Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 193 of 320
Found at i:64076682 original size:42 final size:42
Alignment explanation
Indices: 64076633--64076972 Score: 448
Period size: 42 Copynumber: 8.1 Consensus size: 42
64076623 TGAACGTTGA
64076633 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
**
64076675 CATCGTATCTGATTTCGTGTAAGATAATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
64076717 CATCGTATTTGATTTTGTGTAAGACCATGTCTAGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
64076759 CATCGTATCGGATTTTGTGTAATACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * *
64076801 CATCGTATCTAATTTTGTGTAAGACCATGTTTGGGACATCAG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
*
64076843 CATCTTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * **
64076885 CATCATATCTGATTTCGTGTAAGACCATGTCTTGGATAGAGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * * *
64076927 CATCG-ATACTGAATTACATGTAAGACCATATCTGAGACGTCGG
1 CATCGTAT-CTG-ATTTCGTGTAAGACCATGTCTGGGACATCGG
64076970 CAT
1 CAT
64076973 TGTACCCATT
Statistics
Matches: 260, Mismatches: 36, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
41 2 0.01
42 233 0.90
43 25 0.10
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
Found at i:64078469 original size:20 final size:21
Alignment explanation
Indices: 64078431--64078469 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
64078421 AATGGCCATG
*
64078431 GATGATATAAGAGTGACTTAA
1 GATGATATAAGAGTCACTTAA
*
64078452 GATGAT-TACGAGTCACTT
1 GATGATATAAGAGTCACTT
64078470 GTTGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (21 bp):
GATGATATAAGAGTCACTTAA
Found at i:64079012 original size:29 final size:28
Alignment explanation
Indices: 64078958--64079051 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
64078948 ATTGCATGAC
*
64078958 TATGAATGTGATTGGGCCTAAGGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
64078986 TTTGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
* * *
64079015 TATGAAAGAGATTGGGCCTAGTGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
64079043 TATGCATGT
1 TATGAATGT
64079052 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 32 0.57
29 24 0.43
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:64083390 original size:16 final size:16
Alignment explanation
Indices: 64083369--64083400 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64083359 TCGGCAAATC
*
64083369 TCGAAATGTCGAAAAG
1 TCGAAATGCCGAAAAG
64083385 TCGAAATGCCGAAAAG
1 TCGAAATGCCGAAAAG
64083401 CCAAAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.16
Consensus pattern (16 bp):
TCGAAATGCCGAAAAG
Found at i:64091049 original size:42 final size:42
Alignment explanation
Indices: 64091000--64091495 Score: 688
Period size: 42 Copynumber: 11.8 Consensus size: 42
64090990 AGAACATTGA
64091000 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
**
64091042 CATCGTATCTGATTTCGTGTAAGATAATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
64091084 CATCGTATTTGATTTTGTGTAAGACCATGTCTAGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
*
64091126 CATTGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
64091168 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* *
64091210 CATCGTATTTGATTTCGTGTAAGACCATGTCTGGGACATTGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
** * *
64091252 CATCGTATCTGATTTTATGTAAGACCATGTCTAGGACATCGC
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* *
64091294 CATCGTATCTGATTTCATGTAAGACCATGTCTGGGACGTCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * * * *
64091336 CATCGTATCTAATTTCGTCTAAGAGCTTGTCTGCGACATCAG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
64091378 CATCATATCTGTTTTGGTGTAAGACCATGTCTGGGACATCGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * * **
64091420 CATTGTATCTGATTTCGTGTAAGACCCTGTTTGGGACAGAGG
1 CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
* * *
64091462 CATCG-ATACTGAATTACATGTAAGACCACGTCTG
1 CATCGTAT-CTG-ATTTCGTGTAAGACCATGTCTG
64091496 AGATGTAGGC
Statistics
Matches: 397, Mismatches: 55, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
41 2 0.01
42 378 0.95
43 17 0.04
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (42 bp):
CATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACATCGG
Found at i:64092595 original size:52 final size:52
Alignment explanation
Indices: 64092512--64092623 Score: 179
Period size: 52 Copynumber: 2.2 Consensus size: 52
64092502 GCGTGTCATA
*
64092512 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCTATGTTTGT
1 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
* * *
64092564 TGGCTGTGGGCTTAAGTCAGTAGCCATCTAAGTATCACACGGCCGTGTTTGT
1 TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
*
64092616 TGGTCGTG
1 TGGCCGTG
64092624 TGTAAAAGTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (52 bp):
TGGCCGTGGGCTTAAGTCAGTAGCCAGCTAAGTATCACACGGCCATGTTTGT
Found at i:64098239 original size:46 final size:45
Alignment explanation
Indices: 64098172--64098346 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
64098162 TGTAACCCGC
64098172 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
64098218 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
64098264 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
64098311 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
64098347 ATGCTCAACT
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:64098292 original size:93 final size:93
Alignment explanation
Indices: 64098180--64098350 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
64098170 GCCCATAAGT
* *
64098180 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64098245 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
64098273 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
64098338 TGAGTTCGGATGC
66 CGAGCTCGGATGC
64098351 TCAACTATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:64109835 original size:48 final size:48
Alignment explanation
Indices: 64109760--64110124 Score: 389
Period size: 48 Copynumber: 7.6 Consensus size: 48
64109750 AGGGTAAATT
* * * *
64109760 GCCGATGCCATATCCCAGACATCGTCTTACACTGGCTCACAT-GTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GAG
* ** * * * *
64109808 GCCGATACCATGTCCCAGACATGGTCTTACACTACCTCTCGT-CTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GAG
* * * * * *
64109856 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GAG
* * * *
64109904 GCTGATGCCATGTCCCAGACGTGGTCTTACACTGACTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
** *
64109952 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAATCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
* * *
64110000 GCCGATGCCAT-TCCTAGACATGGTCTTACATTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
64110047 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATG-AG
* * *
64110095 GCCAAAGCCATGTCCCAAACATGGTCTTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
64110125 GCTAGCACAC
Statistics
Matches: 273, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
47 43 0.16
48 228 0.84
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAG
Found at i:64127339 original size:48 final size:48
Alignment explanation
Indices: 64127220--64127601 Score: 245
Period size: 48 Copynumber: 8.0 Consensus size: 48
64127210 ATGGTAAATT
* * *
64127220 GCCGATGCCATGTCCCAGGCATGGTCTTACATTGGC-T-C-TCAT-AATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATACAT-ATCAA-G
** * *
64127266 TGGTGATGCCATGTCCTAGACATGGTCTTACACTAGCATACATATCAAC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAG
* * *
64127315 ACCAATGCCATGTCCCAGATATGGTCTTACACTTA-C-T-C-TCAT-AATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC-TAGCATACAT-ATCAA-G
* * *
64127361 TGGCTAGTGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAT
1 -GCCGA-TGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAG
*** * * * **
64127411 GCCGATGCCATGTTTTAGACATGGTCCTACACTGGC-TCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACAT-ATCAAG
* * * * *
64127459 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGAACACATACCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAG
* *
64127507 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCAT-AATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATACAT-ATCAA-G
* * * *
64127553 TGGCAAGTGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAA
1 -GCCGA-TGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAA
64127602 CCAATTGTCA
Statistics
Matches: 253, Mismatches: 56, Indels: 48
0.71 0.16 0.13
Matches are distributed among these distances:
45 6 0.02
46 5 0.02
47 39 0.15
48 177 0.70
49 11 0.04
50 9 0.04
51 6 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATACATATCAAG
Found at i:64127407 original size:96 final size:97
Alignment explanation
Indices: 64127221--64127602 Score: 531
Period size: 96 Copynumber: 4.0 Consensus size: 97
64127211 TGGTAAATTG
* * *
64127221 CCGATGCCATGTCCCAGGCATGGTCTTACATTGGCTCTCATAATGTGG-T-GATGCCATGTCCTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAGATGCCATGTCCCA
*
64127284 GACATGGTCTTACACTAGCATACATATCAACA
66 GACATGGTCTTACACTAGCACACATATCAACA
* * **
64127316 CCAATGCCATGTCCCAGATATGGTCTTACACTTACTCTCATAATGTGGCTAG-TGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAGATGCCATGTCCCA
* **
64127380 GACATGGTCTTACACTAGCATACATATCAATG
66 GACATGGTCTTACACTAGCACACATATCAACA
*** * *
64127412 CCGATGCCATGTTTTAGACATGGTCCTACACTGGCTCTCATAATGTGGC-CGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAGATGCCATGTCCCA
* * * *
64127476 AACATGGTCTTACACTAGAACACATACCAATA
66 GACATGGTCTTACACTAGCACACATATCAACA
*
64127508 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCAAG-TGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAGATGCCATGTCCCA
*
64127572 GACATAGTCTTACACTAGCACACATATCAAC
66 GACATGGTCTTACACTAGCACACATATCAAC
64127603 CAATTGTCAT
Statistics
Matches: 250, Mismatches: 33, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
95 43 0.17
96 205 0.82
97 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (97 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAGATGCCATGTCCCA
GACATGGTCTTACACTAGCACACATATCAACA
Found at i:64127564 original size:144 final size:142
Alignment explanation
Indices: 64127221--64127602 Score: 355
Period size: 144 Copynumber: 2.7 Consensus size: 142
64127211 TGGTAAATTG
* * *
64127221 CCGATGCCATGTCCCAGGCATGGTCTTACATTGGCTCTCATAATGTGGTGATGCCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCGATGCCATGTCCTAGA
* * * *
64127286 CATGGTCTTACACTAGCATACATATCAACACCAATGCCATGTCCCAGATATGGTCTTACACTTAC
66 CATGGTCCTACACTAGCATACATATCAACACCAATGCCATGTCCCAAACATGGTCTTACACTTAA
* * * *
64127351 TCTCATAATGTG
131 ACACATAATATA
* * * * *
64127363 GCTAGTGCCATGTCCCAGACATGGTCTTACACTAGCATACAT-ATCAA--TGCCGATGCCATGTT
1 CCGA-TGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCAT-AATGTGGCGATGCCATGTC
* * * **** *
64127425 TTAGACATGGTCCTACACTGGC-TCTCATAAT-GTGGCCGATGCCATGTCCCAAACATGGTCTTA
61 CTAGACATGGTCCTACACTAGCAT-ACAT-ATCAACACCAATGCCATGTCCCAAACATGGTCTTA
64127488 CAC-TAGAACACATACCA-ATA
124 CACTTA-AACACATA--ATATA
* *
64127508 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCAAGTGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCGA-TGCCATGTCCTAG
* * *
64127573 ACATAGTCTTACACTAGCACACATATCAAC
65 ACATGGTCCTACACTAGCATACATATCAAC
64127603 CAATTGTCAT
Statistics
Matches: 184, Mismatches: 40, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
141 3 0.02
142 5 0.03
143 38 0.21
144 126 0.68
145 8 0.04
146 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (142 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCGATGCCATGTCCTAGA
CATGGTCCTACACTAGCATACATATCAACACCAATGCCATGTCCCAAACATGGTCTTACACTTAA
ACACATAATATA
Found at i:64136678 original size:47 final size:47
Alignment explanation
Indices: 64136623--64136907 Score: 401
Period size: 47 Copynumber: 6.1 Consensus size: 47
64136613 TTAGGATTTT
** * * * * *
64136623 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGTCGAATGACAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
64136670 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
64136717 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
64136764 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
64136811 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64136858 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
64136905 ATG
1 ATG
64136908 CGAAATGTGT
Statistics
Matches: 222, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 219 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:64136770 original size:22 final size:22
Alignment explanation
Indices: 64136743--64136864 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
64136733 CATGCATATG
64136743 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
64136765 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
64136788 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* * *
64136812 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
64136837 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
64136859 TGTGAT
1 TGTGAT
64136865 GAACGTGGAA
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 23 0.31
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:64136937 original size:46 final size:46
Alignment explanation
Indices: 64136881--64137017 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
64136871 GGAAGTGTAT
64136881 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
64136927 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGACGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
64136973 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
64137018 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:64138806 original size:29 final size:29
Alignment explanation
Indices: 64138762--64138857 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
64138752 GAAAGCATCA
* *
64138762 ATATGAATGTGGTTTGGGCATAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
64138791 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
64138820 ATATGGATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
64138848 ATATGCATGT
1 ATATGAATGT
64138858 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
28 22 0.38
29 36 0.62
ACGTcount: A:0.24, C:0.11, G:0.33, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:64156749 original size:48 final size:47
Alignment explanation
Indices: 64156580--64156758 Score: 143
Period size: 48 Copynumber: 3.9 Consensus size: 47
64156570 GGGTTAATGA
* * * *
64156580 GATCCCGTATAAGACCATATCTGGGATATAGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAT-GGT
* ** * * *
64156628 GTTATCATGTAAGACCATGTTTGGGATATGGCGTT-G-AT--AT-GT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATGGT
* * * * *
64156670 TATCCCATGTAAGACCATGTTTGGAACATGGCATTGGCATCGAGTGGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGA-TGGT
* * *
64156718 GATCCCATGTAAGACCTTATCTGGGATATGGCGTTAGCATC
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
64156759 TTATTATGTG
Statistics
Matches: 101, Mismatches: 24, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
42 30 0.30
43 1 0.01
44 4 0.04
46 3 0.03
47 2 0.02
48 61 0.60
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATGGT
Found at i:64159233 original size:42 final size:41
Alignment explanation
Indices: 64159182--64159368 Score: 144
Period size: 42 Copynumber: 4.4 Consensus size: 41
64159172 ATTTACGTAG
*
64159182 AAGACCATGTTTGGGACATCGGCATCGTATCTGATTTCGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-TGATTTCGTGT
* * * * *
64159224 AAGACCATGTCTGGGACA-CAG-ACCTTGATTAAGATTTATGTAT
1 AAGACCATGTCTGGGACATCGGCATCGT-ATT--GATTT-CGTGT
* *
64159267 AAGACCATGTCTGAGACATCGGCATCGTATCTAATTTCGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-TGATTTCGTGT
* * ** * *
64159309 AAGACCTTGTCTAGGACAGGGGCATCGATATTGAGTTACATGT
1 AAGACCATGTCTGGGACATCGGCATCG-TATTGA-TTTCGTGT
* *
64159352 AAGACCACGTCTAGGAC
1 AAGACCATGTCTGGGAC
64159369 GTTGGCATTG
Statistics
Matches: 113, Mismatches: 23, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
40 4 0.04
41 4 0.04
42 49 0.43
43 48 0.42
44 4 0.04
45 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
AAGACCATGTCTGGGACATCGGCATCGTATTGATTTCGTGT
Found at i:64159276 original size:85 final size:85
Alignment explanation
Indices: 64159133--64159326 Score: 280
Period size: 85 Copynumber: 2.3 Consensus size: 85
64159123 GTCTGAGACA
* * * * * *
64159133 TCGTGTAAAACCGTGCCTAGGACACAGACCTCGATTGAGATTTACGTAGAAGACCATGTTTGGGA
1 TCGTGTAAGACCATGTCTAGGACACAGACCTCGATTAAGATTTACGTAGAAGACCATGTCTGAGA
*
64159198 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTAATT
* * * *
64159218 TCGTGTAAGACCATGTCTGGGACACAGACCTTGATTAAGATTTATGTATAAGACCATGTCTGAGA
1 TCGTGTAAGACCATGTCTAGGACACAGACCTCGATTAAGATTTACGTAGAAGACCATGTCTGAGA
64159283 CATCGGCATCGTATCTAATT
66 CATCGGCATCGTATCTAATT
*
64159303 TCGTGTAAGACCTTGTCTAGGACA
1 TCGTGTAAGACCATGTCTAGGACA
64159327 GGGGCATCGA
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTAGGACACAGACCTCGATTAAGATTTACGTAGAAGACCATGTCTGAGA
CATCGGCATCGTATCTAATT
Found at i:64159355 original size:85 final size:85
Alignment explanation
Indices: 64159133--64159363 Score: 230
Period size: 85 Copynumber: 2.7 Consensus size: 85
64159123 GTCTGAGACA
* * * * * * * * * *
64159133 TCGTGTAAAACCGTGCCTAGGACACAGACCTCGATTGAGATTTACGTAGAAGACCATGTTTGGGA
1 TCGTGTAAGACCATGTCTAGGACACAGACATCGATTAAGAGTTACATATAAGACCATGTCTGAGA
*
64159198 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTAATT
* * * * **
64159218 TCGTGTAAGACCATGTCTGGGACACAGACCTTGATTAAGATTTATGTATAAGACCATGTCTGAGA
1 TCGTGTAAGACCATGTCTAGGACACAGACATCGATTAAGAGTTACATATAAGACCATGTCTGAGA
64159283 CATCGGCATCGTATCTAATT
66 CATCGGCATCGTATCTAATT
* ** * * * *
64159303 TCGTGTAAGACCTTGTCTAGGACAGGGGCATCGA-TATTGAGTTACATGTAAGACCACGTCT
1 TCGTGTAAGACCATGTCTAGGACACAGACATCGATTA-AGAGTTACATATAAGACCATGTCT
64159364 AGGACGTTGG
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
84 2 0.02
85 119 0.98
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTAGGACACAGACATCGATTAAGAGTTACATATAAGACCATGTCTGAGA
CATCGGCATCGTATCTAATT
Found at i:64163332 original size:40 final size:40
Alignment explanation
Indices: 64163186--64163322 Score: 193
Period size: 40 Copynumber: 3.4 Consensus size: 40
64163176 TGTTATACTC
* *
64163186 TCTGTTTGGCATGTTTCGCTTGGATCAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAGCTCTTATGAGCT
* ** *
64163226 TCTATTTGATGTGTTTCGGTTGGATCAGCTATTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAGCTCTTATGAGCT
* *
64163266 TCTGTTTGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAGCTCTTATGAGCT
*
64163306 TTTGTTTGGCGTGTTTC
1 TCTGTTTGGCGTGTTTC
64163323 AATTGGATTA
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.12, C:0.15, G:0.27, T:0.47
Consensus pattern (40 bp):
TCTGTTTGGCGTGTTTCGGTTGGATCAGCTCTTATGAGCT
Found at i:64169450 original size:24 final size:24
Alignment explanation
Indices: 64169394--64169554 Score: 94
Period size: 24 Copynumber: 6.6 Consensus size: 24
64169384 AATGACATTG
* *
64169394 GCACTAAGTGTGCGGATTTTGAATG
1 GCACTATGTGTGCGGA-TTTGAATA
*
64169419 GCACTATGTGTGCGGAATTGAATA
1 GCACTATGTGTGCGGATTTGAATA
* *
64169443 GCATTATGTGTGCTGATTTGAAT-
1 GCACTATGTGTGCGGATTTGAATA
* * * * *
64169466 GTCAATACGAGTGTGTGGATTTCTAA-G
1 G-CACTA--TGTGTGCGGATTT-GAATA
* * * *
64169493 GCACTATGTTTGCAGG-TTAGCATG
1 GCACTATGTGTGC-GGATTTGAATA
* * *
64169517 GCACTAAGTGTACGGATTTCAATA
1 GCACTATGTGTGCGGATTTGAATA
64169541 GCACTATGTGTGCG
1 GCACTATGTGTGCG
64169555 AAATCGATTG
Statistics
Matches: 101, Mismatches: 27, Indels: 17
0.70 0.19 0.12
Matches are distributed among these distances:
23 4 0.04
24 63 0.62
25 17 0.17
26 14 0.14
27 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGGATTTGAATA
Found at i:64171557 original size:18 final size:18
Alignment explanation
Indices: 64171534--64171568 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
64171524 TGTTTGTGTG
64171534 CTTAATTTG-ATAAAAGGA
1 CTTAA-TTGCATAAAAGGA
64171552 CTTAATTGCATAAAAGG
1 CTTAATTGCATAAAAGG
64171569 TAAAAGTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (18 bp):
CTTAATTGCATAAAAGGA
Found at i:64176007 original size:18 final size:18
Alignment explanation
Indices: 64175984--64176019 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64175974 TCTTAAAATG
64175984 ATATACATACAATTCCTT
1 ATATACATACAATTCCTT
64176002 ATATACATACAATTCCTT
1 ATATACATACAATTCCTT
64176020 GGTTACCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATACATACAATTCCTT
Found at i:64180998 original size:49 final size:49
Alignment explanation
Indices: 64180939--64181163 Score: 254
Period size: 49 Copynumber: 4.5 Consensus size: 49
64180929 CTGGTACGCA
* * *
64180939 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
*
64180988 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
** * *
64181037 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCAG-TACACG
* * * ** * *
64181087 TAGTATCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCAGTACACG
* *
64181138 TAGCAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
64181164 TGCGACCTCA
Statistics
Matches: 150, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
49 80 0.53
50 39 0.26
51 29 0.19
52 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
Found at i:64181116 original size:99 final size:100
Alignment explanation
Indices: 64180926--64181170 Score: 289
Period size: 98 Copynumber: 2.5 Consensus size: 100
64180916 TAGCCAAAGC
* * * * **
64180926 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCAGTACACGTAG
64180991 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * *
64181024 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTGATACATGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCAG-TACACGT
* *
64181088 AGTATCCTGCACTTAGTACTACACACGTGATCACAGT
64 AGTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * * * *
64181125 TTTCGGGTACGCATAGCAGCTTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
64181171 TCACAATAGA
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
98 42 0.34
99 39 0.32
100 1 0.01
101 41 0.33
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCAGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:64183159 original size:164 final size:164
Alignment explanation
Indices: 64182888--64183215 Score: 595
Period size: 164 Copynumber: 2.0 Consensus size: 164
64182878 CTGGAGTAAT
*
64182888 TGCACACAGGTGTGTCACACGGGCGTGTCCCTACCGAGCCCAAGTATAGCCCTATTCGAAAAAGG
1 TGCACACAGGTGTGTCACACGGGCATGTCCCTACCGAGCCCAAGTATAGCCCTATTCGAAAAAGG
*
64182953 CCAATTTTAAGGGCTCTTAGGCATTCTAAAGCCTATTTAAACACTTGAGGAGGCACTTAGGAAGG
66 CCAATTTTAAGGGCTCTTAGGCATTCTAAAGCCTATTTAAACACCTGAGGAGGCACTTAGGAAGG
64183018 GAGACGCAGAGTAAGAGGCAAGGAATTACTCAAG
131 GAGACGCAGAGTAAGAGGCAAGGAATTACTCAAG
* *
64183052 TGCACACGGGTGTGTCACATGGGCATGTCCCTACCGAGCCCAAGTATAGCCCTATTC-AGAAAAG
1 TGCACACAGGTGTGTCACACGGGCATGTCCCTACCGAGCCCAAGTATAGCCCTATTCGA-AAAAG
64183116 GCCAATTTTAAGGGCTCTTAGGCATTCTAAAGCCTATTTAAACACCTGAGGAGGCACTTAGGAAG
65 GCCAATTTTAAGGGCTCTTAGGCATTCTAAAGCCTATTTAAACACCTGAGGAGGCACTTAGGAAG
*
64183181 GGAGATGCAGAGTAAGAGGCAAGGAATTACTCAAG
130 GGAGACGCAGAGTAAGAGGCAAGGAATTACTCAAG
64183216 GGAAGTCGAT
Statistics
Matches: 158, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
163 1 0.01
164 157 0.99
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (164 bp):
TGCACACAGGTGTGTCACACGGGCATGTCCCTACCGAGCCCAAGTATAGCCCTATTCGAAAAAGG
CCAATTTTAAGGGCTCTTAGGCATTCTAAAGCCTATTTAAACACCTGAGGAGGCACTTAGGAAGG
GAGACGCAGAGTAAGAGGCAAGGAATTACTCAAG
Found at i:64189613 original size:18 final size:17
Alignment explanation
Indices: 64189587--64189621 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
64189577 CACTATTAGA
64189587 ATGAATTTTAATTGATAT
1 ATGAATTTT-ATTGATAT
*
64189605 ATGATTTTTATTGATAT
1 ATGAATTTTATTGATAT
64189622 GTCTTGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (17 bp):
ATGAATTTTATTGATAT
Found at i:64196690 original size:40 final size:40
Alignment explanation
Indices: 64196607--64196869 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
64196597 TTCAATGCTG
* * * * * *
64196607 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
64196647 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
64196687 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTTAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
64196727 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
64196767 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
64196807 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
64196846 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
64196870 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:64196889 original size:79 final size:80
Alignment explanation
Indices: 64196646--64196902 Score: 243
Period size: 80 Copynumber: 3.2 Consensus size: 80
64196636 AAGTGAATAT
* * * * * *
64196646 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * * *
64196710 TCGTGCGAGTTA-TTTA
65 TCGAACGAG-GAGCTAA
* * *
64196726 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
64196791 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
64196806 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
64196870 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
64196885 ATCC-GGTTAAATCCCGAA
1 ATCCGGGTTAAGTCCCGAA
64196903 CAGGTGGTAA
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 12 0.08
79 48 0.31
80 93 0.61
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:64201000 original size:40 final size:40
Alignment explanation
Indices: 64200970--64201179 Score: 307
Period size: 40 Copynumber: 5.3 Consensus size: 40
64200960 GAATTAAGAT
* * * *
64200970 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
64201010 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
64201050 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
64201090 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * *
64201130 CCGAAGGCATT-GTGTGAGTTACTAAAAT-CGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGTC
64201169 CCGAAGGCATT
1 CCGAAGGCATT
64201180 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 29 0.18
40 130 0.82
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:64201015 original size:80 final size:80
Alignment explanation
Indices: 64200917--64201179 Score: 239
Period size: 80 Copynumber: 3.3 Consensus size: 80
64200907 TTCAATGCTG
* * * *
64200917 TCCGGGCTAAGTCCCGAAGAC-TTTGTGCTAAGTGAATATATCCGAATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGACATTCGTGC-AAGTGAATAAATCCGAATTAAG-TCCCGAAGGCAT
*
64200980 TTGTGCGAGATACTAAA
64 TCGTGCGAGATACTAAA
* * * * **
64200997 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGACATTCGTGCAAGTGAATAAATCCGAATTAAGTCCCGAAGGCATTC
* *
64201062 GTGCGAGTTATTAAA
66 GTGCGAGATACTAAA
* * * ** *
64201077 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG-TTAAATCCGGGTTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGACATTCGTGCAAG-TGAATAAATCCGAATTAAGTCCCGAAGGCATT
* *
64201141 -GTGTGAGTTACTAAAA
65 CGTGCGAGATACT-AAA
* * *
64201157 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGACATT
64201180 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
79 31 0.19
80 122 0.76
81 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGACATTCGTGCAAGTGAATAAATCCGAATTAAGTCCCGAAGGCATTC
GTGCGAGATACTAAA
Found at i:64217446 original size:93 final size:93
Alignment explanation
Indices: 64217334--64217504 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
64217324 GCCCCTAAGT
* * *
64217334 GAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64217398 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
64217427 GAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATCCGTAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64217492 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64217505 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64217498 original size:46 final size:46
Alignment explanation
Indices: 64217327--64217499 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
64217317 GTAACCCGCC
* * *
64217327 CCTAAGTGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
* *
64217372 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-A-TTCGCAT
* * *
64217422 -CTCA-CGAACTCGGACTCAACTCAACAAGTTCGA-ACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
*
64217465 CCGTAAGTGAACTTGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
64217500 GATGCTCAAC
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.54
47 25 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:64217520 original size:46 final size:46
Alignment explanation
Indices: 64217327--64217520 Score: 150
Period size: 46 Copynumber: 4.2 Consensus size: 46
64217317 GTAACCCGCC
* * * *
64217327 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCAACAT
64217372 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * * *** *
64217422 -CTCA-CGAACTCGGACTCAACTCAACAAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
*
64217465 CCGTAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
64217513 CCT-AGTGA
1 CCTAAGTGA
64217521 CATGTCACTT
Statistics
Matches: 115, Mismatches: 21, Indels: 25
0.71 0.13 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 7 0.06
46 64 0.56
47 28 0.24
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:64230474 original size:46 final size:45
Alignment explanation
Indices: 64230407--64230572 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 45
64230397 CGCCCCTAAG
* *
64230407 TGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCATAAA
* * * **
64230453 TGAACTCAGACTCAACTCAACGAGTTCAGATGGC-TAGT-TACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTC-G--GGCTTCGTATCCAT-AAA
** * * *
64230500 TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGTATCCATAAA
64230546 TGAACTCGGACTCAACTCAACGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
64230573 AGATGCTCAA
Statistics
Matches: 96, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
46 58 0.60
47 34 0.35
49 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGTATCCATAAA
Found at i:64230523 original size:93 final size:93
Alignment explanation
Indices: 64230407--64230577 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
64230397 CGCCCCTAAG
* ** * *
64230407 TGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAATGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCAGACTCAACTCA
64230472 ACGAGTTCAGATGGCTAGTTACATCTCA
66 ACGAGTTCAGATGGCTAGTTACATCTCA
* * * *
64230500 TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCAGACTCAACTCA
64230565 ACGAGTTCAGATG
66 ACGAGTTCAGATG
64230578 CTCAACCATC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCAGACTCAACTCA
ACGAGTTCAGATGGCTAGTTACATCTCA
Found at i:64230594 original size:46 final size:46
Alignment explanation
Indices: 64230401--64230594 Score: 134
Period size: 46 Copynumber: 4.2 Consensus size: 46
64230391 GTAACCCGCC
* * * ** * **
64230401 CCTAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTC-GTAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACAT
* *
64230446 CCATAAATGAACTCAGACTCAACTCAACGAGTTCAGATGGCT-AGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCAGAT-GCTCA---ACAT
* * *
64230496 -CTCA-TGAACTCGGACTCAACTCAACGAGTTC-GA-ACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGC--TCAACAT
64230539 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAA-CAT
64230587 CCT-AGTGA
1 CCTAAGTGA
64230595 CATGTCACTT
Statistics
Matches: 116, Mismatches: 17, Indels: 31
0.71 0.10 0.19
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 4 0.03
46 65 0.56
47 31 0.27
48 8 0.07
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACAT
Found at i:64245211 original size:4 final size:4
Alignment explanation
Indices: 64245204--64245321 Score: 200
Period size: 4 Copynumber: 29.5 Consensus size: 4
64245194 GCATGCATGC
*
64245204 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATAT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
64245252 ATGC ATGT ATGT ATGT ATGT ATGC ATGT ATGT ATGT GTGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
64245300 ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT AT
64245322 ATTTGATTTC
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 106 1.00
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:64257999 original size:90 final size:90
Alignment explanation
Indices: 64257882--64258071 Score: 310
Period size: 90 Copynumber: 2.1 Consensus size: 90
64257872 TTTTTCAAGT
* * *
64257882 TGATTTCTTAATTATTTTATGACAATTCACTCCTATATTCTTATTTTGGTCAACCATACGTCTTA
1 TGATTTCTTAATCATTCTATGACAATTCACTCATATATTCTTATTTTGGTCAACCATACGTCTTA
*
64257947 GAATGCCCGAAAAACCTATAAATAG
66 GAATGCCCGAAAAACCTATAAATAA
* *
64257972 TGATTTCTTAATCATTCTATGACAATTCACTCATATCTTCTTATTTTGGTCAACCATATGTCTTA
1 TGATTTCTTAATCATTCTATGACAATTCACTCATATATTCTTATTTTGGTCAACCATACGTCTTA
*
64258037 GAATGCCGGAAAAACCTATAAATAA
66 GAATGCCCGAAAAACCTATAAATAA
64258062 TGATTT-TTAA
1 TGATTTCTTAA
64258072 AGTTGGGTGT
Statistics
Matches: 93, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 4 0.04
90 89 0.96
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (90 bp):
TGATTTCTTAATCATTCTATGACAATTCACTCATATATTCTTATTTTGGTCAACCATACGTCTTA
GAATGCCCGAAAAACCTATAAATAA
Found at i:64259611 original size:19 final size:19
Alignment explanation
Indices: 64259587--64259628 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
64259577 GATTAAACTT
64259587 TAATTAATT-ATAATTAAC
1 TAATTAATTAATAATTAAC
64259605 ATAATTAATTAATAATTAAC
1 -TAATTAATTAATAATTAAC
64259625 TAAT
1 TAAT
64259629 GTTAACCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATTAATTAATAATTAAC
Found at i:64260046 original size:4 final size:4
Alignment explanation
Indices: 64260045--64260282 Score: 413
Period size: 4 Copynumber: 59.5 Consensus size: 4
64260035 ATATGCATGC
* * *
64260045 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGC ATGC
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
64260093 ATGT ATGT ATGC ATGC ATGT ATAT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
64260141 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
64260189 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATAT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
64260237 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
64260283 ATTTGATTTC
Statistics
Matches: 226, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 226 1.00
ACGTcount: A:0.26, C:0.02, G:0.24, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:64261441 original size:14 final size:14
Alignment explanation
Indices: 64261416--64261460 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
64261406 TCAGCTAACC
64261416 TGATTGTGCAAGTTG
1 TGATT-TGCAAGTTG
64261431 TGATTTGCAAGTTG
1 TGATTTGCAAGTTG
** *
64261445 CAATGTGCAAGTTG
1 TGATTTGCAAGTTG
64261459 TG
1 TG
64261461 CAAGTTGCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.38
Consensus pattern (14 bp):
TGATTTGCAAGTTG
Found at i:64272785 original size:93 final size:93
Alignment explanation
Indices: 64272677--64272847 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
64272667 GCCCCTAAGT
* ** *
64272677 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
64272742 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
64272770 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
64272835 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64272848 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64272835 original size:46 final size:45
Alignment explanation
Indices: 64272670--64272842 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
64272660 GTAACCCGCC
* * ** *
64272670 CCTAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCACAT
* *
64272715 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCACAT
* * *
64272765 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCACAT
64272808 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
64272843 GATGCTCAAC
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.54
47 26 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCACAT
Found at i:64274818 original size:42 final size:41
Alignment explanation
Indices: 64274737--64274819 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 41
64274727 TAGGTACAGA
* * *
64274737 CTTCACACGATTGGGACACACGCCCGTGCTTGAGGCCGTGTC
1 CTTCACACGACTGAGACACACGCCCGTGCTT-AGCCCGTGTC
*
64274779 CTTCACATGACTGAGACACACGCCCGTGTCTCT-GCCCGTGT
1 CTTCACACGACTGAGACACACGCCCGTG-CT-TAGCCCGTGT
64274820 GCTCAATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 32 0.91
43 2 0.06
44 1 0.03
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (41 bp):
CTTCACACGACTGAGACACACGCCCGTGCTTAGCCCGTGTC
Found at i:64285093 original size:43 final size:43
Alignment explanation
Indices: 64285005--64285143 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 43
64284995 GTGATTACAG
* *
64285005 GTAAGACCATGTCTAGGACATTGGCATTGTATTGAGATTATAT
1 GTAAGACCATGTCTAGGACATTGGCATCGTAATGAGATTATAT
* *
64285048 GTATGACCATGTCTAGGACATTGGCATCGTTAAT-CGATT-TCAT
1 GTAAGACCATGTCTAGGACATTGGCATCG-TAATGAGATTAT-AT
* * * * * * *
64285091 GTAAGACCCTGTTTAGGACAATGGCTTCG-ATATGTGATAACAT
1 GTAAGACCATGTCTAGGACATTGGCATCGTA-ATGAGATTATAT
64285134 GTAAGACCAT
1 GTAAGACCAT
64285144 ATTTGAGATA
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 71 0.91
44 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACATTGGCATCGTAATGAGATTATAT
Found at i:64294118 original size:43 final size:42
Alignment explanation
Indices: 64294044--64294164 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
64294034 CAAAAATCTC
* * *
64294044 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAA
*
64294086 ATATTGATG-CAACAGTCCCAGACAG-GGTCTTACACGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAA
* *
64294129 ATACGATGCCAACGTCCCAGATGTGGTCTTATACGA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACACGA
64294165 TAACACATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 30 0.45
43 35 0.52
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAA
Found at i:64298678 original size:75 final size:75
Alignment explanation
Indices: 64298555--64298704 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
64298545 TAAGGAATTA
64298555 CTCCAAGGAAGCTGATTGATCCATCTCAGAAGCCAGATTCATCATTAAGACTAAAGATCTCTCCT
1 CTCCAAGGAAGCTGATTGATCCATCTCAGAAGCCAGATTCATCATTAAGACTAAAGATCTCTCCT
64298620 CAATTTCCCT
66 CAATTTCCCT
64298630 CTCCAAGGAAGCTGATTGATCCATCTCAGAAGCCAGATTCATCATTAAGACTAAAGATCTCTCCT
1 CTCCAAGGAAGCTGATTGATCCATCTCAGAAGCCAGATTCATCATTAAGACTAAAGATCTCTCCT
64298695 CAATTTCCCT
66 CAATTTCCCT
64298705 TCAGGAGTTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (75 bp):
CTCCAAGGAAGCTGATTGATCCATCTCAGAAGCCAGATTCATCATTAAGACTAAAGATCTCTCCT
CAATTTCCCT
Found at i:64303545 original size:39 final size:39
Alignment explanation
Indices: 64303449--64303574 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
64303439 GACTTAATGT
* *
64303449 CTAGCAGGCCTCGTGCCGATAATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* *
64303488 CTAGTAGGCCTCGTGCCGGTGATAAATTTAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * * * *
64303527 CTAGCAGGCCTCGTGCCGGTGTTAAGTCCGGGTTTATAT
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
64303566 CTAGCAGGC
1 CTAGCAGGC
64303575 AAAATGCCGG
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:64311050 original size:40 final size:40
Alignment explanation
Indices: 64310976--64311200 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
64310966 AACCCAAGTA
* * *
64310976 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
64311015 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64311055 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
64311098 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64311138 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64311178 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
64311201 CATCCGAATA
Statistics
Matches: 168, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
39 13 0.08
40 117 0.70
41 1 0.01
43 36 0.21
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:64311099 original size:83 final size:82
Alignment explanation
Indices: 64310976--64311200 Score: 327
Period size: 83 Copynumber: 2.8 Consensus size: 82
64310966 AACCCAAGTA
* * *
64310976 CCTTCGGGATTTAG-CCGGATATAGCA--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
64311038 AGTCACTAGCACAAATG
66 AGTCACTAGCACAAATG
* *
64311055 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
64311120 TAGTCACTAGCACAAATG
65 TAGTCACTAGCACAAATG
* *
64311138 CCTTCGGGACTTAGCCCGGATATGGTCACTA---GCACAAATGCCTTCAGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAG-CACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
64311200 T
65 T
64311201 CATCCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
79 13 0.10
80 40 0.30
81 1 0.01
83 77 0.58
84 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (82 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTCACTAGCACAAATG
Found at i:64323625 original size:25 final size:24
Alignment explanation
Indices: 64323591--64323653 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 24
64323581 NNNNNNNNNN
64323591 GGCAGAGCCCTTTCGGATAAACTGG
1 GGCAGAGCCCTTTCGG-TAAACTGG
64323616 GGCAGAGCCCTTTTCGGTAAACTGG
1 GGCAGAGCCC-TTTCGGTAAACTGG
*
64323641 GGCAGAGCACTTT
1 GGCAGAGCCCTTT
64323654 TAGCACTTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
24 3 0.08
25 27 0.75
26 6 0.17
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.22
Consensus pattern (24 bp):
GGCAGAGCCCTTTCGGTAAACTGG
Found at i:64323713 original size:16 final size:15
Alignment explanation
Indices: 64323687--64323716 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
64323677 CCCATATCCC
64323687 ATGCAAATGTCATGT
1 ATGCAAATGTCATGT
64323702 ATGCAGAATGTCATG
1 ATGCA-AATGTCATG
64323717 CCCATATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (15 bp):
ATGCAAATGTCATGT
Found at i:64324518 original size:27 final size:27
Alignment explanation
Indices: 64324457--64324520 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
64324447 GGCGTATTCA
64324457 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
64324484 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
64324511 TCTTTTTACC
1 TCATTTTACC
64324521 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:64324604 original size:27 final size:28
Alignment explanation
Indices: 64324574--64324680 Score: 80
Period size: 27 Copynumber: 3.9 Consensus size: 28
64324564 GTAAATCTAC
64324574 AAACT-AAGGGTATTTTAGTAATTTTGT
1 AAACTCAAGGGTATTTTAGTAATTTTGT
* * **
64324601 AAAC-CAATGGTATTCCTA-TAAATTTTAAA
1 AAACTCAAGGGTATT-TTAGT-AATTTT-GT
*
64324630 AAAGTCAAGGGTATTTCT-GTAATTTTGT
1 AAACTCAAGGGTATTT-TAGTAATTTTGT
* *
64324658 AAA-TCAGGGGTATTTTGGTAATT
1 AAACTCAAGGGTATTTTAGTAATT
64324681 CTATCCTACA
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
26 1 0.02
27 30 0.48
28 11 0.18
29 9 0.15
30 11 0.18
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (28 bp):
AAACTCAAGGGTATTTTAGTAATTTTGT
Found at i:64324772 original size:27 final size:27
Alignment explanation
Indices: 64324702--64324827 Score: 107
Period size: 27 Copynumber: 4.8 Consensus size: 27
64324692 GGGTATTTCA
* *
64324702 GTAATTTTAT-ATTTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
64324728 GTAA-TTTA-AACT-GAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACG
*
64324752 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* * ****
64324779 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
64324806 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
64324828 TTTCAGTAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
24 15 0.19
25 9 0.11
26 7 0.09
27 49 0.61
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACG
Found at i:64324813 original size:54 final size:51
Alignment explanation
Indices: 64324716--64324827 Score: 125
Period size: 54 Copynumber: 2.1 Consensus size: 51
64324706 TTTTATATTT
* * **
64324716 GAGGGTAAAACGGTAATTTAAACTGAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAACGATAATTTAAAATGAGGGTAAAATGGTAATTTTACAAATC
*** *
64324767 GAGGGTAAAACGATAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTC
1 GAGGGTAAAACGATAATT-TA-AAAT-GAGGGTAAAATGGTAATTTTACAAATC
64324821 GAGGGTA
1 GAGGGTA
64324828 TTTCAGTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
51 17 0.34
52 2 0.04
53 3 0.06
54 28 0.56
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (51 bp):
GAGGGTAAAACGATAATTTAAAATGAGGGTAAAATGGTAATTTTACAAATC
Found at i:64327073 original size:46 final size:46
Alignment explanation
Indices: 64326930--64327096 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
64326920 TGTGTGAGCT
* * **
64326930 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACAT-A-AGCC
* * * * *
64326976 AGAGTAAGACCATGTCTGGGACATGGCATCCGCATTGAGACAGT--GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACA-TAAGCC
64327023 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACATAAGCC
64327069 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
64327097 GGCTAAACGT
Statistics
Matches: 101, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
44 1 0.01
45 14 0.14
46 52 0.51
47 24 0.24
48 7 0.07
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACATAAGCC
Found at i:64329562 original size:42 final size:42
Alignment explanation
Indices: 64329510--64329637 Score: 123
Period size: 42 Copynumber: 3.0 Consensus size: 42
64329500 ATACATAGTA
* * * **
64329510 TCATAACAATGCCATATCCCAAATATGATCTTACATGGGATC
1 TCATATCAATGCCATATCCCAGATATGATCTTACACGAAATC
* * * *
64329552 TCATATCAATGTCAATAGCCCAGCTAT-AGTCTTTCACGAAATC
1 TCATATCAATG-CCATATCCCAGATATGA-TCTTACACGAAATC
* * *
64329595 TCATATCGATGCCATATCCCAGATATGGTCTTACACGTAATC
1 TCATATCAATGCCATATCCCAGATATGATCTTACACGAAATC
64329637 T
1 T
64329638 TAGCGAACCC
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 36 0.54
43 31 0.46
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.30
Consensus pattern (42 bp):
TCATATCAATGCCATATCCCAGATATGATCTTACACGAAATC
Found at i:64331475 original size:39 final size:40
Alignment explanation
Indices: 64331430--64331601 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
64331420 GCTCCTCGTT
* * *
64331430 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
64331470 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
64331509 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
64331549 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
64331589 CAAATGCCTTCGG
1 CAAATGCCTTCGG
64331602 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:64331530 original size:40 final size:39
Alignment explanation
Indices: 64331432--64331654 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
64331422 TCCTCGTTCA
* * * *
64331432 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
64331471 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
64331510 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
64331550 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
64331590 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
64331631 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64331655 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:64331614 original size:80 final size:79
Alignment explanation
Indices: 64331430--64331654 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
64331420 GCTCCTCGTT
* * * * *
64331430 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
64331494 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
64331509 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
64331574 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
64331589 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
64331653 GA
63 GA
64331655 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:64331663 original size:41 final size:41
Alignment explanation
Indices: 64331586--64331663 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
64331576 TTTGTATCTC
* * *
64331586 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
64331627 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
64331664 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:64343385 original size:80 final size:80
Alignment explanation
Indices: 64343181--64343405 Score: 260
Period size: 80 Copynumber: 2.8 Consensus size: 80
64343171 TTGAATGATG
* * * * * *
64343181 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
* * *
64343244 TCGTGGGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * *
64343261 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
64343324 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
64343340 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
64343405 G
66 G
64343406 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.45
80 63 0.52
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:64343404 original size:40 final size:39
Alignment explanation
Indices: 64343182--64343405 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
64343172 TGAATGATGT
* * * *
64343182 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * * * * *
64343222 CCGGACTAAGAT-CCGAAGGTATTCGTGGGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
64343262 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64343300 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64343340 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64343381 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64343406 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 32 0.20
40 118 0.75
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64343423 original size:80 final size:80
Alignment explanation
Indices: 64343255--64343438 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 80
64343245 CGTGGGAGAT
* * *
64343255 ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAG
** *
64343319 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTG
* * *
64343334 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA-CCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAA
64343398 GGCATTTGAACGAG-G
65 GGCATTTGAACGAGTG
* * *
64343413 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
64343439 TACGTGATTT
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 30 0.33
80 58 0.64
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAG
GCATTTGAACGAGTG
Found at i:64351315 original size:39 final size:40
Alignment explanation
Indices: 64351211--64351431 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
64351201 ATGATGTCCA
* * * *
64351211 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCACATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * * * *
64351251 GACTAAGAT-CCGAAGGTATTCGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
64351291 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
64351330 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
64351370 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
64351410 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
64351432 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.21
40 116 0.73
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:64351449 original size:80 final size:80
Alignment explanation
Indices: 64351281--64351464 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 80
64351271 CGTGCGAGAT
* * *
64351281 ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAG
** *
64351345 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTG
* *
64351360 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAA
64351424 GGCATTTGAACGAG-G
65 GGCATTTGAACGAGTG
* * *
64351439 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
64351465 TACGTGATTT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 30 0.33
80 59 0.65
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAG
GCATTTGAACGAGTG
Found at i:64351453 original size:119 final size:119
Alignment explanation
Indices: 64351214--64351464 Score: 260
Period size: 119 Copynumber: 2.1 Consensus size: 119
64351204 ATGTCCAGGC
* *
64351214 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCACATCCGGACTAAGATCCGAAGGTATTCGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAG
* ** *
64351279 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATCCGGGT
* * * ** *
64351333 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCG
* * * *
64351396 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAATCCGGGT
* *
64351452 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
64351465 TACGTGATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 75 0.69
120 31 0.28
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATCCGGGT
Found at i:64353407 original size:47 final size:47
Alignment explanation
Indices: 64353338--64353643 Score: 504
Period size: 47 Copynumber: 6.5 Consensus size: 47
64353328 GTGTGTATAC
*
64353338 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64353385 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64353432 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGAGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64353479 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64353526 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
64353573 GTGGAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
64353620 GTGAAAGTGTATAAATTTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
64353644 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 243 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:64353818 original size:37 final size:37
Alignment explanation
Indices: 64353762--64353840 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64353752 TCGAGCTCTA
* * *
64353762 AAGACCCGACGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
* *
64353799 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
64353836 AAGAC
1 AAGAC
64353841 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64355779 original size:40 final size:39
Alignment explanation
Indices: 64355695--64356083 Score: 225
Period size: 40 Copynumber: 9.7 Consensus size: 39
64355685 TCGAATGATG
* * * * *
64355695 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64355735 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64355775 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
64355814 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
** * * **
64355855 -CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
* * * **
64355894 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTAAA
** * * **
64355934 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
* * * **
64355974 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTAAA
** * * **
64356014 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
*
64356054 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGC
64356084 TAGTGATATA
Statistics
Matches: 312, Mismatches: 26, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
39 38 0.12
40 249 0.80
41 25 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64355939 original size:80 final size:80
Alignment explanation
Indices: 64355733--64356156 Score: 534
Period size: 80 Copynumber: 5.3 Consensus size: 80
64355723 TAAGTGACCA
* * * * *
64355733 TATCCGGACTAAGATCCGAAG-GCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAG-G
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA-TCCGGGCTAAGTCCCGAAGAG
** * * *
64355794 CATTGGTGCGAGTTACTA
64 CATTCATGCTAGTGA-TG
* * * * * * *
64355812 AATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGAGC
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGC
64355876 ATTCATGCTAGTGATG
65 ATTCATGCTAGTGATG
*
64355892 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
64355957 TTCATGCTAGTGATG
66 TTCATGCTAGTGATG
*
64355972 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
64356037 TTCATGCTAGTGATG
66 TTCATGCTAGTGATG
* **
64356052 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
* * *
64356117 TTCATGCTGGTGTTA
66 TTCATGCTAGTGATG
* *
64356132 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCA
64356157 ATCATGCTGG
Statistics
Matches: 313, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
79 45 0.14
80 243 0.78
81 25 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
TTCATGCTAGTGATG
Found at i:64356085 original size:40 final size:40
Alignment explanation
Indices: 64355813--64356169 Score: 491
Period size: 40 Copynumber: 8.9 Consensus size: 40
64355803 GAGTTACTAA
* ** * * *
64355813 ATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGT
*
64355853 AACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
64355893 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
64355933 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
64355973 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
64356013 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
64356053 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * *
64356093 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
64356133 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
64356170 CGTGTATTCG
Statistics
Matches: 284, Mismatches: 32, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 272 0.96
41 12 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:64358423 original size:47 final size:47
Alignment explanation
Indices: 64358354--64358940 Score: 1077
Period size: 47 Copynumber: 12.5 Consensus size: 47
64358344 GTGTGTATAC
*
64358354 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358401 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358448 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358495 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358542 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64358589 GTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358636 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358683 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT-AAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358729 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358776 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64358823 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
64358870 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64358917 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
64358941 TCCCGAAGGG
Statistics
Matches: 526, Mismatches: 13, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
46 46 0.09
47 480 0.91
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:64359115 original size:37 final size:37
Alignment explanation
Indices: 64359059--64359137 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64359049 CCGAGCTCTA
* * *
64359059 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64359096 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64359133 AAGAC
1 AAGAC
64359138 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64364279 original size:19 final size:20
Alignment explanation
Indices: 64364255--64364292 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64364245 GGTACCACCA
64364255 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64364274 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64364293 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64364588 original size:46 final size:45
Alignment explanation
Indices: 64364521--64364688 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
64364511 CGCCCCTAAG
*
64364521 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCATCCATAAA
* * * * **
64364567 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCATCCA-TAAA
* * * *
64364614 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCATCCATAAA
64364660 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
64364689 ATGCTCAACC
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 61 0.62
47 34 0.35
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCATCCATAAA
Found at i:64364632 original size:93 final size:93
Alignment explanation
Indices: 64364522--64364692 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
64364512 GCCCCTAAGT
* * *
64364522 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64364587 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
64364615 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64364680 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64364693 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:64371795 original size:19 final size:20
Alignment explanation
Indices: 64371771--64371808 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64371761 GGTACCACCA
64371771 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64371790 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64371809 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64372105 original size:46 final size:46
Alignment explanation
Indices: 64372037--64372158 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
64372027 CGCCCCTAAG
* * * * *
64372037 TGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATTCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
*
64372083 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
64372129 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
64372159 TGCTCAACCA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:64372177 original size:46 final size:45
Alignment explanation
Indices: 64372033--64372169 Score: 150
Period size: 46 Copynumber: 3.0 Consensus size: 45
64372023 AACCCGCCCC
* * ** * **
64372033 TAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAATGCGCAACCA
* * *
64372079 TAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCA
*
64372125 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
64372169 T
1 T
64372170 CCTAGTGACA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
44 9 0.11
45 2 0.03
46 69 0.86
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
Found at i:64376590 original size:47 final size:48
Alignment explanation
Indices: 64376533--64376798 Score: 176
Period size: 47 Copynumber: 5.6 Consensus size: 48
64376523 AGTACCAATA
**
64376533 TAAGACCATGTCTAAGACATGGCATCGGCATAGAGACGAGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGACGAGTGCTAGTG
* * * * *
64376581 TAAGA-CATGTCTGGGACAT-ACATCGGCCTCGACGATG-GTAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGA-GACGAGT-GCTAGTG
* * *
64376628 TAAGA-CGTGTCTGGGACA-CGCATCGGC-TA-AGA-GTTGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGACG-AGTGCTAGTG
* * * * * *
64376672 TAAGA-CATGTGTGGGACAT-GCATCAGCACATATATACGAGAGCTAGTA
1 TAAGACCATGTCTGGGACATGGCATC-G-GCATAGAGACGAGTGCTAGTG
* ** * * * * *
64376720 TAAGACCATGTCTAGGATGTGGCATCAGCCTCGATGATGA-TAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGA-GACGAGT-GCTAGTG
64376769 TAAGACCATGTCTGGGACATGGCATCGGCA
1 TAAGACCATGTCTGGGACATGGCATCGGCA
64376799 ACTTATCCCA
Statistics
Matches: 166, Mismatches: 37, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.17
45 4 0.02
46 14 0.08
47 47 0.28
48 22 0.13
49 44 0.27
50 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATAGAGACGAGTGCTAGTG
Found at i:64376687 original size:44 final size:46
Alignment explanation
Indices: 64376478--64376797 Score: 159
Period size: 47 Copynumber: 6.8 Consensus size: 46
64376468 AATTTCTTGT
* * * * **
64376478 GTGCCAGTGTAATACATGTCTGGGACATGCATTGGCC-ACATTATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGATG
* * * * ** * *
64376523 AGTACCAATATAAGACCATGTCTAAGACATGGCATCGGCATAGA-GACG
1 -GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGACGATG
* *
64376571 AGTGCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGACGATG
1 -GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGATG
* * * *
64376618 GTAGCCAGTGTAAGACGTGTCTGGGACACGCATCGG-CTA-A-GAGTT
1 GT-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGA-TG
* * *
64376663 GTGCTAGTGTAAGACATGTGTGGGACATGCATCAGCACATATATACGA--
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-C---TAGACGATG
* * * ** * * *
64376711 GAGCTAGTATAAGACCATGTCTAGGATGTGGCATCAGCCTCGATGATG
1 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGACGATG
* *
64376759 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GT-GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
64376798 AACTTATCCC
Statistics
Matches: 207, Mismatches: 49, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
44 30 0.14
45 4 0.02
46 29 0.14
47 56 0.27
48 32 0.15
49 45 0.22
50 9 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGATG
Found at i:64388058 original size:24 final size:24
Alignment explanation
Indices: 64388026--64388073 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
64388016 GAGATTGAGT
64388026 CAGATTTTCGTATTAGTACCGATG
1 CAGATTTTCGTATTAGTACCGATG
64388050 CAGATTTTCGTATTAGTACCGATG
1 CAGATTTTCGTATTAGTACCGATG
64388074 GTTGTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (24 bp):
CAGATTTTCGTATTAGTACCGATG
Found at i:64390694 original size:47 final size:46
Alignment explanation
Indices: 64390620--64390837 Score: 221
Period size: 47 Copynumber: 4.7 Consensus size: 46
64390610 GATTTCTTGT
**
64390620 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
* **
64390666 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGG-CACAGAGACAA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-AGATGA
* * *
64390714 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAGATGA
* * * *
64390761 -TAGCCAGTGTAAGACGTGTCTGGGACACGCATCGG-C-TAAGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATG-A
* *
64390805 GTGCTAGTGTAAGACATGTTTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
64390838 AGCATGTATA
Statistics
Matches: 143, Mismatches: 21, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 30 0.21
45 1 0.01
46 22 0.15
47 66 0.46
48 23 0.16
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
Found at i:64390781 original size:94 final size:91
Alignment explanation
Indices: 64390620--64390837 Score: 271
Period size: 94 Copynumber: 2.4 Consensus size: 91
64390610 GATTTCTTGT
* **
64390620 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTATAAGACCATG
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACACGATGAGTGCCAGTATAAGACCATG
*
64390685 TCTGGGACATGGCATCGGC-ACAGAGACAA
66 TCTGGGACA-CGCATCGGCTA-AGAG--AA
* * *
64390714 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGACGATGA-TAGCCAGTGTAAGA-CG
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ACGATGAGT-GCCAGTATAAGACCA
**
64390777 TGTCTGGGACACGCATCGGCTAAGAGTT
64 TGTCTGGGACACGCATCGGCTAAGAGAA
*
64390805 GTGCTAGTGTAAGACATGTTTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATC
64390838 AGCATGTATA
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
91 32 0.29
93 12 0.11
94 51 0.46
95 16 0.14
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACACGATGAGTGCCAGTATAAGACCATG
TCTGGGACACGCATCGGCTAAGAGAA
Found at i:64394513 original size:31 final size:32
Alignment explanation
Indices: 64394417--64394517 Score: 91
Period size: 32 Copynumber: 3.2 Consensus size: 32
64394407 TTTTGATTAA
** *
64394417 TTCAAGTACCAACTAGGT-TCTTTTTGGACAAG
1 TTCAAGTACCAACTAAATACCTTTTT-GACAAG
* * *
64394449 TTTAAGTACCAACTAAGTACCTTTTAT-ATAAG
1 TTCAAGTACCAACTAAATACCTTTT-TGACAAG
* *
64394481 TTCAGGTACCAATTAAATA-CTTTTTGACAAG
1 TTCAAGTACCAACTAAATACCTTTTTGACAAG
64394512 TTCAAG
1 TTCAAG
64394518 AGGTAAGCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
30 1 0.02
31 14 0.25
32 35 0.62
33 5 0.09
34 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36
Consensus pattern (32 bp):
TTCAAGTACCAACTAAATACCTTTTTGACAAG
Found at i:64394726 original size:15 final size:15
Alignment explanation
Indices: 64394706--64394737 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
64394696 TTAACAGTGT
64394706 TAATAATTAAACTTG
1 TAATAATTAAACTTG
64394721 TAATAATTAAACTTG
1 TAATAATTAAACTTG
64394736 TA
1 TA
64394738 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (15 bp):
TAATAATTAAACTTG
Found at i:64401297 original size:12 final size:12
Alignment explanation
Indices: 64401280--64401305 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64401270 TTTGTGATTT
64401280 ATTTCTCTCATA
1 ATTTCTCTCATA
64401292 ATTTCTCTCATA
1 ATTTCTCTCATA
64401304 AT
1 AT
64401306 AATCATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTCTCTCATA
Found at i:64404265 original size:13 final size:14
Alignment explanation
Indices: 64404247--64404288 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
64404237 TTTCAATTCT
64404247 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
64404260 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
64404275 ATTTTAAATAATAT
1 ATTTT-AATAATAT
64404289 TCTTCAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:64404273 original size:16 final size:16
Alignment explanation
Indices: 64404251--64404287 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
64404241 AATTCTATTT
64404251 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
64404268 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
64404283 TAATA
1 TAATA
64404288 TTCTTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:64404768 original size:23 final size:26
Alignment explanation
Indices: 64404714--64404768 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 26
64404704 TACAAGGATT
64404714 TATGACATATTTTAACCTAGTTAGAAA
1 TATGACATATTTTAACCTAG-TAGAAA
*
64404741 TATGA-ATATTTTAA-CTA-TATAAA
1 TATGACATATTTTAACCTAGTAGAAA
64404764 TATGA
1 TATGA
64404769 GTTTTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 10 0.37
25 3 0.11
26 9 0.33
27 5 0.19
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (26 bp):
TATGACATATTTTAACCTAGTAGAAA
Found at i:64405800 original size:12 final size:12
Alignment explanation
Indices: 64405783--64405812 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
64405773 ACAATATCAT
*
64405783 AATAATCCTAAC
1 AATAATCCTAAA
64405795 AATAATCCTAAA
1 AATAATCCTAAA
64405807 AATAAT
1 AATAAT
64405813 ATTCAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAATCCTAAA
Found at i:64406410 original size:18 final size:17
Alignment explanation
Indices: 64406387--64406425 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
64406377 TTTTCCTTCG
64406387 TTTTA-TTTATTTATTTAT
1 TTTTATTTTA-TTA-TTAT
64406405 TTTTATTTTATTATTAT
1 TTTTATTTTATTATTAT
64406422 TTTT
1 TTTT
64406426 TAATGCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTATTATTAT
Found at i:64406427 original size:18 final size:18
Alignment explanation
Indices: 64406387--64406425 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
64406377 TTTTCCTTCG
64406387 TTTTATTTATTTATTTAT
1 TTTTATTTATTTATTTAT
64406405 TTTTATTT-TATTA-TTAT
1 TTTTATTTAT-TTATTTAT
64406422 TTTT
1 TTTT
64406426 TAATGCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTATTTATTTATTTAT
Found at i:64406775 original size:16 final size:16
Alignment explanation
Indices: 64406754--64406786 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64406744 TAAGCTTGTG
64406754 CTCATAACCACAGAAT
1 CTCATAACCACAGAAT
64406770 CTCATAACCACAGAAT
1 CTCATAACCACAGAAT
64406786 C
1 C
64406787 ATGATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.33, G:0.06, T:0.18
Consensus pattern (16 bp):
CTCATAACCACAGAAT
Found at i:64407454 original size:14 final size:14
Alignment explanation
Indices: 64407432--64407463 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
64407422 AACATTGAAG
*
64407432 AAAATAAAGAAAAT
1 AAAAAAAAGAAAAT
64407446 AAAAAAAAGAAAAT
1 AAAAAAAAGAAAAT
64407460 AAAA
1 AAAA
64407464 TTGGATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.09
Consensus pattern (14 bp):
AAAAAAAAGAAAAT
Found at i:64409433 original size:40 final size:40
Alignment explanation
Indices: 64409352--64409611 Score: 359
Period size: 40 Copynumber: 6.6 Consensus size: 40
64409342 AAACCAAGTA
** * *
64409352 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
64409391 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
64409431 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
64409471 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
64409510 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * *
64409550 CCTTCGGG-CTTAGCCTGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
*
64409589 CCTTCGGAACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
64409612 CATCCGAATA
Statistics
Matches: 199, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 83 0.42
40 114 0.57
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:64409485 original size:79 final size:79
Alignment explanation
Indices: 64409352--64409611 Score: 364
Period size: 79 Copynumber: 3.3 Consensus size: 79
64409342 AAACCAAGTA
** * *
64409352 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTC-GGACTTAGCCCGGTTATA
64409415 GTAACTCGCACAATTG
64 GTAACTCGCACAATTG
64409431 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
64409496 AACTCGCACAATTG
66 AACTCGCACAATTG
* * * *
64409510 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGCTTAGCCTGG-AATTAG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTA-TAG
* * *
64409574 TCACTAGCACAAATG
65 TAACTCGCACAATTG
*
64409589 CCTTCGGAACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
64409612 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.01
79 139 0.84
80 26 0.16
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
AACTCGCACAATTG
Found at i:64409601 original size:119 final size:119
Alignment explanation
Indices: 64409362--64409611 Score: 364
Period size: 119 Copynumber: 2.1 Consensus size: 119
64409352 CCTTCGGGGT
* *
64409362 TTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGTTATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * *
64409426 AATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGAC
66 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGAC
* *
64409480 TTAGCCCGGTTATAG-TAACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 TTAGCCCGGTTATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
64409544 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTCACTAGCACAAATGCCTTCGGAAC
65 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGG-AC
64409599 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
64409612 CATCCGAATA
Statistics
Matches: 119, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
117 1 0.01
118 37 0.31
119 81 0.68
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (119 bp):
TTAGCCCGGTTATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGAC
Found at i:64414423 original size:31 final size:31
Alignment explanation
Indices: 64414387--64414560 Score: 215
Period size: 31 Copynumber: 5.5 Consensus size: 31
64414377 TGTGTACAAT
* *
64414387 GTGAAAAGTGGTAGCTTCGACTACCCGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
64414418 GTGAAAAGTGGTAGCTTCGGCTACCTGATGA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
64414449 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
64414480 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
64414511 CTGAATAGTGGTAGCTTCGGCTACAAGTGA-CAA
1 GTGAAAAGTGGTAGCTTCGGCTAC--CTGATC-A
*
64414544 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
64414561 TAGCTACACT
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
31 104 0.85
32 1 0.01
33 18 0.15
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:64414654 original size:27 final size:27
Alignment explanation
Indices: 64414624--64414688 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
64414614 TAGTTGAACT
* *
64414624 ATGGCAAAGTTATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
* *
64414651 ATGGCAAAGTGATATAGTGTGCTAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
64414678 ATAGCAAAGTG
1 ATGGCAAAGTG
64414689 TTCAGTGATC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:64414769 original size:34 final size:34
Alignment explanation
Indices: 64414738--64414805 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
64414728 TGATCCATGG
*
64414738 CAAAG-TGTGAAACGTAGGTATGGTATTTCCATA
1 CAAAGCTGTGAAACGTAGGAATGGTATTTCCATA
* * *
64414771 CCAAGCTGTGAAATGTAGGAATGGTGTTTCCATA
1 CAAAGCTGTGAAACGTAGGAATGGTATTTCCATA
64414805 C
1 C
64414806 TGAGTTGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 4 0.13
34 26 0.87
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (34 bp):
CAAAGCTGTGAAACGTAGGAATGGTATTTCCATA
Found at i:64419212 original size:29 final size:31
Alignment explanation
Indices: 64419163--64419221 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
64419153 AATGTGTATC
* *
64419163 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTAGAGATAG
64419192 TATTTATTATAATAGAT-AAATGTAGAGATA
1 TATTTATT-TAATAGATGAAATGTAGAGATA
64419222 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTAGAGATAG
Found at i:64429389 original size:40 final size:39
Alignment explanation
Indices: 64429305--64429489 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
64429295 TTGAATGATG
* * * *
64429305 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
64429345 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
64429385 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
64429424 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
64429465 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
64429490 AACGAGGAGA
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64429441 original size:79 final size:81
Alignment explanation
Indices: 64429305--64429489 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
64429295 TTGAATGATG
*
64429305 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
64429369 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
64429384 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
64429446 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
64429464 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64429490 AACGAGGAGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:64429511 original size:79 final size:79
Alignment explanation
Indices: 64429358--64429522 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
64429348 GGACTAAGAT
* ** * *
64429358 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGAATAA
*
64429423 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
64429437 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGA
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-A
* *
64429500 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
64429516 CCGAAGG
1 CCGAAGG
64429523 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGAATAA
ATCCGGGTTAAATC
Found at i:64436222 original size:40 final size:40
Alignment explanation
Indices: 64436167--64436433 Score: 475
Period size: 40 Copynumber: 6.7 Consensus size: 40
64436157 TGAGCATTGG
64436167 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
64436207 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
64436247 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
64436287 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
64436327 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
64436367 GATATATCCGGGCTAAGA-CCGAAGGC-ATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
64436405 GATATGTCCGGGCTAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
64436434 ATGTGTTTGC
Statistics
Matches: 220, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
38 28 0.13
39 16 0.07
40 176 0.80
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:64448442 original size:14 final size:15
Alignment explanation
Indices: 64448406--64448443 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
64448396 TCCCTTGCAT
*
64448406 ATTAGATTAACATGG
1 ATTAGATTAAAATGG
64448421 ATTTAGATTAAAATGG
1 A-TTAGATTAAAATGG
64448437 -TTAGATT
1 ATTAGATT
64448444 TTAAGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 1 0.05
16 13 0.62
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.39
Consensus pattern (15 bp):
ATTAGATTAAAATGG
Found at i:64450064 original size:38 final size:38
Alignment explanation
Indices: 64450021--64450096 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
64450011 TTCATCCTTT
64450021 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64450059 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64450097 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:64451379 original size:40 final size:40
Alignment explanation
Indices: 64451285--64451429 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
64451275 TACTCGAATG
*
64451285 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAA-CGACT
* *
64451326 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAACGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAACGACT
* * ** *
64451366 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACGACT
* *
64451406 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64451430 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 57 0.64
41 30 0.34
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACGACT
Found at i:64454431 original size:26 final size:26
Alignment explanation
Indices: 64454402--64454455 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
64454392 ACACATGAGA
*
64454402 TCAATGGG-CGGAGCCCCTTGTGGGGG
1 TCAA-GGGACGGAGCCCCCTGTGGGGG
*
64454428 TCAAGGGATGGAGCCCCCTGTGGGGG
1 TCAAGGGACGGAGCCCCCTGTGGGGG
64454454 TC
1 TC
64454456 CCGTTGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.13, C:0.24, G:0.44, T:0.19
Consensus pattern (26 bp):
TCAAGGGACGGAGCCCCCTGTGGGGG
Found at i:64459368 original size:28 final size:28
Alignment explanation
Indices: 64459328--64459386 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
64459318 TAAGCAATGC
64459328 TCAAACTTGGTTATAGGAAATGACTTAG
1 TCAAACTTGGTTATAGGAAATGACTTAG
*
64459356 TCAAACTTGGTTATAGGAAGTGACTTAG
1 TCAAACTTGGTTATAGGAAATGACTTAG
64459384 TCA
1 TCA
64459387 TCATATCTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (28 bp):
TCAAACTTGGTTATAGGAAATGACTTAG
Found at i:64470185 original size:17 final size:17
Alignment explanation
Indices: 64470145--64470192 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
64470135 CATTGATATG
*
64470145 CATATAATATATATACA
1 CATATAATATATACACA
*
64470162 CACATAATATATACACA
1 CATATAATATATACACA
64470179 -ATTATAATAATATA
1 CA-TATAAT-ATATA
64470193 AAATTAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 1 0.04
17 20 0.77
18 5 0.19
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.33
Consensus pattern (17 bp):
CATATAATATATACACA
Found at i:64470987 original size:81 final size:81
Alignment explanation
Indices: 64470899--64471060 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
64470889 ATAATTAAAA
64470899 TATCAAATCCATAATATTAAAAAGAACGAATCAATCCAAACTTAATAAAGAATCAGTTCATTTTC
1 TATCAAATCCATAATATTAAAAAGAACGAATCAATCCAAACTTAATAAAGAATCAGTTCATTTTC
64470964 AATAATTCAACATGAC
66 AATAATTCAACATGAC
64470980 TATCAAATCCATAATATTAAAAAGAACGAATCAATCCAAACTTAATAAAGAATCAGTTCATTTTC
1 TATCAAATCCATAATATTAAAAAGAACGAATCAATCCAAACTTAATAAAGAATCAGTTCATTTTC
64471045 AATAATTCAACATGAC
66 AATAATTCAACATGAC
64471061 AAAGTTCAGA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.28
Consensus pattern (81 bp):
TATCAAATCCATAATATTAAAAAGAACGAATCAATCCAAACTTAATAAAGAATCAGTTCATTTTC
AATAATTCAACATGAC
Found at i:64482972 original size:31 final size:31
Alignment explanation
Indices: 64482935--64483003 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
64482925 AAAACTTAAC
64482935 TCAATGACTTAAATAAAAACTTCCAAATAAT
1 TCAATGACTTAAATAAAAACTTCCAAATAAT
* * **
64482966 TTAATGACTTAAATGAAAACTTCTGAATAAT
1 TCAATGACTTAAATAAAAACTTCCAAATAAT
64482997 TCAATGA
1 TCAATGA
64483004 TCATTTTGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.32
Consensus pattern (31 bp):
TCAATGACTTAAATAAAAACTTCCAAATAAT
Found at i:64487389 original size:40 final size:40
Alignment explanation
Indices: 64487286--64487436 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
64487276 GGATATAGCT
* * *
64487286 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
64487326 ACTCGCACAATTGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
64487366 ACTCGCACAAATGCCTTCGGGACTT-GCCCGAAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
64487405 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
64487437 TTATCATCCA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 31 0.33
40 61 0.65
41 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:64491832 original size:46 final size:45
Alignment explanation
Indices: 64491782--64491957 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
64491772 TGTTTGGGCA
64491782 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
64491828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
64491875 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
64491921 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64491958 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 69 0.63
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Done.