Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 194 of 320
Found at i:64491937 original size:93 final size:93
Alignment explanation
Indices: 64491778--64491949 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
64491768 AGGATGTTTG
* * *
64491778 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
64491843 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
64491871 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
64491936 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
64491950 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:64509782 original size:40 final size:40
Alignment explanation
Indices: 64509683--64509957 Score: 365
Period size: 40 Copynumber: 6.8 Consensus size: 40
64509673 TTCGAATGAT
* * * * * **
64509683 ATCCGGGCTAAGTCCCAAAAGCTTTTGTGCTAAGTGACTGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
64509724 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* **
64509764 ATCCGGGCCAAAACCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
64509804 ATCCGGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
64509844 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
64509884 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
64509925 AT-CGGGCTATGTCCCGAAGGCATTTGTGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
64509958 GGTTATATCC
Statistics
Matches: 210, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
40 182 0.87
41 27 0.13
42 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:64516517 original size:21 final size:21
Alignment explanation
Indices: 64516491--64516531 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
64516481 ATTTGGCTAA
64516491 AAATATAAATCTGAAAAATAC
1 AAATATAAATCTGAAAAATAC
64516512 AAATATAAATCTGAAAAATA
1 AAATATAAATCTGAAAAATA
64516532 GGTTTGGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.24
Consensus pattern (21 bp):
AAATATAAATCTGAAAAATAC
Found at i:64516685 original size:22 final size:22
Alignment explanation
Indices: 64516645--64516729 Score: 59
Period size: 22 Copynumber: 3.9 Consensus size: 22
64516635 GACAAAAAAT
* *
64516645 TATTATTTTTTTATT-TTTTAA
1 TATTAATTTATTATTATTTTAA
*
64516666 TATTAATTTATTATTATTTT-C
1 TATTAATTTATTATTATTTTAA
* * * *
64516687 TCTCTATTTTATTACTATTTTAT
1 TAT-TAATTTATTATTATTTTAA
*
64516710 TATT-ATTTAGCTATTATTTT
1 TATTAATTTA-TTATTATTTT
64516730 GTTGTTATTG
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
21 19 0.39
22 28 0.57
23 2 0.04
ACGTcount: A:0.25, C:0.06, G:0.01, T:0.68
Consensus pattern (22 bp):
TATTAATTTATTATTATTTTAA
Found at i:64517362 original size:30 final size:30
Alignment explanation
Indices: 64517328--64517388 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
64517318 CCACTCAACT
64517328 ACTAAATTGATCGGTGTCGAAGAAAAAAAG
1 ACTAAATTGATCGGTGTCGAAGAAAAAAAG
64517358 ACTAAATTGATCGGTGTCGAAGAAAAAAAG
1 ACTAAATTGATCGGTGTCGAAGAAAAAAAG
64517388 A
1 A
64517389 AAGAAAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.23, T:0.20
Consensus pattern (30 bp):
ACTAAATTGATCGGTGTCGAAGAAAAAAAG
Found at i:64521330 original size:3 final size:3
Alignment explanation
Indices: 64521316--64521345 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
64521306 TATTTGCACC
*
64521316 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
64521346 ATACATTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:64537681 original size:47 final size:46
Alignment explanation
Indices: 64537630--64537719 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 46
64537620 GAATTATGAG
* *
64537630 GCATCCGAACTAGTTGAGTTGCGTTCCGAGTTCACTTATGGATGCAA
1 GCATCCAAACTAGTTGAGTTGCGTCCCGAGTTCA-TTATGGATGCAA
* *
64537677 GCATCCAAACTCGTTGAGTTGTGTCCCGAGTTCATTATGGATG
1 GCATCCAAACTAGTTGAGTTGCGTCCCGAGTTCATTATGGATG
64537720 TGAAAACTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 9 0.23
47 30 0.77
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (46 bp):
GCATCCAAACTAGTTGAGTTGCGTCCCGAGTTCATTATGGATGCAA
Found at i:64544388 original size:47 final size:46
Alignment explanation
Indices: 64544284--64544551 Score: 199
Period size: 47 Copynumber: 5.7 Consensus size: 46
64544274 GGTAAGGTGT
* * * *
64544284 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-ATCATCTCGAGC
* * *
64544331 CAATGCCATGTCTCAGACATGGTCTTACACTAACTATCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTATCATCTCG-AGC
* * *
64544379 CGATG-CATGTCCCCGACATGTCTTACCCTGGCT-TACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCGA-GC
*** * *
64544425 CGATG-CATGTTTTAGACATGTCTTACACTAGC-ACTCGTCTCGATGT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTA-TCATCTCGA-GC
* * * *
64544471 TGATGCCATGTCCCAGACATGTTCTTACACTGGCTCTCATAAT-GTAGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTAGCTATCAT-CTCG-AGC
* *
64544519 TGATG-CATGTCCCAGGCATGTCTTACACTAGCT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCT
64544552 CACAATAACC
Statistics
Matches: 177, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 72 0.41
47 74 0.42
48 27 0.15
49 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTATCATCTCGAGC
Found at i:64560066 original size:22 final size:22
Alignment explanation
Indices: 64560041--64560092 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
64560031 CACTAGGAAC
64560041 TATGTGATCTGAGCTCATGAGA
1 TATGTGATCTGAGCTCATGAGA
*
64560063 TATGTGGTCTGAGCTCATGAGA
1 TATGTGATCTGAGCTCATGAGA
64560085 TATGTGAT
1 TATGTGAT
64560093 ATATGTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.35
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATGAGA
Found at i:64565256 original size:12 final size:12
Alignment explanation
Indices: 64565239--64565263 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64565229 GTGCGAGAGT
64565239 GAGGAAGGAGAA
1 GAGGAAGGAGAA
64565251 GAGGAAGGAGAA
1 GAGGAAGGAGAA
64565263 G
1 G
64565264 GGATATAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (12 bp):
GAGGAAGGAGAA
Found at i:64565688 original size:988 final size:994
Alignment explanation
Indices: 64562706--64566179 Score: 4716
Period size: 988 Copynumber: 3.5 Consensus size: 994
64562696 GCTTGAACTT
* * * *
64562706 GTAGATGATTTTAAATTTTTTATTATTAGACTACTAAGTTCTATATGTTACACTAAAAATAGGAA
1 GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
** * * *
64562771 TTAAGCAATTGAACATACCAGATGATATAGAAAATACAGGGAAACAAGCATGCTGCTATGTATGA
66 TTAAGCAATTGAATGTACCAGATGAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTATGA
* * * *
64562836 TAAATTGTTGAATTTGTAATT-ATTGGTTGATTAAATTTGTGAAT-ATGGAGATACTTAAGGATG
131 TAAATTTTTGAATTTGTGATTGTTTGGTTG----AA-TTGT-AATAAT--AGA-ACCT---G-T-
* * * * *
64562899 ACCGAAGGCATTGTTTGGTATACAACTAGAGCCAAAAAGCTAACTCTATTTATTAATCTTTAGTA
182 ----AAGGTATTGTTTGGTATACACCCAGAGCCAAAAAGCTAACTCTATTTATTCATCCTTAGTA
* * ** * ** * **
64562964 CCTATATCTGAGCCAGAAAACACTTCTAAATGGACCTTCATACAAAACTTAGTCCAAAAACATTA
243 CCTATATTTGAGCCAGAAAACATTTCTTGATGAACCTTCATACAAAACCCAATCCAAAAATGTTA
*
64563029 ATTTGTATTTACCCTTTTCCTTGGTCCTGAATCGCATGACTATAGACGTCTGGCCATAC-TGTTG
308 ATTTGTATTTACCCTTTTCCTTGGTCCTGAATCGCACGACTATAGACGTCTGGCCATACGTGTTG
* * * * * * *
64563093 AGAGTTAAGTAGATACATTCCGACGGATTTTGTAAAAACAAAGTGAAATAAGAAGGATCAGTATG
373 AGGGTTAAGTAGATACATTACGATGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATATG
* * *
64563158 ATATAGTGATTATAATATGATTAACCTAGTGCATCCTGAGCAAGAAGAAGAAGAGCAAGAAAGTG
438 ATATAGTGATTATAATATGATTGACCCAGTGCATCCTGAGCAAGAAGAAGAGGAGCAAGAAAGTG
* * **
64563223 ATGAAGAGGAAGAGAGCGAGGGTGAGGAAGGAGAAGAGGAAGGAGGGGGGATATATTTTGAGGAG
503 ATGAAGAGGAAGAGTGCGAGAGTGAGGAAGGAGAAGAGGAAGGAGAAGGGATATATTTTGAGGAG
* * * *
64563288 GAGGAAGATGATTAAGCTACAAATTCTTTCTTTTTAAAGGACTATAATTTATTTTAGGATAATTT
568 GAGGAAGATGATTGAGCTACGAGTTCTTTCTTTTTAAAGGACTGTAATTTATTTTAGGATAATTT
** * *
64563353 TATTA-TTTAATAGTAGATTGTTATTTGTTTTTTTTTGTTCTATGTTTTCTGTGTAGGAACTCCA
633 TATTATTTTAGCAGTAGATTGTTATTTG--TTTTTGTGTTCTAAGTTTTCTGTGTAGGAACTCCA
* * * * * *
64563417 TATGAAAG-AA-AC-ACAATTTAGAGCTTTCAA-AGTCAAATGGAAGAGAGCACCCACCAATATA
696 CATGAAAGAAACACAACAATTCAGAGCTTTCAACA-ACAAATTGAATAGAGCACCCACCAATAGA
* *
64563478 TTATGGAACTACCACA-ATCAATCAGGTAACTTTTTCCTTATCTTTTTAGGGCTACACATTGAGG
760 TTATGGAACTACCA-AGATCAATCATGTAACTTTTTCCTTATCTTTTTAGGGTTACACATTGAGG
** * * * * * * *
64563542 ACGACGTGTTATCT-AAA---GT-CTGAGGGTAGCATTGAAAA-TGTTTTAATTTTTTTGCTTTT
824 AAAATGTGTTATCTAAAATGTGTGTTGGGGGTAACATAGAAAATTGTTTTAATTTCTATGCTTTT
* * * *
64563601 ATTTTAATTTTTATGGTCAATTGTGTGCTTGAGCTTGTAGAAGTACAAGTAATTGCTTAGGAAGA
889 -TTTTAATTTTTATGGTCAATCGTGTGCTTGAGCTTGTAGAAATACAAGTAATTGGTTAGGAACA
64563666 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATA
953 TGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATA
*
64563708 GTAGATGATTTTAAATTTTTTATTATTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
1 GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
*
64563773 TTAAGCAATTGAATGTACCAGATGAAATAGAAAATACGGGGAAACGAGCATGCTACTATGTATGA
66 TTAAGCAATTGAATGTACCAGATGAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTATGA
64563838 TAAATTTTTGAATTTGTGATTGTTTGGTTGATTAAATTTGTGAATAATGAGATACCTAGGGATGA
131 TAAATTTTTGAATTTGTGATTGTTTGGTTG----AA-TTGT-AATAAT-AGA-ACC------TG-
*
64563903 CCTAAGGTATTGTTTGGTATACACCCAAAGCCAAAAAGCTAACTCTATTTATTCATCCTTAGTAC
181 --TAAGGTATTGTTTGGTATACACCCAGAGCCAAAAAGCTAACTCTATTTATTCATCCTTAGTAC
* * * *
64563968 CTATATTTGAGCCAAAAAACATTTCTTGATGAATCTTGATACAAAACCCAATCCAAAAATTTTAA
244 CTATATTTGAGCCAGAAAACATTTCTTGATGAACCTTCATACAAAACCCAATCCAAAAATGTTAA
* * * * * * * *
64564033 TTTCTGTTTAACCTTTTCCTTGGTCCTGAATCGCACAACTACAGACGTCTGGACTATACATATTG
309 TTTGTATTTACCCTTTTCCTTGGTCCTGAATCGCACGACTATAGACGTCTGG-CCATACGTGTTG
* *
64564098 AGGGTTAAGTAGATACATTACGATAGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATGTG
373 AGGGTTAAGTAGATACATTACGATGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATATG
* * * * *
64564163 ATGTAATGATTATAATATGATCGACCCAGTGCATCTTGAGCAAGAAGAAGAGGAGCAAGAATGTG
438 ATATAGTGATTATAATATGATTGACCCAGTGCATCCTGAGCAAGAAGAAGAGGAGCAAGAAAGTG
*
64564228 ATGAATAGGAAGAGTGCGAGAGTGAGGAAGGAGAAGAGGAAGGA-AAGGGGATATATTTTGAGGA
503 ATGAAGAGGAAGAGTGCGAGAGTGAGGAAGGAGAAGAGGAAGGAGAA-GGGATATATTTTGAGGA
64564292 GGAGGAAGATGATTGAGCTACGAGTTCTTTCTTTTTAAAGGACTGTAATTTATTTTAGGATAATT
567 GGAGGAAGATGATTGAGCTACGAGTTCTTTCTTTTTAAAGGACTGTAATTTATTTTAGGATAATT
* *
64564357 TTATTATTTTAGCAGTAGATTGTTATTTG--TTTGTGTTTTAATTTTTCTGTGTAGGAACTCCAC
632 TTATTATTTTAGCAGTAGATTGTTATTTGTTTTTGTGTTCTAAGTTTTCTGTGTAGGAACTCCAC
* *
64564420 ATGAAAGAAACACAACAATTCAGAGCTTTCAACGACAAATTGAATAGATCACCCACCAATAGATT
697 ATGAAAGAAACACAACAATTCAGAGCTTTCAACAACAAATTGAATAGAGCACCCACCAATAGATT
* * *
64564485 ATGGAACTACCATGATCAATCTTGTAACTTTTTCCTTATGTTTTTAGGGTTACACATTGA-GAAC
762 ATGGAACTACCAAGATCAATCATGTAACTTTTTCCTTATCTTTTTAGGGTTACACATTGAGGAA-
*
64564549 AATG-GTTATCTAAAGAGAGTGTGTGTGTGGAGGGGCGTAACATAGAAAACTTCTTTTAATTTCT
826 AATGTGTTATCT-AA-A-A-TGTGTGT-T---GGGG-GTAACATAGAAAA-TTGTTTTAATTTCT
*
64564613 AT--TTTATTTGT-ATTTTTATGGTCAATCGTGTGCTTGAGCTTGTAGAAATACAAGTAATT-GT
881 ATGCTTT-TTTTTAATTTTTATGGTCAATCGTGTGCTTGAGCTTGTAGAAATACAAGTAATTGGT
64564674 TAGGAACATGTATATAGGTT-ATTGTATTTACTATAAATTTTGCATGATA
945 TAGGAACATGTATATAGGTTGATTGTATTTACTATAAATTTTGCATGATA
64564723 GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
1 GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
*
64564788 TTAAGCAATTGAATGTACCAGGTGAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTATGA
66 TTAAGCAATTGAATGTACCAGATGAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTATGA
* * *
64564853 TAAATTGTTGAATTTGTGATTGTTTGGTCG-A-T-T-A-AAT-G-A-CT-TAAGGTATTGTTTTG
131 TAAATTTTTGAATTTGTGATTGTTTGGTTGAATTGTAATAATAGAACCTGTAAGGTATTGTTTGG
* * * *
64564909 TATACACCCATAGCTAAAAAGCTAACTCTATTAATTCA-CCTTGAGTACCTATATTTGAGCTAGA
196 TATACACCCAGAGCCAAAAAGCTAACTCTATTTATTCATCCTT-AGTACCTATATTTGAGCCAGA
**
64564973 AAACATTTCTTGATGAACCTTCATACAAAACCTGATCCAAAAATGTTAATTTGTATTTACCCTTT
260 AAACATTTCTTGATGAACCTTCATACAAAACCCAATCCAAAAATGTTAATTTGTATTTACCCTTT
* ** *
64565038 TCCTTGGTCCTGAATTGCACGACTATAGATATCTGGCCATACGTGTTAAGGGTTAAGTAGATACA
325 TCCTTGGTCCTGAATCGCACGACTATAGACGTCTGGCCATACGTGTTGAGGGTTAAGTAGATACA
* * * *
64565103 TTACGGTGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAGTGTGATATAGTGATGATAATA
390 TTACGATGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATATGATATAGTGATTATAATA
* * * * * *
64565168 TGATTGGCCCAGTGTATCCTGAGCAAGAACAAGAGGAGTAGGAAAGTAATGAAGAGGAAGAGTGC
455 TGATTGACCCAGTGCATCCTGAGCAAGAAGAAGAGGAGCAAGAAAGTGATGAAGAGGAAGAGTGC
* *
64565233 GAGAGTGAGGAAGGAGAAGAGGAAGGAGAAGGGATATAGTTTGAAGAGGAGGAAGATGATTGAGC
520 GAGAGTGAGGAAGGAGAAGAGGAAGGAGAAGGGATATATTTTGAGGAGGAGGAAGATGATTGAGC
64565298 TACGAGTTCTTTCTTTTTAAAGGACTGTAATTTATTTTAGGATAATTTTATTATTTTAGCAGTAG
585 TACGAGTTCTTTCTTTTTAAAGGACTGTAATTTATTTTAGGATAATTTTATTATTTTAGCAGTAG
* *
64565363 ATTGTTATTTGTTTTTGTGTTCTAAGTTTTCTGTGTAGAAACTCCACACGAAAGAAACACAACAA
650 ATTGTTATTTGTTTTTGTGTTCTAAGTTTTCTGTGTAGGAACTCCACATGAAAGAAACACAACAA
64565428 TTCA-ATGCTTTCAACAACAAATTGAATAGAGCACCCACCAATAGATTATGGAACTACCAAGATC
715 TTCAGA-GCTTTCAACAACAAATTGAATAGAGCACCCACCAATAGATTATGGAACTACCAAGATC
* * * *
64565492 AATCATGTAACTTTTTCGTTATCTTTTTAGTGTTACATATTGAGGAAAATGTGTTATATAAAATG
779 AATCATGTAACTTTTTCCTTATCTTTTTAGGGTTACACATTGAGGAAAATGTGTTATCTAAAATG
64565557 TGTGTTGGGGGTAACATAGAAAATTTGTTTTAATTTCTATGCCTTTTTTTTAAATTTTTATGGTC
844 TGTGTTGGGGGTAACATAGAAAA-TTGTTTTAATTTCTATG-CTTTTTTTT-AATTTTTATGGTC
*
64565622 AATCGTGTGCTTGAGCTTGTAGAAATACAAGTAATTGGTTAGGAACATTTATATAGGTTGATTGT
906 AATCGTGTGCTTGAGCTTGTAGAAATACAAGTAATTGGTTAGGAACATGTATATAGGTTGATTGT
*
64565687 ATTTACTACAAATTTTGCATGATA
971 ATTTACTATAAATTTTGCATGATA
64565711 GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
1 GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
* *
64565776 TTAAGCAATTGAACGTACCAGATGAAATAGAAAATACAGAGAAACGAGCATGCTACTATGTATGA
66 TTAAGCAATTGAATGTACCAGATGAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTATGA
64565841 TAAATTTTTGAATTTGTGATTGTTTGGTTGATTAAAATTTGTGAATAATGAGATACCTAGGGATG
131 TAAATTTTTGAATTTGTGATTGTTTGGTTG-----AA-TTGT-AATAAT-AGA-ACCT---G-T-
*
64565906 ACCTAGGGTATTATTTGGTATACACCCAGAGCCAAAAAGCTAACTCTATTTATTCATCCTTAGTA
182 A---A-GGTATTGTTTGGTATACACCCAGAGCCAAAAAGCTAACTCTATTTATTCATCCTTAGTA
64565971 CCTATATTTGAGCCAGAAAACATTTCTTGATGAACCTTCATACAAAACCCAATCCAAAAATGTTA
243 CCTATATTTGAGCCAGAAAACATTTCTTGATGAACCTTCATACAAAACCCAATCCAAAAATGTTA
*
64566036 ATTTGTATTTACCCTTTTCCTTGGTCCTGAATCGCACGACTATAGACGTCTAGCCATACGTGTTG
308 ATTTGTATTTACCCTTTTCCTTGGTCCTGAATCGCACGACTATAGACGTCTGGCCATACGTGTTG
*
64566101 AGGGTTAAGTAGATACATTACAATGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATATG
373 AGGGTTAAGTAGATACATTACGATGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATATG
64566166 ATATAGTGATTATA
438 ATATAGTGATTATA
64566180 TGTGAGCCAA
Statistics
Matches: 2205, Mismatches: 188, Indels: 145
0.87 0.07 0.06
Matches are distributed among these distances:
982 28 0.01
983 4 0.00
984 4 0.00
985 3 0.00
986 49 0.02
987 28 0.01
988 463 0.21
989 160 0.07
990 151 0.07
991 9 0.00
993 1 0.00
994 1 0.00
996 1 0.00
997 1 0.00
999 2 0.00
1000 4 0.00
1002 178 0.08
1003 185 0.08
1004 22 0.01
1005 344 0.16
1006 22 0.01
1007 2 0.00
1008 3 0.00
1009 1 0.00
1010 2 0.00
1011 1 0.00
1012 2 0.00
1014 2 0.00
1015 429 0.19
1016 24 0.01
1017 49 0.02
1018 17 0.01
1019 1 0.00
1020 12 0.01
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (994 bp):
GTAGATGATTTTAAATTTTTTATTACTAGACTACTAAGTTCTATATATTACACTATAAATAGGCA
TTAAGCAATTGAATGTACCAGATGAAATAGAAAATACAGGGAAACGAGCATGCTACTATGTATGA
TAAATTTTTGAATTTGTGATTGTTTGGTTGAATTGTAATAATAGAACCTGTAAGGTATTGTTTGG
TATACACCCAGAGCCAAAAAGCTAACTCTATTTATTCATCCTTAGTACCTATATTTGAGCCAGAA
AACATTTCTTGATGAACCTTCATACAAAACCCAATCCAAAAATGTTAATTTGTATTTACCCTTTT
CCTTGGTCCTGAATCGCACGACTATAGACGTCTGGCCATACGTGTTGAGGGTTAAGTAGATACAT
TACGATGGGTTTTGTAAAAATAGAGTGAAATAAGAAGGATCAATATGATATAGTGATTATAATAT
GATTGACCCAGTGCATCCTGAGCAAGAAGAAGAGGAGCAAGAAAGTGATGAAGAGGAAGAGTGCG
AGAGTGAGGAAGGAGAAGAGGAAGGAGAAGGGATATATTTTGAGGAGGAGGAAGATGATTGAGCT
ACGAGTTCTTTCTTTTTAAAGGACTGTAATTTATTTTAGGATAATTTTATTATTTTAGCAGTAGA
TTGTTATTTGTTTTTGTGTTCTAAGTTTTCTGTGTAGGAACTCCACATGAAAGAAACACAACAAT
TCAGAGCTTTCAACAACAAATTGAATAGAGCACCCACCAATAGATTATGGAACTACCAAGATCAA
TCATGTAACTTTTTCCTTATCTTTTTAGGGTTACACATTGAGGAAAATGTGTTATCTAAAATGTG
TGTTGGGGGTAACATAGAAAATTGTTTTAATTTCTATGCTTTTTTTTAATTTTTATGGTCAATCG
TGTGCTTGAGCTTGTAGAAATACAAGTAATTGGTTAGGAACATGTATATAGGTTGATTGTATTTA
CTATAAATTTTGCATGATA
Found at i:64574117 original size:26 final size:26
Alignment explanation
Indices: 64574086--64574139 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
64574076 TATACTTACC
*
64574086 TTTTAACATTAAATATGATATACAAT
1 TTTTAACATCAAATATGATATACAAT
64574112 TTTTAACATCAAATATGATATACAAT
1 TTTTAACATCAAATATGATATACAAT
64574138 TT
1 TT
64574140 CAAACATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (26 bp):
TTTTAACATCAAATATGATATACAAT
Found at i:64574145 original size:26 final size:26
Alignment explanation
Indices: 64574090--64574146 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
64574080 CTTACCTTTT
* **
64574090 AACATTAAATATGATATACAATTTTT
1 AACATCAAATATGATATACAATTTCA
64574116 AACATCAAATATGATATACAATTTCA
1 AACATCAAATATGATATACAATTTCA
64574142 AACAT
1 AACAT
64574147 ACTTGAATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.35
Consensus pattern (26 bp):
AACATCAAATATGATATACAATTTCA
Found at i:64574346 original size:42 final size:42
Alignment explanation
Indices: 64574281--64574411 Score: 165
Period size: 44 Copynumber: 3.0 Consensus size: 42
64574271 TTATACATGT
* * *
64574281 AATCAAGTATCGATGCCACTGTCCCAGACAGGGTCTTACACGA
1 AATCAAATAT-GATGCCAATGTCCCAGACATGGTCTTACACGA
*
64574324 AATCAAATATGATGCCAATGTCCCAGACATGGTCTTACATGTA
1 AATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACG-A
* *
64574367 AATCATAAGT-CGATGCCAACGTCCCAGACATGGTCTTACACGA
1 AATCA-AA-TATGATGCCAATGTCCCAGACATGGTCTTACACGA
64574410 AA
1 AA
64574412 ACACATATCA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
42 28 0.36
43 18 0.23
44 31 0.40
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (42 bp):
AATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGA
Found at i:64585088 original size:42 final size:42
Alignment explanation
Indices: 64584980--64585124 Score: 146
Period size: 43 Copynumber: 3.4 Consensus size: 42
64584970 AGCTCGTACA
* * * * *
64584980 ATGCCAAGGTCCCAGATGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGATATGGTCTTACAAGAAATCAAATA-CG
* * *
64585023 ATGCCACTGTCCCAAATAGGGTCTTACAAGAAATCAAATACG
1 ATGCCAATGTCCCAGATATGGTCTTACAAGAAATCAAATACG
* * **
64585065 ATGCCAATGTCCTAGATATGGTCTTACACGTAAATCATAAGCCG
1 ATGCCAATGTCCCAGATATGGTCTTACAAG-AAATCA-AATACG
*
64585109 ATGCCAACGTCCCAGA
1 ATGCCAATGTCCCAGA
64585125 CGTAGTCTTA
Statistics
Matches: 83, Mismatches: 17, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
42 26 0.31
43 39 0.47
44 18 0.22
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGATATGGTCTTACAAGAAATCAAATACG
Found at i:64589609 original size:17 final size:17
Alignment explanation
Indices: 64589587--64589623 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
64589577 GTGAACAGCC
64589587 TATGTGACTCACACGGT
1 TATGTGACTCACACGGT
*
64589604 TATGTGACTCACAGGGT
1 TATGTGACTCACACGGT
64589621 TAT
1 TAT
64589624 CAAACACACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (17 bp):
TATGTGACTCACACGGT
Found at i:64590948 original size:42 final size:43
Alignment explanation
Indices: 64590847--64590949 Score: 140
Period size: 43 Copynumber: 2.4 Consensus size: 43
64590837 AACTCGTACA
* *
64590847 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
64590890 ATGCCATTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCA-TGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
64590932 ATGCCGATGTCCCAGACA
1 ATGCC-ATGTCCCAGACA
64590950 TGCACGTAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
42 18 0.33
43 36 0.65
44 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCATGTCCCAGACAGTGGTCTTACACGAAATCAAATATCG
Found at i:64636142 original size:19 final size:19
Alignment explanation
Indices: 64636118--64636155 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
64636108 TGAAAGCTTG
64636118 GTGTTTAATATACATGTTT
1 GTGTTTAATATACATGTTT
64636137 GTGTTTAATATACATGTTT
1 GTGTTTAATATACATGTTT
64636156 TGTAAAGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (19 bp):
GTGTTTAATATACATGTTT
Found at i:64636757 original size:43 final size:42
Alignment explanation
Indices: 64636709--64636874 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 42
64636699 ATGGAGATGT
*
64636709 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTGTTTA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGT-TATA
* ** * * *
64636752 GATTACGTGTAAGACCATGTCCAGGACATCGGCATCGTTAATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTT-ATA
* * *
64636795 GATTTCGTGTAAGATCC-TGTCTGGGACAGTGGCATTGATATATA
1 GATTACATGTAAGA-CCATGTCTGGGACATTGGCATTG-T-TATA
* * * *
64636839 -ATAATATGTAAGACCATATCTGGGATA-TGGCATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
64636875 ACAAGCTTAT
Statistics
Matches: 98, Mismatches: 20, Indels: 12
0.75 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 11 0.11
43 80 0.82
44 5 0.05
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTTATA
Found at i:64639756 original size:42 final size:42
Alignment explanation
Indices: 64639709--64639909 Score: 165
Period size: 42 Copynumber: 4.6 Consensus size: 42
64639699 TAAGATGTGA
64639709 ATGCCATATACCAGATATGGTCTTACATGGGATCACATATCG
1 ATGCCATATACCAGATATGGTCTTACATGGGATCACATATCG
* * * *
64639751 ATGCCA-ATAGCCAGCTATGGTATTACATGATG-TCTCATATCG
1 ATGCCATATA-CCAGATATGGTCTTACATG-GGATCACATATCG
* * * * * ** *
64639793 ATGCCATGTTCCGGACATGGTCTTACACGAAATCACATATTG
1 ATGCCATATACCAGATATGGTCTTACATGGGATCACATATCG
*
64639835 ATGCCAATGCCATATCCCAGATATGGACTTACATGGGATCACATATCG
1 ATGCC-AT---ATA--CCAGATATGGTCTTACATGGGATCACATATCG
* *
64639883 AGGCCATAT-CTTAGATATGGTCTTACA
1 ATGCCATATAC-CAGATATGGTCTTACA
64639910 CGAAACCGCA
Statistics
Matches: 121, Mismatches: 27, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
41 4 0.03
42 79 0.65
43 4 0.03
44 2 0.02
46 1 0.01
47 2 0.02
48 29 0.24
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (42 bp):
ATGCCATATACCAGATATGGTCTTACATGGGATCACATATCG
Found at i:64663830 original size:26 final size:26
Alignment explanation
Indices: 64663797--64663856 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
64663787 CCCATGAAAC
*
64663797 CGCTCACGGTAGCTTCCACGATCAAA
1 CGCTCACGGTAGCCTCCACGATCAAA
* **
64663823 CGCTCACGTTTTCCTCCACGATCAAA
1 CGCTCACGGTAGCCTCCACGATCAAA
64663849 CGCTCACG
1 CGCTCACG
64663857 TTTTAGGCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.22
Consensus pattern (26 bp):
CGCTCACGGTAGCCTCCACGATCAAA
Found at i:64663857 original size:26 final size:26
Alignment explanation
Indices: 64663811--64663860 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
64663801 CACGGTAGCT
64663811 TCCACGATCAAACGCTCACGTTTTCC
1 TCCACGATCAAACGCTCACGTTTTCC
64663837 TCCACGATCAAACGCTCACGTTTT
1 TCCACGATCAAACGCTCACGTTTT
64663861 AGGCATTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (26 bp):
TCCACGATCAAACGCTCACGTTTTCC
Found at i:64667393 original size:12 final size:12
Alignment explanation
Indices: 64667376--64667410 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
64667366 CACACACACC
64667376 CGTGTGCTAGGT
1 CGTGTGCTAGGT
64667388 CGTGTGCTAGGT
1 CGTGTGCTAGGT
*
64667400 TGTGTGCTAGG
1 CGTGTGCTAGG
64667411 CCATTCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.43, T:0.34
Consensus pattern (12 bp):
CGTGTGCTAGGT
Found at i:64668537 original size:33 final size:33
Alignment explanation
Indices: 64668490--64668565 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
64668480 ATGTTCAAAC
*
64668490 TTCATA-ACTTCTTAAATTTAAATCTCGTAAGA
1 TTCATATACATCTTAAATTTAAATCTCGTAAGA
64668522 TTCATATACATCTTAAATTTAAATCTCGTAAGA
1 TTCATATACATCTTAAATTTAAATCTCGTAAGA
64668555 TTCATATACAT
1 TTCATATACAT
64668566 ACCTGAACCA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 6 0.14
33 36 0.86
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (33 bp):
TTCATATACATCTTAAATTTAAATCTCGTAAGA
Found at i:64668728 original size:40 final size:40
Alignment explanation
Indices: 64668626--64668890 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
64668616 ACTCAAATTC
* * **
64668626 TCGCACACTAAGTGACAATACATTGTCGAAGCTAT-TTTAA
1 TCGCACACTAAGTG-CAATACATAGCCGAAGCTATCTCGAA
*
64668666 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
1 --TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCGAA
*
64668708 TCGCACACTAAGTGCAATACATAGCTGAAGCTATCTCGAA
1 TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCGAA
* * * *
64668748 TCACACACTAAGTGCAGTATATAGCCGACGCTATCTCGAA
1 TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCGAA
* * *
64668788 TCGTACCCTAAGTGGC-ATACATAGGCGAAGCTATCTCGAA
1 TCGCACACTAAGT-GCAATACATAGCCGAAGCTATCTCGAA
* * * *
64668828 TCGCACACTAAGTGCCATAGATCGCCGAAGTTATCTCGAA
1 TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCGAA
* * *
64668868 TAGAACACTAAGTGCCATACATA
1 TCGCACACTAAGTGCAATACATA
64668891 ACTGAATTGT
Statistics
Matches: 191, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
39 2 0.01
40 153 0.80
41 19 0.10
42 17 0.09
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCGAA
Found at i:64673750 original size:24 final size:24
Alignment explanation
Indices: 64673723--64673772 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
64673713 TTCTTCAATT
64673723 TAAAGCTCGTATGATTCATATACA
1 TAAAGCTCGTATGATTCATATACA
*
64673747 TAAAGCTCGTATGATTTATATACA
1 TAAAGCTCGTATGATTCATATACA
64673771 TA
1 TA
64673773 CTTGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (24 bp):
TAAAGCTCGTATGATTCATATACA
Found at i:64673939 original size:40 final size:40
Alignment explanation
Indices: 64673835--64674022 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
64673825 CGAATTCTCT
* * * * *
64673835 CACACTAAGTGCAAATACATAGCCGAAGCTATTTTAATCTCG
1 CACACTAAGTGC-CATACATAGCCGAAGCTATCTCAA-ATAG
* *
64673877 AACACTAAGTGCAATACATAGCCGAAGCTATCTCAAATCA-
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAAT-AG
*
64673917 CACACTAAGTGCCATACGTAGCCGAAGCTATCTCAAATAG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
*
64673957 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATAG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
*
64673997 CACACTAAGTGCCATACATAACCGAA
1 CACACTAAGTGCCATACATAGCCGAA
64674023 TTGTCGTCAA
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 99 0.74
41 22 0.17
42 11 0.08
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATAG
Found at i:64696205 original size:40 final size:40
Alignment explanation
Indices: 64696149--64696310 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
64696139 ACGTAAATTA
* * *
64696149 TACCC-TGATTGCACTTATGCGACCCTATTTGTACTTCGG
1 TACCCTTGATTGCACTTACGTGACCCTATTTGTACTTCAG
* * * *
64696188 TACCCTTGATTGTACTTATGTGCCCCTGTTTGTACTTC-G
1 TACCCTTGATTGCACTTACGTGACCCTATTTGTACTTCAG
*
64696227 ATACCCCTT--TTGCACTTACGTGCCCCTATTTGTACTTCAG
1 -TA-CCCTTGATTGCACTTACGTGACCCTATTTGTACTTCAG
* * * *
64696267 TACCCCTAATTTCACTTACATGACCCTATTTGTACTTCAG
1 TACCCTTGATTGCACTTACGTGACCCTATTTGTACTTCAG
64696307 TACC
1 TACC
64696311 GCAGAATGCA
Statistics
Matches: 106, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
38 4 0.04
39 34 0.32
40 63 0.59
41 5 0.05
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (40 bp):
TACCCTTGATTGCACTTACGTGACCCTATTTGTACTTCAG
Found at i:64696274 original size:20 final size:20
Alignment explanation
Indices: 64696171--64696310 Score: 98
Period size: 20 Copynumber: 7.0 Consensus size: 20
64696161 ACTTATGCGA
*
64696171 CCCTATTTGTACTTCGGTAC
1 CCCTATTTGTACTTCAGTAC
* *
64696191 CCTTGA-TTGTACTT-ATGTGC
1 CCCT-ATTTGTACTTCA-GTAC
*
64696211 CCCTGTTTGTACTTC-GATAC
1 CCCTATTTGTACTTCAG-TAC
* *
64696231 CCCT-TTTGCACTT-ACGTGC
1 CCCTATTTGTACTTCA-GTAC
64696250 CCCTATTTGTACTTCAGTAC
1 CCCTATTTGTACTTCAGTAC
*
64696270 CCCTAATTT-CACTTACA-TGA-
1 CCCT-ATTTGTACTT-CAGT-AC
64696290 CCCTATTTGTACTTCAGTAC
1 CCCTATTTGTACTTCAGTAC
64696310 C
1 C
64696311 GCAGAATGCA
Statistics
Matches: 93, Mismatches: 12, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
19 22 0.24
20 62 0.67
21 9 0.10
ACGTcount: A:0.18, C:0.30, G:0.13, T:0.39
Consensus pattern (20 bp):
CCCTATTTGTACTTCAGTAC
Found at i:64696284 original size:79 final size:79
Alignment explanation
Indices: 64696157--64696304 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 79
64696147 TATACCCTGA
* * * * ** * *
64696157 TTGCACTTATGCGACCCTATTTGTACTTCGGTACCCTTGATTGTACTTATGTGCCCCTGTTTGTA
1 TTGCACTTACGCGACCCTATTTGTACTTCAGTACCCCTAATTGTACTTACATGACCCTATTTGTA
64696222 CTTCGATACCCCTT
66 CTTCGATACCCCTT
* *
64696236 TTGCACTTACGTGCCCCTATTTGTACTTCAGTACCCCTAATT-TCACTTACATGACCCTATTTGT
1 TTGCACTTACGCGACCCTATTTGTACTTCAGTACCCCTAATTGT-ACTTACATGACCCTATTTGT
64696300 ACTTC
65 ACTTC
64696305 AGTACCGCAG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 1 0.02
79 57 0.98
ACGTcount: A:0.18, C:0.29, G:0.14, T:0.40
Consensus pattern (79 bp):
TTGCACTTACGCGACCCTATTTGTACTTCAGTACCCCTAATTGTACTTACATGACCCTATTTGTA
CTTCGATACCCCTT
Found at i:64700011 original size:21 final size:21
Alignment explanation
Indices: 64699967--64700011 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
64699957 TTGCTTCTAC
* *
64699967 TGTTTAATCCTTGGGTTTGAA
1 TGTTTAATCCTTGGCTCTGAA
*
64699988 TGTTTAATCCTTGGCTCTGCA
1 TGTTTAATCCTTGGCTCTGAA
64700009 TGT
1 TGT
64700012 GTTCCAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.47
Consensus pattern (21 bp):
TGTTTAATCCTTGGCTCTGAA
Found at i:64709149 original size:18 final size:18
Alignment explanation
Indices: 64709126--64709161 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64709116 GAGACCTACC
64709126 AACCAGAGACAAGTTTAA
1 AACCAGAGACAAGTTTAA
64709144 AACCAGAGACAAGTTTAA
1 AACCAGAGACAAGTTTAA
64709162 CTCAGGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
AACCAGAGACAAGTTTAA
Found at i:64711988 original size:2 final size:2
Alignment explanation
Indices: 64711981--64712011 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
64711971 CTACTTGTAA
*
64711981 CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
64712012 ACTAACGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:64717503 original size:12 final size:13
Alignment explanation
Indices: 64717478--64717507 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
64717468 GCAAATATAT
64717478 CATTTCTCATTTC
1 CATTTCTCATTTC
64717491 CATTTCT-ATTTC
1 CATTTCTCATTTC
64717503 CATTT
1 CATTT
64717508 TAAGAAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.57
Consensus pattern (13 bp):
CATTTCTCATTTC
Found at i:64729612 original size:119 final size:120
Alignment explanation
Indices: 64729430--64729652 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
64729420 TCCTCGTTCA
*
64729430 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
64729495 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
64729550 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
64729612 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
64729653 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:64729652 original size:40 final size:40
Alignment explanation
Indices: 64729428--64729652 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
64729418 GCTCCTCGTT
* *
64729428 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64729468 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64729508 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64729548 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
64729587 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64729628 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64729653 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64737511 original size:119 final size:120
Alignment explanation
Indices: 64737329--64737551 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
64737319 TCCTCGTTCA
*
64737329 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
** *
64737394 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ACAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
64737449 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
64737511 ATACGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATACAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
64737552 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ACAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:64737551 original size:40 final size:40
Alignment explanation
Indices: 64737327--64737551 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
64737317 GCTCCTCGTT
* *
64737327 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64737367 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64737407 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
64737447 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* ** * *
64737486 CAAATGCCTTC-GGATCTTAGTCCGGATACGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64737527 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64737552 CATCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 118 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64760672 original size:40 final size:40
Alignment explanation
Indices: 64760448--64760672 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
64760438 GCTCCTCGTT
* *
64760448 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
64760488 CAAATACCTTCGGGACTTAACCCGGCTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64760528 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64760568 CCAATGCCTTCGGG-CTTAGCTCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
64760607 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64760648 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64760673 CATCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 113 0.72
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64768712 original size:55 final size:54
Alignment explanation
Indices: 64768617--64768766 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
64768607 CTACTTTGTT
* ** * *
64768617 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
64768671 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
64768726 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
64768767 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:64768729 original size:27 final size:27
Alignment explanation
Indices: 64768589--64768766 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
64768579 TAAATTGTAC
64768589 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
64768616 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
64768642 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
64768670 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
64768698 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
64768725 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
64768752 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64768767 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:64768730 original size:82 final size:81
Alignment explanation
Indices: 64768590--64768745 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
64768580 AAATTGTACA
* * * *
64768590 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
64768655 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
64768671 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
64768734 TGTGCGAGTTGA
63 TGTGCGAATTGA
64768746 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:64783147 original size:48 final size:48
Alignment explanation
Indices: 64783062--64783248 Score: 311
Period size: 48 Copynumber: 3.9 Consensus size: 48
64783052 GGTACAAGAT
* * *
64783062 AAATATGTGTGAGATATGTATATGTGGAAAAGTCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
64783110 AAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
64783158 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
64783206 AAATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTA
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
64783249 GTGATTCGGC
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:64783467 original size:37 final size:37
Alignment explanation
Indices: 64783416--64783523 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
64783406 AACTTGGAAA
*
64783416 TATATTCCGGGTAAGATCCGATGACTACGTGTGGAGAT
1 TATA-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
64783454 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
64783491 TTTGTCCGGGTAAGACCCGATAACTACGTGTGG
1 TATATCCGGGTAAGACCCGATGACTACGTGTGG
64783524 GGACTATTCG
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
37 62 0.94
38 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:64792337 original size:26 final size:25
Alignment explanation
Indices: 64792292--64792344 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
64792282 AACTAAGTTT
*
64792292 GGATAATATATATATATATATGTGA
1 GGATAATACATATATATATATGTGA
64792317 GGATATATACATATATATATATGTGA
1 GGATA-ATACATATATATATATGTGA
64792343 GG
1 GG
64792345 GAGGAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.38
Consensus pattern (25 bp):
GGATAATACATATATATATATGTGA
Found at i:64792349 original size:30 final size:32
Alignment explanation
Indices: 64792297--64792375 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 32
64792287 AGTTTGGATA
* * *
64792297 ATATATATATATAT-ATGTGAGGATATA-TAC-
1 ATATATATATATGTGA-GGGAGGAAATATTACG
*
64792327 ATATATATATATGTGAGGGAGGAAATATTCCG
1 ATATATATATATGTGAGGGAGGAAATATTACG
64792359 ATATATATATATG-GAGG
1 ATATATATATATGTGAGG
64792376 AAATATTCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 22 0.52
31 7 0.17
32 13 0.31
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (32 bp):
ATATATATATATGTGAGGGAGGAAATATTACG
Found at i:64793173 original size:4 final size:4
Alignment explanation
Indices: 64793164--64793196 Score: 57
Period size: 4 Copynumber: 8.0 Consensus size: 4
64793154 TACCTAAAAT
64793164 ATTA ATTA ATTA ATTA ATTA ATTA ATTTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA A-TTA ATTA
64793197 CTTTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:64806206 original size:26 final size:26
Alignment explanation
Indices: 64806175--64806226 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
64806165 ATTAATGAAC
*
64806175 ACAATATTTAATCAGTGCATGTTTAT
1 ACAATACTTAATCAGTGCATGTTTAT
*
64806201 ACAATACTTAATTAGTGCATGTTTAT
1 ACAATACTTAATCAGTGCATGTTTAT
64806227 TCTTCTAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (26 bp):
ACAATACTTAATCAGTGCATGTTTAT
Found at i:64815755 original size:114 final size:114
Alignment explanation
Indices: 64815554--64815781 Score: 366
Period size: 114 Copynumber: 2.0 Consensus size: 114
64815544 CATGGAGAAT
* * *
64815554 CCTTTCACAAATCTTCGGTAGTAACTGGCCAAGCCCAAAAATCTTCTAACCTCAGTTACATTTTT
1 CCTTTAACAAATCTTCGGTAGTAACCGGCCAAGCCCAAAAAGCTTCTAACCTCAGTTACATTTTT
* *
64815619 AGGTGGTTTCCATTCAATGATAGTAGAGATCTTACTTGGATCAACTCGA
66 AGGTGGTTTCCATTCAACGATAGCAGAGATCTTACTTGGATCAACTCGA
* * **
64815668 CCTTTAACAAATCTTCGGTAGTAACCGGCTAAGCCTAAAAAGCTTCTAACCTTGGTTACATTTTT
1 CCTTTAACAAATCTTCGGTAGTAACCGGCCAAGCCCAAAAAGCTTCTAACCTCAGTTACATTTTT
*
64815733 AGGTGGTTTGCATTCAACGATAGCAGAGATCTTACTTGGATCAACTCGA
66 AGGTGGTTTCCATTCAACGATAGCAGAGATCTTACTTGGATCAACTCGA
64815782 ATGCCATCAC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 104 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (114 bp):
CCTTTAACAAATCTTCGGTAGTAACCGGCCAAGCCCAAAAAGCTTCTAACCTCAGTTACATTTTT
AGGTGGTTTCCATTCAACGATAGCAGAGATCTTACTTGGATCAACTCGA
Found at i:64818799 original size:42 final size:42
Alignment explanation
Indices: 64818719--64818800 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
64818709 AGTGCAGGGG
* *
64818719 ACACATGGCCATACCACACGCCCATGGGGCGACTTGTGTGTC
1 ACACACGGCCATACCACACGCCCATGGGGCGACCTGTGTGTC
* * *
64818761 ACACACGGCC-TACACACACGCCCATGTGTCTACCTGTGTG
1 ACACACGGCCATAC-CACACGCCCATGGGGCGACCTGTGTG
64818801 AATCATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.09
42 31 0.91
ACGTcount: A:0.22, C:0.35, G:0.23, T:0.20
Consensus pattern (42 bp):
ACACACGGCCATACCACACGCCCATGGGGCGACCTGTGTGTC
Found at i:64825293 original size:47 final size:47
Alignment explanation
Indices: 64825230--64825655 Score: 674
Period size: 47 Copynumber: 9.1 Consensus size: 47
64825220 GAAATGATAG
* *
64825230 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64825277 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64825324 TAAGGCCTCATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64825371 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
64825418 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64825465 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64825512 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
64825559 TAAGGCCTAATGGTCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
64825605 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
64825652 TAAG
1 TAAG
64825656 TCCCGAAGGG
Statistics
Matches: 356, Mismatches: 22, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 39 0.11
47 317 0.89
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:64825830 original size:37 final size:37
Alignment explanation
Indices: 64825774--64825852 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64825764 CCGAGCTCTA
* * *
64825774 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64825811 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64825848 AAGAC
1 AAGAC
64825853 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64827754 original size:43 final size:43
Alignment explanation
Indices: 64827706--64827849 Score: 288
Period size: 43 Copynumber: 3.3 Consensus size: 43
64827696 GGTTTTCAGT
64827706 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
1 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
64827749 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
1 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
64827792 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
1 ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
64827835 ACTAAGTGTGCGGGC
1 ACTAAGTGTGCGGGC
64827850 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
ACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGC
Found at i:64827866 original size:29 final size:29
Alignment explanation
Indices: 64827831--64827904 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
64827821 GTTGTGAGAT
* *
64827831 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
64827860 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
64827889 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64827905 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:64828338 original size:40 final size:40
Alignment explanation
Indices: 64828294--64828450 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
64828284 GAGTTACTAA
*
64828294 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
64828334 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** *
64828374 ATCCGGGCTAAGTTCCGAAGAGCATTTGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
64828414 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
64828451 CGTGTATTCG
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:64831488 original size:40 final size:40
Alignment explanation
Indices: 64831404--64831628 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
64831394 TTGAATGATG
* * ** * *
64831404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACCATA
1 TCCGGGCTAAGTCTCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
64831444 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCTCGAAGGCATTTGTGCGAGTTACTAAA
* *
64831484 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
*
64831523 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
*
64831563 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTA-AA
* *
64831604 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCTCGAAGGCATTTG
64831629 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64831646 original size:80 final size:79
Alignment explanation
Indices: 64831458--64831651 Score: 207
Period size: 80 Copynumber: 2.5 Consensus size: 79
64831448 GACTAAGATT
** * *
64831458 CGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
* *
64831522 ATCCGGGTTAAGTCT
65 ATCCGGGCTAAGTCC
** * * *
64831537 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-
*
64831602 AA-CCGGGCTATGTCC
64 AATCCGGGCTAAGTCC
*
64831617 CGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
64831652 ATTCCGAAGG
Statistics
Matches: 100, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 40 0.40
80 57 0.57
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
TCCGGGCTAAGTCC
Found at i:64839444 original size:39 final size:40
Alignment explanation
Indices: 64839343--64839567 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
64839333 TTGAATGATG
* * ** * *
64839343 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGCGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
64839383 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64839423 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64839462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64839502 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64839542 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64839568 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 120 0.74
41 8 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64842984 original size:47 final size:47
Alignment explanation
Indices: 64842921--64843250 Score: 497
Period size: 47 Copynumber: 7.1 Consensus size: 47
64842911 GAAATGATAG
*
64842921 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
64842968 TAAGGCCTAATAGCCGATGTGATGAATGTGAAA--GTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64843013 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
64843060 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
64843107 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
64843154 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
64843200 CAGGGCC-AAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
64843247 TAAG
1 TAAG
64843251 TCCCGAAGGG
Statistics
Matches: 263, Mismatches: 16, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
45 47 0.18
46 38 0.14
47 178 0.68
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:64842990 original size:22 final size:22
Alignment explanation
Indices: 64842963--64843035 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
64842953 AGTGTATATG
64842963 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
* *** ***
64842985 TGTGATGAATGTGAAAGTATATG-
1 TGTGAT-AAGGCCTAA-TAGCCGA
64843008 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
64843030 TGTGAT
1 TGTGAT
64843036 GAATGTGAAA
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 3 0.09
22 17 0.50
23 11 0.32
24 3 0.09
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
TGTGATAAGGCCTAATAGCCGA
Found at i:64843078 original size:92 final size:93
Alignment explanation
Indices: 64842921--64843250 Score: 495
Period size: 92 Copynumber: 3.5 Consensus size: 93
64842911 GAAATGATAG
* *
64842921 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGAT
*
64842986 GTGATGAATGTGAAA-GTATATGTGTGA
66 GTGATGAATGTGAAAGGTATATATGTGA
* *
64843013 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGAT
*
64843078 GTGATGAATGTGAAAGTGTATATATGTAA
66 GTGATGAATGTGAAAG-GTATATATGTGA
*
64843107 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGAT
64843172 GTG-TGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAG-GTATATATGTGA
* * * * * *
64843200 CAGGGCC-AAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAG
64843251 TCCCGAAGGG
Statistics
Matches: 221, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
92 80 0.36
93 66 0.30
94 75 0.34
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (93 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGGTATATATGTGA
Found at i:64843425 original size:37 final size:37
Alignment explanation
Indices: 64843369--64843447 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64843359 CCGAGCTCTA
* * *
64843369 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64843406 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64843443 AAGAC
1 AAGAC
64843448 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64845608 original size:19 final size:19
Alignment explanation
Indices: 64845567--64845608 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
64845557 GTAAGGCAAT
*
64845567 TTTTTCTTCTAAATTTTAA
1 TTTTTATTCTAAATTTTAA
64845586 -TTTTATTC-AAATATTTAA
1 TTTTTATTCTAAAT-TTTAA
64845604 TTTTT
1 TTTTT
64845609 CAATTTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 4 0.20
18 12 0.60
19 4 0.20
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTATTCTAAATTTTAA
Found at i:64847482 original size:35 final size:35
Alignment explanation
Indices: 64847439--64847513 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
64847429 TACCATAAAT
64847439 TTTTAGTTCCTTACGAAAGTTAGGCGTGCAAGAAA
1 TTTTAGTTCCTTACGAAAGTTAGGCGTGCAAGAAA
64847474 TTTTAGTTCCTTACGAAAGTTAGGCGTGCAAGAAA
1 TTTTAGTTCCTTACGAAAGTTAGGCGTGCAAGAAA
*
64847509 GTTTA
1 TTTTA
64847514 AGTCTTTAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (35 bp):
TTTTAGTTCCTTACGAAAGTTAGGCGTGCAAGAAA
Found at i:64857087 original size:19 final size:17
Alignment explanation
Indices: 64857063--64857105 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
64857053 TGGGCCATTT
*
64857063 TGGGCCGAATAGGGCTATG
1 TGGGCCCAAT-GGGC-ATG
*
64857082 TGGGCCCAATGGGCCTG
1 TGGGCCCAATGGGCATG
64857099 TGGGCCC
1 TGGGCCC
64857106 CACACGAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.41
18 4 0.18
19 9 0.41
ACGTcount: A:0.14, C:0.26, G:0.42, T:0.19
Consensus pattern (17 bp):
TGGGCCCAATGGGCATG
Found at i:64858912 original size:92 final size:92
Alignment explanation
Indices: 64858786--64858955 Score: 270
Period size: 92 Copynumber: 1.8 Consensus size: 92
64858776 CCCATAAGTG
*
64858786 AACTCGGACTCAACTCAACAAGCTCGGGAGTTCGCATCCATAAGTGAACTGGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCGGGAATTCGCATCCATAAGTGAACTGGGACTCAACTCAAC
64858851 GAGCTCGGATGCCAGTTACATCTCTCA
66 GAGCTCGGATGCCAGTTACATCTCTCA
** * *
64858878 AACTCGGACTCAACTCAATGAGTTC-GGACATTCGCATCCATAAGTGAACTGGGACTCAACTCGA
1 AACTCGGACTCAACTCAACAAGCTCGGGA-ATTCGCATCCATAAGTGAACTGGGACTCAACTCAA
*
64858942 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
64858956 CAAATATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 3 0.04
92 68 0.96
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACAAGCTCGGGAATTCGCATCCATAAGTGAACTGGGACTCAACTCAAC
GAGCTCGGATGCCAGTTACATCTCTCA
Found at i:64858951 original size:46 final size:46
Alignment explanation
Indices: 64858777--64858951 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
64858767 TGTAACCCAC
* *
64858777 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGA-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* *
64858823 CCATAAGTGAACTGGGACTCAACTCAACGAGCTCGGATGCCAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---CA-TTCGCAT
* * *
64858872 CTC-TCA---AACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
64858915 CCATAAGTGAACTGGGACTCAACTCGACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
64858952 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 8 0.08
45 3 0.03
46 82 0.78
49 6 0.06
50 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:64860488 original size:34 final size:34
Alignment explanation
Indices: 64860426--64860546 Score: 147
Period size: 34 Copynumber: 3.6 Consensus size: 34
64860416 CTGATATTGT
* * *
64860426 AATGGGCTTAGGCCCA-ATTGATACTGTTACTGA
1 AATGGGCTCAGGCCCAGACTGCTACTGTTACTGA
*
64860459 AATGGGCTCAGGGCCAGACT-CTTACTGTTACTGA
1 AATGGGCTCAGGCCCAGACTGC-TACTGTTACTGA
* *
64860493 AATGGGCTCATGCCCAGACTGCTACTGTTACCGA
1 AATGGGCTCAGGCCCAGACTGCTACTGTTACTGA
* *
64860527 AATGGGCTAAGGCCCTGACT
1 AATGGGCTCAGGCCCAGACT
64860547 AAGACTGAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
33 14 0.19
34 60 0.80
35 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (34 bp):
AATGGGCTCAGGCCCAGACTGCTACTGTTACTGA
Found at i:64862914 original size:49 final size:49
Alignment explanation
Indices: 64862815--64862914 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
64862805 TCAATTTCTA
*
64862815 AAAACCTGGGGGTTATGGTTAAGAGTACTTCGAGCGAGATTACTATACT
1 AAAACCTGGGGGTTATGGTTAAGAGTACTTCGAGCGAGATTACTACACT
* *
64862864 AAAACCTGGGGGTTATGGTTGAGAGTACTTCGAGCGAGATTACTGCACT
1 AAAACCTGGGGGTTATGGTTAAGAGTACTTCGAGCGAGATTACTACACT
64862913 AA
1 AA
64862915 TTCCGTTAGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (49 bp):
AAAACCTGGGGGTTATGGTTAAGAGTACTTCGAGCGAGATTACTACACT
Found at i:64880513 original size:55 final size:55
Alignment explanation
Indices: 64880453--64880565 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 55
64880443 CGAGCCTGCC
* * * *
64880453 AAAACAACACGAGCGTACGACACGGCCGTGTGGAAGAACCGTGG-GAGAACCTGTT
1 AAAACAAAACGAGCGTACGACACGCCCGTGTGGAACAACCGTGGTCA-AACCTGTT
* * *
64880508 AAAACAAAACGGGCGTTCGACACGCCCGTGTGGAACACCCGTGGTCAAACCTGTT
1 AAAACAAAACGAGCGTACGACACGCCCGTGTGGAACAACCGTGGTCAAACCTGTT
64880563 AAA
1 AAA
64880566 TTAACACGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 49 0.98
56 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.27, T:0.14
Consensus pattern (55 bp):
AAAACAAAACGAGCGTACGACACGCCCGTGTGGAACAACCGTGGTCAAACCTGTT
Found at i:64886181 original size:30 final size:32
Alignment explanation
Indices: 64886105--64886187 Score: 113
Period size: 30 Copynumber: 2.8 Consensus size: 32
64886095 TCAATCTCAA
64886105 CATAT-AC-TGGGCCGAAGCCTTTGCATTATT
1 CATATCACTTGGGCCGAAGCCTTTGCATTATT
* *
64886135 CATGTCACTT-GGCCGAAGCCTTTTCATTA-T
1 CATATCACTTGGGCCGAAGCCTTTGCATTATT
64886165 CATATCA-TTGGGCCGAAGCCTTT
1 CATATCACTTGGGCCGAAGCCTTT
64886188 ACTGTAAATG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 2 0.04
30 24 0.51
31 20 0.43
32 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (32 bp):
CATATCACTTGGGCCGAAGCCTTTGCATTATT
Found at i:64886438 original size:25 final size:26
Alignment explanation
Indices: 64886410--64886479 Score: 99
Period size: 25 Copynumber: 2.7 Consensus size: 26
64886400 TCTTTTAATG
64886410 ACTGGGGCAAAGCCCTTTTT-GATAA
1 ACTGGGGCAAAGCCCTTTTTCGATAA
*
64886435 ACTGGGGCAAAG-CCTTTTTCGGTAA
1 ACTGGGGCAAAGCCCTTTTTCGATAA
*
64886460 ACTAGGGCGAAAGCCCTTTT
1 ACTGGGGC-AAAGCCCTTTT
64886480 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 7 0.17
25 23 0.57
26 4 0.10
27 6 0.15
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (26 bp):
ACTGGGGCAAAGCCCTTTTTCGATAA
Found at i:64891534 original size:6 final size:6
Alignment explanation
Indices: 64891504--64891597 Score: 66
Period size: 6 Copynumber: 15.3 Consensus size: 6
64891494 AAGAAACATT
* * * * *
64891504 ATCAGA ATTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACATA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
64891553 ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
64891598 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
5 3 0.05
6 56 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:64891563 original size:31 final size:31
Alignment explanation
Indices: 64891525--64891597 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
64891515 AATCAAAATG
* * *
64891525 AGAATCAGAATCAGAATCAGGTGACATAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
64891556 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
64891587 AAAATCAGAAT
1 AGAATCAGAAT
64891598 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:64892185 original size:28 final size:28
Alignment explanation
Indices: 64892092--64892201 Score: 145
Period size: 27 Copynumber: 4.0 Consensus size: 28
64892082 TCGATCAGTC
* * *
64892092 AACAGATA-TTGTGACAGAGTCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
* *
64892119 TACAGATA-TTGTGGCAGAGCCACCAG-
1 AACAGATATTTGTGGCATAGCCACCAGA
*
64892145 AACAGATATTTGTGGCATAACCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
64892173 AACAGATATTTGTGGCATAGCCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
64892201 A
1 A
64892202 CGCTTCCTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.09
27 39 0.53
28 28 0.38
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (28 bp):
AACAGATATTTGTGGCATAGCCACCAGA
Found at i:64892453 original size:27 final size:27
Alignment explanation
Indices: 64892424--64892748 Score: 481
Period size: 27 Copynumber: 12.0 Consensus size: 27
64892414 GGGGCAAAAT
* * *
64892424 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
*
64892451 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64892478 AGTAACTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64892505 AGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64892532 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64892559 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64892586 GGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64892613 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64892640 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64892667 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64892694 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64892721 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64892748 G
1 G
64892749 ATAACTTTCC
Statistics
Matches: 271, Mismatches: 26, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
26 2 0.01
27 269 0.99
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:64894290 original size:42 final size:42
Alignment explanation
Indices: 64894158--64894308 Score: 144
Period size: 42 Copynumber: 3.5 Consensus size: 42
64894148 CATACCAATG
* **
64894158 ATATACCCTAGATATGGTCTTACATG-GGATCTCGTATCGATGCC
1 ATAT-CCC-AGATATGGTCTTACATGAAG-TCTTATATCGATGCC
* * * * * *
64894202 AATAGCCCAGCTATGGTTTTATACGAAG-CTTCATATCGATGTC
1 -ATATCCCAGATATGGTCTTACATGAAGTCTT-ATATCGATGCC
* *
64894245 ATATCCTAGATATGGTCTTACATGAAGTCTTATATTGATGCC
1 ATATCCCAGATATGGTCTTACATGAAGTCTTATATCGATGCC
64894287 ATATCCCAGATATGGTCTTACA
1 ATATCCCAGATATGGTCTTACA
64894309 CGTAATCTTA
Statistics
Matches: 85, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 53 0.62
43 25 0.29
44 4 0.05
45 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (42 bp):
ATATCCCAGATATGGTCTTACATGAAGTCTTATATCGATGCC
Found at i:64899336 original size:40 final size:40
Alignment explanation
Indices: 64899238--64899500 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
64899228 TCCTCGTTCA
* * * * *
64899238 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
64899277 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64899317 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64899357 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64899397 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
64899437 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
64899477 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64899501 CAACATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64910067 original size:40 final size:40
Alignment explanation
Indices: 64909851--64910113 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
64909841 TCCTCGTTCA
* * * * *
64909851 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
64909890 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
64909930 AATGCCTTCGGGAATTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64909970 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64910010 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
64910050 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
64910090 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64910114 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64923887 original size:26 final size:26
Alignment explanation
Indices: 64923851--64923902 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
64923841 AGGCTCGAAG
**
64923851 CCCGATATCATTTCACTTGCATTATA
1 CCCGATATCATTTCACCGGCATTATA
64923877 CCCGATATCATTTCACCGGCATTATA
1 CCCGATATCATTTCACCGGCATTATA
64923903 GCCTGCTAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.35
Consensus pattern (26 bp):
CCCGATATCATTTCACCGGCATTATA
Found at i:64923958 original size:45 final size:45
Alignment explanation
Indices: 64923889--64924021 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
64923879 CGATATCATT
* *
64923889 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
64923934 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
64923979 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
64924022 CCGTACGTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:64934434 original size:46 final size:46
Alignment explanation
Indices: 64934384--64934559 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
64934374 TGGTTGAGCA
*
64934384 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
64934430 TCCGAACTTGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--C-G
* *
64934478 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
64934523 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64934560 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 61 0.58
47 26 0.25
48 4 0.04
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64937548 original size:14 final size:15
Alignment explanation
Indices: 64937499--64937548 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
64937489 GTATCTTGGG
*
64937499 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
64937514 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
64937529 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
64937543 TTTCTT
1 TTTCTT
64937549 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:64938600 original size:39 final size:39
Alignment explanation
Indices: 64938555--64938636 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
64938545 TAAGTGAAAG
64938555 TTTTTCGGCCCCGAATATGAGATTAAAAGTGAAGACCAC
1 TTTTTCGGCCCCGAATATGAGATTAAAAGTGAAGACCAC
64938594 TTTTTCGGCCCCGAATATGAGATTAAAAGTGAAGACCAC
1 TTTTTCGGCCCCGAATATGAGATTAAAAGTGAAGACCAC
64938633 TTTT
1 TTTT
64938637 CTGGTAAGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (39 bp):
TTTTTCGGCCCCGAATATGAGATTAAAAGTGAAGACCAC
Found at i:64940032 original size:46 final size:46
Alignment explanation
Indices: 64939982--64940153 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
64939972 TGAGCATCCA
* *
64939982 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCG
* * *
64940028 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CGTCCG
* * * *
64940075 AACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGTGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCG
* *
64940121 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64940154 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCG
Found at i:64940134 original size:93 final size:93
Alignment explanation
Indices: 64939975--64940146 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
64939965 GGATGGTTGA
* * *
64939975 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
64940040 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** *
64940068 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
64940133 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64940147 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64943568 original size:12 final size:12
Alignment explanation
Indices: 64943551--64943580 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
64943541 TCCGATAAGG
64943551 AACTGGGTGCCA
1 AACTGGGTGCCA
64943563 AACTGGGTGCCA
1 AACTGGGTGCCA
*
64943575 AGCTGG
1 AACTGG
64943581 TGTGTTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (12 bp):
AACTGGGTGCCA
Found at i:64944660 original size:48 final size:48
Alignment explanation
Indices: 64944589--64944838 Score: 256
Period size: 48 Copynumber: 5.2 Consensus size: 48
64944579 GGTAAATTTT
* * * * *
64944589 CGATGCCATGTCCCAAACATGGTCTTACATTGGCT-TACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCAAGGC
* *
64944637 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGC
* **
64944685 CGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAAGGC
* * * * * * *
64944733 CGATGGCATGTTCCAAAC-TGGTCTTACACTAGCACACATATCAACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGC
* * **
64944780 CGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAAGGC
64944828 CGATGCCATGT
1 CGATGCCATGT
64944839 GTAACAGCCC
Statistics
Matches: 164, Mismatches: 33, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
46 2 0.01
47 33 0.20
48 125 0.76
49 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAGGC
Found at i:64944795 original size:95 final size:96
Alignment explanation
Indices: 64944589--64944838 Score: 317
Period size: 95 Copynumber: 2.6 Consensus size: 96
64944579 GGTAAATTTT
* * * * *
64944589 CGATGCCATGTCCCAAACATGGTCTTACATTGGCT-TACAT-GTCGAGGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATGCCATGTCCCA
* * * * *
64944652 GACATGGTCTTACACTAGCTCTCATCTCAATGC
64 AACATGGTCTTACACTAGCACACATATCAACGC
* * *
64944685 CGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAATGTGGCCGATGGCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAAA
*
64944750 C-TGGTCTTACACTAGCACACATATCAACGT
66 CATGGTCTTACACTAGCACACATATCAACGC
* *
64944780 CGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGT
64944839 GTAACAGCCC
Statistics
Matches: 134, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
95 79 0.59
96 53 0.40
97 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAAA
CATGGTCTTACACTAGCACACATATCAACGC
Found at i:64945151 original size:9 final size:9
Alignment explanation
Indices: 64945137--64945162 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
64945127 AAAATGGACA
64945137 TGAAATAGG
1 TGAAATAGG
64945146 TGAAATAGG
1 TGAAATAGG
64945155 TGAAATAG
1 TGAAATAG
64945163 AATATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (9 bp):
TGAAATAGG
Found at i:64946135 original size:52 final size:50
Alignment explanation
Indices: 64946018--64946194 Score: 214
Period size: 52 Copynumber: 3.5 Consensus size: 50
64946008 ACTAGTGACT
* * * * *
64946018 CAAGTGTGGTACTATGTGAAAGCCACATTGAGAAG-AGATAGCTTGGTCA
1 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGTTTGGTCA
64946067 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGTTTTGGTCA
1 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAG-TTTGGTCA
* *
64946119 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAG-TTTGGTC-A
** *
64946170 CAAGGGTGGTACTATGTGTAGGCCA
1 CAAGTATGGTACTATGTGAAGGCCA
64946195 TCGGGTATCT
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 31 0.27
50 2 0.02
51 38 0.34
52 42 0.37
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.28
Consensus pattern (50 bp):
CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGTTTGGTCA
Found at i:64946194 original size:51 final size:51
Alignment explanation
Indices: 64946013--64946194 Score: 210
Period size: 51 Copynumber: 3.6 Consensus size: 51
64946003 ATGTCACTAG
* * * *
64946013 TGACT-CAAGTGTGGTACTATGTGAAAGCCACATTGAGAAG-AGATAGCTT
1 TGACTACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * *
64946062 GGTC-ACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGTTT
1 TGACTACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTT
* *
64946113 TG-GTCACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTT
1 TGACT-ACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
** *
64946164 TGACTACAAGGGTGGTACTATGTGTAGGCCA
1 TGACTACAAGTATGGTACTATGTGAAGGCCA
64946195 TCGGGTATCT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 33 0.29
51 42 0.38
52 37 0.33
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
Found at i:64948154 original size:137 final size:137
Alignment explanation
Indices: 64947916--64948239 Score: 418
Period size: 137 Copynumber: 2.4 Consensus size: 137
64947906 TTATCTTTGA
* * * * * * * * *
64947916 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCCTTTTC-TGTCATGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCATATCA-GGTGCCACGGTATCT
** * ***
64947980 TTCAACCATGGTCTTATTCATTTCATGTCACGATGCCATGGTATCTTTCAACCATGGTCTTATTT
64 TTCAACCATGGTCTTACACATTTCATATCACGATGCCATGGTATCTTTCAACCATGGTCTTACAC
*
64948045 ATTTCCCT-T
129 ATTT-CATAT
*
64948054 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGTGCCACGGTATCTTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTGCCACGGTATCTTT
* * *
64948119 CAACCATGGTCTTACACGTTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACAT
66 CAACCATGGTCTTACACATTTCATATCACGATGCCATGGTATCTTTCAACCATGGTCTTACACAT
64948184 TTCATAT
131 TTCATAT
*
64948191 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
64948240 AGAGCACACT
Statistics
Matches: 163, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
136 2 0.01
137 126 0.77
138 35 0.21
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (137 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTGCCACGGTATCTTT
CAACCATGGTCTTACACATTTCATATCACGATGCCATGGTATCTTTCAACCATGGTCTTACACAT
TTCATAT
Found at i:64948239 original size:46 final size:46
Alignment explanation
Indices: 64947921--64948239 Score: 410
Period size: 46 Copynumber: 7.0 Consensus size: 46
64947911 TTTGACATGA
* * * * * * *
64947921 TGCCATAGTGTCTTTCAACTATGGTCTTACTCCTTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCATATCAGGT
** * * *
64947967 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** * *
64948013 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCT-TCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCAGGT
*
64948059 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGG-
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
64948104 TGCCACGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
64948150 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
64948196 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
64948240 AGAGCACACT
Statistics
Matches: 247, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
45 51 0.21
46 194 0.79
47 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:64951354 original size:48 final size:48
Alignment explanation
Indices: 64951283--64951465 Score: 224
Period size: 48 Copynumber: 3.8 Consensus size: 48
64951273 GGGTGTTACA
* *
64951283 CCATGTCCCAGACATGGACTTACACTAGCACACATATCAACGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATG
* * * *** *
64951331 CCATGTCCCAGACATGGTCTTACACTATCTCTCATAAT-GTGGCCGATA
1 CCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGCCGATG
* * * **
64951379 CCATGTTCCAAACATTGTCTTACACTAGCATGCATATCAACGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATG
64951427 CCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 CCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
64951466 CCCAATTGCC
Statistics
Matches: 108, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
47 2 0.02
48 104 0.96
49 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATG
Found at i:64956450 original size:27 final size:27
Alignment explanation
Indices: 64956419--64956596 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
64956409 TATATTGAGC
* *
64956419 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
64956446 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
64956473 TGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
64956501 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
64956528 CGCACACTTAGTGC-ATCAT-ATACATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* * * *
64956555 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
64956582 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
64956597 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 96 0.79
28 24 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64956511 original size:55 final size:54
Alignment explanation
Indices: 64956419--64956596 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 54
64956409 TATATTGAGC
* * *
64956419 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATC-AATT
* * **
64956474 -GCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACATAATCAATT
** * * * *
64956528 CGCACACTTAGTGC-ATCAT-ATACATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAAT-CAACTCGCACACTTAGTGCCACATAATCAATT
*
64956582 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
64956597 GTACAATTTA
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
54 62 0.61
55 40 0.39
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAATT
Found at i:64973926 original size:52 final size:52
Alignment explanation
Indices: 64973863--64973966 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
64973853 AAAACAATAT
* *
64973863 AATTTGTATATTCGCAATTCAGGGCTTCAATTAGTAGAAGTAGAAAATAGTA
1 AATTTGCATATTCGCAATTCAGGGCTTCAATCAGTAGAAGTAGAAAATAGTA
64973915 AATTTGCATATTCGCAATTCAGGGCTTCAATCAGTAGAAGTAGAAAATAGTA
1 AATTTGCATATTCGCAATTCAGGGCTTCAATCAGTAGAAGTAGAAAATAGTA
64973967 TCATATGAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (52 bp):
AATTTGCATATTCGCAATTCAGGGCTTCAATCAGTAGAAGTAGAAAATAGTA
Found at i:64975129 original size:22 final size:22
Alignment explanation
Indices: 64975104--64975160 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
64975094 GGTGCAGGCT
64975104 CACACGCCTGTGTGGTCCAAGG
1 CACACGCCTGTGTGGTCCAAGG
* *
64975126 CACACGCCTATGTGGTTCAAGG
1 CACACGCCTGTGTGGTCCAAGG
* *
64975148 GACACGCCCGTGT
1 CACACGCCTGTGT
64975161 TGCAGACAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (22 bp):
CACACGCCTGTGTGGTCCAAGG
Found at i:64976744 original size:56 final size:56
Alignment explanation
Indices: 64976642--64976768 Score: 148
Period size: 56 Copynumber: 2.2 Consensus size: 56
64976632 TGTCTCCAAT
* * * * * * *
64976642 ATATGCTCACATGAACTTAATTAGGATTACTAGTCCAGGTTGAATCCT-TTCTGTAAC
1 ATATGCTCA-AAGAGCTCAATTAGGATTACTAGTACAGGATAAATCCTAAT-TGTAAC
64976699 ATATGCTCAAAGAGCTCAATTAGGATTACTAGTACAGGATAAATCCTAATTGTAAC
1 ATATGCTCAAAGAGCTCAATTAGGATTACTAGTACAGGATAAATCCTAATTGTAAC
* *
64976755 ATTTGCTCGAAGAG
1 ATATGCTCAAAGAG
64976769 ATTATATCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
56 50 0.83
57 10 0.17
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (56 bp):
ATATGCTCAAAGAGCTCAATTAGGATTACTAGTACAGGATAAATCCTAATTGTAAC
Found at i:64978160 original size:43 final size:44
Alignment explanation
Indices: 64978076--64978163 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 44
64978066 TCACACAAAC
*
64978076 TATTATCATACTATAGATTATAGAATAATATTAAAATAATTTTT
1 TATTATCATACTATAGATTATAAAATAATATTAAAATAATTTTT
64978120 TATTATCATACTATAGATTA-AAAATAATATTAAAATAATTTTT
1 TATTATCATACTATAGATTATAAAATAATATTAAAATAATTTTT
64978163 T
1 T
64978164 CTTTCTGAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 23 0.53
44 20 0.47
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (44 bp):
TATTATCATACTATAGATTATAAAATAATATTAAAATAATTTTT
Found at i:64981473 original size:19 final size:20
Alignment explanation
Indices: 64981449--64981486 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64981439 GGTACCACCA
64981449 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64981468 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64981487 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64981871 original size:93 final size:92
Alignment explanation
Indices: 64981713--64981882 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 92
64981703 CGCCCTAAGT
***
64981713 GAACTCGGACTCAACTCAACGAGCTGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
*
64981778 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGCTCGGATGCCTAGTTACATCTCAC
* * *
64981805 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCT-GGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64981870 CGAGCTCGGATGC
65 CGAGCTCGGATGC
64981883 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 24 0.34
93 46 0.66
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCAC
Found at i:64981872 original size:46 final size:46
Alignment explanation
Indices: 64981708--64981879 Score: 181
Period size: 45 Copynumber: 3.7 Consensus size: 46
64981698 TAACCCGCCC
*** *
64981708 TAAGTGAACTCGGACTCAACTCAACGAGCT-GGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
64981753 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
64981801 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
64981846 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
64981880 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 30 0.29
46 30 0.29
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:64989043 original size:19 final size:20
Alignment explanation
Indices: 64989019--64989056 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64989009 GGTACCACCA
64989019 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64989038 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64989057 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64989352 original size:46 final size:46
Alignment explanation
Indices: 64989285--64989455 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 46
64989275 CGCCCCTAAG
* * *
64989285 TGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
* * * **
64989331 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCATCCAT-AAA
* ** * *
64989378 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
64989424 TGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
64989456 CTCAACCATC
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 65 0.64
47 36 0.36
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
Found at i:64989396 original size:93 final size:93
Alignment explanation
Indices: 64989286--64989456 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
64989276 GCCCCTAAGT
***
64989286 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64989351 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
64989379 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64989444 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64989457 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64997179 original size:49 final size:47
Alignment explanation
Indices: 64997072--64997197 Score: 135
Period size: 49 Copynumber: 2.6 Consensus size: 47
64997062 TAAGATGCCA
* * * *
64997072 ATGCCATGTCTCAGACATGGTCTTACACTGGCTAGTATATTAAAGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGACTAGTATATCAAAGCCG
*** * *
64997120 ATGTTGTGTCCCAGACAGGTCTTACACTGACTTTCGTATATCAAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGAC--TAGTATATCAAAGCCG
*
64997169 ATGCCATGTCCCAGATAGGTCTTACACTG
1 ATGCCATGTCCCAGACAGGTCTTACACTG
64997198 GCTCTCATCT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
47 13 0.21
48 13 0.21
49 37 0.59
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (47 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTAGTATATCAAAGCCG
Found at i:65002511 original size:47 final size:47
Alignment explanation
Indices: 65002457--65002650 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
65002447 TTAGGATTTT
** * *
65002457 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65002504 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
65002551 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * **
65002598 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGATA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65002645 ATGTGA
1 ATGTGA
65002651 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:65002557 original size:22 final size:22
Alignment explanation
Indices: 65002486--65002604 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
65002476 GTATATATGA
65002486 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
65002508 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
65002533 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
65002555 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
65002580 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
65002602 GAT
1 GAT
65002605 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:65002684 original size:48 final size:47
Alignment explanation
Indices: 65002620--65002902 Score: 413
Period size: 48 Copynumber: 5.8 Consensus size: 47
65002610 TGAACATGCA
65002620 TATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATG
* *
65002668 CATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGATATG
* *
65002718 TATATGTGATAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATG
*
65002766 TATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGATATG
*
65002816 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATG
*
65002864 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTA
65002903 GGCGATGTGC
Statistics
Matches: 215, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
47 2 0.01
48 121 0.56
49 8 0.04
50 82 0.38
51 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (47 bp):
TATATGTGGTAAAGCCGAATGGTAATGTGAAATATGTATGAGATATG
Found at i:65002918 original size:98 final size:98
Alignment explanation
Indices: 65002620--65002899 Score: 499
Period size: 98 Copynumber: 2.9 Consensus size: 98
65002610 TGAACATGCA
* * *
65002620 TATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
65002685 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
*
65002718 TATATGTGATAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
65002783 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
65002816 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
65002881 AATGGAT-AGTGTGAAATAT
66 AATGG-TCAATGTGAAATAT
65002900 GTAGGCGATG
Statistics
Matches: 175, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
98 174 0.99
99 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATATGAGATATG
Found at i:65003157 original size:37 final size:37
Alignment explanation
Indices: 65003049--65003157 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
65003039 GGAAATACAT
*
65003049 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65003086 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65003123 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65003158 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65004791 original size:40 final size:40
Alignment explanation
Indices: 65004428--65004779 Score: 596
Period size: 40 Copynumber: 8.8 Consensus size: 40
65004418 GAGAATTGAG
65004428 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65004468 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
65004508 AGTGATATTTTCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65004548 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65004588 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65004628 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65004668 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65004708 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGTT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
65004748 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
65004780 ATCATGCTGG
Statistics
Matches: 293, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 293 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65008795 original size:47 final size:47
Alignment explanation
Indices: 65008741--65008934 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
65008731 TTAGGATTCT
** * *
65008741 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65008788 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
65008835 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * **
65008882 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGATA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65008929 ATGTGA
1 ATGTGA
65008935 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:65008841 original size:22 final size:22
Alignment explanation
Indices: 65008770--65008888 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
65008760 GTATATATGA
65008770 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
65008792 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
65008817 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
65008839 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
65008864 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
65008886 GAT
1 GAT
65008889 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:65008968 original size:48 final size:47
Alignment explanation
Indices: 65008904--65009186 Score: 413
Period size: 48 Copynumber: 5.8 Consensus size: 47
65008894 TGAACATGCA
65008904 TATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATG
* *
65008952 CATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGATATG
*
65009002 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATG
* *
65009050 TATATGTGGTAAAGCCGAATGGTCCATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGATATG
*
65009100 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATG
*
65009148 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTA
65009187 GGCGATGTGC
Statistics
Matches: 215, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
47 2 0.01
48 121 0.56
49 8 0.04
50 82 0.38
51 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (47 bp):
TATATGTGGTAAAGCCGAATGGTAATGTGAAATATGTATGAGATATG
Found at i:65009018 original size:98 final size:98
Alignment explanation
Indices: 65008904--65009183 Score: 499
Period size: 98 Copynumber: 2.9 Consensus size: 98
65008894 TGAACATGCA
* * *
65008904 TATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
65008969 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
65009002 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
65009067 AATGGTCCATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
65009100 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
65009165 AATGGAT-AGTGTGAAATAT
66 AATGG-TCAATGTGAAATAT
65009184 GTAGGCGATG
Statistics
Matches: 175, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
98 174 0.99
99 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATATGAGATATG
Found at i:65009441 original size:37 final size:37
Alignment explanation
Indices: 65009333--65009441 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
65009323 GGAAATACAT
* *
65009333 TCCGGGAAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65009370 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65009407 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65009442 CGTCTGAGAT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65012026 original size:32 final size:32
Alignment explanation
Indices: 65011982--65012042 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
65011972 TAAGTTATCT
**
65011982 GTTCTACCCGATTCAACCTGAAGAACATCTCC
1 GTTCTACCCGATTCAACCCAAAGAACATCTCC
*
65012014 GTTCTACTCGATTCAACCCAAAGAACATC
1 GTTCTACCCGATTCAACCCAAAGAACATC
65012043 CTCGTTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.31, C:0.33, G:0.11, T:0.25
Consensus pattern (32 bp):
GTTCTACCCGATTCAACCCAAAGAACATCTCC
Done.