Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 192 of 320
Found at i:63754342 original size:83 final size:82
Alignment explanation
Indices: 63754201--63754380 Score: 288
Period size: 83 Copynumber: 2.2 Consensus size: 82
63754191 TAAATTGTGC
*
63754201 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCAAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCAAGTTTGACTATATAGCACTAAGT
*
63754266 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* * *
63754284 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCAAGTTTGACTATATAGCACTAAGT
*
63754349 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
63754366 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63754381 GACTTATTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
82 22 0.24
83 68 0.76
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCAAGTTTGACTATATAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:63755976 original size:47 final size:47
Alignment explanation
Indices: 63755921--63756088 Score: 291
Period size: 47 Copynumber: 3.6 Consensus size: 47
63755911 GGTGTTACAT
* *
63755921 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63755968 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63756015 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
63756062 ATATATGCACATTCACATTCATCACAT
1 ATATATACACTTTCACATTCATCACAT
63756089 AAAATCCTAA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:63758070 original size:13 final size:13
Alignment explanation
Indices: 63758052--63758076 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63758042 TACTAAATTT
63758052 TCATGGATTCAAA
1 TCATGGATTCAAA
63758065 TCATGGATTCAA
1 TCATGGATTCAA
63758077 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:63762611 original size:46 final size:46
Alignment explanation
Indices: 63762559--63762724 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 46
63762549 CGTAACCCGC
* *
63762559 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCAT
* *
63762605 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCT-AGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCA--T
* *** * * * *
63762651 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCAT
63762698 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
63762725 TGAGTTTGGA
Statistics
Matches: 97, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 60 0.62
47 32 0.33
48 1 0.01
49 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCTCAT
Found at i:63762679 original size:93 final size:93
Alignment explanation
Indices: 63762567--63762738 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
63762557 GCCCATAAGT
* * * *
63762567 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63762632 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
63762660 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * *
63762725 TGAGTTTGGATGCC
66 CGAGCTCGGATGCC
63762739 CAAACATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:63766507 original size:25 final size:26
Alignment explanation
Indices: 63766461--63766512 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
63766451 AAAACACCAA
*
63766461 TATCGCAGCAAGGCTGCCAGTAACAG
1 TATCACAGCAAGGCTGCCAGTAACAG
*
63766487 TATCACAGCAA-GCTGCCAGTATCAG
1 TATCACAGCAAGGCTGCCAGTAACAG
63766512 T
1 T
63766513 TTATGTGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (26 bp):
TATCACAGCAAGGCTGCCAGTAACAG
Found at i:63766532 original size:27 final size:27
Alignment explanation
Indices: 63766502--63766562 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
63766492 CAGCAAGCTG
*
63766502 CCAGTATCAGTTTATGTGGCCAAGCCA
1 CCAGTATCAGTATATGTGGCCAAGCCA
*
63766529 CCAGTAACAGTATATGTGGCCAAGCCA
1 CCAGTATCAGTATATGTGGCCAAGCCA
63766556 CCAGTAT
1 CCAGTAT
63766563 AATACACTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (27 bp):
CCAGTATCAGTATATGTGGCCAAGCCA
Found at i:63778650 original size:49 final size:49
Alignment explanation
Indices: 63778548--63778667 Score: 127
Period size: 49 Copynumber: 2.4 Consensus size: 49
63778538 TGTCGACGCT
* *
63778548 ATGTACCAGACATGGTCTTACACTGGCTCTCATATAACGAAGCTGATGTC
1 ATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAACGAAGCTGATGCC
* ** * * *
63778598 ATGTCCTAGGGAGGTCTTACACTGGCTCTCATCTATC--AGTGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTGGCTCTCATATAACGAAG-CT-GATGCC
63778647 ATGTCCCAGACAGGTCTTACA
1 ATGTCCCAGACAGGTCTTACA
63778668 TTCACACAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
47 2 0.04
48 1 0.02
49 46 0.81
50 8 0.14
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (49 bp):
ATGTCCCAGACAGGTCTTACACTGGCTCTCATATAACGAAGCTGATGCC
Found at i:63779534 original size:30 final size:30
Alignment explanation
Indices: 63779500--63779557 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63779490 CCGAACCTAG
63779500 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
* * * *
63779530 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
63779558 GAGTTAAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAA
Found at i:63787979 original size:22 final size:22
Alignment explanation
Indices: 63787948--63787998 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
63787938 GTTCGTACAT
63787948 AGAGGATAGAAAAAAATTAAAC
1 AGAGGATAGAAAAAAATTAAAC
*
63787970 AGGGGATAGAAAAAAATTAAAC
1 AGAGGATAGAAAAAAATTAAAC
63787992 AGAGGAT
1 AGAGGAT
63787999 TGAAGAGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.59, C:0.04, G:0.24, T:0.14
Consensus pattern (22 bp):
AGAGGATAGAAAAAAATTAAAC
Found at i:63789267 original size:16 final size:16
Alignment explanation
Indices: 63789258--63789309 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
63789248 AATAGGGTTG
63789258 TAATGAAATAGAGCTT
1 TAATGAAATAGAGCTT
* * *
63789274 TAATGAAATAAAACTA
1 TAATGAAATAGAGCTT
* *
63789290 TAATGGAATAGAGCTA
1 TAATGAAATAGAGCTT
63789306 TAAT
1 TAAT
63789310 CAGTAATTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (16 bp):
TAATGAAATAGAGCTT
Found at i:63793175 original size:101 final size:101
Alignment explanation
Indices: 63793064--63793246 Score: 267
Period size: 101 Copynumber: 1.8 Consensus size: 101
63793054 CTCTGGTACC
* ** * *
63793064 CATAGTAGCCTACACTTAGTACTACACTTGCGACCTAGGAATCTGATACATGTAGTAGCCTGTAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCAC
63793129 TTAGTACTACACACGTGATCGAAGCTATCGGGTATG
66 TTAGTACTACACACGTGATCGAAGCTATCGGGTATG
* * * * *
63793165 CATAGTAGCCTGCACTTAGTAGTACACATGTGACCTAACAATTTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCAC
*
63793230 TTAGTAGTACACACGTG
66 TTAGTACTACACACGTG
63793247 TCCTAAAATC
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATCGAAGCTATCGGGTATG
Found at i:63793230 original size:50 final size:50
Alignment explanation
Indices: 63793055--63793293 Score: 192
Period size: 50 Copynumber: 4.7 Consensus size: 50
63793045 ACTGAAGCTC
* * ** * **
63793055 TCTGGTACCCATAGTAGCCTACACTTAGTACTACACTTGCGACCTAGGAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* ** * * * *
63793105 TCTGATACATGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* ** * *
63793156 TCGGGTATGCATAGTAGCCTGCACTTAGTAGTACACATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
63793206 TTTGGTACACGTAGTAGCCTGCACTTAGTAGTACACACGTGTCCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
** * *
63793255 TCGTCTTAAACACATAGTAGCTTGCACATAGTACTACAC
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACAC
63793294 GTGTGTTCTC
Statistics
Matches: 145, Mismatches: 40, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
49 3 0.02
50 79 0.54
51 37 0.26
52 26 0.18
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:63803333 original size:15 final size:15
Alignment explanation
Indices: 63803313--63803342 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63803303 CACCCGAAAA
63803313 ATGACTTGTGTGAAT
1 ATGACTTGTGTGAAT
63803328 ATGACTTGTGTGAAT
1 ATGACTTGTGTGAAT
63803343 GTTTAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
ATGACTTGTGTGAAT
Found at i:63813176 original size:93 final size:93
Alignment explanation
Indices: 63813064--63813234 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
63813054 GCCCATAAGT
* *
63813064 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63813129 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
63813157 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
63813222 CGAGTTCGGATGC
66 CGAGCTCGGATGC
63813235 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:63813231 original size:46 final size:46
Alignment explanation
Indices: 63813056--63813231 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
63813046 TGTAACCCGC
* * *
63813056 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
63813102 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * *
63813152 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
63813195 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
63813232 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:63819358 original size:26 final size:26
Alignment explanation
Indices: 63819302--63819358 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
63819292 TAATTTATGT
** *
63819302 TATGATAGTTATACCCCTAGGAGGTA
1 TATGATAGAAATACCCCTAGGAGATA
* * *
63819328 AATGATAGAAATACCCCTATGCGATA
1 TATGATAGAAATACCCCTAGGAGATA
63819354 TATGA
1 TATGA
63819359 ATGCTTGAGT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (26 bp):
TATGATAGAAATACCCCTAGGAGATA
Found at i:63821268 original size:27 final size:27
Alignment explanation
Indices: 63821249--63821379 Score: 201
Period size: 27 Copynumber: 4.9 Consensus size: 27
63821239 ATTACTGAAA
*
63821249 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
63821276 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
63821303 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
63821330 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
63821357 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
63821380 AAAATACCCT
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:63821387 original size:27 final size:27
Alignment explanation
Indices: 63821231--63821523 Score: 137
Period size: 27 Copynumber: 10.9 Consensus size: 27
63821221 AATACTTTAG
* **
63821231 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *****
63821258 TTTATAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
63821285 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
63821312 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
63821339 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
63821366 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
63821393 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * *
63821420 -TCAGTAAAATTACCAAAATACCCCTAGC
1 TTTA-CAAAATTACCAAAATA-CCCTCGA
*
63821448 TTGT--AAAATTACAAAAATACCCTCGA
1 TT-TACAAAATTACCAAAATACCCTCGA
* * * *
63821474 -TCAGTAGAATTACCAAAATACCC-CTA
1 TTTA-CAAAATTACCAAAATACCCTCGA
**
63821500 GTTTGTAAAATTACCAAAATACCC
1 -TTTACAAAATTACCAAAATACCC
63821524 CTGGCTTGTA
Statistics
Matches: 221, Mismatches: 36, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.00
26 9 0.04
27 204 0.92
28 6 0.03
29 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:63821404 original size:54 final size:54
Alignment explanation
Indices: 63821249--63821406 Score: 160
Period size: 54 Copynumber: 2.9 Consensus size: 54
63821239 ATTACTGAAA
* * ** * *
63821249 TACCCTCGATTTATAGAATTA-CTGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTATC-GTAATACCCTCGATTTACAAAATTACCGTTT
* ** *
63821303 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTACAAAATTACCGTTT
* *
63821357 TACCCTCGATTTACAAAATTA-C-TAAAATACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAAAATTATCGT--AATACCCTCGATTTACAAAATTACC
63821407 AAAATACCCT
Statistics
Matches: 93, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 90 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTACAAAATTACCGTTT
Found at i:63821415 original size:54 final size:54
Alignment explanation
Indices: 63821371--63821566 Score: 243
Period size: 54 Copynumber: 3.6 Consensus size: 54
63821361 CTCGATTTAC
* * * **
63821371 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCGATCAGT
* *
63821425 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCGATCAGT
* * * *
63821479 AGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCT-TGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTCGATCAGT
* *
63821533 AAAATTACCAAAACACCCCT-GATTTGTGAAATTA
1 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTA
63821567 TTGAAATACT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 117 0.94
55 6 0.05
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.27
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCGATCAGT
Found at i:63821415 original size:81 final size:81
Alignment explanation
Indices: 63821230--63821420 Score: 211
Period size: 81 Copynumber: 2.4 Consensus size: 81
63821220 GAATACTTTA
* * * * * *
63821230 GTTTACCAAATTACTGAAATACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAAT
1 GTTTACAAAATTACCGAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
****
63821295 TACCGTTTTACCCTCG
66 TACCAAAATACCCTCG
* * * ***
63821311 ATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
1 GTTTACAAAATTACCGAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
* *
63821376 TACTAAAATACCCTTG
66 TACCAAAATACCCTCG
*
63821392 GTTTACAAAATTACCAAAATACCCTCGAT
1 GTTTACAAAATTACCGAAATACCCTCGAT
63821421 CAGTAAAATT
Statistics
Matches: 85, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (81 bp):
GTTTACAAAATTACCGAAATACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
TACCAAAATACCCTCG
Found at i:63821456 original size:81 final size:81
Alignment explanation
Indices: 63821371--63821550 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
63821361 CTCGATTTAC
* * * *
63821371 AAAATTACTAAAATACCCTTGGTTTA-CAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACC
1 AAAATTACAAAAATACCC-TCGATCAGCAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACC
63821434 AAAATACCCCTAGCTTGT
64 AAAATACCCCTAGCTTGT
* * * **
63821452 AAAATTACAAAAATACCCTCGATCAGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACAAAAATACCCTCGATCAGCAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
63821517 AATACCCCTGGCTTGT
66 AATACCCCTAGCTTGT
* *
63821533 AAAATTACCAAAACACCC
1 AAAATTACAAAAATACCC
63821551 CTGATTTGTG
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 6 0.07
81 79 0.93
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (81 bp):
AAAATTACAAAAATACCCTCGATCAGCAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCCCTAGCTTGT
Found at i:63821524 original size:27 final size:27
Alignment explanation
Indices: 63821371--63821566 Score: 182
Period size: 27 Copynumber: 7.3 Consensus size: 27
63821361 CTCGATTTAC
* * * **
63821371 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
63821398 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
63821425 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * **
63821452 AAAATTACAAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
63821479 AGAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
63821506 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
63821533 AAAATTACCAAAACACCCCT-GATTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
63821560 GAAATTA
1 AAAATTA
63821567 TTGAAATACT
Statistics
Matches: 137, Mismatches: 27, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
26 10 0.07
27 117 0.85
28 10 0.07
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:63821575 original size:81 final size:81
Alignment explanation
Indices: 63821400--63821550 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
63821390 TGGTTTACAA
* **
63821400 AATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAA
1 AATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAA
*
63821464 ATACCCTCGATCAGTAG
65 ACACCCTCGATCAGTAG
* *
63821481 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
63821546 CACCC
66 CACCC
63821551 CTGATTTGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 58 0.92
82 5 0.08
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
CACCCTCGATCAGTAG
Found at i:63821635 original size:27 final size:26
Alignment explanation
Indices: 63821594--63821783 Score: 229
Period size: 27 Copynumber: 7.0 Consensus size: 26
63821584 TGTAAAATAT
63821594 CGAAATACCCATGTAGGGTAGAATTAC
1 CGAAATACCC-TGTAGGGTAGAATTAC
63821621 CGAAATACCTCTGTAGGGTAGAATTAC
1 CGAAATACC-CTGTAGGGTAGAATTAC
* *
63821648 CGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
*
63821675 CGAAATAACCCTGTAAGGTAGAATTAC
1 CGAAAT-ACCCTGTAGGGTAGAATTAC
*
63821702 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
* *
63821729 CAAAATACCCCTGTATGGTAGAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
* *
63821756 C-AAGATACCCTTGTGGGGTAAAATTAC
1 CGAA-ATACCC-TGTAGGGTAGAATTAC
63821783 C
1 C
63821784 ATTTTGCTCC
Statistics
Matches: 146, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
26 6 0.04
27 136 0.93
28 4 0.03
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (26 bp):
CGAAATACCCTGTAGGGTAGAATTAC
Found at i:63821701 original size:81 final size:81
Alignment explanation
Indices: 63821594--63821783 Score: 258
Period size: 81 Copynumber: 2.3 Consensus size: 81
63821584 TGTAAAATAT
* * * *
63821594 CGAAATACCCATGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCGAAATACCCC
1 CGAAATACCCATGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
63821659 TATAAGGTAGAATTAC
66 TATAAGGTAGAATTAC
63821675 CGAAATAACCC-TGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCC
1 CGAAAT-ACCCATGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCC
* *
63821739 CTGTATGGTAGAATTAC
65 CTATAAGGTAGAATTAC
* ** *
63821756 C-AAGATACCCTTGTGGGGTAAAATTACC
1 CGAA-ATACCCATGTAAGGTAGAATTACC
63821784 ATTTTGCTCC
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
80 6 0.06
81 87 0.90
82 4 0.04
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (81 bp):
CGAAATACCCATGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
TATAAGGTAGAATTAC
Found at i:63822022 original size:25 final size:24
Alignment explanation
Indices: 63821989--63822057 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 24
63821979 GGAAGTGCTA
63821989 AAAAGGCTTTGCCCCAGTTTACCG
1 AAAAGGCTTTGCCCCAGTTTACCG
63822013 AAAAGAGCTTTGCCCCAGTTTACCG
1 AAAAG-GCTTTGCCCCAGTTTACCG
63822038 AAAAGGGCTTTGCCCCAGTT
1 AAAA-GGCTTTGCCCCAGTT
63822058 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.12
25 37 0.86
26 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGGCTTTGCCCCAGTTTACCG
Found at i:63822081 original size:50 final size:50
Alignment explanation
Indices: 63821988--63822082 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
63821978 AGGAAGTGCT
**
63821988 AAAAAGGCTTTGCCCCAGTTTACCGAAAAGAGCTTTGCCCCAGTTTACCG
1 AAAAAGGCTTTGCCCCAGTTTACCGAAAAGAGCTAGGCCCCAGTTTACCG
* **
63822038 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAAGGCTTTGCCCCAGTTTACCGAAAAGA-GCTAGGCC-CCAGTT
63822083 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 9 0.24
50 23 0.61
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (50 bp):
AAAAAGGCTTTGCCCCAGTTTACCGAAAAGAGCTAGGCCCCAGTTTACCG
Found at i:63823267 original size:27 final size:27
Alignment explanation
Indices: 63823228--63823288 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
63823218 TGGGAAGTAG
* *
63823228 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGG-CTGATGGGCCATATGAACGAGA
*
63823256 TTGGGCTGATGGGCCATGTGAACGAGA
1 TTGGGCTGATGGGCCATATGAACGAGA
63823283 TTGGGC
1 TTGGGC
63823289 CTAAAGGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.20, C:0.15, G:0.39, T:0.26
Consensus pattern (27 bp):
TTGGGCTGATGGGCCATATGAACGAGA
Found at i:63823603 original size:26 final size:26
Alignment explanation
Indices: 63823567--63823618 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63823557 CAACGTAGAC
63823567 TTGTTAATAGGCCAAGGTAAGTAATA
1 TTGTTAATAGGCCAAGGTAAGTAATA
63823593 TTGTTAATAGGCCAAGGTAAGTAATA
1 TTGTTAATAGGCCAAGGTAAGTAATA
63823619 AACCCATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (26 bp):
TTGTTAATAGGCCAAGGTAAGTAATA
Found at i:63823665 original size:27 final size:27
Alignment explanation
Indices: 63823635--63823840 Score: 252
Period size: 27 Copynumber: 7.7 Consensus size: 27
63823625 TAATAAAGAC
* *
63823635 AAATTATCGAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63823662 AAATTAACGAAACACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
63823688 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
63823715 AAATTACCGAAATACCCCCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63823742 AAATTATCGAAACACCCTCGAGTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63823769 AAGTTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
63823796 AAACTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
63823823 AAATTACCAAAATACCCT
1 AAATTACCGAAATACCCT
63823841 TATAGTGTAA
Statistics
Matches: 148, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 21 0.14
27 127 0.86
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:63823840 original size:81 final size:80
Alignment explanation
Indices: 63823642--63823828 Score: 295
Period size: 81 Copynumber: 2.3 Consensus size: 80
63823632 GACAAATTAT
*
63823642 CGAAATACCCCCGATTTGTAAAATTAACGAAACACCCTCGATTGTGAAATTACTGAAATGCCCTC
1 CGAAATACCCCCGATTTGTAAAATTAACGAAACACCCTCGATTGTGAAATTACTGAAATACCCTC
* *
63823707 GATTTGTAAAATTAC
66 AATTTGTAAAACTAC
* *
63823722 CGAAATACCCCCGATTTGTGAAATTATCGAAACACCCTCGAGTTGT-AAAGTTACTGAAATACCC
1 CGAAATACCCCCGATTTGTAAAATTAACGAAACACCCTCGA-TTGTGAAA-TTACTGAAATACCC
63823786 TCAATTTGTAAAACTAC
64 TCAATTTGTAAAACTAC
*
63823803 CGAAATACCCTCGATTTGTAAAATTA
1 CGAAATACCCCCGATTTGTAAAATTA
63823829 CCAAAATACC
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
80 42 0.43
81 56 0.57
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (80 bp):
CGAAATACCCCCGATTTGTAAAATTAACGAAACACCCTCGATTGTGAAATTACTGAAATACCCTC
AATTTGTAAAACTAC
Found at i:63823849 original size:27 final size:27
Alignment explanation
Indices: 63823792--63823895 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 27
63823782 ACCCTCAATT
* * * *
63823792 TGTAAAACTACCGAAATACCCTCGAT-T
1 TGTAAAATTACCAAAATACCCT-TATAG
63823819 TGTAAAATTACCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCTTATAG
* * *
63823846 TGTAAAATTGCCAAAATACCATTGTAG
1 TGTAAAATTACCAAAATACCCTTATAG
* * *
63823873 TGTAAAATGACCGACATACCCTT
1 TGTAAAATTACCAAAATACCCTT
63823896 GTTGGGTAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.03
27 62 0.97
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTATAG
Found at i:63823850 original size:54 final size:53
Alignment explanation
Indices: 63823635--63823865 Score: 230
Period size: 54 Copynumber: 4.3 Consensus size: 53
63823625 TAATAAAGAC
* * * * *
63823635 AAATTATCGAAATACCCCCGATTTGTAAAATTAACGAAACACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCT-GATTTGTA
* * * *
63823688 AAATTACTGAAATGCCCTCGATTTGTAAAATTACCGAAATACCCCCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCCTGATTTGTA
* * * * * *
63823742 AAATTATCGAAACACCCTCGAGTTGTAAAGTTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCT-GATTTGTA
* * * *
63823796 AAACTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTATAGTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTGAT-TTGTA
* *
63823850 AAATTGCCAAAATACC
1 AAATTACCGAAATACC
63823866 ATTGTAGTGT
Statistics
Matches: 145, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
53 42 0.29
54 103 0.71
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTGATTTGTA
Found at i:63823897 original size:27 final size:27
Alignment explanation
Indices: 63823819--63823910 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
63823809 ACCCTCGATT
* *
63823819 TGTAAAATTACCAAAATACCCTTATAG
1 TGTAAAATGACCAAAATACCCTTGTAG
*
63823846 TGTAAAATTG-CCAAAATACCATTGTAG
1 TGTAAAA-TGACCAAAATACCCTTGTAG
* * *
63823873 TGTAAAATGACCGACATACCCTTGTTG
1 TGTAAAATGACCAAAATACCCTTGTAG
*
63823900 GGTAAAATGAC
1 TGTAAAATGAC
63823911 TATTTTGCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.04
27 52 0.95
28 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
TGTAAAATGACCAAAATACCCTTGTAG
Found at i:63826235 original size:49 final size:49
Alignment explanation
Indices: 63826146--63826540 Score: 405
Period size: 49 Copynumber: 7.9 Consensus size: 49
63826136 TCTATTGTGA
* *
63826146 GGTCACGAGTGTAGTACTAAATGCAGGCT-CTTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTAC-TACGTGTACCAGATAATT
* * * * * * *
63826195 GGTCGCATGTGTAGTACTAAGTGTAGACTACTATGCGTACCTGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * **
63826246 GATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
63826295 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * * *
63826345 GGTCGCATGTGTAGTACTAAGTGGAGACTACTATGCGTACCTGATAGCTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA--ATT
* * * **
63826396 GATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
63826445 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
63826495 GGTCGCATGTGTAGTACTAAGTGAAGACTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63826541 GCCTTGTCTA
Statistics
Matches: 279, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
49 118 0.42
50 87 0.31
51 74 0.27
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:63826416 original size:150 final size:150
Alignment explanation
Indices: 63826145--63826542 Score: 699
Period size: 150 Copynumber: 2.7 Consensus size: 150
63826135 ATCTATTGTG
* * *
63826145 AGGTCACGAGTGTAGTACTAAATGCAGGCT-CTTACGTGTACCAGATAATTGGTCGCATGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTAC-TACGTGTACCGGATAATTGGTCGCATGTGTAG
* *
63826209 TACTAAGTGTAGACTACTATGCGTACCTGATAACTTTGATCACGTATGTAGTACTAAGTGCAGGC
65 TACTAAGTGAAGACTACTATGCGTACCTGATAGCTTTGATCACGTATGTAGTACTAAGTGCAGGC
63826274 TACTACGTGTATCAGATGGTT
130 TACTACGTGTATCAGATGGTT
63826295 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * *
63826360 ACTAAGTGGAGACTACTATGCGTACCTGATAGCTTTGATCATGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGAAGACTACTATGCGTACCTGATAGCTTTGATCACGTATGTAGTACTAAGTGCAGGCT
63826425 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
63826445 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
*
63826510 ACTAAGTGAAGACTACTATGCGTACCAGATAGC
66 ACTAAGTGAAGACTACTATGCGTACCTGATAGC
63826543 CTTGTCTACA
Statistics
Matches: 238, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
150 237 1.00
151 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGAAGACTACTATGCGTACCTGATAGCTTTGATCACGTATGTAGTACTAAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:63828514 original size:40 final size:40
Alignment explanation
Indices: 63828457--63828710 Score: 305
Period size: 40 Copynumber: 6.3 Consensus size: 40
63828447 CTAACGGGGT
* * * * *
63828457 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
63828497 TAAGTCCCGAAGGCATTTGTGTGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63828537 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
63828577 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
63828617 TAAGCCCCGAAGGCATTTGTGCGAGTTA-TTATATCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * * *
63828657 TAAGTCCTGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
63828697 TAAGACCCGAAGGC
1 TAAGTCCCGAAGGC
63828711 CTTGTGTGAG
Statistics
Matches: 187, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 185 0.99
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:63828700 original size:80 final size:79
Alignment explanation
Indices: 63828457--63828746 Score: 313
Period size: 80 Copynumber: 3.7 Consensus size: 79
63828447 CTAACGGGGT
* * *
63828457 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTTCGGGCTAAGTCCCGAAGGCATTTGTG-TGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCT-A
63828521 GTTACAAATTCCGGGC
65 GTTACAAATTCC-GGC
* * * *
63828537 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
63828602 TTACAAATTCCAGGC
66 TTACAAATTCC-GGC
* * * *
63828617 TAAGCCCCGAAGGCATTTGTGCGAGTTATT-ATATCCAGGCTAAGTCCTGAAGGCATTTGTGCTA
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
* *
63828681 GTGAC-CATATCCGGAC
65 GTTACAAAT-TCCGG-C
* * * * *
63828697 TAAGACCCGAAGGC-CTTGTGTGAGTGGTT-ATATCC-GGCTAAATCCCGAAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAAT-TCCGGGCTAAGTCCCGAAG
63828747 ATAATTGGGT
Statistics
Matches: 183, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
78 13 0.07
79 23 0.13
80 147 0.80
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
TTACAAATTCCGGC
Found at i:63835399 original size:27 final size:27
Alignment explanation
Indices: 63835358--63835411 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63835348 CGTCATGTGA
* *
63835358 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
63835385 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
63835412 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:63835736 original size:51 final size:49
Alignment explanation
Indices: 63835660--63835798 Score: 152
Period size: 51 Copynumber: 2.8 Consensus size: 49
63835650 TATTGTGAGG
* *
63835660 TCACGTATGTTGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAA-TT-GA
* * * ** *
63835711 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGGACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGA
* * * *
63835760 TCACATGTGTAGTACTAAGTGTAGGCTACAATTCGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
63835799 AGATAGCCTT
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 33 0.45
50 2 0.03
51 38 0.52
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGA
Found at i:63842127 original size:28 final size:28
Alignment explanation
Indices: 63842087--63842188 Score: 170
Period size: 28 Copynumber: 3.6 Consensus size: 28
63842077 TGTGCCAAGG
63842087 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCTTGATGGGCCATATGAATGTGA
63842115 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCTTGATGGGCCATATGAATGTGA
*
63842143 TTAGG-TCTGATGGGCCATATGAATGTGA
1 TTGGGCT-TGATGGGCCATATGAATGTGA
*
63842171 TTGGGCCTGATGGGCCAT
1 TTGGGCTTGATGGGCCAT
63842189 GGGAACGAGA
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.99
ACGTcount: A:0.21, C:0.13, G:0.35, T:0.31
Consensus pattern (28 bp):
TTGGGCTTGATGGGCCATATGAATGTGA
Found at i:63842200 original size:28 final size:28
Alignment explanation
Indices: 63842087--63842206 Score: 168
Period size: 28 Copynumber: 4.3 Consensus size: 28
63842077 TGTGCCAAGG
*
63842087 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
63842115 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
63842143 TTAGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
** * *
63842171 TTGGGCCTGATGGGCCATGGGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
63842199 TTGGGCCT
1 TTGGGCCT
63842207 AAAGGGGCCA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 83 1.00
ACGTcount: A:0.21, C:0.13, G:0.37, T:0.29
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:63842554 original size:27 final size:27
Alignment explanation
Indices: 63842524--63842861 Score: 337
Period size: 27 Copynumber: 12.7 Consensus size: 27
63842514 TAATAAAGAG
* *
63842524 AAATTATCGAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
63842551 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
63842578 AAATTATCGAAATACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* * *
63842605 AAATTACCAAAATACCCTAGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
** *
63842631 AAA-TACTAAAATGCCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63842657 AAATTACCGAAATACCCCCAATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63842684 AAATT-CTCGAAACATCCTTGATTT-TA
1 AAATTAC-CGAAATACCCTCGATTTGTA
* * * *
63842710 AAATTACCAAAACACCGTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
63842737 AAATTACTGAAATACCCT-TATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
63842763 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63842790 GAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
63842817 AAATTACCAAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
63842844 AAATTATCAAAATACCCT
1 AAATTACCGAAATACCCT
63842862 TGTAGTGTAA
Statistics
Matches: 254, Mismatches: 49, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
25 14 0.06
26 59 0.23
27 181 0.71
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:63842760 original size:106 final size:106
Alignment explanation
Indices: 63842544--63842876 Score: 388
Period size: 106 Copynumber: 3.1 Consensus size: 106
63842534 AATACCCCCG
* *
63842544 ATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAAT
1 ATTTGTAAAATTACCGAAATACCCTCGATTTGT-AAATTATCGAAATACCCTTGATTTGTAAAAT
* * * *
63842609 TACCAAAATACCCT-AGA-TTGTGAAA-TACTAAAATGCCCTCG
65 TACCAAAACACCCTCA-ATTTGTAAAATTACTAAAATACCCT-T
* * * * *
63842650 ATTTGTAAAATTACCGAAATACCCCCAATTTGTGAAATTCTCGAAACATCCTTGATTT-TAAAAT
1 ATTTGTAAAATTACCGAAATACCCTCGATTTGT-AAATTATCGAAATACCCTTGATTTGTAAAAT
* *
63842714 TACCAAAACACCGTCAATTTGTAAAATTACTGAAATACCCTT
65 TACCAAAACACCCTCAATTTGTAAAATTACTAAAATACCCTT
* **
63842756 ATTTGTAAAATTACTGAAATACCCTCGATTTGTAGAATTATCGAAATACCCTCAATTTGTAAAAT
1 ATTTGTAAAATTACCGAAATACCCTCGATTTGTA-AATTATCGAAATACCCTTGATTTGTAAAAT
* *
63842821 TACCAAAACACCCCCGATTTGTAAAATTA-TCAAAATACCCTT
65 TACCAAAACACCCTCAATTTGTAAAATTACT-AAAATACCCTT
* *
63842863 GTAGTGTAAAATTA
1 AT-TTGTAAAATTA
63842877 TCAACATACC
Statistics
Matches: 192, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
105 20 0.10
106 107 0.56
107 55 0.29
108 10 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (106 bp):
ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAATTATCGAAATACCCTTGATTTGTAAAATT
ACCAAAACACCCTCAATTTGTAAAATTACTAAAATACCCTT
Found at i:63842870 original size:27 final size:27
Alignment explanation
Indices: 63842786--63842901 Score: 92
Period size: 27 Copynumber: 4.3 Consensus size: 27
63842776 ACCCTCGATT
* * * *
63842786 TGTAGAATTATCGAAATACCCTCAAT-T
1 TGTAAAATTATCAAAATACCC-CTATAG
* * * *
63842813 TGTAAAATTACCAAAACACCCCCGAT-T
1 TGTAAAATTATCAAAATA-CCCCTATAG
* *
63842840 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTATCAAAATACCCCTATAG
*
63842867 TGTAAAATTATCAACATACCCCTATAG
1 TGTAAAATTATCAAAATACCCCTATAG
*
63842894 GGTAAAAT
1 TGTAAAAT
63842902 GATTGTTTTG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
26 4 0.06
27 65 0.90
28 3 0.04
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCCTATAG
Found at i:63847820 original size:18 final size:18
Alignment explanation
Indices: 63847778--63847820 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
63847768 GCCCATTCCG
*
63847778 AAGTATATATATAGACAT
1 AAGTATGTATATAGACAT
*
63847796 ATA-TATGTATATATACAT
1 A-AGTATGTATATAGACAT
63847814 AAGTATG
1 AAGTATG
63847821 CCCATTCGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATAGACAT
Found at i:63852036 original size:41 final size:41
Alignment explanation
Indices: 63851968--63852058 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
63851958 ATCTGAGTAG
* *
63851968 CACATGGCCTGGGACATGGGCTGTCACACGA-CTGTGTGCTA
1 CACATAGCCTGGGACATGGGCTGTCACACGATC-GTGTGCCA
* * *
63852009 CACATAGCCTGGGACATGGGTTTTCACATGATCGTGTGCCA
1 CACATAGCCTGGGACATGGGCTGTCACACGATCGTGTGCCA
*
63852050 CACACAGCC
1 CACATAGCC
63852059 ACCCCACATG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 42 0.98
42 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (41 bp):
CACATAGCCTGGGACATGGGCTGTCACACGATCGTGTGCCA
Found at i:63852793 original size:3 final size:3
Alignment explanation
Indices: 63852785--63852832 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
63852775 TATGGAAATG
* * * *
63852785 GAT GAT GAT GAT GAT AAT GGT GGT GGT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
63852833 AGCTATAACT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.29, C:0.00, G:0.38, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:63852799 original size:24 final size:24
Alignment explanation
Indices: 63852770--63852823 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
63852760 ATATTTAATA
63852770 GATGAT-ATGGAAATGGATGATGAT
1 GATGATAATGGAAATGG-TGATGAT
***
63852794 GATGATAATGGTGGTGGTGATGAT
1 GATGATAATGGAAATGGTGATGAT
63852818 GATGAT
1 GATGAT
63852824 GATGATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.37, T:0.31
Consensus pattern (24 bp):
GATGATAATGGAAATGGTGATGAT
Found at i:63854692 original size:21 final size:21
Alignment explanation
Indices: 63854652--63854693 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63854642 ATAATCAGAG
*
63854652 TTTTTTTTGCAATTGAAAATA
1 TTTTTTTTGCAATTCAAAATA
* *
63854673 TTTTTTTTGCATTTCCAAATA
1 TTTTTTTTGCAATTCAAAATA
63854694 GTATGATGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTTTTTGCAATTCAAAATA
Found at i:63871987 original size:28 final size:28
Alignment explanation
Indices: 63871921--63872048 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
63871911 CATGAGATTG
* * **
63871921 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
63871950 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63871978 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
63872007 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63872035 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
63872049 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63872010 original size:57 final size:57
Alignment explanation
Indices: 63871921--63872048 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
63871911 CATGAGATTG
*
63871921 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
63871978 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
63872035 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
63872049 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:63881125 original size:17 final size:18
Alignment explanation
Indices: 63881093--63881126 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63881083 CTCTCCTAAA
63881093 ACGATTCCGATCTTTCTC
1 ACGATTCCGATCTTTCTC
*
63881111 ACGATTCTG-TCTTTCT
1 ACGATTCCGATCTTTCT
63881127 ATATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (18 bp):
ACGATTCCGATCTTTCTC
Found at i:63883162 original size:32 final size:31
Alignment explanation
Indices: 63883120--63883180 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
63883110 CGAAGTCACC
* *
63883120 AGATACATATATTATGGCTAGGCCACCAGAAT
1 AGATACATATA-TATGGCGAAGCCACCAGAAT
* *
63883152 AGATATATATATGTGGCGAAGCCACCAGA
1 AGATACATATATATGGCGAAGCCACCAGA
63883181 TTGCAGAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (31 bp):
AGATACATATATATGGCGAAGCCACCAGAAT
Found at i:63883244 original size:27 final size:26
Alignment explanation
Indices: 63883196--63883247 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63883186 GAGAGGCTGC
*
63883196 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63883222 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63883248 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63886116 original size:28 final size:27
Alignment explanation
Indices: 63886037--63886123 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
63886027 AACACGGCCG
* *
63886037 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
63886063 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
63886090 CTAGAAACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
63886118 CCAGAA
1 CCAGAA
63886124 CGCTTCCTCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.08
27 29 0.58
28 17 0.34
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:63889336 original size:39 final size:39
Alignment explanation
Indices: 63889188--63889448 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
63889178 TTGAATGATG
*
63889188 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
63889226 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
63889267 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
63889305 TCCGGGCTAAGCCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
63889344 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
63889383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
63889422 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
63889449 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 17, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
38 38 0.19
39 89 0.45
40 58 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:63895765 original size:57 final size:56
Alignment explanation
Indices: 63895661--63895776 Score: 187
Period size: 57 Copynumber: 2.1 Consensus size: 56
63895651 CCCTGACTTT
* * *
63895661 ATGCTCCATAGATCGGCACCAAAAAAAGCACCAGAATGTTTCCTACACTCGCCCAG
1 ATGCTCCATAGATCCGCACCAAAAAAAGCACCAGAACGTGTCCTACACTCGCCCAG
*
63895717 ATGCTCCATAGATCCGCACCGAAAACAAGCACCAGAACGTGTCCTACACTCGCCCAG
1 ATGCTCCATAGATCCGCACC-AAAAAAAGCACCAGAACGTGTCCTACACTCGCCCAG
63895774 ATG
1 ATG
63895777 TACCTTACCA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
56 19 0.35
57 36 0.65
ACGTcount: A:0.33, C:0.34, G:0.17, T:0.16
Consensus pattern (56 bp):
ATGCTCCATAGATCCGCACCAAAAAAAGCACCAGAACGTGTCCTACACTCGCCCAG
Found at i:63898872 original size:29 final size:29
Alignment explanation
Indices: 63898805--63898929 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
63898795 AGGTCTACAT
* *
63898805 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
63898833 TCATTCATATGCCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
63898862 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
63898891 ACATTCTTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
63898920 ACATTCATAT
1 ACATTCATAT
63898930 ACATGCTTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 20 0.23
29 67 0.77
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:63901152 original size:32 final size:32
Alignment explanation
Indices: 63901059--63901161 Score: 91
Period size: 32 Copynumber: 3.2 Consensus size: 32
63901049 ATTCTACTTC
* * * *
63901059 AAGCCTTCAGTAGCGGTATTATAATTGACACA
1 AAGCCATCAGTAACGGTAATATAATTGGCACA
* * * *
63901091 AAGGCATCGGTAACTGTAATA-AGTCTGGCACA
1 AAGCCATCAGTAACGGTAATATAAT-TGGCACA
* *
63901123 TAGCCATCAGTGACGGTAATATAATTGGCACA
1 AAGCCATCAGTAACGGTAATATAATTGGCACA
*
63901155 CAGCCAT
1 AAGCCAT
63901162 GGGTAAAAAT
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
31 2 0.04
32 50 0.93
33 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATAATTGGCACA
Found at i:63904309 original size:28 final size:30
Alignment explanation
Indices: 63904238--63904310 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
63904228 GTCATGAGAT
*
63904238 TGGCACTAAGTGTGCGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
63904269 --GCACTAAGTGTGCGAGTTTAAA-GTA-A
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
63904295 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63904311 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 1 0.03
27 3 0.08
28 14 0.36
29 21 0.54
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:63904577 original size:171 final size:172
Alignment explanation
Indices: 63904269--63904591 Score: 544
Period size: 171 Copynumber: 1.9 Consensus size: 172
63904259 AAATTGTACA
* *
63904269 GCACTAAGTGTGCGAGTTTAAAGTAATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
1 GCACTAAGTGTGCGAGTTTAAAGTAATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGT
*
63904334 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATAAGGGTGCGACTTTACCGAGTCGATT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATAAGGGTGCGACTTTACCGAGTCAATT
63904399 TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
63904441 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGT-AATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
63904506 -GTGC-AACCC-ATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACAT-AAGGGTGCGACTTTACCGAGTCAA
63904568 TTTTGGACAGCGGAAAAGGTAAGT
129 TTTTGGACAGCGGAAAAGGTAAGT
63904592 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
170 28 0.20
171 52 0.37
172 27 0.19
173 35 0.25
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (172 bp):
GCACTAAGTGTGCGAGTTTAAAGTAATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGT
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATAAGGGTGCGACTTTACCGAGTCAATT
TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:63912375 original size:29 final size:28
Alignment explanation
Indices: 63912340--63912417 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
63912330 TCATGAGATT
63912340 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
63912370 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
63912397 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
63912418 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:63912683 original size:173 final size:174
Alignment explanation
Indices: 63912370--63912696 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
63912360 AAATTGTACA
* *
63912370 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
63912435 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCAAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
63912500 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
63912544 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
63912609 TGTG-AAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCAAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
63912673 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
63912697 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 81 0.56
174 63 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCAAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:63918323 original size:51 final size:51
Alignment explanation
Indices: 63918252--63918411 Score: 250
Period size: 51 Copynumber: 3.2 Consensus size: 51
63918242 CTGATCACAT
*
63918252 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
63918303 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * * *
63918354 TTGTCACTTATCATTGATCAGATAAGTGTAG-TGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
63918404 TTGTCACT
1 TTATCACT
63918412 GATCAGAAGT
Statistics
Matches: 103, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
50 25 0.24
51 78 0.76
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:63922880 original size:40 final size:40
Alignment explanation
Indices: 63922786--63922930 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
63922776 TACTCGAATG
* *
63922786 ATATCCGGGTTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63922827 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63922867 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
63922907 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63922931 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63926929 original size:56 final size:56
Alignment explanation
Indices: 63926843--63926962 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
63926833 ACAAGGGATG
63926843 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
63926899 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
63926955 ATGGGCAA
1 ATGGGCAA
63926963 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:63929777 original size:27 final size:27
Alignment explanation
Indices: 63929719--63929898 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
63929709 ATATTGAGCC
* * *
63929719 CGCACACTCAGTGCTATATATAATCAACT
1 CGCACACTTAGTGC--TACATAATCAAAT
*
63929748 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
63929775 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** * *
63929803 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
63929830 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* * *
63929857 CGCACACTTAGTGCAACATAGTCAAAC
1 CGCACACTTAGTGCTACATAATCAAAT
63929884 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63929899 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 92 0.72
28 23 0.18
29 13 0.10
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:63929813 original size:55 final size:55
Alignment explanation
Indices: 63929719--63929898 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
63929709 ATATTGAGCC
* * * * *
63929719 CGCACACTCAGTGCTATATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATAGTCAACTCGCACACTTAGTGCAACATAATCAAAT
** * *
63929775 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCAACATAATCAAAT
* ** * *
63929830 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAC
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAATCAAAT
63929884 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63929899 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
54 43 0.41
55 46 0.44
56 15 0.14
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAATCAAAT
Found at i:63929836 original size:82 final size:81
Alignment explanation
Indices: 63929741--63929897 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 81
63929731 GCTATATATA
* *
63929741 ATCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCG
1 ATCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAAC-CG
63929805 CACACTTAGTGCCGCATG
64 CACACTTAGTGCCGCATG
* * **
63929823 ATCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAACCGCA
1 ATCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAACCGCA
63929888 CACTTAGTGC
66 CACTTAGTGC
63929898 TGTACAATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.21
82 53 0.78
83 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAACCGCA
CACTTAGTGCCGCATG
Found at i:63932924 original size:47 final size:47
Alignment explanation
Indices: 63932871--63933310 Score: 699
Period size: 47 Copynumber: 9.4 Consensus size: 47
63932861 CAGCCAAGAC
*
63932871 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63932918 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63932965 AGTGTATATATGTGATAAGG-CTAATGGCCGA--TG-TGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63933008 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63933055 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63933104 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63933151 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63933198 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
63933245 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
63933292 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
63933311 TCCCGAAGGG
Statistics
Matches: 367, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
43 30 0.08
44 12 0.03
46 13 0.04
47 267 0.73
49 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:63933486 original size:37 final size:37
Alignment explanation
Indices: 63933429--63933507 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
63933419 CCGAGCTCTA
* *
63933429 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGAT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGAT
** *
63933466 AAGACCCGATAACTTTGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
63933503 AAGAC
1 AAGAC
63933508 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 35 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGAT
Found at i:63935419 original size:28 final size:28
Alignment explanation
Indices: 63935387--63935454 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
63935377 TAAGTGTGCG
63935387 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCAATAAGTGTTCACGGTTGTGAGATT
63935415 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCAATAAGTGTTCACGGTTGTGAGATT
*
63935443 GGCACTAAGTGT
1 GGCAATAAGTGT
63935455 GCGGGCAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.31
Consensus pattern (28 bp):
GGCAATAAGTGTTCACGGTTGTGAGATT
Found at i:63935462 original size:43 final size:43
Alignment explanation
Indices: 63935415--63935503 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
63935405 TTGTGAGATT
63935415 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
63935458 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
63935501 GGC
1 GGC
63935504 TTGAAATGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
Found at i:63935520 original size:29 final size:29
Alignment explanation
Indices: 63935485--63935558 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
63935475 GTTGTGAGAT
* *
63935485 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
63935514 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
63935543 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63935559 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:63935924 original size:40 final size:40
Alignment explanation
Indices: 63935867--63936049 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
63935857 TTGAATGATG
* * * *
63935867 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATA
* *
63935907 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
63935947 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*** * *
63935987 TCCGTG-CTAAACCCCAAAGAGCATTCGTGCTAGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* *
63936027 TCCGGGCT-AGATCCCGAAGAGCA
1 TCCGGACTAAG-TTCCGAAGAGCA
63936050 ATCATGCTGG
Statistics
Matches: 122, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 106 0.87
41 7 0.06
42 7 0.06
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:63939653 original size:47 final size:47
Alignment explanation
Indices: 63939600--63939996 Score: 614
Period size: 47 Copynumber: 8.4 Consensus size: 47
63939590 CAGCCAAGAC
* *
63939600 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63939647 AGTGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
**
63939694 AGTGTATATATGTGATAAGGCCTAATGGTTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63939741 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63939790 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63939837 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63939884 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
63939931 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
63939978 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
63939997 TCCCGAAGGG
Statistics
Matches: 323, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 279 0.86
49 44 0.14
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:63939856 original size:143 final size:141
Alignment explanation
Indices: 63939600--63939996 Score: 623
Period size: 143 Copynumber: 2.8 Consensus size: 141
63939590 CAGCCAAGAC
*
63939600 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTCAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* **
63939665 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTTGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
63939730 ATGAATGTGAA
131 ATGAATGTGAA
63939741 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
63939806 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
63939871 TGATGAATGTGAA
129 TGATGAATGTGAA
* * * *
63939884 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * *
63939949 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
63939997 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
141 100 0.43
143 135 0.57
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAA
Found at i:63939923 original size:190 final size:188
Alignment explanation
Indices: 63939600--63939996 Score: 632
Period size: 190 Copynumber: 2.1 Consensus size: 188
63939590 CAGCCAAGAC
*
63939600 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTCAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTCAAAGTGTATATATGTAATAA
* **
63939665 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTTGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * *
63939730 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAA
*
63939790 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTCAAAGTGTATATATGTAATAA
*
63939855 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * *
63939920 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
131 ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAA
* *
63939978 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
63939997 TCCCGAAGGG
Statistics
Matches: 191, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
188 52 0.27
190 139 0.73
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTCAAAGTGTATATATGTAATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAA
Found at i:63940171 original size:37 final size:37
Alignment explanation
Indices: 63940115--63940193 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63940105 CCGAGCTCTA
* *
63940115 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
63940152 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63940189 AAGAC
1 AAGAC
63940194 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63942968 original size:47 final size:47
Alignment explanation
Indices: 63942896--63943342 Score: 777
Period size: 47 Copynumber: 9.5 Consensus size: 47
63942886 GTGTGTATAC
*
63942896 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
63942943 GTCAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
63942990 GTCAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
63943037 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
63943084 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
63943131 GTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
63943178 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
63943225 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
63943272 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
63943319 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
63943343 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 383 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:63942985 original size:22 final size:22
Alignment explanation
Indices: 63942957--63943032 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
63942947 AAGTGTATAT
63942957 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * * ****
63942979 ATGTGATGAATGTCAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
63943004 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
63943026 ATGTGAT
1 ATGTGAT
63943033 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:63943517 original size:37 final size:37
Alignment explanation
Indices: 63943461--63943539 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63943451 CCAAGCTCTA
* * *
63943461 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63943498 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63943535 AAGAC
1 AAGAC
63943540 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63949345 original size:40 final size:40
Alignment explanation
Indices: 63949251--63949395 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
63949241 TACTCGAATG
* *
63949251 ATATCCGGGCTAAGTCCCGAAGGCTTTTGCGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63949292 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63949332 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
63949372 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63949396 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63953641 original size:17 final size:17
Alignment explanation
Indices: 63953619--63953652 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63953609 TTCTTCATGA
63953619 ATATCCCTTTAAAAAAT
1 ATATCCCTTTAAAAAAT
63953636 ATATCCCTTTAAAAAAT
1 ATATCCCTTTAAAAAAT
63953653 TACCCTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATCCCTTTAAAAAAT
Found at i:63959828 original size:28 final size:27
Alignment explanation
Indices: 63959764--63959915 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
63959754 TTATTAAGTC
* *
63959764 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
63959791 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
63959819 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63959846 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
63959874 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
63959901 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63959916 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63959848 original size:55 final size:55
Alignment explanation
Indices: 63959764--63959940 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
63959754 TTATTAAGTC
* * *
63959764 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
63959819 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
63959874 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
63959930 CGCACACTTAG
1 CGCACACTTAG
63959941 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:63964558 original size:28 final size:28
Alignment explanation
Indices: 63964495--63964648 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
63964485 ATATTAAGTC
* *
63964495 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63964522 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63964550 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63964578 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63964606 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63964634 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63964649 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:63972780 original size:28 final size:28
Alignment explanation
Indices: 63972717--63972870 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
63972707 ATATTAAGTC
* *
63972717 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63972744 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63972772 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63972800 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63972828 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
63972856 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63972871 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:63983830 original size:28 final size:27
Alignment explanation
Indices: 63983790--63983853 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
63983780 CCTAAATAAT
63983790 AAAAATAAGCTTAAAGAGGAATAAAA-TA
1 AAAAATAAGCTTAAA-AGG-ATAAAAGTA
*
63983818 AAAAAT-AGTCTTAAAATGATAAAAGTA
1 AAAAATAAG-CTTAAAAGGATAAAAGTA
63983845 AAAACATAA
1 AAAA-ATAA
63983854 AAAATAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 6 0.19
27 10 0.32
28 14 0.45
29 1 0.03
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (27 bp):
AAAAATAAGCTTAAAAGGATAAAAGTA
Found at i:63990793 original size:30 final size:30
Alignment explanation
Indices: 63990747--63990806 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
63990737 TTCCCGAGCC
63990747 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
*
63990777 TAGGGGCAAAAA-TGTAATTTTGCAAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
63990807 CGTATTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:63997786 original size:131 final size:127
Alignment explanation
Indices: 63997604--63997981 Score: 395
Period size: 129 Copynumber: 2.9 Consensus size: 127
63997594 AGAGTATGAT
* * * *
63997604 GAAATTCTAAAGGAATC-TTCGATTATTGAGCGAACGGGAAATCGCAACCCAGCACGATAGGGCA
1 GAAATTCTAAAGGGA-CATTCGATTTTTGAGCAAACGGGAAATTGCAACCCAGCACGATAGGGCA
* * * * *
63997668 TGATTCCCGAATTGCCAAACATCGAGTATTACCTTCATTTTAAAGAGTTTTTAGAAGATACGAAC
65 CGATTCCCGAATTGCCAAATATC-A-CATTGCCTTCATTTTAAAGAGTTTTTAGAAGACACGAAC
*
63997733 GAAATTCTAAAGGGACATTCGATTGCTTTGAGCAAACGAGAAATTGCAACCCAGCAC-ATTAGGG
1 GAAATTCTAAAGGGACATTCGATT--TTTGAGCAAACGGGAAATTGCAACCCAGCACGA-TAGGG
* * * *
63997797 CACGATGCCGCGAATTGTCAAATAT-ACATCGCCTTCATTTTAAAG-GATTTTTAGAAGACATGA
63 CACGATTCC-CGAATTGCCAAATATCACATTGCCTTCATTTTAAAGAG-TTTTTAGAAGACACGA
63997860 AC
126 AC
* * * * * *
63997862 GAAATTATGAAGGGATATTCGATCATTTTGAGCAAACGGGAAATTGCAACCCAACATGTTAGGGC
1 GAAATTCTAAAGGGACATTCGAT--TTTTGAGCAAACGGGAAATTGCAACCCAGCACGATAGGGC
* * * *
63997927 ACGATTCCGGAAATTGCAAAATATCAAACCTTGCCTTCATTTTAAAGAATTTTTA
64 ACGATTCCCG-AATTGCCAAATATC--ACATTGCCTTCATTTTAAAGAGTTTTTA
63997982 AATGAATATT
Statistics
Matches: 207, Mismatches: 28, Indels: 25
0.80 0.11 0.10
Matches are distributed among these distances:
128 3 0.01
129 125 0.60
130 2 0.01
131 40 0.19
132 37 0.18
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (127 bp):
GAAATTCTAAAGGGACATTCGATTTTTGAGCAAACGGGAAATTGCAACCCAGCACGATAGGGCAC
GATTCCCGAATTGCCAAATATCACATTGCCTTCATTTTAAAGAGTTTTTAGAAGACACGAAC
Found at i:63999021 original size:33 final size:33
Alignment explanation
Indices: 63998984--63999051 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
63998974 AGGGCTAAAT
63998984 TAATTTTATTATAAATTATAATGGATTGAAGAA
1 TAATTTTATTATAAATTATAATGGATTGAAGAA
63999017 TAATTTTATTATAAATTATAATGGATTGAAGAA
1 TAATTTTATTATAAATTATAATGGATTGAAGAA
63999050 TA
1 TA
63999052 TGCTTACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.43
Consensus pattern (33 bp):
TAATTTTATTATAAATTATAATGGATTGAAGAA
Found at i:64001070 original size:44 final size:44
Alignment explanation
Indices: 64001007--64001272 Score: 339
Period size: 44 Copynumber: 6.2 Consensus size: 44
64000997 CGGGAACACT
* *
64001007 AATCTGTTATTTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* * *
64001051 AATCTG-TCATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCT-ATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* **
64001095 AATCTGC--TC---GATCTGGC-CTCTGACAATACAGAGACACCA
1 AATCTGCTATCTTTGATCT-GCTCTCTGCCAATACAGAGATGCCA
* * *
64001134 AATCTGCTATCTTTGATCTGCTCTCCGCTAATACAGAGATCCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
* *
64001178 AATCTGCTTTCTTTGATCTGCTCTCTGACAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
*
64001222 AATCTACTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
64001266 AATCTGC
1 AATCTGC
64001273 AGGATTCGCC
Statistics
Matches: 191, Mismatches: 22, Indels: 18
0.83 0.10 0.08
Matches are distributed among these distances:
39 30 0.16
40 2 0.01
41 2 0.01
42 2 0.01
43 3 0.02
44 152 0.80
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (44 bp):
AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCA
Found at i:64003298 original size:37 final size:37
Alignment explanation
Indices: 64003257--64003358 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
64003247 ACCTCAGACG
* * *
64003257 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64003294 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64003331 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
64003359 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64003582 original size:47 final size:47
Alignment explanation
Indices: 64003481--64003836 Score: 514
Period size: 47 Copynumber: 7.5 Consensus size: 47
64003471 TCGGGACTTG
* * * * * * * *
64003481 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * *
64003528 TCGCATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
64003575 TCACATATATTCACTTTCACCTTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
64003622 TCACATATATACACTTTCACATTCATTACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
64003669 TCACATATATACCCTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
64003716 TCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
64003763 TCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
64003812 TCACATATATATACACTTTCACATT
1 TCAC--ATATATACACTTTCACATT
64003837 TATTCAAATA
Statistics
Matches: 282, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 216 0.77
49 66 0.23
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:64006740 original size:124 final size:128
Alignment explanation
Indices: 64006597--64007057 Score: 331
Period size: 129 Copynumber: 3.6 Consensus size: 128
64006587 TATTTAGTCC
** ** * * *
64006597 AACGAGAAAATCAAAACCCAGCACAGTAGGGCACGATTCTTTGAATTTCTAAACATCAAGCATTG
1 AACGAG-AAATCGCAACCCAGCACAGTAGGGCACGATTC-CCGAATTGCCAAACATCAAGCATTA
* *
64006662 CCTT-ATTTT-AGA-ATTTAG-AGAGTATG-ATGAAATTCTAAAGGAATC-TTCGATT-ATTGAG
64 CCTTCATTTTAAGAGATTTAGAAGA-TACGAACGAAATTCTAAAGGAA-CATTCGATTCATTGAG
*
64006720 CG
127 CA
* * * *
64006722 AACGGGAAATCGCAACCCAGCAC-GATAGGGCATGATTCCCGAATTGCCAAACATCGAGTATTAC
1 AACGAGAAATCGCAACCCAGCACAG-TAGGGCACGATTCCCGAATTGCCAAACATCAAGCATTAC
* * *
64006786 CTTCATTTTAAAGAGTTTTTAGAAGATACGAACGAAATTCTAAAGGGACATTCGATTGCTTTGAG
65 CTTCATTTT-AAGAG-ATTTAGAAGATACGAACGAAATTCTAAAGGAACATTCGATT-CATTGAG
64006851 CA
127 CA
* * * * * **
64006853 AACGAGAAATTGCAACCCAGCACATTAGGGCACGATGCCGCGAATTGTCAAATAT--A-CATCGC
1 AACGAGAAATCGCAACCCAGCACAGTAGGGCACGATTCC-CGAATTGCCAAACATCAAGCATTAC
* * * * * *
64006915 CTTCATTTTAA-AGGATTTTTAGAAGACATGAACGAAATTATGAAGGGATATTCGA-TCATTTTG
65 CTTCATTTTAAGA-GA--TTTAGAAGATACGAACGAAATTCTAAAGGAACATTCGATTCA--TTG
64006978 AGCA
125 AGCA
* * * * * *
64006982 AACGGGAAATTGCAACCCA--ACATGTTAGGGCACGATTCCGGAAATTGCCAAATATCAAACCTT
1 AACGAGAAATCGCAACCCAGCACA-G-TAGGGCACGATTCCCG-AATTGCCAAACATCAAGCATT
*
64007045 GCCTTCATTTTAA
63 ACCTTCATTTTAA
64007058 AGAATTTTTA
Statistics
Matches: 271, Mismatches: 41, Indels: 41
0.77 0.12 0.12
Matches are distributed among these distances:
123 23 0.08
124 32 0.12
125 5 0.02
126 3 0.01
127 5 0.02
128 14 0.05
129 120 0.44
130 1 0.00
131 40 0.15
132 28 0.10
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (128 bp):
AACGAGAAATCGCAACCCAGCACAGTAGGGCACGATTCCCGAATTGCCAAACATCAAGCATTACC
TTCATTTTAAGAGATTTAGAAGATACGAACGAAATTCTAAAGGAACATTCGATTCATTGAGCA
Found at i:64006923 original size:129 final size:128
Alignment explanation
Indices: 64006690--64007067 Score: 399
Period size: 129 Copynumber: 2.9 Consensus size: 128
64006680 AGAGTATGAT
* * * *
64006690 GAAATTCTAAAGGAATC-TTCGATTATTGAGCGAACGGGAAATCGCAACCCAGCACGA-TAGGGC
1 GAAATTCTAAAGGGA-CATTCGATTTTTGAGCAAACGGGAAATTGCAACCCAGCAC-ATTAGGGC
* * ** * *
64006753 ATGATTCC-CGAATTGCCAAACATCGAGTATTACCTTCATTTTAAAGAGTTTTTAGAAGATACGA
64 ACGATTCCGCGAATTGCCAAATAT--AACATTGCCTTCATTTTAAAGAGTTTTTAGAAGACACGA
64006817 AC
127 AC
*
64006819 GAAATTCTAAAGGGACATTCGATTGCTTTGAGCAAACGAGAAATTGCAACCCAGCACATTAGGGC
1 GAAATTCTAAAGGGACATTCGATT--TTTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGC
* * * *
64006884 ACGATGCCGCGAATTGTCAAATAT-ACATCGCCTTCATTTTAAAG-GATTTTTAGAAGACATGAA
64 ACGATTCCGCGAATTGCCAAATATAACATTGCCTTCATTTTAAAGAG-TTTTTAGAAGACACGAA
64006947 C
128 C
* * * * **
64006948 GAAATTATGAAGGGATATTCGATCATTTTGAGCAAACGGGAAATTGCAACCCAACATGTTAGGGC
1 GAAATTCTAAAGGGACATTCGAT--TTTTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGC
* *
64007013 ACGATTCCG-GAAATTGCCAAATATCAAACCTTGCCTTCATTTTAAAGAATTTTTA
64 ACGATTCCGCG-AATTGCCAAATAT--AACATTGCCTTCATTTTAAAGAGTTTTTA
64007068 AATGAATATT
Statistics
Matches: 209, Mismatches: 27, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
128 3 0.01
129 128 0.61
130 1 0.00
131 40 0.19
132 37 0.18
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (128 bp):
GAAATTCTAAAGGGACATTCGATTTTTGAGCAAACGGGAAATTGCAACCCAGCACATTAGGGCAC
GATTCCGCGAATTGCCAAATATAACATTGCCTTCATTTTAAAGAGTTTTTAGAAGACACGAAC
Found at i:64008103 original size:33 final size:33
Alignment explanation
Indices: 64008066--64008133 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
64008056 AGGGCTAAAT
64008066 TAATTTTATTATAAATTATAATGGATTGAAGAA
1 TAATTTTATTATAAATTATAATGGATTGAAGAA
64008099 TAATTTTATTATAAATTATAATGGATTGAAGAA
1 TAATTTTATTATAAATTATAATGGATTGAAGAA
64008132 TA
1 TA
64008134 TGCTTACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.43
Consensus pattern (33 bp):
TAATTTTATTATAAATTATAATGGATTGAAGAA
Found at i:64010988 original size:37 final size:37
Alignment explanation
Indices: 64010947--64011048 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
64010937 ACCTCAGACG
* * *
64010947 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64010984 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64011021 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
64011049 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64011254 original size:47 final size:47
Alignment explanation
Indices: 64011167--64011526 Score: 576
Period size: 47 Copynumber: 7.6 Consensus size: 47
64011157 CCCTTCGGGA
* * * * * *
64011167 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64011214 CCTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64011261 CTTATCACATATATACACTTTCACCTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64011308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64011355 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64011402 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64011449 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64011498 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
64011527 TATTCAAATA
Statistics
Matches: 294, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 227 0.77
49 67 0.23
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64011270 original size:22 final size:22
Alignment explanation
Indices: 64011242--64011317 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
64011232 TTTCACATTC
64011242 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
**** ***
64011264 ATCACATATATACACTTTCACCTT
1 ATCACAT-CGGCCA-TTAGGCCTT
64011288 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
64011311 ATCACAT
1 ATCACAT
64011318 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:64016945 original size:13 final size:13
Alignment explanation
Indices: 64016927--64016952 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64016917 ACACATTCGC
64016927 ACTTTTCCATCTT
1 ACTTTTCCATCTT
64016940 ACTTTTCCATCTT
1 ACTTTTCCATCTT
64016953 TCTTAGGGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (13 bp):
ACTTTTCCATCTT
Found at i:64026860 original size:49 final size:50
Alignment explanation
Indices: 64026780--64027025 Score: 325
Period size: 49 Copynumber: 4.9 Consensus size: 50
64026770 AGGTATTGTG
*
64026780 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
64026830 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
64026880 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
64026930 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
64026980 -GGTCGCGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
64027026 GCTTCGGCTA
Statistics
Matches: 170, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 82 0.48
50 49 0.29
51 39 0.23
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:64026917 original size:28 final size:28
Alignment explanation
Indices: 64026885--64026968 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
64026875 AACTTCGATC
64026885 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
64026913 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
64026935 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
64026963 ACGTGT
1 ACGTGT
64026969 ATCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:64031161 original size:46 final size:46
Alignment explanation
Indices: 64031111--64031283 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
64031101 TGGTTGAGCA
64031111 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
64031157 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAATTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
64031202 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
64031250 CCCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64031284 GGGGTGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64031267 original size:93 final size:93
Alignment explanation
Indices: 64031108--64031278 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
64031098 GGATGGTTGA
* *
64031108 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTTGTTGAGT
64031173 TGAGTCCGAGTTCGTGAAATGTAATTAG
66 TGAGTCCGAGTTCGTGAAATGTAATTAG
*
64031201 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTTGTTGAGT
*
64031266 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
64031279 ACTTAGGGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTTGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAATTAG
Found at i:64034869 original size:47 final size:47
Alignment explanation
Indices: 64034815--64035055 Score: 392
Period size: 47 Copynumber: 5.1 Consensus size: 47
64034805 TTAGGATTTT
** * * *
64034815 ATGTGATGAATGTGAATGTGTATACATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
64034862 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
64034909 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
64034956 ATGTGATGAATGTGAACATGCATATATGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
64035003 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
64035050 ATGTGA
1 ATGTGA
64035056 AATATGTATG
Statistics
Matches: 184, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 184 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:64034915 original size:22 final size:22
Alignment explanation
Indices: 64034844--64034962 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
64034834 GTATACATGA
64034844 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
64034866 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
64034891 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
64034913 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
64034938 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
64034960 GAT
1 GAT
64034963 GAATGTGAAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:64035009 original size:22 final size:22
Alignment explanation
Indices: 64034844--64035009 Score: 74
Period size: 24 Copynumber: 7.1 Consensus size: 22
64034834 GTATACATGA
*
64034844 GATAAGGCCGAATGGCCAATGT
1 GATAATGCCGAATGGCCAATGT
* *
64034866 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AATGCCG-A-ATGGC-CA-ATGT
*
64034891 GATAAGGCCGAATGGCCAATGT
1 GATAATGCCGAATGGCCAATGT
* *
64034913 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AATGCCG-A-ATGGC-CA-ATGT
*
64034938 GATAAGGCCGAATGGCCAATGT
1 GATAATGCCGAATGGCCAATGT
* *
64034960 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AATGCCG-A-ATGGC-CA-ATGT
64034985 GATAATGCCGAATGGCCAATGT
1 GATAATGCCGAATGGCCAATGT
64035007 GAT
1 GAT
64035010 GAATATGAAC
Statistics
Matches: 106, Mismatches: 17, Indels: 42
0.64 0.10 0.25
Matches are distributed among these distances:
22 27 0.25
23 27 0.25
24 28 0.26
25 24 0.23
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
GATAATGCCGAATGGCCAATGT
Found at i:64035118 original size:50 final size:48
Alignment explanation
Indices: 64035025--64035209 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
64035015 TGAACATGCA
64035025 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
64035073 CATATGTGGTAAAGCCGAATGGTCAAAT-TGAAACATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-CTAATGTG-AA-ATATGTATGAGATATG
*
64035123 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
64035171 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
64035210 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
48 77 0.61
49 11 0.09
50 38 0.30
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:64037158 original size:15 final size:15
Alignment explanation
Indices: 64037120--64037161 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
64037110 TATAGTATCG
* *
64037120 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
64037135 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
64037150 TATCTTGGATTT
1 TATCTTGGATTT
64037162 TTTTATTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.12, C:0.14, G:0.17, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:64039624 original size:46 final size:46
Alignment explanation
Indices: 64039574--64039742 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
64039564 TGAGCATACG
64039574 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
* * * * * *
64039620 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAATTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCA
* *
64039667 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
** *
64039713 GGCTCGTTGATTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
64039743 GGGGCGGGTT
Statistics
Matches: 97, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 53 0.55
47 27 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
Found at i:64039736 original size:93 final size:93
Alignment explanation
Indices: 64039567--64039737 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
64039557 GGATGGTTGA
* *
64039567 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
*
64039632 TGAGTCTGAGTTCGTGAAATGTAATTAG
66 TGAGTCCGAGTTCGTGAAATGTAATTAG
* ** *
64039660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAGGCTCGTTGATT
1 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
64039725 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64039738 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAATTAG
Found at i:64043031 original size:27 final size:27
Alignment explanation
Indices: 64043001--64043173 Score: 193
Period size: 27 Copynumber: 6.4 Consensus size: 27
64042991 CCCTAAAATA
* *
64043001 GGTAAAATGATCGTAATACCCCTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
64043028 GGTAAAATGACGGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
64043055 AGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
64043082 AGTAAAATGAACGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
64043109 AGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * *
64043136 GGTAAAATGTCTGTAATACCTCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
64043163 GGTAAAATGAC
1 GGTAAAATGAC
64043174 GATTAAGCCC
Statistics
Matches: 123, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:64043141 original size:81 final size:81
Alignment explanation
Indices: 64043001--64043172 Score: 229
Period size: 81 Copynumber: 2.1 Consensus size: 81
64042991 CCCTAAAATA
* * * ** *
64043001 GGTAAAATGATCGTAATACCCCTTTAGGGTAAAATGACGGTAATGCCCTTGTAGAGTAAAATGAC
1 GGTAAAATGAACGTAATACCCCTATAGAGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAC
*
64043066 CGTAATGCCCCTGTA-
66 CGTAATACCCCTGTAT
* *
64043081 GAGTAAAATGAACGTAATACCCCTATAGAGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGT
1 G-GTAAAATGAACGTAATACCCCTATAGAGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGA
* *
64043146 CTGTAATACCTCTGTAT
65 CCGTAATACCCCTGTAT
64043163 GGTAAAATGA
1 GGTAAAATGA
64043173 CGATTAAGCC
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 77 0.97
82 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
GGTAAAATGAACGTAATACCCCTATAGAGTAAAATGACCATAATGCCCCTGTAGAGTAAAATGAC
CGTAATACCCCTGTAT
Found at i:64069662 original size:79 final size:81
Alignment explanation
Indices: 64069494--64069678 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
64069484 CCTACTCGTT
* *
64069494 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
64069558 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* ** *
64069575 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
* *
64069637 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
64069654 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
64069679 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCAC
Found at i:64069678 original size:40 final size:40
Alignment explanation
Indices: 64069494--64069678 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
64069484 CCTACTCGTT
* *
64069494 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64069534 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
64069574 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
64069613 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64069654 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64069679 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Done.