAG
60864801 CAGCTATACT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
23 5 0.11
24 18 0.41
25 14 0.32
27 3 0.07
28 4 0.09
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:60865042 original size:31 final size:31
Alignment explanation
Indices: 60864985--60865045 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
60864975 CGTTTACAGT
*
60864985 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATACGAAATATGA
* **
60865016 AAAGGCTTCGGCCCAGTGTTACGAAATATG
1 AAAGGCTTCAGCCCAGTAATACGAAATATG
60865046 GAGTGTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATACGAAATATGA
Found at i:60871494 original size:27 final size:27
Alignment explanation
Indices: 60871463--60871638 Score: 95
Period size: 27 Copynumber: 6.5 Consensus size: 27
60871453 ATATTGAGCC
* * *
60871463 CGCACACTCAGTGCTATGTAATCAACT
1 CGCACACTCAGTGCCACGTAATCAAAT
*
60871490 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTCAGTGCCACGTAATCAAAT
* * * **
60871517 CGCACACT-TGTGCCACATAGTCCATCT
1 CGCACACTCAGTGCCACGTAAT-CAAAT
* * * ** *
60871544 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCCACGTAATCAAAT
* * * **
60871571 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTCAGTGCCA-CGTAATCAAAT
* * * *
60871598 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCCACGTAATCAAAT
*
60871625 CGCACACTTAGTGC
1 CGCACACTCAGTGC
60871639 TGTACAATTT
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
26 11 0.09
27 101 0.82
28 11 0.09
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCCACGTAATCAAAT
Found at i:60871549 original size:54 final size:55
Alignment explanation
Indices: 60871488--60871638 Score: 200
Period size: 54 Copynumber: 2.8 Consensus size: 55
60871478 ATGTAATCAA
* *
60871488 CTCGCACACTTAGTGCCACGTAATCAAATCGCACACTT-GTGCCA-CATAGTCCAT
1 CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCCATCATA-TCCAT
* * * *
60871542 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTG-CATCATATTCAT
1 CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCCATCATATCCAT
* *
60871596 TTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGC
60871639 TGTACAATTT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 76 0.92
55 7 0.08
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (55 bp):
CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCCATCATATCCAT
Found at i:60871601 original size:81 final size:81
Alignment explanation
Indices: 60871484--60871638 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
60871474 TGCTATGTAA
* * **
60871484 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTT-GTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
60871548 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60871565 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60871629 CACTTAGTGC
65 CACTTAGTGC
60871639 TGTACAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.03
81 51 0.80
82 11 0.17
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60879577 original size:27 final size:27
Alignment explanation
Indices: 60879546--60879722 Score: 131
Period size: 27 Copynumber: 6.5 Consensus size: 27
60879536 ATATTGAGCC
* * * *
60879546 CGCACACTCAGTGCTATGTAATCAACT
1 CGCACACTTAGTGCCACGTAATCAAAT
*
60879573 CGCACAGTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * * **
60879600 CGAACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACGTAAT-CAAAT
* * ** *
60879628 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
60879655 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CGTAATCAAAT
* * *
60879682 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
60879709 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60879723 TGTACAATTT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 99 0.80
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACGTAATCAAAT
Found at i:60879706 original size:54 final size:54
Alignment explanation
Indices: 60879571--60879722 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
60879561 ATGTAATCAA
* * * *
60879571 CTCGCACAGTTAGTGCCACGTAATCAAATCGAACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTG-CACATAGTCCAT
* * * *
60879626 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TTCAT
1 CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCA-CATAGTCCAT
* *
60879680 TTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGC
60879723 TGTACAATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 44 0.53
55 39 0.47
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (54 bp):
CTCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCACATAGTCCAT
Found at i:60884808 original size:15 final size:16
Alignment explanation
Indices: 60884781--60884842 Score: 76
Period size: 15 Copynumber: 4.0 Consensus size: 16
60884771 CAAGGAAACC
60884781 GAATAAAAGAAATCCAA
1 GAAT-AAAGAAATCCAA
*
60884798 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
60884812 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
*
60884827 GAATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
60884843 TATACGATAC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
14 2 0.05
15 34 0.85
16 3 0.08
17 1 0.03
ACGTcount: A:0.60, C:0.15, G:0.15, T:0.11
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:60887917 original size:93 final size:93
Alignment explanation
Indices: 60887758--60887928 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
60887748 GCCCATAAGC
* * *
60887758 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
60887823 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
* * *
60887851 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
60887916 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60887929 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:60887925 original size:46 final size:46
Alignment explanation
Indices: 60887750--60887925 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
60887740 TGTAACCCGC
* * * * *
60887750 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
60887796 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
60887846 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
60887889 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60887926 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:60890134 original size:27 final size:27
Alignment explanation
Indices: 60890104--60890155 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
60890094 GACCAAAATA
60890104 CCCCTAAAGGGTAAAATGACT-ATTTTG
1 CCCCTAAAGGGT-AAATGACTGATTTTG
**
60890131 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAAAGGGTAAATGACTGATTT
60890156 GTCTGTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (27 bp):
CCCCTAAAGGGTAAATGACTGATTTTG
Found at i:60894149 original size:47 final size:47
Alignment explanation
Indices: 60894080--60894225 Score: 283
Period size: 47 Copynumber: 3.1 Consensus size: 47
60894070 GTGTGTATAC
*
60894080 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
60894127 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
60894174 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
60894221 GTGAA
1 GTGAA
60894226 CGTGATGGAT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:60894232 original size:15 final size:15
Alignment explanation
Indices: 60894212--60894260 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
60894202 AATGGCCGAT
*
60894212 GTGATGAATGTGAAC
1 GTGATGAATGTGAAA
*
60894227 GTGATGGATGTGAAA
1 GTGATGAATGTGAAA
*
60894242 GTGTATAAATGTGATAA
1 GTG-ATGAATGTGA-AA
60894259 GT
1 GT
60894261 CCCGAAGGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 16 0.57
16 8 0.29
17 4 0.14
ACGTcount: A:0.35, C:0.02, G:0.33, T:0.31
Consensus pattern (15 bp):
GTGATGAATGTGAAA
Found at i:60894434 original size:37 final size:37
Alignment explanation
Indices: 60894378--60894456 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60894368 CCGAGCTCTA
* * *
60894378 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60894415 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60894452 AAGAC
1 AAGAC
60894457 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60899051 original size:47 final size:45
Alignment explanation
Indices: 60898953--60899076 Score: 169
Period size: 47 Copynumber: 2.7 Consensus size: 45
60898943 CATCTGTGTT
*
60898953 GATGCCATGTCCCAGACA-GGTCTTACACTAACACATGTCAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCAAGCC
* * ** *
60898997 GATGCCATGTCCCAAACATGGCCTTACACTGGCTTACATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTCAAGCC
60899044 GATGCCATGTCCCAGACATGGTCTTACACTAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAAC
60899077 TATCATCATC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 17 0.25
45 11 0.16
47 39 0.58
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.23
Consensus pattern (45 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCAAGCC
Found at i:60901398 original size:37 final size:34
Alignment explanation
Indices: 60901348--60901419 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
60901338 AATGTGCCGT
* *
60901348 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
60901385 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
60901419 T
1 T
60901420 CCATAGTCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:60902417 original size:31 final size:31
Alignment explanation
Indices: 60902368--60902484 Score: 157
Period size: 31 Copynumber: 3.8 Consensus size: 31
60902358 TCAAGCTCAG
*
60902368 CATAT-ACTGGGCCAAAGCCTTTACATTATC
1 CATATCACTGGGCCAAAGCCTTTACATTATT
* **
60902398 CATGTCACTGGGCTGAAGCCTTTTA-ATTATT
1 CATATCACTGGGCCAAAGCC-TTTACATTATT
* *
60902429 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
60902460 CATATCACTGGGCCAAAGCCTTTAC
1 CATATCACTGGGCCAAAGCCTTTAC
60902485 TGTAAACGGT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
30 7 0.09
31 64 0.85
32 4 0.05
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCAAAGCCTTTACATTATT
Found at i:60902741 original size:25 final size:25
Alignment explanation
Indices: 60902708--60902772 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
60902698 TTAATAATTG
*
60902708 GGGCAAAGCCCTTTTTGATAAACTA
1 GGGCAAAGCCCTTTTCGATAAACTA
* *
60902733 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGATAAACTA
*
60902758 GGGCATAGCCCTTTT
1 GGGCAAAGCCCTTTT
60902773 AGCACTTCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGATAAACTA
Found at i:60903010 original size:18 final size:18
Alignment explanation
Indices: 60902987--60903022 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
60902977 TAATTTTACC
60902987 CCACAAAGGTATCTCGGT
1 CCACAAAGGTATCTCGGT
*
60903005 CCACAAGGGTATCTCGGT
1 CCACAAAGGTATCTCGGT
60903023 AATTCTACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (18 bp):
CCACAAAGGTATCTCGGT
Found at i:60903051 original size:27 final size:27
Alignment explanation
Indices: 60903011--60903068 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
60903001 CGGTCCACAA
* *
60903011 GGGTATCTCGGTAATTCTACCCTATAG
1 GGGTATCTCAGTAATTCTACCCTACAG
*
60903038 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATCTCAGTAATTCTACCCTACAG
60903065 GGGT
1 GGGT
60903069 TGTAATAGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (27 bp):
GGGTATCTCAGTAATTCTACCCTACAG
Found at i:60905046 original size:31 final size:30
Alignment explanation
Indices: 60904930--60905048 Score: 123
Period size: 31 Copynumber: 3.8 Consensus size: 30
60904920 ACAAATGACA
* *
60904930 AGTGAAAAGTAGTAGCTTCTGCTACCTGAT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGAT
* * *
60904960 AGATAAAAAAATGGTAGCTTCGGCAACCTGATT
1 AG-T-GAAAAGTGGTAGCTTCGGCTACCTGA-T
*
60904993 AGTGAAAAGTGGTAG-TACCGGCTACCTGAT
1 AGTGAAAAGTGGTAGCT-TCGGCTACCTGAT
*
60905023 CAGTGAATAGTGGTAGCTTCGGCTAC
1 -AGTGAAAAGTGGTAGCTTCGGCTAC
60905049 AAGTGACAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
30 4 0.06
31 42 0.58
32 23 0.32
33 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (30 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGAT
Found at i:60905218 original size:49 final size:48
Alignment explanation
Indices: 60905148--60905253 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
60905138 GCATTAGTCA
* *
60905148 GATATGTGATTCGTGTAAGACCATAGCAGGGCTATGGCATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCAGGGCTATGGCATCGAGATAT
**
60905196 GATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGAGATAT
1 GATATGTGATT-CGTGTAAGACCATAGCAGGGCTATGGCATCGAGATAT
60905245 GAATATGTG
1 G-ATATGTG
60905254 TAAGACCATA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 11 0.21
49 34 0.65
50 7 0.13
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.30
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCAGGGCTATGGCATCGAGATAT
Found at i:60905257 original size:42 final size:42
Alignment explanation
Indices: 60905209--60905322 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
60905199 ATGTGATTAC
*
60905209 GTGTAAGACCATAGTTGGGCTATGGCATCGA-GATATGAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATC-ATGATATGAAGAT
* * * * *
60905251 GTGTAAGACCATAGCTGGGCTATAGAATCATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCATGATATGAAGAT
**
60905293 GTGTAAGACCATAGTTGAACTATGGCATCA
1 GTGTAAGACCATAGTTGGGCTATGGCATCA
60905323 AGAAAATGAA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.02
42 59 0.98
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCATGATATGAAGAT
Found at i:60906158 original size:27 final size:27
Alignment explanation
Indices: 60906127--60906222 Score: 158
Period size: 27 Copynumber: 3.6 Consensus size: 27
60906117 GTAAGGGGTG
60906127 TTACAGGGGTATTTCGGTAATTCTACC
1 TTACAGGGGTATTTCGGTAATTCTACC
60906154 TTACAGGGGTATTTCGGTAATTCTACC
1 TTACAGGGGTATTTCGGTAATTCTACC
* *
60906181 TTATAGGGGTATTTTGGTAATTCTACC
1 TTACAGGGGTATTTCGGTAATTCTACC
*
60906208 CTACA-GGGTATTTCG
1 TTACAGGGGTATTTCG
60906223 ATATTTTACA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
26 9 0.14
27 55 0.86
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.39
Consensus pattern (27 bp):
TTACAGGGGTATTTCGGTAATTCTACC
Found at i:60906262 original size:27 final size:27
Alignment explanation
Indices: 60906211--60906310 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
60906201 TTCTACCCTA
*
60906211 CAGG-GTATTTCGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
60906236 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * **
60906263 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGAGTATTTTGATAATTTTACAAAT
* *
60906290 CAGGGGTATTTTGGTAATTTT
1 CAGGAGTATTTTGATAATTTT
60906311 GTAAACCAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
24 1 0.02
25 2 0.03
26 9 0.14
27 51 0.80
28 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:60906323 original size:27 final size:27
Alignment explanation
Indices: 60906266--60906369 Score: 91
Period size: 27 Copynumber: 3.9 Consensus size: 27
60906256 CACAAATCAG
* ** * *
60906266 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTCGGTAATTTTGTAAACCAA
*
60906293 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTGTAAACCAA
** *
60906320 GGGTATTTCAATAATTTTGTAAATCAA
1 GGGTATTTCGGTAATTTTGTAAACCAA
* ***
60906347 AGGTAAAACGGTAATTTTGTAAA
1 GGGTATTTCGGTAATTTTGTAAA
60906370 TCGAGAGTAA
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTGTAAACCAA
Found at i:60906388 original size:81 final size:80
Alignment explanation
Indices: 60906302--60906567 Score: 284
Period size: 81 Copynumber: 3.3 Consensus size: 80
60906292 GGGGTATTTT
* ** * *
60906302 GGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATCAAAGGTAAAACGGTAATTTTGT
1 GGTAATTCTGTAAACCAAGGGTAAATCAATAATTTTGTAAATCGAGGGTAAAACGGTAATTTT-T
*
60906367 AAATCGAGAGTAAAAC
65 AAATCGAGGGTAAAAC
* * ** *
60906383 AGTAATTCTGTAAATCGAA-GGTAAAATGGA-AATTTTGTAAATCGAGGGTAAAATGGTAATTCT
1 GGTAATTCTGTAAA-CCAAGGGT-AAATCAATAATTTTGTAAATCGAGGGTAAAACGGTAATT-T
*
60906446 ATAAATCGAGGGTAAAAC
63 TTAAATCGAGGGTAAAAC
* * * * **
60906464 GGTAATTCTGTAAACCGAGGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACAATAATTCTTT
1 GGTAATTCTGTAAACCAAGGGTAAATCAATAATTTTGTAAATCGAGGGTAAAACGGTAATT-TTT
60906529 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * *
60906545 GGTAATTTTGTAAATCGAGGGTA
1 GGTAATTCTGTAAACCAAGGGTA
60906568 CTTTGGTAAT
Statistics
Matches: 154, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
80 5 0.03
81 142 0.92
82 7 0.05
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (80 bp):
GGTAATTCTGTAAACCAAGGGTAAATCAATAATTTTGTAAATCGAGGGTAAAACGGTAATTTTTA
AATCGAGGGTAAAAC
Found at i:60906578 original size:54 final size:54
Alignment explanation
Indices: 60906302--60906567 Score: 300
Period size: 54 Copynumber: 4.9 Consensus size: 54
60906292 GGGGTATTTT
* * *** * * * *
60906302 GGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATCAAAGGTAAAAC
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * *
60906356 GGTAATTTTGTAAATCGAGAGTAAAACAGTAATTCTGTAAATCGAAGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* ** *
60906410 GGAAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
60906464 GGTAATTCTGTAAACCGAGGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
** * *
60906518 AATAATTCTT-TAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
1 GGTAATT-TTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
60906568 CTTTGGTAAT
Statistics
Matches: 180, Mismatches: 31, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
54 179 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (54 bp):
GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:60906580 original size:27 final size:27
Alignment explanation
Indices: 60906331--60906567 Score: 305
Period size: 27 Copynumber: 8.8 Consensus size: 27
60906321 GGTATTTCAA
* *
60906331 TAATTTTGTAAATCAAAGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
60906358 TAATTTTGTAAATCGAGAGTAAAACAG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* * *
60906385 TAATTCTGTAAATCGAAGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
60906412 AAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* *
60906439 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* * *
60906466 TAATTCTGTAAACCGAGGGTAAAACAG
1 TAATTTTGTAAATCGAGGGTAAAACGG
* **
60906493 TAATTTTGTAAATTGAGGGTAAAACAA
1 TAATTTTGTAAATCGAGGGTAAAACGG
60906520 TAATTCTT-TAAATCGAGGGTAAAACGG
1 TAATT-TTGTAAATCGAGGGTAAAACGG
60906547 TAATTTTGTAAATCGAGGGTA
1 TAATTTTGTAAATCGAGGGTA
60906568 CTTTGGTAAT
Statistics
Matches: 182, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 178 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAACGG
Found at i:60906605 original size:81 final size:81
Alignment explanation
Indices: 60906351--60906594 Score: 218
Period size: 81 Copynumber: 3.0 Consensus size: 81
60906341 AATCAAAGGT
* * * * * * * ** *
60906351 AAAACGGTAATTTTGTAAATCGAGAGTAAAACAGTAATTCTGTAAATCGAAGGTAAAATGGAAAT
1 AAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAGTAAT
** ** *
60906416 TTTGTAAATCGAGGGT
66 TTTACAAATTAAGGGC
**
60906432 AAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAGTAAT
1 AAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAGTAAT
** * *
60906497 TTTGTAAATTGAGGGT
66 TTTACAAATTAAGGGC
* * * * *****
60906513 AAAACAATAATTCTTTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTACTTTGGTAAT
1 AAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAGTAAT
60906578 TTTACAAATTAAGGGC
66 TTTACAAATTAAGGGC
60906594 A
1 A
60906595 TTTTAGTAAT
Statistics
Matches: 137, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 137 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
AAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAGTAAT
TTTACAAATTAAGGGC
Found at i:60908293 original size:47 final size:47
Alignment explanation
Indices: 60908234--60908330 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 47
60908224 CCTAGCCTCT
*
60908234 TTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
*
60908281 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
60908328 TTT
1 TTT
60908331 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 41 0.87
48 6 0.13
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:60908332 original size:24 final size:24
Alignment explanation
Indices: 60908213--60908331 Score: 163
Period size: 24 Copynumber: 5.0 Consensus size: 24
60908203 GCTTTATCAT
*
60908213 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60908238 GTAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
60908262 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
60908285 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
60908309 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60908332 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
23 24 0.28
24 49 0.57
25 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60908402 original size:9 final size:9
Alignment explanation
Indices: 60908388--60908463 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
60908378 ATCTCGTGTG
60908388 CATATCATA
1 CATATCATA
* *
60908397 CATATCGTGTG
1 CATATC--ATA
60908408 CATATCATA
1 CATATCATA
*
60908417 CATATCATGTG
1 CATATCA--TA
60908428 CATATCATA
1 CATATCATA
*
60908437 CAT-TCATGTG
1 CATATCA--TA
60908447 CATATCATA
1 CATATCATA
60908456 CATATCAT
1 CATATCAT
60908464 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
8 3 0.06
9 27 0.52
10 4 0.08
11 18 0.35
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (9 bp):
CATATCATA
Found at i:60908404 original size:20 final size:20
Alignment explanation
Indices: 60908384--60908465 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
60908374 GAACATCTCG
*
60908384 TGTGCATATCATACATATCG
1 TGTGCATATCATACATATCA
60908404 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
60908424 TGTGCATATCATACAT-TCA
1 TGTGCATATCATACATATCA
60908443 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
60908463 TGT
1 TGT
60908466 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
19 19 0.32
20 41 0.68
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:60908431 original size:11 final size:11
Alignment explanation
Indices: 60908384--60908454 Score: 57
Period size: 9 Copynumber: 7.1 Consensus size: 11
60908374 GAACATCTCG
60908384 TGTGCATATCA
1 TGTGCATATCA
* *
60908395 --TACATATCG
1 TGTGCATATCA
60908404 TGTGCATATCA
1 TGTGCATATCA
*
60908415 --TACATATCA
1 TGTGCATATCA
60908424 TGTGCATATCA
1 TGTGCATATCA
*
60908435 --TACAT-TCA
1 TGTGCATATCA
60908443 TGTGCATATCA
1 TGTGCATATCA
60908454 T
1 T
60908455 ACATATCATG
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
8 3 0.07
9 19 0.42
10 4 0.09
11 19 0.42
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:60908458 original size:39 final size:40
Alignment explanation
Indices: 60908384--60908465 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 40
60908374 GAACATCTCG
*
60908384 TGTGCATATCATACATATCGTGTGCATATCATACATATCA
1 TGTGCATATCATACATATCATGTGCATATCATACATATCA
60908424 TGTGCATATCATACAT-TCATGTGCATATCATACATATCA
1 TGTGCATATCATACATATCATGTGCATATCATACATATCA
60908463 TGT
1 TGT
60908466 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 25 0.61
40 16 0.39
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (40 bp):
TGTGCATATCATACATATCATGTGCATATCATACATATCA
Found at i:60908530 original size:25 final size:25
Alignment explanation
Indices: 60908502--60908549 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
60908492 ATATATAAAC
* *
60908502 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
60908527 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
60908550 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:60915235 original size:23 final size:23
Alignment explanation
Indices: 60915205--60915277 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
60915195 TGAAGCCCTT
60915205 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60915228 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
60915251 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
60915275 TTT
1 TTT
60915278 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:60915240 original size:47 final size:46
Alignment explanation
Indices: 60915181--60915277 Score: 142
Period size: 47 Copynumber: 2.1 Consensus size: 46
60915171 CCTAGCCTCT
*
60915181 TTTAGTAACTGGGG-TGAAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGAT-AAGCCC-TTTTAATAACTGGGGCATAAGCCC
*
60915228 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGG-ATAAGCCCTTTTAATAACTGGGGCATAAGCCC
60915275 TTT
1 TTT
60915278 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 39 0.85
48 6 0.13
49 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
TTTAATAACTGGGGATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:60915279 original size:24 final size:24
Alignment explanation
Indices: 60915160--60915278 Score: 147
Period size: 24 Copynumber: 5.0 Consensus size: 24
60915150 AATTTATCAT
*
60915160 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60915185 GTAACTGGGG--TGAAGCCCTTTTTA
1 ATAACTGGGGCAT-AAGCCC-TTTTA
60915209 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
60915232 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
60915256 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60915279 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
22 1 0.01
23 24 0.28
24 46 0.54
25 13 0.15
26 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60915349 original size:9 final size:9
Alignment explanation
Indices: 60915335--60915391 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
60915325 ATCTCGTGTG
60915335 CATATCATA
1 CATATCATA
*
60915344 CATATCATGTG
1 CATATCA--TA
60915355 CATATCATA
1 CATATCATA
* *
60915364 CATGTCATGTG
1 CATATCA--TA
60915375 CATATCATA
1 CATATCATA
60915384 CATATCAT
1 CATATCAT
60915392 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:60915354 original size:20 final size:20
Alignment explanation
Indices: 60915331--60915393 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
60915321 GAACATCTCG
60915331 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
60915351 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
60915371 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
60915391 TGT
1 TGT
60915394 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:60917924 original size:764 final size:765
Alignment explanation
Indices: 60916415--60917945 Score: 2920
Period size: 764 Copynumber: 2.0 Consensus size: 765
60916405 GGTTGCTGGT
60916415 CACAAAGAATCGGCACCCACCTATCTTCACTAATTTCGGCTTTTTTTGCGGTATTTCGGCAGAAG
1 CACAAAGAATCGGCACCCACCTATCTTCACTAATTTCGGCTTTTTTTGCGGTATTTCGGCAGAAG
60916480 TAGAGATTAAAGAAAGAAATAATAAATGAGTAGAGGAAAGTAATAGGCTGGATATTGAAAAAGAA
66 TAGAGATTAAAGAAAGAAATAATAAATGAGTAGAGGAAAGTAATAGGCTGGATATTGAAAAAGAA
**
60916545 AAGGGAGAAAAGATGAGAGGAAGGATGGTAGATTTTGCTAGGGAAGAAAAAAAAGAAGAGAAAAC
131 AAGGGAGAAAAGATGAGAGGAAGGATGGTAGATTCGGCTAGGGAAGAAAAAAAAGAAGAGAAAAC
*
60916610 TAAAACAAAGGAGAAAACGGCACAGCTAGGACCCTAATGCCGAAATTACTAACCTAATACCCTTC
196 TAAAACAAAGGAGAAAACGACACAGCTAGGACCCTAATGCCGAAATTACTAACCTAATACCCTTC
* *
60916675 TGCCGAATTCCCCTCTCTAACCCCTTCCAAACGGCTAAGCTCTATCCTTCTCTCAAATCCCTAAA
261 GGCCGAATTCCCCTCTCTAACCCCTTCCAAACAGCTAAGCTCTATCCTTCTCTCAAATCCCTAAA
* *
60916740 ATCTCTCCCCTTATCCCTCCTTAATCCATGTGTTTGACTTGATCCAACTCTCCTCTTACAGAATC
326 ACCTCTCCCCTTATCCCTCCTTAATCCATGCGTTTGACTTGATCCAACTCTCCTCTTACAGAATC
60916805 CACTTAGGTTCCAACACTTACCCTTCCTGCACATAAAAATAAATACTCTTATTTGCCAACACAGG
391 CACTTAGGTTCCAACACTTACCCTTCCTGCACATAAAAATAAATACTCTTATTTGCCAACACAGG
60916870 GAATCGATCCCAGGTCTTCCCTTATGCTCCACACGCCACCTTTTTAGGAGCTTAGTGGCGTCACC
456 GAATCGATCCCAGGTCTTCCCTTATGCTCCACACGCCACCTTTTTAGGAGCTTAGTGGCGTCACC
60916935 CTTGCCACTTTACTACAGCTCTTTTTGTGATACACTTTACCCACAACTTAATATAAGGGCACCTA
521 CTTGCCACTTTACTACAGCTCTTTTTGTGATACACTTTACCCACAACTTAATATAAGGGCACCTA
60917000 GCCAGAACCCCTAACACCTAAGTCTAAAATTTAAAAATTCAACCGGGTTTTGGCTAACTCATAAG
586 GCCAGAACCCCTAACACCTAAGTCTAAAATTTAAAAATTCAACCGGGTTTTGGCTAACTCATAAG
60917065 CCTTCCATAAGCCCATTTACACACCCAAATAATGAATTCCATAATCACATACCAAATTTTAGAAA
651 CCTTCCATAAGCCCATTTACACACCCAAATAATGAATTCCATAATCACATACCAAATTTTAGAAA
**
60917130 AATTACTTAAAATATCAGGAATCGCGAAAAACCAGAAAATCAGGATGTTA
716 AATTACTTAAAATATCAGGAATAACGAAAAACCAGAAAATCAGGATGTTA
*
60917180 CACAAAGAATCGGCACCCACCTATCTTCACTGATTTCGGC-TTTTTTGCGGTATTTCGGCAGAAG
1 CACAAAGAATCGGCACCCACCTATCTTCACTAATTTCGGCTTTTTTTGCGGTATTTCGGCAGAAG
60917244 TAGAGATTAAAGAAAGAAATAATAAATGAGTAGAGGAAAGTAATAGGCTGGATATTGAAAAAGAA
66 TAGAGATTAAAGAAAGAAATAATAAATGAGTAGAGGAAAGTAATAGGCTGGATATTGAAAAAGAA
*
60917309 AAGGGAGAAAATATGAGAGGAAGGATGGTAGATTCGGCTAGGGAAGAAAAAAAAGAAGAGAAAAC
131 AAGGGAGAAAAGATGAGAGGAAGGATGGTAGATTCGGCTAGGGAAGAAAAAAAAGAAGAGAAAAC
60917374 TAAAACAAAGGAGAAAACGACACAGCTAGGACCCTAATGCCGAAATTACTAACCTAATACCCTTC
196 TAAAACAAAGGAGAAAACGACACAGCTAGGACCCTAATGCCGAAATTACTAACCTAATACCCTTC
60917439 GGCCGAATTCCCCTCTCTAACCCCTTCCAAACAGCTAAGCTCTATCCTTCTCTCAAATCCCTAAA
261 GGCCGAATTCCCCTCTCTAACCCCTTCCAAACAGCTAAGCTCTATCCTTCTCTCAAATCCCTAAA
60917504 ACCTCTCCCCTTATCCCTCCTTAATCCATGCGTTTGACTTGATCCAACTCTCCTCTTACAGAATC
326 ACCTCTCCCCTTATCCCTCCTTAATCCATGCGTTTGACTTGATCCAACTCTCCTCTTACAGAATC
*
60917569 TACTTAGGTTCCAACACTTACCCTTCCTGCACATAAAAATAAATACTCTTATTTGCCAACACAGG
391 CACTTAGGTTCCAACACTTACCCTTCCTGCACATAAAAATAAATACTCTTATTTGCCAACACAGG
60917634 GAATCGATCCCAGGTCTTCCCTTATGCTCCACACGCCACCTTTTTAGGAGCTTAGTGGCGTCACC
456 GAATCGATCCCAGGTCTTCCCTTATGCTCCACACGCCACCTTTTTAGGAGCTTAGTGGCGTCACC
*
60917699 CTTGCCGCTTTACTACAGCTCTTTTTGTGATACACTTTACCCACAACTTAATATAAGGGCACCTA
521 CTTGCCACTTTACTACAGCTCTTTTTGTGATACACTTTACCCACAACTTAATATAAGGGCACCTA
60917764 GCCAGAACCCCTAACACCTAAGTCTAAAATTTAAAAATTCAACCGGGTTTTGGCTAACTCATAAG
586 GCCAGAACCCCTAACACCTAAGTCTAAAATTTAAAAATTCAACCGGGTTTTGGCTAACTCATAAG
*
60917829 CCTTCCATAAGCCCATTTACACACCCAAATTATGAATTCCATAATCACATACCAAATTTTAGAAA
651 CCTTCCATAAGCCCATTTACACACCCAAATAATGAATTCCATAATCACATACCAAATTTTAGAAA
*
60917894 AATTACTTAAAATATCAGGAATAACGAAAAACCCGAAAATCAGGATGTTA
716 AATTACTTAAAATATCAGGAATAACGAAAAACCAGAAAATCAGGATGTTA
60917944 CA
1 CA
60917946 TGCCAGCGTC
Statistics
Matches: 751, Mismatches: 15, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
764 712 0.95
765 39 0.05
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.25
Consensus pattern (765 bp):
CACAAAGAATCGGCACCCACCTATCTTCACTAATTTCGGCTTTTTTTGCGGTATTTCGGCAGAAG
TAGAGATTAAAGAAAGAAATAATAAATGAGTAGAGGAAAGTAATAGGCTGGATATTGAAAAAGAA
AAGGGAGAAAAGATGAGAGGAAGGATGGTAGATTCGGCTAGGGAAGAAAAAAAAGAAGAGAAAAC
TAAAACAAAGGAGAAAACGACACAGCTAGGACCCTAATGCCGAAATTACTAACCTAATACCCTTC
GGCCGAATTCCCCTCTCTAACCCCTTCCAAACAGCTAAGCTCTATCCTTCTCTCAAATCCCTAAA
ACCTCTCCCCTTATCCCTCCTTAATCCATGCGTTTGACTTGATCCAACTCTCCTCTTACAGAATC
CACTTAGGTTCCAACACTTACCCTTCCTGCACATAAAAATAAATACTCTTATTTGCCAACACAGG
GAATCGATCCCAGGTCTTCCCTTATGCTCCACACGCCACCTTTTTAGGAGCTTAGTGGCGTCACC
CTTGCCACTTTACTACAGCTCTTTTTGTGATACACTTTACCCACAACTTAATATAAGGGCACCTA
GCCAGAACCCCTAACACCTAAGTCTAAAATTTAAAAATTCAACCGGGTTTTGGCTAACTCATAAG
CCTTCCATAAGCCCATTTACACACCCAAATAATGAATTCCATAATCACATACCAAATTTTAGAAA
AATTACTTAAAATATCAGGAATAACGAAAAACCAGAAAATCAGGATGTTA
Found at i:60919531 original size:31 final size:31
Alignment explanation
Indices: 60919488--60919604 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
60919478 TCAAGCTCAG
* *
60919488 CATAT-ACTGGGCCAAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
60919518 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
60919549 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
60919580 CATATCACTAGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
60919605 TGTAAACGGT
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 4 0.05
31 75 0.95
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:60919843 original size:24 final size:25
Alignment explanation
Indices: 60919816--60919867 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
60919806 GCCTAGCCTC
60919816 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
* *
60919840 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
60919865 TTT
1 TTT
60919868 CGGCAAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:60919851 original size:25 final size:25
Alignment explanation
Indices: 60919823--60919892 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
60919813 CTCTTTTAAT
* * *
60919823 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGACA
*
60919848 AACTGGGGCAAAGCCCTTTTCGGCA
1 AACTGGGGCAAAGCCCTTTTCGACA
*
60919873 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60919893 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGACA
Found at i:60920133 original size:27 final size:27
Alignment explanation
Indices: 60920099--60920224 Score: 148
Period size: 27 Copynumber: 4.7 Consensus size: 27
60920089 CAAAATGGTA
* * *
60920099 AATT-TACCCCACAAGGGTATCTCGAT
1 AATTCTACCCTACAGGGGTATTTCGAT
* * *
60920125 AATTCTACCCTATAGGGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGAT
60920152 AATTCTACCCTACAGGGGTATTTC-AGT
1 AATTCTACCCTACAGGGGTATTTCGA-T
* * *
60920179 AATTCTACCTTACAGGGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGAT
60920206 AATTCTACCCTACAGGGGT
1 AATTCTACCCTACAGGGGT
60920225 TGTAACAGCC
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.05
27 80 0.95
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCGAT
Found at i:60920152 original size:54 final size:54
Alignment explanation
Indices: 60920094--60920224 Score: 185
Period size: 54 Copynumber: 2.4 Consensus size: 54
60920084 AGGGGCAAAA
* * *
60920094 TGGTAAATT-TACCCCACAAGGGTATCTC-GATAATTCTACCCTATAGGGGTATTT
1 TGGT-AATTCTACCCTACAGGGGTATCTCAG-TAATTCTACCCTACAGGGGTATTT
* *
60920148 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
60920202 TGGTAATTCTACCCTACAGGGGT
1 TGGTAATTCTACCCTACAGGGGT
60920225 TGTAACAGCC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
53 4 0.06
54 65 0.93
55 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:60923000 original size:27 final size:27
Alignment explanation
Indices: 60922969--60923040 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
60922959 TAAGGGGTGT
*
60922969 TACAGGGGTATTTCGGTAATTCTACCC
1 TACAGGGGTATTTCGATAATTCTACCC
60922996 TACAGGGGTATTTCGATAATTCTACCC
1 TACAGGGGTATTTCGATAATTCTACCC
*
60923023 TACAGGGGTATTTTGATA
1 TACAGGGGTATTTCGATA
60923041 TTTTACAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (27 bp):
TACAGGGGTATTTCGATAATTCTACCC
Found at i:60923078 original size:27 final size:27
Alignment explanation
Indices: 60923025--60923125 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
60923015 TTCTACCCTA
*
60923025 CAGGGGTATTTTGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
60923051 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * **
60923078 CAGGGGTATTTTGTTAATTTTACAAGC
1 CAGGAGTATTTTGATAATTTTACAAAT
* *
60923105 CAGGGGTATTTTGGTAATTTT
1 CAGGAGTATTTTGATAATTTT
60923126 GTAAACCAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
25 1 0.02
26 12 0.19
27 50 0.78
28 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:60923138 original size:27 final size:27
Alignment explanation
Indices: 60923081--60923184 Score: 91
Period size: 27 Copynumber: 3.9 Consensus size: 27
60923071 CACAAATCAG
* ** * *
60923081 GGGTATTTTGTTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTGTAAACCAA
60923108 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGTAAACCAA
** * *
60923135 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
*** *
60923162 GGGTAAAATGATAATTTTGTAAA
1 GGGTATTTTGGTAATTTTGTAAA
60923185 TCGAGAGTAA
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAACCAA
Found at i:60923447 original size:27 final size:27
Alignment explanation
Indices: 60923145--60923436 Score: 368
Period size: 27 Copynumber: 10.8 Consensus size: 27
60923135 GGGTATTTCA
* *
60923145 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * **
60923172 ATAATTTTGTAAATCGAGAGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
60923199 GTAATTCTGTAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
60923226 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
60923253 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
60923280 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
60923307 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
60923334 GTAATTCTATAAATTGAGGGTAAAGCG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
60923361 GTAATTCTATAAATTGAGGGTAAAGCG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
60923388 GTAATTCTGTAAATCGAAGGCAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
60923415 GTAATTCTATAAATCGATGGTA
1 GTAATTCTATAAATCGAGGGTA
60923437 CTTTGGTAAT
Statistics
Matches: 238, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 238 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:60927647 original size:50 final size:50
Alignment explanation
Indices: 60927533--60927650 Score: 211
Period size: 50 Copynumber: 2.4 Consensus size: 50
60927523 TATCCCGGAT
*
60927533 ATGGTCTTTCAT-GGATTCACACATATCGATGCCAATGTCATGTCCCAAAC
1 ATGGTCTTACATGGGA-TCACACATATCGATGCCAATGTCATGTCCCAAAC
60927583 ATGGTCTTACATGGGATCACACATATCGATGCCAATGTCATGTCCCAAAC
1 ATGGTCTTACATGGGATCACACATATCGATGCCAATGTCATGTCCCAAAC
60927633 ATGGTCTTACATGGGATC
1 ATGGTCTTACATGGGATC
60927651 TCATATTGAA
Statistics
Matches: 66, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
50 63 0.95
51 3 0.05
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (50 bp):
ATGGTCTTACATGGGATCACACATATCGATGCCAATGTCATGTCCCAAAC
Found at i:60928417 original size:32 final size:32
Alignment explanation
Indices: 60928370--60928436 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
60928360 TCATATGTGT
* *
60928370 TTGATATTGAAATGGGCTAGGCCCAACTGATA
1 TTGATATTGAAATGGGCAAGGCCCAACTGAGA
* * *
60928402 TTGATTTTGAGATGGGCAAGGCCCAATTGAGA
1 TTGATATTGAAATGGGCAAGGCCCAACTGAGA
60928434 TTG
1 TTG
60928437 TGATGGGTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (32 bp):
TTGATATTGAAATGGGCAAGGCCCAACTGAGA
Found at i:60929307 original size:16 final size:16
Alignment explanation
Indices: 60929286--60929319 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
60929276 TATTATGCAA
*
60929286 TAGGAAACATTGTGAT
1 TAGGAAACACTGTGAT
60929302 TAGGAAACACTGTGAT
1 TAGGAAACACTGTGAT
60929318 TA
1 TA
60929320 CTTTAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (16 bp):
TAGGAAACACTGTGAT
Found at i:60933171 original size:32 final size:32
Alignment explanation
Indices: 60933120--60933208 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
60933110 TATATGGGTT
*
60933120 TGATATTGAAATGGGCTAGGCCCAACTGATAC
1 TGATTTTGAAATGGGCTAGGCCCAACTGATAC
* * * *
60933152 TGGTTTTGATATGGGCTAGGCCCAATTGATAT
1 TGATTTTGAAATGGGCTAGGCCCAACTGATAC
** *
60933184 TGATTCAGAGATGGGCTAGGCCCAA
1 TGATTTTGAAATGGGCTAGGCCCAA
60933209 TTGAGGCTGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (32 bp):
TGATTTTGAAATGGGCTAGGCCCAACTGATAC
Found at i:60933209 original size:32 final size:32
Alignment explanation
Indices: 60933130--60933212 Score: 112
Period size: 32 Copynumber: 2.6 Consensus size: 32
60933120 TGATATTGAA
* * ** *
60933130 ATGGGCTAGGCCCAACTGATACTGGTTTTGAT
1 ATGGGCTAGGCCCAATTGATACTGATTCAGAG
*
60933162 ATGGGCTAGGCCCAATTGATATTGATTCAGAG
1 ATGGGCTAGGCCCAATTGATACTGATTCAGAG
60933194 ATGGGCTAGGCCCAATTGA
1 ATGGGCTAGGCCCAATTGA
60933213 GGCTGTGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (32 bp):
ATGGGCTAGGCCCAATTGATACTGATTCAGAG
Found at i:60934960 original size:20 final size:18
Alignment explanation
Indices: 60934923--60934973 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
60934913 CTATAGCAAC
60934923 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
60934940 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
60934960 TTACAACTTTACAA
1 TCACAA-TTTACAA
60934974 AATAACCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:60939715 original size:49 final size:48
Alignment explanation
Indices: 60939469--60939735 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 48
60939459 TTATTTGTGT
* * * * *
60939469 GCTACTGTAAGA-CATGTCTGTGACAT-GCATCAGCCAC-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TATGATA
* * * * * * *
60939515 GCAAGTGTAAGACCATGTCTGGGACATGGCATAGGCATTGAAACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGATA
*
60939563 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCTGCCTCG-TGATG-TAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-ATGAT-A
* *
60939609 GCTAGTGTAAGA-CATGTCTGAGACAT-GCATCGG-CTACGAGATG-T-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATATGATA
*
60939653 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTGAATA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATG-ATA
*
60939702 G-TCAGTGTAAGACCATGTCTGTGACATGGCATCG
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
60939736 ACATTCTACT
Statistics
Matches: 182, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 10 0.05
45 15 0.08
46 70 0.38
47 29 0.16
48 23 0.13
49 34 0.19
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGATA
Found at i:60939728 original size:140 final size:141
Alignment explanation
Indices: 60939469--60939734 Score: 326
Period size: 140 Copynumber: 1.9 Consensus size: 141
60939459 TTATTTGTGT
* *
60939469 GCTACTGTAAGACATGTCTGTGACATGCATCAGCCACATTATGAGAGCAAGTGTAAGACCATGTC
1 GCTACTGTAAGACATGTCTGAGACATGCATCAGCCACATGATGAGAGCAAGTGTAAGACCATGTC
*
60939534 TGGGACATGGCATAGGCATTGAAACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCTGCC
66 TGGGACATGGCATAGGCATCGAAACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCTGCC
60939598 TCGTGATGTAA
131 TCGTGATGTAA
* * * * *
60939609 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCTACGA-GATGTG-TC-AGTGTAAGACCATGT
1 GCTACTGTAAGACATGTCTGAGACATGCATCAGCCAC-ATGATGAGAGCAAGTGTAAGACCATGT
* * *** * *
60939671 CTGGGACATGGCATCGGCCTCGATTTGAATAG-TCAGTGTAAGACCATGTCTGTGACATGGCATC
65 CTGGGACATGGCATAGGCATCGAAACG-AGAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATC
60939735 GACATTCTAC
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
138 37 0.35
139 13 0.12
140 50 0.47
141 6 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (141 bp):
GCTACTGTAAGACATGTCTGAGACATGCATCAGCCACATGATGAGAGCAAGTGTAAGACCATGTC
TGGGACATGGCATAGGCATCGAAACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCTGCC
TCGTGATGTAA
Found at i:60944096 original size:38 final size:38
Alignment explanation
Indices: 60944051--60944176 Score: 162
Period size: 38 Copynumber: 3.3 Consensus size: 38
60944041 TGATGTGTAT
**
60944051 CTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCGTG
1 CTGGTAATATATCAAGGTTAAATCCTGCAGGCTTCGTG
*
60944089 CTGGTAATATATCAAGGTTAAATCCCGCAGGCTTCGTG
1 CTGGTAATATATCAAGGTTAAATCCTGCAGGCTTCGTG
* * * * * *
60944127 CTGGTATTATATCTAGGTTAAATCCTGTAGGCCTAGTA
1 CTGGTAATATATCAAGGTTAAATCCTGCAGGCTTCGTG
*
60944165 CTGGTATTATAT
1 CTGGTAATATAT
60944177 TTAGGCCTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (38 bp):
CTGGTAATATATCAAGGTTAAATCCTGCAGGCTTCGTG
Found at i:60948597 original size:40 final size:39
Alignment explanation
Indices: 60948499--60948681 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
60948489 TCCTCGTTCA
* * *
60948499 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
60948538 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
60948577 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * * *
60948617 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
60948658 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60948682 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 38 0.31
40 76 0.62
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:60948690 original size:41 final size:41
Alignment explanation
Indices: 60948613--60948690 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
60948603 TTAGTATCTC
* * *
60948613 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
60948654 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
60948691 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:60957054 original size:80 final size:80
Alignment explanation
Indices: 60956949--60957134 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
60956939 AGTAACTCAT
* * *
60956949 ACAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 ACAAAGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
60957012 GGA-ATTAGT-A-TCTCGC
64 GGATA-TAGTCACT-TAGC
**
60957028 ACAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCG
60957093 GATATAGTCACTTAGC
65 GATATAGTCACTTAGC
*
60957109 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
60957135 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Done.