Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 191 of 320
Found at i:63338570 original size:40 final size:40
Alignment explanation
Indices: 63338476--63338620 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
63338466 TACTCGAATG
*
63338476 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63338517 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63338557 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
63338597 ATATCCGAGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63338621 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63340285 original size:42 final size:42
Alignment explanation
Indices: 63340227--63340314 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
63340217 TCTCGATATA
* * *
63340227 ATATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
*
63340269 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
63340311 ATAT
1 ATAT
63340315 CCGGACTTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
Found at i:63345374 original size:46 final size:47
Alignment explanation
Indices: 63345271--63345437 Score: 161
Period size: 46 Copynumber: 3.6 Consensus size: 47
63345261 GTACCAATGC
63345271 CATGTCCCAGACATGGTCTTACACT-GAC--ACAT-TTCATGG-CTGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTTCA-GGTCTGATG
63345316 CATGTCCCAGACATGTCTTACACTAGCTTACATCTTCAGGTC-GATG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTTCAGGTCTGATG
* * ** * * *
63345362 CATGTCCTAGACATGTCTTATACTAGCGCAC-GCCTCA-ATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTTCAGGT-CTGATG
63345408 CCATGTCCCAGACATGGTCTTACACTAGCT
1 -CATGTCCCAGACAT-GTCTTACACTAGCT
63345438 CTCATAATGT
Statistics
Matches: 103, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
44 12 0.12
45 20 0.19
46 41 0.40
47 18 0.17
48 12 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTTCAGGTCTGATG
Found at i:63345457 original size:94 final size:92
Alignment explanation
Indices: 63345309--63345482 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 92
63345299 ACATTTCATG
** * *
63345309 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTCAGGTCGATGCATGTCCTAGAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATAATCAGGGCAATGCATGTCCTAGAC
*
63345374 ATGTCTTATACTAGCGCACGCCTCAAT
66 ATGTCTTACACTAGCGCACGCCTCAAT
**
63345401 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATGTGGGCAATGCATGTCCTA
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACATAATCAGGGCAATGCATGTCCTA
*
63345465 GACATTTCTTACACTAGC
63 GACATGTCTTACACTAGC
63345483 TCATACAAGT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
92 7 0.10
93 14 0.20
94 49 0.69
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATAATCAGGGCAATGCATGTCCTAGAC
ATGTCTTACACTAGCGCACGCCTCAAT
Found at i:63351574 original size:15 final size:16
Alignment explanation
Indices: 63351543--63351575 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63351533 AACCAAAATA
*
63351543 AAAAAATAATAATAAT
1 AAAAAATAATAACAAT
63351559 AAAAAATAA-AACAAT
1 AAAAAATAATAACAAT
63351574 AA
1 AA
63351576 TTAAGTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAATAATAACAAT
Found at i:63354752 original size:132 final size:129
Alignment explanation
Indices: 63354338--63354756 Score: 437
Period size: 131 Copynumber: 3.2 Consensus size: 129
63354328 GGCAACTCGC
* * * * * *
63354338 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAATGTCCCTTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCTTTA
** * * ** * * *
63354403 GAATTTCATTCATGTTTTCTAAAGACTCTTTAAAACGAAGGTAATACTCAATGTTTGGCAATTTG
66 GAATTTCACCCATG-TTTCTAAAGATTC-TAAAAAATAAGGTAATGCTCGATGATTGGCAATTTG
63354468 G
129 G
* * * *
63354469 GAGTCGTGCCCTATCGTGCTGGGTTGTAATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTA
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCTTTA
* * * * *
63354534 AAATTTCACCCATGTCTT-TAAAGATTCTATAAAATGAAGGTAATGTTCGATGGTTGGCAATTCG
66 GAATTTCACCCATGT-TTCTAAAGATTCTAAAAAAT-AAGGTAATGCTCGATGATTGGCAATT-T
63354598 GG
128 GG
* * * *
63354600 GAATTGTGCCCTATCGTGCTGGCTTGCAATTTCTTGTTGGTTCAAAATAATCGAATATCCCCTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATAT-CCCTTT
* * * * *
63354665 AGAATTTCACCCATGTTTCCTAAAAATTCTAAAAAATAAGGCAATGCGCGATGATTAGAAATTTA
65 AGAATTTCACCCATGTTT-CTAAAGATTCTAAAAAATAAGGTAATGCTCGATGATTGGCAATTT-
*
63354730 AG
128 GG
63354732 GAATCGTGCCCTA-CTGTGCTGGGTT
1 GAATCGTGCCCTATC-GTGCTGGGTT
63354757 TCGATTTTCT
Statistics
Matches: 236, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
129 4 0.02
130 31 0.13
131 124 0.53
132 62 0.26
133 15 0.06
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (129 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCTTTA
GAATTTCACCCATGTTTCTAAAGATTCTAAAAAATAAGGTAATGCTCGATGATTGGCAATTTGG
Found at i:63357962 original size:23 final size:23
Alignment explanation
Indices: 63357933--63357979 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
63357923 AGAGCAAAGT
*
63357933 TTTATTTTTAACTCAACTTTATG
1 TTTATTTTTAACTCAACTATATG
63357956 TTTATTTTTAACTCAACTATATG
1 TTTATTTTTAACTCAACTATATG
63357979 T
1 T
63357980 AAAAGAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (23 bp):
TTTATTTTTAACTCAACTATATG
Found at i:63365326 original size:47 final size:48
Alignment explanation
Indices: 63365274--63365366 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
63365264 TATTTTACCT
* * * *
63365274 AAAAAAGAATGGA-AGGCTAAGGCGAAAACCCGCAAAGGGCGCTTTCA
1 AAAAAACAATAGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACTTTCA
*
63365321 AAAAAACAATAGAGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTT
1 AAAAAACAATAGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACTTT
63365367 GAGACCAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 11 0.28
48 29 0.73
ACGTcount: A:0.44, C:0.19, G:0.26, T:0.11
Consensus pattern (48 bp):
AAAAAACAATAGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACTTTCA
Found at i:63380992 original size:49 final size:49
Alignment explanation
Indices: 63380938--63381032 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
63380928 TATTTTACCT
* * * *
63380938 AAAAAAGAATGGAAAGGCTAAGGCGAAAACCCGCAAAGGGCGCTTTCAA
1 AAAAAACAATAGAAAGGCCAAGGCGAAAACCCGCAAAGGGCACTTTCAA
* *
63380987 AAAAAACAATAGAGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTT
1 AAAAAACAATAGAAAGGCCAAGGCGAAAACCCGCAAAGGGCACTTT
63381033 GAGACCAAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.45, C:0.19, G:0.25, T:0.11
Consensus pattern (49 bp):
AAAAAACAATAGAAAGGCCAAGGCGAAAACCCGCAAAGGGCACTTTCAA
Found at i:63382077 original size:133 final size:133
Alignment explanation
Indices: 63381839--63382114 Score: 394
Period size: 133 Copynumber: 2.1 Consensus size: 133
63381829 ATTTTACATG
* ** * * *
63381839 TCTTGTCTCCCTGAAGTTGCAGTGGAGTAGTTCGATGACGGTGAATCTTGTCTTCCTGAAGTTGT
1 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGAAAACGGCGAATCTTGTCTTCCTGAAATTGC
* *
63381904 AGTGAAACAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGT
66 AGTGAAACAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGC
63381969 AGA
131 AGA
* * *
63381972 TCTTGTTTCCCTGAAGTTGTAGTGGAGCGGATT-GAAAACGGCGAATCTTGTCTTCCTGAAATTG
1 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAG-TTCGAAAACGGCGAATCTTGTCTTCCTGAAATTG
* *
63382036 CAGT-AAAGTAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
65 CAGTGAAA-CAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGT
63382100 GCAGA
129 GCAGA
*
63382105 TCTCGTCTCC
1 TCTTGTCTCC
63382115 AGTGGAGCAG
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
132 3 0.02
133 121 0.96
134 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (133 bp):
TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGAAAACGGCGAATCTTGTCTTCCTGAAATTGC
AGTGAAACAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGC
AGA
Found at i:63387866 original size:22 final size:22
Alignment explanation
Indices: 63387839--63387961 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
63387829 ATGTGTATAT
63387839 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
63387861 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
63387885 TATGTGCTAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
63387908 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
63387930 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
63387955 ATGTGAT
1 ATGTGAT
63387962 GAATGTGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 32
0.62 0.10 0.27
Matches are distributed among these distances:
22 23 0.32
23 17 0.23
24 17 0.23
25 16 0.22
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:63387872 original size:47 final size:47
Alignment explanation
Indices: 63387818--63388289 Score: 703
Period size: 47 Copynumber: 10.0 Consensus size: 47
63387808 GATTTTATGA
** *
63387818 GATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63387865 GATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63387912 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63387959 GATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
63388006 GATGAATGTGAACATGCATATGTGTGCTAAGACCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
63388053 GATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63388100 GATGAATGTGAACATGCATATATGTGATAAGTCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63388147 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
63388194 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * * ** * *
63388241 GATAAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
63388288 GA
1 GA
63388290 GATATGTATG
Statistics
Matches: 393, Mismatches: 31, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
47 390 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:63388102 original size:22 final size:22
Alignment explanation
Indices: 63388075--63388196 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
63388065 CATGCATATG
63388075 TGTGATAAGGTCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
* *
63388097 TGTGATGAATGT-GAACAT-GCATATA
1 TGTGAT-AAGGTCG-A-ATGGC-CA-A
63388122 TGTGATAA-GTCCGAATGGCCAA
1 TGTGATAAGGT-CGAATGGCCAA
*
63388144 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
*
63388167 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
63388191 TGTGAT
1 TGTGAT
63388197 GAATGTGAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 23 0.30
23 19 0.25
24 18 0.23
25 17 0.22
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:63389856 original size:40 final size:40
Alignment explanation
Indices: 63389803--63390116 Score: 488
Period size: 40 Copynumber: 7.9 Consensus size: 40
63389793 TTGAGAGTTA
* *
63389803 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
63389843 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
63389883 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
63389923 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
63389963 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
63390003 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
63390043 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
63390083 TATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCT
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
63390117 GGAATTATGA
Statistics
Matches: 257, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.05
40 244 0.95
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:63390189 original size:29 final size:28
Alignment explanation
Indices: 63390156--63390311 Score: 91
Period size: 29 Copynumber: 5.5 Consensus size: 28
63390146 CTTCAACCGA
63390156 GCACTATGTGTGCCAGATCAATAGTTGAG
1 GCACTATGTGTGCCAGATC-ATAGTTGAG
* * * * ***
63390185 GCACTGTGTGTGCAAGTTCTTCAACCGA-
1 GCACTATGTGTGCCAGATCAT-AGTTGAG
*
63390213 GCACTATGTGTGCCAGATCTGTAGTTGAG
1 GCACTATGTGTGCCAGATC-ATAGTTGAG
** * * * *
63390242 GCACTATGTGTGTGAGTTCTTCAATCGA-
1 GCACTATGTGTGCCAGATCAT-AGTTGAG
* ** *
63390270 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCCAGA-TCATAGTTGAG
63390299 GCACTATGTGTGC
1 GCACTATGTGTGC
63390312 GAGTTCTTTA
Statistics
Matches: 96, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
28 41 0.43
29 55 0.57
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCCAGATCATAGTTGAG
Found at i:63390212 original size:57 final size:57
Alignment explanation
Indices: 63390124--63390348 Score: 288
Period size: 57 Copynumber: 3.9 Consensus size: 57
63390114 GCTGGAATTA
* * *
63390124 TGAGGCACTGTGTCTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAATAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
* *
63390181 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCTGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
** * * ** *
63390238 TGAGGCACTATGTGTGTGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
* * * * * *
63390295 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCAAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGT
63390349 CAGTGGGCAC
Statistics
Matches: 150, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 150 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
Found at i:63390222 original size:28 final size:27
Alignment explanation
Indices: 63390128--63390341 Score: 140
Period size: 28 Copynumber: 7.6 Consensus size: 27
63390118 GAATTATGAG
* * *
63390128 GCACTGTGTCTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCAAGTTCTT-AATCGA
* * * * *
63390156 GCACTATGTGTGCCAGATCAATAGTTGA
1 GCACTATGTGTGCAAGTTC-TTAATCGA
* *
63390184 GGCACTGTGTGTGCAAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAGTTCTT-AATCGA
* * * *
63390213 GCACTATGTGTGCCAGATCTGTAGTTGA
1 GCACTATGTGTGCAAGTTCT-TAATCGA
**
63390241 GGCACTATGTGTGTGAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGTTCTT-AATCGA
* ** *
63390270 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCAAG-TTCTTAATCGA
*
63390298 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCAAGTTC-TTAATCGA
*
63390327 GCGCTATGTGTGCAA
1 GCACTATGTGTGCAA
63390342 AATCAGTCAG
Statistics
Matches: 142, Mismatches: 35, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
28 75 0.53
29 67 0.47
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCAAGTTCTTAATCGA
Found at i:63390312 original size:29 final size:28
Alignment explanation
Indices: 63390213--63390314 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
63390203 CTTCAACCGA
* *
63390213 GCACTATGTGTGCCAGATCTGTAGTTGAG
1 GCACTATGTGTGCGAGAT-TGTAATTGAG
* * *
63390242 GCACTATGTGTGTGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATT-GT-AATTGAG
63390270 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATT-GTAATTGAG
63390299 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
63390315 TTCTTTAATC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
27 1 0.02
28 22 0.37
29 37 0.62
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTGTAATTGAG
Found at i:63391530 original size:47 final size:47
Alignment explanation
Indices: 63391476--63391807 Score: 538
Period size: 47 Copynumber: 7.1 Consensus size: 47
63391466 GATTTTATGA
** *
63391476 GATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
63391523 GATGAATGTAAACATGCATATATGTGCTAAGGCCGAATGACCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63391570 GATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63391617 GATGAATGTGAACATGCATATATGTGATAATGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63391664 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
63391711 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
63391758 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
63391805 GAT
1 GAT
63391808 AAACGTGGAA
Statistics
Matches: 270, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 270 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:63391666 original size:22 final size:23
Alignment explanation
Indices: 63391601--63391765 Score: 73
Period size: 23 Copynumber: 7.0 Consensus size: 23
63391591 ATGTGCTAAG
63391601 GCCGAATGGCCAATGTGATGAAT
1 GCCGAATGGCCAATGTGATGAAT
* *
63391624 G-TGAACAT-GCATATATGTGAT-AAT
1 GCCG-A-ATGGC-CA-ATGTGATGAAT
63391648 GCCGAATGGCCAATGTGATGAAT
1 GCCGAATGGCCAATGTGATGAAT
* *
63391671 G-TGAACAT-G-CATATGTG-TGATAAG
1 GCCG-A-ATGGCCA-ATGTGATG--AAT
63391695 GCCGAATGGCCAATGTGATGAAT
1 GCCGAATGGCCAATGTGATGAAT
* *
63391718 G-TGAACAT-G-CATATGTG-TGATAAG
1 GCCG-A-ATGGCCA-ATGTGATG--AAT
63391742 GCCGAATGGCCAATGTGATGAAT
1 GCCGAATGGCCAATGTGATGAAT
63391765 G
1 G
63391766 TGAACATGCA
Statistics
Matches: 105, Mismatches: 12, Indels: 50
0.63 0.07 0.30
Matches are distributed among these distances:
22 18 0.17
23 35 0.33
24 34 0.32
25 18 0.17
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.25
Consensus pattern (23 bp):
GCCGAATGGCCAATGTGATGAAT
Found at i:63393356 original size:131 final size:130
Alignment explanation
Indices: 63392948--63393414 Score: 437
Period size: 131 Copynumber: 3.6 Consensus size: 130
63392938 ATTATTCATT
* * * * *
63392948 TAAAAATTCTTTAAAACGAAGGCGAGAT-TT-GATATTTGGCAACTCGTGGAATCGTGCCCTAAC
1 TAAAAA-TCTTTAAAACGAAGG-TA-ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * * **
63393011 GTGCTGGTTTGCAATTT-CTCGTTTGCTCAAAATAATTGAATGTCGCTTT-TGAATTTCATTCAT
63 GTGCTGGGTTGCAATTTCCT-GTTCGTTCAAAATAATCGAATATCCCTTTAT-AATTTCACCCAT
63393074 GTTTTC
126 G-TTTC
* * * ** * *
63393080 TAGAGACTCTTTAAAACGACGGTAATACTCGATGTTTGGCAATT-TGGGAGTCGTGCCCTATCGT
1 TA-AAAATCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGT
* * * *
63393144 GCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAAAATTTCACCCATGTCT
65 GCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTATAATTTCACCCATGT-T
63393209 T-
129 TC
* *
63393210 TAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGT
1 TAAA-AATCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGT
* *
63393275 GCTGGGTTGCAATTTCCTGCTGGTTCAAAATAATCGAATATCCCCTTTATAATTTCACCCATGTT
65 GCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATAT-CCCTTTATAATTTCACCCATGTT
63393340 TCC
129 T-C
** * * * * * *
63393343 TAAAAAT-TTTAAAAAATAAGGCAATGTGCGATGATTAGAAATTCGAGGAATCGTGCCCTA-CTG
1 TAAAAATCTTT-AAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC-G
63393406 TGCTGGGTT
64 TGCTGGGTT
63393415 TCGATTTTCT
Statistics
Matches: 275, Mismatches: 47, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
129 1 0.00
130 39 0.14
131 127 0.46
132 102 0.37
133 6 0.02
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (130 bp):
TAAAAATCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTATAATTTCACCCATGTTTC
Found at i:63393409 original size:132 final size:131
Alignment explanation
Indices: 63393130--63393414 Score: 369
Period size: 132 Copynumber: 2.2 Consensus size: 131
63393120 AATTTGGGAG
* *
63393130 TCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAAAA
1 TCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGCTCGTTCAAAACAATCGAATATCCCTTTAAAA
* * * * * * * *
63393195 TTTCACCCATGTCTTTAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGA
66 TTTCACCCATGTCTTTAAAAATTCTATAAAAAGAAGGCAATGTGCGATGATTAGAAATTCGAGGA
63393260 A
131 A
* * * *
63393261 TCGTGCCCTATCGTGCTGGGTTGCAATTTCCTGCTGGTTCAAAATAATCGAATATCCCCTTTATA
1 TCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGCTCGTTCAAAACAATCGAATAT-CCCTTTAAA
* *
63393326 ATTTCACCCATGT-TTCCTAAAAATTTTA-AAAAATAAGGCAATGTGCGATGATTAGAAATTCGA
65 ATTTCACCCATGTCTT--TAAAAATTCTATAAAAAGAAGGCAATGTGCGATGATTAGAAATTCGA
63393389 GGAA
128 GGAA
63393393 TCGTGCCCTA-CTGTGCTGGGTT
1 TCGTGCCCTATC-GTGCTGGGTT
63393415 TCGATTTTCT
Statistics
Matches: 134, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
131 54 0.40
132 71 0.53
133 9 0.07
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (131 bp):
TCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGCTCGTTCAAAACAATCGAATATCCCTTTAAAA
TTTCACCCATGTCTTTAAAAATTCTATAAAAAGAAGGCAATGTGCGATGATTAGAAATTCGAGGA
A
Found at i:63414096 original size:27 final size:27
Alignment explanation
Indices: 63414065--63414215 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
63414055 TAAATTGTAC
63414065 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
63414092 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63414119 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
63414147 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63414174 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63414201 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63414216 GACTCAATAT
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 84 0.78
28 24 0.22
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63414152 original size:55 final size:55
Alignment explanation
Indices: 63414064--63414215 Score: 191
Period size: 55 Copynumber: 2.8 Consensus size: 55
63414054 TTAAATTGTA
* *
63414064 CAGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * **
63414118 CGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
63414173 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
63414216 GACTCAATAT
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 37 0.44
55 48 0.56
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:63421970 original size:27 final size:27
Alignment explanation
Indices: 63421939--63422089 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
63421929 TAAATTGTAC
63421939 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
63421966 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63421993 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
63422021 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63422048 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63422075 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63422090 GACTCAATAT
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 84 0.78
28 24 0.22
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63422026 original size:55 final size:55
Alignment explanation
Indices: 63421938--63422089 Score: 191
Period size: 55 Copynumber: 2.8 Consensus size: 55
63421928 TTAAATTGTA
* *
63421938 CAGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * **
63421992 CGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
63422047 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
63422090 GACTCAATAT
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 37 0.44
55 48 0.56
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:63458034 original size:27 final size:27
Alignment explanation
Indices: 63458003--63458180 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63457993 TAAATTGTAC
63458003 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63458030 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63458056 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63458084 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63458112 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63458139 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63458166 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63458181 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63458117 original size:82 final size:81
Alignment explanation
Indices: 63458004--63458159 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63457994 AAATTGTACA
* *
63458004 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63458068 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63458085 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63458150 TGCGAGTTGA
65 TGCGAATTGA
63458160 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63458171 original size:82 final size:81
Alignment explanation
Indices: 63458000--63458180 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63457990 GATTAAATTG
* *
63458000 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63458065 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63458081 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63458145 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63458163 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63458181 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63464198 original size:39 final size:40
Alignment explanation
Indices: 63464047--63464215 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
63464037 GGACTAAGAT
* * **
63464047 CCGAAGGCCTTTGTGCGAGAAACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
63464087 CAGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
63464127 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
63464167 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
63464206 CCGAAGGCAT
1 CCGAAGGCAT
63464216 GTGAACGAGG
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 32 0.30
40 76 0.70
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:63464236 original size:79 final size:80
Alignment explanation
Indices: 63464047--63464251 Score: 202
Period size: 79 Copynumber: 2.6 Consensus size: 80
63464037 GGACTAAGAT
* * * * * * *
63464047 CCGAAGGCCTTTGTGCGAGAAACTAAATCCGGGTTAAGTCCAGAGGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
* *
63464112 AAGCCGGGTTAAGTC
66 AAACCGGGCTAAGTC
** * * * *
63464127 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTA
1 CCGAAGGCATTCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
*
63464191 AAACCGGGCTATGTC
66 AAACCGGGCTAAGTC
* *
63464206 CCGAAGGCA-T-GTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGAAGGCATTCGTG--CGAGGAGCTAAATCCGGGTTAAGTCCCGAAGG
63464252 TACGCGAATT
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
77 3 0.03
78 15 0.15
79 44 0.43
80 40 0.39
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
AAACCGGGCTAAGTC
Found at i:63470501 original size:42 final size:42
Alignment explanation
Indices: 63470441--63470556 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 42
63470431 ATATGTGTTA
*
63470441 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG-TACTTGATT
1 TCGTGTAAGACC-CGTCTGGGACGTTGGCATAGATACTTGATT
*** *
63470483 TCGTGTAAGACCCTGTCTGGGAAAATGGCATAGATATTTGATT
1 TCGTGTAAGACCC-GTCTGGGACGTTGGCATAGATACTTGATT
* * *
63470526 ACATGTAAGACGACGTCTGGGACGTTGGCAT
1 TCGTGTAAGAC-CCGTCTGGGACGTTGGCAT
63470557 TCTACGAGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 27 0.45
43 31 0.52
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCCGTCTGGGACGTTGGCATAGATACTTGATT
Found at i:63474503 original size:25 final size:26
Alignment explanation
Indices: 63474475--63474525 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
63474465 AGGTAAGTGA
63474475 AATTTTTTTT-TAAGAATCATTTTGG
1 AATTTTTTTTCTAAGAATCATTTTGG
63474500 AATTTTTTTTCTAAGAATCATTTTGG
1 AATTTTTTTTCTAAGAATCATTTTGG
63474526 CCATCTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.55
Consensus pattern (26 bp):
AATTTTTTTTCTAAGAATCATTTTGG
Found at i:63477098 original size:26 final size:26
Alignment explanation
Indices: 63477069--63477121 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
63477059 ATTCATGGAG
63477069 TTAATGAATAGGGTCTTTCAATCCTA
1 TTAATGAATAGGGTCTTTCAATCCTA
63477095 TTAATGAATAGGGTCTTTCAATCCTA
1 TTAATGAATAGGGTCTTTCAATCCTA
63477121 T
1 T
63477122 CTTGATCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (26 bp):
TTAATGAATAGGGTCTTTCAATCCTA
Found at i:63481908 original size:50 final size:48
Alignment explanation
Indices: 63481779--63482095 Score: 200
Period size: 46 Copynumber: 6.7 Consensus size: 48
63481769 TAGTGCATAA
63481779 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG
* *
63481827 TGGTCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTC-ACATATCCG
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGA-A-AT-CG
* ** *
63481878 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGAC-A-C-ATCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG
* * * **
63481923 TAGCCGATG-CATGTCCGAGACCT-GTCTTACACTGGCT-TAC-ATCTCG
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CGAAATCG
* * * * ** *
63481969 AGGCTGATG-TATGTCCCAGACGT-GTCTTACACT-AGCTATCG-TCTCAA
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGAAATC-G
* * * *
63482016 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAATAT-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-GAA-ATCG
*
63482065 -GCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
63482096 AGCACACACA
Statistics
Matches: 217, Mismatches: 31, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
44 12 0.06
45 14 0.06
46 64 0.29
47 26 0.12
48 25 0.12
49 37 0.17
50 34 0.16
51 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG
Found at i:63482077 original size:94 final size:95
Alignment explanation
Indices: 63481780--63482095 Score: 282
Period size: 94 Copynumber: 3.3 Consensus size: 95
63481770 AGTGCATAAT
** * *
63481780 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGTGGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCG-TCTCATGCT-GATGCCATGTCCC
*
63481845 AGACATGGTCTTACACTAGCTCTC--ACATATCCG
64 AGACATGGTCTTACACTGGCTCTCTTA-ATAT--G
* * * *
63481878 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CATCTCATAGCCGATG-CATGTCCG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGTCTCAT-GCTGATGCCATGTCCC
* **
63481940 AGACCT-GTCTTACACTGGCT-TACATCT-CGA-G
64 AGACATGGTCTTACACTGGCTCT-C-T-TAATATG
* * *
63481971 GCTGATG-TATGTCCCAGACGT-GTCTTACACT-AGCTATCGTCTCAATGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGTCTC-ATGCTGATGCCATGTCCC
63482033 AGACATGGTCTTACACTGGCTCTCTTAATATG
64 AGACATGGTCTTACACTGGCTCTCTTAATATG
*
63482065 GCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
63482096 AGCACACACA
Statistics
Matches: 176, Mismatches: 26, Indels: 35
0.74 0.11 0.15
Matches are distributed among these distances:
89 1 0.01
90 11 0.06
91 13 0.07
92 17 0.10
93 18 0.10
94 57 0.32
95 13 0.07
96 8 0.05
97 2 0.01
98 1 0.01
99 35 0.20
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGTCTCATGCTGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCTTAATATG
Found at i:63485700 original size:47 final size:49
Alignment explanation
Indices: 63485629--63485756 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 49
63485619 AGTGTATAAT
** *
63485629 GCCGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCATC-C-AT-CAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTC-TCACAATCCAA
* *
63485676 GTCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCACATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCACA-ATCCAA
63485726 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
63485757 TTGACACATC
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
46 2 0.03
47 35 0.49
49 2 0.03
50 32 0.45
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCACAATCCAA
Found at i:63485752 original size:50 final size:47
Alignment explanation
Indices: 63485627--63485851 Score: 173
Period size: 46 Copynumber: 4.8 Consensus size: 47
63485617 ATAGTGTATA
** *
63485627 ATGCCGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCATCCATC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCATCCATC
* *
63485674 AAGTCGATGCCATGTCCCAGACATGGTCTTACAATAGCTC-TCACATATCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCATC-C--AT-C
* *
63485724 ATGCCGATGCCATGTCCCAGACATGGTCTTAC-ATTGACACAT-C-TC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAATAG-CTCATCCATC
* * * * *
63485769 GTAGCCGATG-CATATCCAAGACAT-GTCTTACACTGGCTTACAT-C-TC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACAATAGC-T-CATCCATC
* *
63485815 GAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACAATAGC
63485852 ATACACACTT
Statistics
Matches: 147, Mismatches: 20, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
44 8 0.05
45 16 0.11
46 47 0.32
47 36 0.24
49 6 0.04
50 33 0.22
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACAATAGCTCATCCATC
Found at i:63489485 original size:47 final size:47
Alignment explanation
Indices: 63489426--63489851 Score: 665
Period size: 47 Copynumber: 9.1 Consensus size: 47
63489416 GAAATGATAG
*
63489426 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63489473 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
63489520 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63489567 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63489614 TAAGGCCTAATAGCCGATGTGATGAATGTGAAGGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
63489661 TAAGGCCTAATAGCCGATGTGATGAATGTGAAGGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63489708 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63489755 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
63489801 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63489848 TAAG
1 TAAG
63489852 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 40 0.11
47 317 0.89
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:63490026 original size:37 final size:37
Alignment explanation
Indices: 63489970--63490048 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63489960 CCGAGCTCTA
* * *
63489970 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63490007 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63490044 AAGAC
1 AAGAC
63490049 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63495358 original size:16 final size:16
Alignment explanation
Indices: 63495337--63495369 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
63495327 GGCATTTCGT
63495337 GGGCTTGTGAGTATGC
1 GGGCTTGTGAGTATGC
63495353 GGGCTTGTGAGTATGC
1 GGGCTTGTGAGTATGC
63495369 G
1 G
63495370 AGTGCTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.45, T:0.30
Consensus pattern (16 bp):
GGGCTTGTGAGTATGC
Found at i:63498374 original size:93 final size:93
Alignment explanation
Indices: 63498262--63498431 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63498252 CCCATAAGCG
*
63498262 AACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63498326 CGAGTTCGGATGCCTAGTTACATCTCACA
65 CGAGTTCGGATGCCTAGTTACATCTCACA
**
63498355 AACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
63498420 GAGTTCGGATGC
66 GAGTTCGGATGC
63498432 TCAATCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 70 0.96
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:63498447 original size:46 final size:46
Alignment explanation
Indices: 63498253--63498433 Score: 183
Period size: 46 Copynumber: 3.9 Consensus size: 46
63498243 TGTAACCCGC
* * *
63498253 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* *
63498299 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * **
63498349 CTCA-CA---AACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
63498392 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
63498434 AATCATCCTA
Statistics
Matches: 109, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 64 0.59
47 29 0.27
50 5 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:63500868 original size:15 final size:15
Alignment explanation
Indices: 63500829--63500903 Score: 62
Period size: 15 Copynumber: 5.0 Consensus size: 15
63500819 CAAGAAAACT
*
63500829 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
* *
63500844 -AGATAGAGAAACCCG
1 GA-ATAAAGAAACCCA
*
63500859 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
* * *
63500874 GAATAAAGAGATCTA
1 GAATAAAGAAACCCA
*
63500889 GGATAAAGAAACCCA
1 GAATAAAGAAACCCA
63500904 AGATACGATA
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
14 1 0.02
15 44 0.96
16 1 0.02
ACGTcount: A:0.55, C:0.15, G:0.19, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:63503967 original size:93 final size:93
Alignment explanation
Indices: 63503855--63504026 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
63503845 CGCCCATAAG
*
63503855 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
63503919 AACGAGTTCGGATGCCTAGTTATATCTCA
65 AACGAGTTCGGATGCCTAGTTATATCTCA
**
63503948 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63504013 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63504027 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTATATCTCA
Found at i:63504042 original size:46 final size:46
Alignment explanation
Indices: 63503848--63504028 Score: 188
Period size: 46 Copynumber: 3.9 Consensus size: 46
63503838 TGTAACCCGC
* * *
63503848 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* * *
63503894 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
* * * * **
63503942 ATC-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 -CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
63503987 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
63504029 AATCATCCTA
Statistics
Matches: 107, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
44 1 0.01
45 6 0.06
46 65 0.61
47 30 0.28
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:63506607 original size:25 final size:27
Alignment explanation
Indices: 63506578--63506639 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
63506568 TTTTACTGTA
63506578 TTTATTATTACAGATATTT-T-AAATT
1 TTTATTATTACAGATATTTATAAAATT
* * *
63506603 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTACAGATATTTATAAAATT
*
63506630 ATTATTATTA
1 TTTATTATTA
63506640 GATAGGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 1 0.03
27 13 0.43
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTATTATTACAGATATTTATAAAATT
Found at i:63506639 original size:27 final size:25
Alignment explanation
Indices: 63506579--63506643 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 25
63506569 TTTACTGTAT
* * *
63506579 TTATTATTACAGATATTTTAAATTT
1 TTATTATTAGATATATTTTAAATTA
*
63506604 TTATGATTAGATATATTTATAAAATTA
1 TTATTATTAGATATATTT-T-AAATTA
63506631 TTATTATTAGATA
1 TTATTATTAGATA
63506644 GGAAAAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 15 0.45
26 1 0.03
27 17 0.52
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (25 bp):
TTATTATTAGATATATTTTAAATTA
Found at i:63508906 original size:26 final size:26
Alignment explanation
Indices: 63508835--63508912 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
63508825 TAAAACAGAT
* * *
63508835 AAAATTACTGAAATACCGTTATAGGTGA
1 AAAATTACTGATATACC-CT-TAGGAGA
* * *
63508863 AAAATTTACAGATTTACCCTTAGGAGG
1 AAAA-TTACTGATATACCCTTAGGAGA
*
63508890 AAAATTACTGATATACCCCTAGG
1 AAAATTACTGATATACCCTTAGG
63508913 GTTAAGGTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 16 0.40
27 9 0.22
28 5 0.12
29 10 0.25
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (26 bp):
AAAATTACTGATATACCCTTAGGAGA
Found at i:63512333 original size:41 final size:43
Alignment explanation
Indices: 63512254--63512347 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 43
63512244 TTAACGAGGT
* * *
63512254 GTAAGACCATGTCTGGGACATTGGCATCATTTTGTGA-TT-AC
1 GTAAGACCATGTCTAGGACATCGACATCATTTTGTGATTTCAC
** *
63512295 GTAAGACCATGTCTAGGACATCGACATTGTTATT-TGATTTCGC
1 GTAAGACCATGTCTAGGACATCGACATCATT-TTGTGATTTCAC
63512338 GTAAGACCAT
1 GTAAGACCAT
63512348 AGCTGGGCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 29 0.66
42 4 0.09
43 11 0.25
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACATCGACATCATTTTGTGATTTCAC
Found at i:63518664 original size:39 final size:40
Alignment explanation
Indices: 63518563--63518825 Score: 326
Period size: 39 Copynumber: 6.7 Consensus size: 40
63518553 TTGAATGATG
* *
63518563 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
63518602 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
63518643 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
63518682 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
63518721 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
63518760 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
63518799 AACCGGACTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
63518826 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 113 0.56
40 76 0.38
41 12 0.06
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:63522519 original size:38 final size:38
Alignment explanation
Indices: 63522476--63522637 Score: 162
Period size: 38 Copynumber: 4.0 Consensus size: 38
63522466 TTTCAAATTA
63522476 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* ** *
63522514 ACATGTTTAACCGTGATATATCCACTTAGCACCACATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC-GT--T
* *
63522555 GAATCAATATATGTAACCCTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
63522599 AGATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
63522637 A
1 A
63522638 ATGAATCAAT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
38 62 0.62
39 1 0.01
40 3 0.03
41 1 0.01
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 25 0.25
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:63522578 original size:85 final size:85
Alignment explanation
Indices: 63522483--63522797 Score: 371
Period size: 85 Copynumber: 3.8 Consensus size: 85
63522473 TTAACATGTA
* *
63522483 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGATATATCCACTTAGCACCA
1 TAACCCTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
63522548 CATTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
63522568 TAACCCTGGCATATCCACTTAGCACCACGTTAGATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCCTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
63522633 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * * * * * *
63522653 TAACAC---CATGT-TA-AT-GAATCA--ATATATG--TAACCGTGGTATATCCACTTAGCACCA
1 TAACCCTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
63522708 CGTTACATGTATCAATATGTG
66 CGTTA-ATGAATCAATATATG
* * * * * *
63522729 TAATCGTGGTATATCCACTTAGCACCACATTACACGTATAACCGTGGTATATCCACTTAGCACCA
1 TAACCCTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
63522794 CGTT
66 CGTT
63522798 TTTTTCATTC
Statistics
Matches: 193, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
75 32 0.17
76 16 0.08
77 5 0.03
79 7 0.04
80 2 0.01
81 2 0.01
82 8 0.04
84 4 0.02
85 86 0.45
86 31 0.16
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCCTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:63522590 original size:47 final size:47
Alignment explanation
Indices: 63522531--63522656 Score: 153
Period size: 38 Copynumber: 2.9 Consensus size: 47
63522521 TAACCGTGAT
*
63522531 ATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCCTGGC
1 ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCCTGGC
* * *
63522578 ATATCCACTTAGCACCACGTT-A-G-----ATGT-T-TAACCGTGGT
1 ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCCTGGC
63522616 ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
1 ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
63522657 ACCATGTTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
38 29 0.45
39 2 0.03
40 4 0.06
45 4 0.06
46 2 0.03
47 24 0.37
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (47 bp):
ATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCCTGGC
Found at i:63522668 original size:28 final size:28
Alignment explanation
Indices: 63522628--63522684 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
63522618 ATCCACTTAG
63522628 CACCACGTTAATGAATCAATATATGTAA
1 CACCACGTTAATGAATCAATATATGTAA
*
63522656 CACCATGTTAATGAATCAATATATGTAA
1 CACCACGTTAATGAATCAATATATGTAA
63522684 C
1 C
63522685 CGTGGTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.30
Consensus pattern (28 bp):
CACCACGTTAATGAATCAATATATGTAA
Found at i:63522722 original size:48 final size:48
Alignment explanation
Indices: 63522656--63522767 Score: 163
Period size: 48 Copynumber: 2.4 Consensus size: 48
63522646 ATATATGTAA
* *
63522656 CACCATGTTA-ATGAATCAATATATGTAACCGTGGTATATCCACTTAG
1 CACCACGTTACATGTATCAATATATGTAACCGTGGTATATCCACTTAG
* *
63522703 CACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCACTTAG
1 CACCACGTTACATGTATCAATATATGTAACCGTGGTATATCCACTTAG
* *
63522751 CACCACATTACACGTAT
1 CACCACGTTACATGTAT
63522768 AACCGTGGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 9 0.16
48 49 0.84
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31
Consensus pattern (48 bp):
CACCACGTTACATGTATCAATATATGTAACCGTGGTATATCCACTTAG
Found at i:63531048 original size:40 final size:40
Alignment explanation
Indices: 63530959--63531222 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
63530949 TTGAATGCTG
* *
63530959 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
63530998 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63531038 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63531077 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63531117 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63531157 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63531198 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63531223 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 52 0.25
40 143 0.70
41 9 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63531240 original size:120 final size:118
Alignment explanation
Indices: 63530959--63531255 Score: 329
Period size: 120 Copynumber: 2.5 Consensus size: 118
63530949 TTGAATGCTG
* *
63530959 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
63531019 ATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
63531077 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
63531142 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTACGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
63531198 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
63531256 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
118 23 0.15
119 63 0.41
120 64 0.42
121 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:63539429 original size:40 final size:40
Alignment explanation
Indices: 63539152--63539415 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
63539142 TTGAATGCTG
* * *
63539152 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
63539191 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63539231 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
63539270 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
63539310 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63539350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
63539391 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
63539416 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 52 0.25
40 142 0.70
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63539433 original size:120 final size:118
Alignment explanation
Indices: 63539152--63539448 Score: 329
Period size: 119 Copynumber: 2.5 Consensus size: 118
63539142 TTGAATGCTG
* *
63539152 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
63539212 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTCACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATCACTAAA
* ** * *
63539270 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
63539335 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATCACTA-AA
* * *
63539391 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
63539449 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 63 0.41
121 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATCACTAAA
Found at i:63552780 original size:26 final size:26
Alignment explanation
Indices: 63552750--63552801 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
63552740 AATAGTAGTT
*
63552750 AAATGTTA-AATATATATGTTGTTATG
1 AAATGCTAGAATATATAT-TTGTTATG
*
63552776 AAATGCTAGAATTTATATTTGTTATG
1 AAATGCTAGAATATATATTTGTTATG
63552802 GCCGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (26 bp):
AAATGCTAGAATATATATTTGTTATG
Found at i:63563550 original size:54 final size:53
Alignment explanation
Indices: 63563467--63563610 Score: 180
Period size: 53 Copynumber: 2.7 Consensus size: 53
63563457 GGATAATTTG
* *
63563467 TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATAACCCTATAGGA
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAAT-ACCCTATAGGA
* * * *
63563521 TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCTGTAGGG
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTATAGGA
* * * * *
63563574 TAGAATTAATGAGATACCCTTATGGGGTAAAATTACC
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACC
63563611 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 39 0.51
54 38 0.49
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (53 bp):
TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTATAGGA
Found at i:63563577 original size:26 final size:26
Alignment explanation
Indices: 63563466--63563593 Score: 157
Period size: 27 Copynumber: 4.8 Consensus size: 26
63563456 TGGATAATTT
* *
63563466 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACTGAAATACCC-TGTAGG
* *
63563493 GTAGAATTACCGAAATAACCCTATAGG
1 GTAGAATTACTGAAAT-ACCCTGTAGG
*
63563520 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCC-TGTAGG
*
63563547 GTAGAAATACTGAAATACCCTGTAGG
1 GTAGAATTACTGAAATACCCTGTAGG
* *
63563573 GTAGAATTAATGAGATACCCT
1 GTAGAATTACTGAAATACCCT
63563594 TATGGGGTAA
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
26 28 0.31
27 57 0.64
28 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (26 bp):
GTAGAATTACTGAAATACCCTGTAGG
Found at i:63563591 original size:53 final size:54
Alignment explanation
Indices: 63563466--63563594 Score: 179
Period size: 54 Copynumber: 2.4 Consensus size: 54
63563456 TGGATAATTT
* *
63563466 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATAACCCTATAGG
1 GTAGAATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGG
* * * *
63563520 ATAGAATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAAT-ACCCTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGG
* *
63563573 GTAGAATTAATGAGATACCCTT
1 GTAGAATTACTGAAATACCCTT
63563595 ATGGGGTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 28 0.42
54 38 0.58
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (54 bp):
GTAGAATTACTGAAATACCCTTGTAAGGTAGAAATACCGAAATAACCCTATAGG
Found at i:63563607 original size:27 final size:26
Alignment explanation
Indices: 63563470--63563609 Score: 97
Period size: 27 Copynumber: 5.2 Consensus size: 26
63563460 TAATTTGTAG
* * * *
63563470 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCTTAT-GGGTAA
* * *
63563497 AATTACCGAAATAACCC-TATAGGATAG
1 AATTACTGAAAT-ACCCTTAT-GGGTAA
*
63563524 AATTACTGAAATACCCTTGTAGGGTAGA
1 AATTACTGAAATACCCTTAT-GGGTA-A
*
63563552 AA-TACTGAAATACCCTGTA-GGGTAG
1 AATTACTGAAATACCCT-TATGGGTAA
* *
63563577 AATTAATGAGATACCCTTATGGGGTAA
1 AATTACTGAAATACCCTTAT-GGGTAA
63563604 AATTAC
1 AATTAC
63563610 CATTTTGCCC
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
25 4 0.04
26 21 0.23
27 61 0.66
28 7 0.08
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (26 bp):
AATTACTGAAATACCCTTATGGGTAA
Found at i:63568762 original size:40 final size:39
Alignment explanation
Indices: 63568572--63568755 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
63568562 CGAATGATGT
* * * *
63568572 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
63568612 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
63568652 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
63568690 TTCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
63568731 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63568756 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63568788 original size:79 final size:79
Alignment explanation
Indices: 63568625--63568778 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 79
63568615 GACTAAGATC
* * **
63568625 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAA
*
63568690 TTCGGGTTAAGTCT
66 TTCCGGTTAAGTCT
* *
63568704 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CT
*
63568767 ATA-TCCGGTTAA
63 AAATTCCGGTTAA
63568779 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 42 0.66
80 20 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAA
TTCCGGTTAAGTCT
Found at i:63575866 original size:40 final size:40
Alignment explanation
Indices: 63575776--63575960 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
63575766 TCGAATGATG
* * *
63575776 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
63575815 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
63575856 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
63575895 TCAGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
63575934 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
63575961 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:63575982 original size:79 final size:79
Alignment explanation
Indices: 63575829--63575983 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
63575819 AGACTAAGAT
* **
63575829 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
63575894 ATCAGGGTTAAGTC
66 ATCACGGTTAAGTC
* *
63575908 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
63575971 TATATC-CGGTTAA
63 TAAATCACGGTTAA
63575984 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCACGGTTAAGTC
Found at i:63577707 original size:44 final size:44
Alignment explanation
Indices: 63577571--63577737 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 44
63577561 CAATACCGAC
* * *
63577571 GTCCCAGACGTGGTCTTACATGT-AAT-TCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCTCA-TATCGATGCCTGT
**
63577614 GTCCCA-AGCA-GGTTCTTACACG-AAATCAGATAT-GATGCC-GAT
1 GTCCCAGA-CATGG-TCTTACACGTAAATCTCATATCGATGCCTG-T
* *
63577656 GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAATCTCATATCGATGCCTGT
*
63577700 GTCCCAGACATGGTCTTACACG-ATAA-CTCAGATCGATG
1 GTCCCAGACATGGTCTTACACGTA-AATCTCATATCGATG
63577738 TTCACATTCC
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 27 0.26
43 43 0.42
44 31 0.30
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGTAAATCTCATATCGATGCCTGT
Found at i:63577719 original size:86 final size:87
Alignment explanation
Indices: 63577566--63577732 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 87
63577556 GGGTACAATA
* * * *
63577566 CCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAAGCAGGTTCTT
1 CCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGAGGCCTCTGTCCCAAGCAGGTTCTT
63577631 ACACGA-AA-TCAGATATGATG
66 ACACGATAACTCAGATATGATG
* *
63577651 CCGATGTCCCAGACATGGTCTTACACGTAAATCTCA-AATCGAGGCCTGTGTCCC-AGACATGG-
1 CCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAGAATCGAGGCCTCTGTCCCAAG-CA-GGT
63577713 TCTTACACGATAACTCAGAT
62 TCTTACACGATAACTCAGAT
63577733 CGATGTTCAC
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
85 27 0.39
86 30 0.43
87 7 0.10
88 6 0.09
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (87 bp):
CCGACGTCCCAGACATGGTCTTACACGTAATTCAGAATCGAGGCCTCTGTCCCAAGCAGGTTCTT
ACACGATAACTCAGATATGATG
Found at i:63581087 original size:28 final size:27
Alignment explanation
Indices: 63581013--63581087 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
63581003 AAAGAACACT
* *
63581013 TTCGTGGCAATCTTCGAAAAAGGCGCC
1 TTCGTGGCAATCTTTGAAAAAGACGCC
* *
63581040 TTCGTGGCAATCTCTAAAAATAGACGCC
1 TTCGTGGCAATCTTTGAAAA-AGACGCC
* *
63581068 TTTGTTGCAATCTTTGAAAA
1 TTCGTGGCAATCTTTGAAAA
63581088 GGAAGCCTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 17 0.44
28 22 0.56
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (27 bp):
TTCGTGGCAATCTTTGAAAAAGACGCC
Found at i:63586848 original size:27 final size:27
Alignment explanation
Indices: 63586817--63586895 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
63586807 GTGTACTTTG
*
63586817 AATGAATCACATTTGTGGCATACTCTA
1 AATGAATCGCATTTGTGGCATACTCTA
* * * **
63586844 TATGAATTGCCTTTGTGGTGTACTCTA
1 AATGAATCGCATTTGTGGCATACTCTA
* *
63586871 AATGGATCGCTTTTGTGGCATACTC
1 AATGAATCGCATTTGTGGCATACTC
63586896 AGGATAGATT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
AATGAATCGCATTTGTGGCATACTCTA
Found at i:63588825 original size:12 final size:14
Alignment explanation
Indices: 63588808--63588840 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
63588798 TGCGAGAACA
63588808 TATGTGTA-G-TAC
1 TATGTGTAGGCTAC
63588820 TATGTGTAGGCTAC
1 TATGTGTAGGCTAC
63588834 TATGTGT
1 TATGTGT
63588841 TTAAGACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 1 0.05
14 10 0.53
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (14 bp):
TATGTGTAGGCTAC
Found at i:63588916 original size:50 final size:50
Alignment explanation
Indices: 63588809--63589239 Score: 355
Period size: 50 Copynumber: 8.5 Consensus size: 50
63588799 GCGAGAACAT
* * * *
63588809 ATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGTCAC
* *
63588861 ATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * ** * * * *
63588911 ATGTGTAGTATTAAATGCAGGCTACTATGCATACCCGATAGTTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCAC
* * * * * *
63588962 GTGTGTAGTACTGAGTACAGGCTACTACATGTATCAGATGGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * * *
63589012 GTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTGATAGGCCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * ** * * * *
63589062 ATGTGTAGTAATAAGTGTAGGCTACTGTGTGTACCCG-TTAAATTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCAC
* * * * * * *
63589113 GTGTGTCGTACTAAGTGCGGGCTACTACGTGTATCAGATGGATAAGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
* * * * *
63589163 GTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
63589213 ATGTGTAGTACTAAGTGCAGGCTACTA
1 ATGTGTAGTACTAAGTGCAGGCTACTA
63589240 TGCCTACTAG
Statistics
Matches: 297, Mismatches: 76, Indels: 14
0.77 0.20 0.04
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 194 0.65
51 68 0.23
52 27 0.09
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCAC
Found at i:63589007 original size:101 final size:101
Alignment explanation
Indices: 63588857--63589242 Score: 281
Period size: 101 Copynumber: 3.8 Consensus size: 101
63588847 CAGTTTTAGG
* * * * * *
63588857 TCACATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAT
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
63588922 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
66 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *
63588958 TCACGTGTGTAGTACTGAGTACAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
* * * ** * * * * *
63589023 TGAGTGCAGGCTACTACGTGTACCGGATTG-ATAGG
66 TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * ** *** * * ** * * * *
63589058 CCGCATGTGTAGTAATAAGTGTAGGCTACTGTGTGTACCCGTTAAATTCGATCACGTGTGTCGTA
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGAT-GGTTAGGTCACATGTGTAGTA
* * * ** * * * * **
63589123 CTAAGTGCGGGCTACTACGTGTATCAGATGGATAAG-
65 CTAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
* * * *
63589159 TCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
*
63589224 TAAGTGCAGGCTACTATGC
66 TAAATGCAGGCTACTATGC
63589243 CTACTAGAGA
Statistics
Matches: 216, Mismatches: 67, Indels: 5
0.75 0.23 0.02
Matches are distributed among these distances:
100 62 0.29
101 152 0.70
102 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAATGCAGGCTACTATGCATACCCGATAGTTTCGA
Found at i:63589136 original size:151 final size:151
Alignment explanation
Indices: 63588852--63589242 Score: 530
Period size: 151 Copynumber: 2.6 Consensus size: 151
63588842 TAAGACAGTT
* * * *
63588852 TTAGGTCACATGTGTAGTTCTAAGTGCAGGCTATTACGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* * ** *
63588917 AGTATTAAATGCAGGCTACTATGCATACCCGATAGTTTCGATCACGTGTGTAGTACTGAGTACAG
66 AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
63588982 GCTACTACATGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * *
63589003 TTAGGTCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTACCGGATTGATAGGCCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
* * ** * * * *
63589068 AGTAATAAGTGTAGGCTACTGTGTGTACCCGTTAAATTCGATCACGTGTGTCGTACTAAGTGCGG
66 AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
*
63589133 GCTACTACGTGTATCAGATGG
131 GCTACTACATGTATCAGATGG
* * * * *
63589154 ATAAGTCACGTGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATTGATATGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
*
63589219 AGTACTAAGTGCAGGCTACTATGC
66 AGTAATAAGTGCAGGCTACTATGC
63589243 CTACTAGAGA
Statistics
Matches: 205, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
151 205 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGT
AGTAATAAGTGCAGGCTACTATGCATACCCGATAAATTCGATCACGTGTGTAGTACTAAGTACAG
GCTACTACATGTATCAGATGG
Found at i:63593672 original size:33 final size:33
Alignment explanation
Indices: 63593635--63593702 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
63593625 CACAAGAGGG
*
63593635 TAAATTGCCGATGCCATATCCCAGATATGGTCT
1 TAAATTGCCAATGCCATATCCCAGATATGGTCT
63593668 TAAATTGCCAATGCCATATCCCAGATATGGTCT
1 TAAATTGCCAATGCCATATCCCAGATATGGTCT
63593701 TA
1 TA
63593703 CACTGGCTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (33 bp):
TAAATTGCCAATGCCATATCCCAGATATGGTCT
Found at i:63593823 original size:48 final size:48
Alignment explanation
Indices: 63593678--63594093 Score: 369
Period size: 48 Copynumber: 8.7 Consensus size: 48
63593668 TAAATTGCCA
* * * * * * *
63593678 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACAT-GTCGA-GGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT--ATGGCCG
* * *
63593726 ATGCCATATCCTAGACATGGTTTTACACTAGCTCTCATCTCAATA---CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--T-AATATGGCCG
* *
63593774 ATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
* * * *
63593822 ATGACATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
* * * **
63593870 ATGCCATCTCCCAGACATGGTCTTACACTAGCACACA-AATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATGGCCG
* * * * * *
63593918 ATGCCATGTCCCAAACATGGTCTTACATTGGCTCTTATAATATGACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
* * * * **
63593966 ATGCCATGTCCTAGGCATGGTCTTACACTAGCACACAT-ATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATGGCCG
* * * * * *
63594014 ATGCCATGCCCCAGACATGATCCTACACTGGCTCTCATAATGTGGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
63594062 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
63594094 ATACATATCA
Statistics
Matches: 292, Mismatches: 65, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
45 3 0.01
46 1 0.00
47 5 0.02
48 275 0.94
49 5 0.02
50 2 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:63594101 original size:96 final size:96
Alignment explanation
Indices: 63593678--63594103 Score: 464
Period size: 96 Copynumber: 4.4 Consensus size: 96
63593668 TAAATTGCCA
* * * * * * * * * * *
63593678 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACATGTCGAGGTCAATGCCATATCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
* * * *
63593743 TGGTTTTACACTAGCTCTCATCTCAA--T-ACCG
66 TGGTCTTACACTGGCTCTCA--T-AATGTGGCTG
* * * *** *
63593774 ATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAAT-GTGGCCGATGACATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGCCGATGCCATGTCCCAGAC
63593838 ATGGTCTTACACTGGCTCTCATAATGTGGCTG
65 ATGGTCTTACACTGGCTCTCATAATGTGGCTG
* * *
63593870 ATGCCATCTCCCAGACATGGTCTTACACTAGCACACAAATCAACGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
* * * *
63593935 TGGTCTTACATTGGCTCTTATAATATGACTG
66 TGGTCTTACACTGGCTCTCATAATGTGGCTG
* * *
63593966 ATGCCATGTCCTAGGCATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGCCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
* * *
63594031 TGATCCTACACTGGCTCTCATAATGTGGCGG
66 TGGTCTTACACTGGCTCTCATAATGTGGCTG
*
63594062 ATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
63594104 CCCAATTGTC
Statistics
Matches: 279, Mismatches: 46, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
93 2 0.01
94 1 0.00
95 3 0.01
96 272 0.97
97 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATAATGTGGCTG
Found at i:63599844 original size:24 final size:24
Alignment explanation
Indices: 63599817--63599863 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
63599807 TTGTCAGGAG
*
63599817 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTAGATAAGGGAT
63599841 AGGATTTAGGAGTAGATAAGGGA
1 AGGATTTAGGAGTAGATAAGGGA
63599864 GGAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTAGATAAGGGAT
Found at i:63599871 original size:24 final size:23
Alignment explanation
Indices: 63599817--63599876 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 23
63599807 TTGTCAGGAG
*
63599817 AGGATTTAGGAGTTGATAAGGGA
1 AGGATTTAGGAGTAGATAAGGGA
63599840 TAGGATTTAGGAGTAGATAAGGG-
1 -AGGATTTAGGAGTAGATAAGGGA
63599863 AGGAAATTTAGGAG
1 AGG--ATTTAGGAG
63599877 CTGATCAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
22 3 0.09
24 30 0.91
ACGTcount: A:0.37, C:0.00, G:0.38, T:0.25
Consensus pattern (23 bp):
AGGATTTAGGAGTAGATAAGGGA
Found at i:63601308 original size:26 final size:27
Alignment explanation
Indices: 63601269--63601380 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
63601259 AGGAAGCGTC
*
63601269 CTGGTGGCTATGCCACAATT-TCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
63601295 CTGGTGGCTCTGCCACATATT-TAT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
* *
63601322 CTGGTGGCTCTGTCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
63601350 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
63601376 CTGGT
1 CTGGT
63601381 AGCCATGCTG
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 26 0.35
27 31 0.42
28 16 0.22
29 1 0.01
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:63601360 original size:28 final size:26
Alignment explanation
Indices: 63601320--63601380 Score: 95
Period size: 28 Copynumber: 2.3 Consensus size: 26
63601310 CATATTTATA
*
63601320 TTCTGGTGGCTCTGTCACGATTATCTG
1 TTCTGGTGACTCTGTCAC-ATTATCTG
63601347 TATCTGGTGACTCTGTCACATTATCTG
1 T-TCTGGTGACTCTGTCACATTATCTG
63601374 TTCTGGT
1 TTCTGGT
63601381 AGCCATGCTG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 6 0.19
27 10 0.31
28 16 0.50
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.43
Consensus pattern (26 bp):
TTCTGGTGACTCTGTCACATTATCTG
Found at i:63607663 original size:24 final size:24
Alignment explanation
Indices: 63607631--63607695 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
63607621 AAAGTCTGTC
*
63607631 AGGAGAGGATTTAGGAGTTGATAA
1 AGGATAGGATTTAGGAGTTGATAA
63607655 AGGATAGGATTTAGGAGTTGATAA
1 AGGATAGGATTTAGGAGTTGATAA
* *
63607679 GGGATAGAATTTAGGAG
1 AGGATAGGATTTAGGAG
63607696 CAGATAATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.26
Consensus pattern (24 bp):
AGGATAGGATTTAGGAGTTGATAA
Found at i:63609165 original size:27 final size:27
Alignment explanation
Indices: 63609125--63609217 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
63609115 AGGAAGCGTC
*
63609125 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTAAT
**
63609152 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTAAT
** *
63609179 CTGGTGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCT-AAT
*
63609207 CTGGTGACTCT
1 CTGGTGGCTCT
63609218 ATAACTTTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.05
27 38 0.69
28 14 0.25
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTAAT
Found at i:63630751 original size:46 final size:46
Alignment explanation
Indices: 63630664--63630751 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
63630654 TTCTCTTATA
* *
63630664 GCCGACGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTG
1 GCCGACGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCGTG
*
63630710 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCT
1 GCCGACGCATGTCCCAGACATGTCTTACACT-GCCCTACGTCT
63630752 TAATGTCCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
46 35 0.92
47 3 0.08
ACGTcount: A:0.18, C:0.34, G:0.22, T:0.26
Consensus pattern (46 bp):
GCCGACGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCGTG
Found at i:63638003 original size:47 final size:47
Alignment explanation
Indices: 63637932--63638107 Score: 153
Period size: 47 Copynumber: 3.7 Consensus size: 47
63637922 TAAGGTGCCA
* * * *
63637932 ATGTCATGTCCTAGACACGATCTTACACTGGCTCATATCTCAAGTCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCG
* **
63637979 ATGTCATGTCCCAGACATGGTCTTACACTGGCT-ATCCTCTTGTAGCCG
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATC-TCAAGCCG
* * * * * * *
63638027 ATG-GATGTCCCAAATAAT-GTCTTACACTAGCCCTTGTCTCAATGCCG
1 ATGTCATGTCCCAGA-CATGGTCTTACACTGGCTCATATCTCAA-GCCG
*
63638074 ATGCCATGTCCC-GACATGGTCTTACACTGGCTCA
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCA
63638108 CACATGAATG
Statistics
Matches: 100, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
46 6 0.06
47 76 0.76
48 18 0.18
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
ATGTCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGCCG
Found at i:63638427 original size:13 final size:12
Alignment explanation
Indices: 63638406--63638439 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
63638396 GGGGTTGTTT
63638406 ACTAACTAATTA
1 ACTAACTAATTA
63638418 ACTAAACTAATTA
1 ACT-AACTAATTA
63638431 ACTAACTAA
1 ACTAACTAA
63638440 ACTAAAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (12 bp):
ACTAACTAATTA
Found at i:63638436 original size:17 final size:17
Alignment explanation
Indices: 63638406--63638444 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
63638396 GGGGTTGTTT
*
63638406 ACTAACTAATTAACTAA
1 ACTAACTAACTAACTAA
*
63638423 ACTAATTAACTAACTAA
1 ACTAACTAACTAACTAA
63638440 ACTAA
1 ACTAA
63638445 AGCAAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (17 bp):
ACTAACTAACTAACTAA
Found at i:63643283 original size:12 final size:12
Alignment explanation
Indices: 63643263--63643297 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
63643253 CCTTAAGATT
63643263 CCATATGGTTTTC
1 CCAT-TGGTTTTC
63643276 CCATTGGTTTTC
1 CCATTGGTTTTC
*
63643288 CAATTGGTTT
1 CCATTGGTTT
63643298 GGGAGAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.49
Consensus pattern (12 bp):
CCATTGGTTTTC
Found at i:63650156 original size:21 final size:21
Alignment explanation
Indices: 63650132--63650172 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
63650122 GCTGTGTGTG
63650132 ACACATGGCCTTGGTACACGC
1 ACACATGGCCTTGGTACACGC
63650153 ACACATGGCCTTGGTACACG
1 ACACATGGCCTTGGTACACG
63650173 ACCGTGTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (21 bp):
ACACATGGCCTTGGTACACGC
Found at i:63650275 original size:30 final size:30
Alignment explanation
Indices: 63650239--63650307 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
63650229 ATACGACCTA
63650239 GACACACGGCCATGTCTACTGGCCGTGTGT
1 GACACACGGCCATGTCTACTGGCCGTGTGT
63650269 GACACACGGCCATGTCTACTGGCCGTGTGT
1 GACACACGGCCATGTCTACTGGCCGTGTGT
63650299 GACACACGG
1 GACACACGG
63650308 GCTGGCATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (30 bp):
GACACACGGCCATGTCTACTGGCCGTGTGT
Found at i:63651700 original size:16 final size:16
Alignment explanation
Indices: 63651679--63651713 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
63651669 AAAAATTATA
63651679 AAAAATATAAAATCAG
1 AAAAATATAAAATCAG
63651695 AAAAATATAAAATCAG
1 AAAAATATAAAATCAG
63651711 AAA
1 AAA
63651714 TAAATTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (16 bp):
AAAAATATAAAATCAG
Found at i:63660123 original size:43 final size:42
Alignment explanation
Indices: 63660030--63660199 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
63660020 GATTACCGAG
* *
63660030 ATGTGATTACATGTAAGTCCATGTCTAGGACACTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTT
* *
63660072 ATTGTGATTACGTGCAAGACCATGTCTGGGACATTGGCATTGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTT
* * * * * * * *
63660116 ATATGATTTCGTGTAAGACCCTGTTTGGGATAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTT
* * * *
63660159 ATGTGATAACATGTAAGACTATATCTGGGATATGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGT
63660200 ACGAGCTTTA
Statistics
Matches: 102, Mismatches: 24, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
42 8 0.08
43 92 0.90
44 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGTT
Found at i:63663336 original size:54 final size:54
Alignment explanation
Indices: 63663254--63663366 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
63663244 TGGTAGTAAA
* * *
63663254 CACACAGGCAGAGACACGGCCTTGTGTCTCATCCGTGTGAAGGGCACGGTCTAG
1 CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
* *
63663308 CACAGAGGCAGAGACACGGTCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
1 CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
63663362 CACAC
1 CACAC
63663367 TGGCGTGTGC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.17
Consensus pattern (54 bp):
CACACAGGCAGAGACACGGCCGTGTGTCTCAGCCATGTGAAGGGCACGGTCTAG
Found at i:63663672 original size:20 final size:21
Alignment explanation
Indices: 63663633--63663672 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63663623 GTTATAATGA
63663633 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
63663654 CCACACGGTCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
63663673 ATTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:63667918 original size:51 final size:51
Alignment explanation
Indices: 63667859--63667971 Score: 172
Period size: 51 Copynumber: 2.2 Consensus size: 51
63667849 ACACTGATCA
*
63667859 CATTTATCACTTGCCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTATCACTTGCCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTAT
* * *
63667910 CATTTATCACTTGTCACTGATCAAATAAGTGTAGCTGAGGCTACCACTTAT
1 CATTTATCACTTGCCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTAT
* *
63667961 CACTTGTCACT
1 CATTTATCACT
63667972 GATCAGAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
CATTTATCACTTGCCACTGATCAAATAAGTGTAGCTAAAGCTACCACTTAT
Found at i:63679579 original size:33 final size:36
Alignment explanation
Indices: 63679498--63679584 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 36
63679488 GCTACTCGTT
* *
63679498 CAAATGCCTTCGAGACATAGCCGGTATAGTAACTCGCA
1 CAAATG-CTTCG-GACTTAACCGGTATAGTAACTCGCA
*
63679536 CAATTGCTTCGGACTTAACCGG-ATAGTAA-TCG-A
1 CAAATGCTTCGGACTTAACCGGTATAGTAACTCGCA
63679569 CAAATGCTTCGG-CTTA
1 CAAATGCTTCGGACTTA
63679585 GCCCAGAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
32 4 0.09
33 12 0.27
34 3 0.07
35 7 0.16
36 9 0.20
37 5 0.11
38 5 0.11
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (36 bp):
CAAATGCTTCGGACTTAACCGGTATAGTAACTCGCA
Found at i:63682110 original size:27 final size:27
Alignment explanation
Indices: 63682080--63682288 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
63682070 TCATAATCTG
63682080 CCACAAAGGCATTTCTTTCATGATTCA
1 CCACAAAGGCATTTCTTTCATGATTCA
** *
63682107 CCACAAAGGCAACTCTTTCATGATACA
1 CCACAAAGGCATTTCTTTCATGATTCA
* *
63682134 CCACAAAGGCAATTCTTTCATGATTCT
1 CCACAAAGGCATTTCTTTCATGATTCA
* ** * *
63682161 CTACAAATACATCTC-TTCATGATTCG
1 CCACAAAGGCATTTCTTTCATGATTCA
*
63682187 CCACAAAGGCAATTCTTTCATGATTCA
1 CCACAAAGGCATTTCTTTCATGATTCA
* * * *
63682214 CTATAAAGACATTTCTTTCATGATTCG
1 CCACAAAGGCATTTCTTTCATGATTCA
*
63682241 CCACAAAGGCATTTCTTTCATGATTCG
1 CCACAAAGGCATTTCTTTCATGATTCA
63682268 CCACAAAGGCAATTT-TTTCAT
1 CCACAAAGGC-ATTTCTTTCAT
63682289 TACGTGTTTA
Statistics
Matches: 154, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 20 0.13
27 130 0.84
28 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (27 bp):
CCACAAAGGCATTTCTTTCATGATTCA
Found at i:63682184 original size:80 final size:81
Alignment explanation
Indices: 63682079--63682288 Score: 278
Period size: 80 Copynumber: 2.6 Consensus size: 81
63682069 TTCATAATCT
* * * * *
63682079 GCCACAAAGGCATTTCTTTCATGATTCACCACAAAGGCAACTCTTTCATGATACACCACAAAGGC
1 GCCACAAAGACATCTCTTTCATGATTCGCCACAAAGGCAATTCTTTCATGATACACCACAAAGAC
63682144 AATTCTTTCATGATTC
66 AATTCTTTCATGATTC
* * * * * *
63682160 TCTACAAATACATCTC-TTCATGATTCGCCACAAAGGCAATTCTTTCATGATTCACTATAAAGAC
1 GCCACAAAGACATCTCTTTCATGATTCGCCACAAAGGCAATTCTTTCATGATACACCACAAAGAC
*
63682224 ATTTCTTTCATGATTC
66 AATTCTTTCATGATTC
* * *
63682240 GCCACAAAGGCATTTCTTTCATGATTCGCCACAAAGGCAATTTTTTCAT
1 GCCACAAAGACATCTCTTTCATGATTCGCCACAAAGGCAATTCTTTCAT
63682289 TACGTGTTTA
Statistics
Matches: 110, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
80 68 0.62
81 42 0.38
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.32
Consensus pattern (81 bp):
GCCACAAAGACATCTCTTTCATGATTCGCCACAAAGGCAATTCTTTCATGATACACCACAAAGAC
AATTCTTTCATGATTC
Found at i:63682274 original size:107 final size:107
Alignment explanation
Indices: 63682079--63682274 Score: 293
Period size: 107 Copynumber: 1.8 Consensus size: 107
63682069 TTCATAATCT
* *
63682079 GCCACAAAGGCATTTCTTTCATGATTCACCACAAAGGCAACTCTTTCATGATACACCACAAAGGC
1 GCCACAAAGGCAATTCTTTCATGATTCACCACAAAGACAACTCTTTCATGATACACCACAAAGGC
* *
63682144 AATTCTTTCATGATTCTCTACAAATACATCTCTTCATGATTC
66 AATTCTTTCATGATTCGCCACAAATACATCTCTTCATGATTC
* * ** * *
63682186 GCCACAAAGGCAATTCTTTCATGATTCACTATAAAGACATTTCTTTCATGATTCGCCACAAAGGC
1 GCCACAAAGGCAATTCTTTCATGATTCACCACAAAGACAACTCTTTCATGATACACCACAAAGGC
*
63682251 ATTTCTTTCATGATTCGCCACAAA
66 AATTCTTTCATGATTCGCCACAAA
63682275 GGCAATTTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
107 78 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (107 bp):
GCCACAAAGGCAATTCTTTCATGATTCACCACAAAGACAACTCTTTCATGATACACCACAAAGGC
AATTCTTTCATGATTCGCCACAAATACATCTCTTCATGATTC
Found at i:63698327 original size:39 final size:40
Alignment explanation
Indices: 63698268--63698552 Score: 370
Period size: 40 Copynumber: 7.2 Consensus size: 40
63698258 GGATTGATAC
* *
63698268 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
63698308 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
63698347 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
63698386 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
63698425 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
63698465 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
63698505 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
63698545 CC-GGCTAA
1 CCGGGCTAA
63698553 ACTCCGAAGG
Statistics
Matches: 229, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 114 0.50
40 115 0.50
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:63698398 original size:78 final size:79
Alignment explanation
Indices: 63698268--63698536 Score: 418
Period size: 78 Copynumber: 3.4 Consensus size: 79
63698258 GGATTGATAC
*
63698268 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGT
*
63698333 GCGAGTGACTA-ATT
66 GCGAGTTACTATA-T
63698347 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGT
63698411 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* * * *
63698425 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCTGGGCTAAG-CCCGAAGGCATTT
*
63698489 GTGCGAGTTACTATAA
64 GTGCGAGTTACTATAT
*
63698505 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
63698537 AGCTATATCC
Statistics
Matches: 177, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
78 76 0.43
79 43 0.24
80 58 0.33
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:63698451 original size:40 final size:40
Alignment explanation
Indices: 63698268--63698552 Score: 370
Period size: 39 Copynumber: 7.2 Consensus size: 40
63698258 GGATTGATAC
* * *
63698268 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
63698308 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
63698347 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
63698386 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63698425 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63698465 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63698505 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
63698545 CC-GGCTAA
1 CCGGGCTAA
63698553 ACTCCGAAGG
Statistics
Matches: 229, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 115 0.50
40 114 0.50
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63706683 original size:40 final size:40
Alignment explanation
Indices: 63706566--63706692 Score: 156
Period size: 39 Copynumber: 3.2 Consensus size: 40
63706556 GGATTGATAC
63706566 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAG-CTATA-T
* *
63706606 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATAT
* *
63706645 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATAT
63706685 CC-GGCTAA
1 CCGGGCTAA
63706693 ACTCCGAAGG
Statistics
Matches: 76, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
39 40 0.53
40 36 0.47
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATAT
Found at i:63713020 original size:40 final size:40
Alignment explanation
Indices: 63712965--63713149 Score: 311
Period size: 40 Copynumber: 4.6 Consensus size: 40
63712955 CGGATGATAA
*
63712965 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
63713005 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
63713045 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
63713085 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
63713125 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63713150 AGCAAGTAGT
Statistics
Matches: 140, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
Found at i:63713164 original size:80 final size:79
Alignment explanation
Indices: 63712961--63713181 Score: 302
Period size: 80 Copynumber: 2.8 Consensus size: 79
63712951 TATTCGGATG
* *
63712961 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
*
63713025 ATTTGTGTGAGTTACT
64 ATTTGTGCGAGTTACT
* ** *
63713041 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
63713106 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * *
63713121 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
63713182 ATGCTTGGGT
Statistics
Matches: 127, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
79 16 0.13
80 109 0.86
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:63719251 original size:30 final size:31
Alignment explanation
Indices: 63719197--63719301 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 31
63719187 ATATGGCTGA
*
63719197 CTAGGCCCAA-TCTTATTCA-AATGGCCCAT
1 CTAGGCCCAATTCATATTCATAATGGCCCAT
* *
63719226 CT-GGCCCAGTTCATATTCTTAATGGCCCA-
1 CTAGGCCCAATTCATATTCATAATGGCCCAT
63719255 CTAGGCCCAATTC-TCATTCAT-ATGGCCCAT
1 CTAGGCCCAATTCAT-ATTCATAATGGCCCAT
*
63719285 -TAGGCCCAAATCATATT
1 CTAGGCCCAATTCATATT
63719302 ATATACATGC
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
28 6 0.09
29 34 0.53
30 24 0.38
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (31 bp):
CTAGGCCCAATTCATATTCATAATGGCCCAT
Found at i:63719546 original size:24 final size:24
Alignment explanation
Indices: 63719500--63719554 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
63719490 ACTCGTGTGA
* *
63719500 CTAC-TTTCGACTTTTCGGCATTT
1 CTACTTTTCAACTTTTCAGCATTT
*
63719523 -TAGCTTTTCAACTTTTCAGTATTT
1 CTA-CTTTTCAACTTTTCAGCATTT
63719547 CTACTTTT
1 CTACTTTT
63719555 GCCGATTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 1 0.04
24 21 0.81
25 2 0.08
ACGTcount: A:0.16, C:0.22, G:0.09, T:0.53
Consensus pattern (24 bp):
CTACTTTTCAACTTTTCAGCATTT
Found at i:63722204 original size:26 final size:26
Alignment explanation
Indices: 63722168--63722223 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
63722158 AACACACCAA
*
63722168 TATCGCAGCAAGGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
63722194 TATCGCAGCAAAGTTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
63722220 TATC
1 TATC
63722224 TGTGGCGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:63722386 original size:26 final size:28
Alignment explanation
Indices: 63722348--63722401 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
63722338 ATCATAGTAC
*
63722348 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
* *
63722375 AAAT-AGTTATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
63722402 TTTTGGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:63722566 original size:17 final size:17
Alignment explanation
Indices: 63722544--63722596 Score: 106
Period size: 17 Copynumber: 3.1 Consensus size: 17
63722534 CCCAAGTAGT
63722544 CCCACACGCCCGTGTGG
1 CCCACACGCCCGTGTGG
63722561 CCCACACGCCCGTGTGG
1 CCCACACGCCCGTGTGG
63722578 CCCACACGCCCGTGTGG
1 CCCACACGCCCGTGTGG
63722595 CC
1 CC
63722597 TATCAAGCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.11, C:0.49, G:0.28, T:0.11
Consensus pattern (17 bp):
CCCACACGCCCGTGTGG
Found at i:63737949 original size:47 final size:45
Alignment explanation
Indices: 63737835--63738142 Score: 169
Period size: 47 Copynumber: 6.6 Consensus size: 45
63737825 TGATTTGTGC
* * *
63737835 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCA-GACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCA--CATGATGAGA
* * * * *
63737883 GCTAGTTTAAGACAGGTCTGGGACATGCATCAGCCACATTATGAGG
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACATGATGAGA
* * *
63737929 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCACA-TGATGAGA
* * *
63737977 GCCAGAGTATGACATGTCTGGGACATGCATCGGCCTCGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-C-C-ACATGATGAGA
** * * * ** *
63738024 GCCAGTGTAAGATGTGCCTGGGACACGCATCGGCTA-A-G-TTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACATGATGAGA
* ** * * *
63738067 GCTAGTGTAAGACATGTCTGGGGTATGCATCAGCACGCATATATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GC-CACAT-GATGAGA
63738115 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
63738143 GCATTGGCAA
Statistics
Matches: 198, Mismatches: 46, Indels: 31
0.72 0.17 0.11
Matches are distributed among these distances:
43 28 0.14
44 1 0.01
45 3 0.02
46 26 0.13
47 78 0.39
48 45 0.23
49 14 0.07
50 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGCCACATGATGAGA
Found at i:63737996 original size:94 final size:94
Alignment explanation
Indices: 63737835--63738151 Score: 315
Period size: 94 Copynumber: 3.4 Consensus size: 94
63737825 TGATTTGTGC
* * * * *
63737835 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTTTAAGACAGGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAAGATGAGTGCTAGTGTAAGACATGT
*
63737900 CTGGGACATGCATCAGC-CACATTATGAGG
65 CTGGGACATGCATCAGCACACATTATGAGA
* * *
63737929 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCCAGAGTATGACATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACA-AGATGAGTGCTAGTGTAAGACATGT
* * * *
63737994 CTGGGACATGCATCGGCCTCGACA-GA-GATA
65 CTGGGACATGCATCAG-CAC-ACATTATGAGA
** * * * **
63738024 GCCAGTGTAAGA-TGTGCCTGGGACA-CGCATCGGC-TAAG-TTTGTGCTAGTGTAAGACATGTC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAGATGAGTGCTAGTGTAAGACATGTC
** * *
63738085 TGGGGTATGCATCAGCACGCATATATAAGA
66 TGGGACATGCATCAGCACACAT-TATGAGA
*
63738115 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
63738152 ATTTATCCCA
Statistics
Matches: 178, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
88 2 0.01
89 2 0.01
90 31 0.17
91 16 0.09
92 11 0.06
93 16 0.09
94 80 0.45
95 15 0.08
96 2 0.01
97 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.21
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAGATGAGTGCTAGTGTAAGACATGTC
TGGGACATGCATCAGCACACATTATGAGA
Found at i:63751109 original size:30 final size:30
Alignment explanation
Indices: 63751074--63751131 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
63751064 TAGGCACTTC
63751074 CACACGGGTGAT-CCACACGCCCGTGTGTGA
1 CACACGGGT-ATACCACACGCCCGTGTGTGA
*
63751104 CACACGGGTATACCACATGCCCGTGTGT
1 CACACGGGTATACCACACGCCCGTGTGT
63751132 CATGGCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGGTATACCACACGCCCGTGTGTGA
Found at i:63752255 original size:47 final size:47
Alignment explanation
Indices: 63752168--63752512 Score: 564
Period size: 47 Copynumber: 7.3 Consensus size: 47
63752158 CCCTTCGGGA
* * * * * * *
63752168 CTTATCACATTTATACACTTTCACATCCTTCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63752215 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63752262 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63752309 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63752356 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63752403 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63752452 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63752499 CTTATCACATATAT
1 CTTATCACATATAT
63752513 TGTGACAACC
Statistics
Matches: 279, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 234 0.84
49 45 0.16
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63753731 original size:18 final size:18
Alignment explanation
Indices: 63753689--63753731 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
63753679 GCCCATTCCG
* *
63753689 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
63753707 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
63753725 AAGTATG
1 AAGTATG
63753732 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:63754258 original size:28 final size:27
Alignment explanation
Indices: 63754201--63754380 Score: 270
Period size: 28 Copynumber: 6.6 Consensus size: 27
63754191 TAAATTGTGC
*
63754201 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
63754228 AGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63754256 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63754284 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
63754311 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
63754339 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
63754366 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63754381 GACTTATTAT
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 66 0.46
28 79 0.54
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:63754265 original size:55 final size:55
Alignment explanation
Indices: 63754201--63754380 Score: 281
Period size: 55 Copynumber: 3.3 Consensus size: 55
63754191 TAAATTGTGC
* *
63754201 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
63754256 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * *
63754311 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
63754366 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63754381 GACTTATTAT
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
55 91 0.78
56 26 0.22
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Done.