Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 197 of 320
Found at i:65736113 original size:15 final size:16
Alignment explanation
Indices: 65736092--65736136 Score: 76
Period size: 15 Copynumber: 2.9 Consensus size: 16
65736082 TACGGTATCG
65736092 TATCTTGGATTTCTTC
1 TATCTTGGATTTCTTC
65736108 -ATCTTGGATTT-TTC
1 TATCTTGGATTTCTTC
65736122 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
65736137 TATTTTGGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.11
15 22 0.81
16 2 0.07
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (16 bp):
TATCTTGGATTTCTTC
Found at i:65736144 original size:15 final size:15
Alignment explanation
Indices: 65736092--65736144 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
65736082 TACGGTATCG
65736092 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
65736107 CATCTTGGATTT-TT
1 TATCTTGGATTTCTT
65736121 CTATCTTGGATTTCTT
1 -TATCTTGGATTTCTT
*
65736137 TATTTTGG
1 TATCTTGG
65736145 TCTTATTGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 2 0.06
15 29 0.88
16 2 0.06
ACGTcount: A:0.13, C:0.13, G:0.15, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:65739264 original size:51 final size:51
Alignment explanation
Indices: 65739180--65739290 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 51
65739170 CTGAGGTCGT
* * * *
65739180 GATATATGTAGCATCTGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGC
1 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGC
* *
65739231 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGT
1 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGC
*
65739282 GTTACATGT
1 GATACATGT
65739291 TACAAGGTAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGC
Found at i:65743020 original size:28 final size:28
Alignment explanation
Indices: 65742967--65743142 Score: 268
Period size: 28 Copynumber: 6.4 Consensus size: 28
65742957 GAGATTGGCG
* *
65742967 CTAAGTGTGCGA-ATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
65742994 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
65743022 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
65743050 CTAAGTGTGCGAG-TTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
* *
65743077 CTAAGTGTGCGAGTATGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
* *
65743105 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGACTATGTAGCA
*
65743132 CTGAGTGTGCG
1 CTAAGTGTGCG
65743143 GACTTAATAA
Statistics
Matches: 140, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
27 61 0.44
28 79 0.56
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:65743067 original size:55 final size:55
Alignment explanation
Indices: 65742967--65743142 Score: 273
Period size: 55 Copynumber: 3.2 Consensus size: 55
65742957 GAGATTGGCG
*
65742967 CTAAGTGTGCGA-ATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCA
*
65743022 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCA
* * * *
65743077 CTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCA
*
65743132 CTGAGTGTGCG
1 CTAAGTGTGCG
65743143 GACTTAATAA
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
55 87 0.77
56 26 0.23
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCA
Found at i:65743106 original size:83 final size:82
Alignment explanation
Indices: 65742967--65743142 Score: 280
Period size: 83 Copynumber: 2.1 Consensus size: 82
65742957 GAGATTGGCG
*
65742967 CTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGC
*
65743032 GAGTTTGACTATGTAGCA
66 GAG-TTGACTATATAGCA
* * *
65743050 CTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGC
*
65743115 GAGTTGATTATATAGCA
66 GAGTTGACTATATAGCA
*
65743132 CTGAGTGTGCG
1 CTAAGTGTGCG
65743143 GACTTAATAA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
82 22 0.26
83 64 0.74
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (82 bp):
CTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGC
GAGTTGACTATATAGCA
Found at i:65750292 original size:28 final size:27
Alignment explanation
Indices: 65750235--65750386 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
65750225 TAAATTGTGC
* *
65750235 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
65750262 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
65750290 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65750317 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
65750345 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65750372 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65750387 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:65750300 original size:55 final size:55
Alignment explanation
Indices: 65750235--65750386 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
65750225 TAAATTGTGC
* *
65750235 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
65750290 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
65750345 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
65750387 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:65758042 original size:46 final size:46
Alignment explanation
Indices: 65757935--65758247 Score: 160
Period size: 47 Copynumber: 6.7 Consensus size: 46
65757925 GCCACATTAT
* * * *
65757935 GAGAGCCAGTGTAAGACCATGTTCGGGACATAGCATCGGCGTTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAGAC
* * *
65757983 GAGTGCTAGTGTAAGACATGTTTGGGACATGTATCGACCTCGAGAC
1 GAGAGCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCGAGAC
* * * *
65758029 GTA-AGCCAGTGTAAGACATGTCTGGGACATGCATTG-GCTACGAGAT
1 G-AGAGCCAGTGTAAGACATGTTTGGGACATGCATCGACCT-CGAGAC
* * * * * *
65758075 G-CA-TCAGTGTAAGACCATGTCTGGGACATGGCATC-A-C-GGATATGT
1 GAGAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAGA--C
* * * * * *
65758120 GATAGCTAGTGTAAGACCATGTCTGGGACATGGCGTC-AGCTTCGATGAT
1 GAGAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGA-CCTCGA-GAC
* * *
65758169 GATAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGA-CTTGAGA-
1 GAGAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAGAC
* *
65758215 TATGAGCCAGTGTAAGACCATGTCTGGGACATG
1 GA-GAGCCAGTGTAAGA-CATGTTTGGGACATG
65758248 GCATTGGCAC
Statistics
Matches: 214, Mismatches: 35, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
43 3 0.01
44 10 0.05
45 20 0.09
46 54 0.25
47 72 0.34
48 17 0.08
49 34 0.16
50 3 0.01
51 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTTTGGGACATGCATCGACCTCGAGAC
Found at i:65758196 original size:49 final size:48
Alignment explanation
Indices: 65758035--65758251 Score: 222
Period size: 47 Copynumber: 4.6 Consensus size: 48
65758025 AGACGTAAGC
** * *
65758035 CAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTACGA-GATG-CA-T
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCT-TGATGATGATAGT
**
65758079 CAGTGTAAGACCATGTCTGGGACATGGCATCACGGAT-ATG-TGATAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCA-GCTTGATGATGATAGT
*
65758125 CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCTTCGATGATGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCTT-GATGATGATAGT
* *
65758175 CAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGA-GAT-ATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAG-CTTGATGATGAT-AGT
65758222 CAGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
65758252 TGGCACCTTA
Statistics
Matches: 147, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 11 0.07
47 65 0.44
48 6 0.04
49 37 0.25
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGATGATGATAGT
Found at i:65758196 original size:96 final size:93
Alignment explanation
Indices: 65757937--65758251 Score: 290
Period size: 96 Copynumber: 3.4 Consensus size: 93
65757927 CACATTATGA
* *
65757937 GAGCCAGTGTAAGACCATGT-TCGGGACATAGCATCGGCGTTGA-GACGAGTGC-T-AGTGTAAG
1 GAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCAGC--T-ACGA-GA-TGCATCAGTGTAAG
* * * **
65757998 A-CATGTTTGGGACAT-GTATCGACCTCGAGACGT
60 ACCATGTCTGGGACATGGCATCGA-CTGGAGATAT
* **
65758031 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTACGAGATGCATCAGTGTAAGACCATG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGATGCATCAGTGTAAGACCATG
* *
65758094 TCTGGGACATGGCATC-AC-GGATATGT
66 TCTGGGACATGGCATCGACTGGAGATAT
* * * *
65758120 GATAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCTTCGATGATGATAGTCAGTGTAAGA
1 G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGA-GATG-CA-TCAGTGTAAGA
* *
65758185 CCATGTTTGGGACATGGCATCGACTTGAGATAT
61 CCATGTCTGGGACATGGCATCGACTGGAGATAT
65758218 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
65758252 TGGCACCTTA
Statistics
Matches: 186, Mismatches: 20, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
88 3 0.02
89 9 0.05
90 13 0.07
91 26 0.14
92 25 0.13
93 21 0.11
94 18 0.10
95 1 0.01
96 62 0.33
97 2 0.01
98 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (93 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGATGCATCAGTGTAAGACCATG
TCTGGGACATGGCATCGACTGGAGATAT
Found at i:65765848 original size:49 final size:47
Alignment explanation
Indices: 65765638--65765909 Score: 209
Period size: 47 Copynumber: 5.7 Consensus size: 47
65765628 TACATTATGA
* * * *
65765638 GAGCCAGTGTAAGACCATAT-TCGGGACATGGCATCGACGTTGAGACAA
1 GAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGAC-TCGAGAGAT
* * *
65765686 GAGCTAGTGTAA-AACATGTCTGGGACAT-GCATCGGCT--ACGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGA-GAGAT
* * * * * * * *
65765730 GTGTCAATGGAAGTCCATGTCTAGCACATGGCATCAGCACT-GATATG-T
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTCGAGA-GAT
* *
65765778 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCGATGACGAT
1 --GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGA-GA-GAT
* *
65765830 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAGAT
*
65765876 GAGCCAGTGTAAAACCATGTCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
65765910 TGGCACCTTA
Statistics
Matches: 176, Mismatches: 33, Indels: 31
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 10 0.06
45 13 0.07
46 14 0.08
47 47 0.27
48 21 0.12
49 39 0.22
50 28 0.16
51 2 0.01
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAGAT
Found at i:65765899 original size:96 final size:94
Alignment explanation
Indices: 65765639--65765909 Score: 275
Period size: 96 Copynumber: 2.9 Consensus size: 94
65765629 ACATTATGAG
* * *
65765639 AGCCAGTGTAAGACCATAT-TCGGGACATGGCATCGACGTTGAGACAAGAGCTAGTGTAAAA-CA
1 AGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGAC-TTGAGATATGAGCTAGTGTAAAACCA
* *
65765702 TGTCTGGGACAT-GCATCGGCTACGAGATGT
64 TGTCTGGGACATGGCATCGCCTACGAGACGT
* * * * * * * * *
65765732 -GTCAATGGAAGTCCATGTCTAGCACATGGCATCAGCAC-TGATATGTGAGAGCTAGTGTAAGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGAGATAT--GAGCTAGTGTAAAAC
*
65765795 CATGTCTGGGACATGGCGTCGACCT-CGATGACGAT
62 CATGTCTGGGACATGGCATCG-CCTACGA-GACG-T
*
65765830 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAAACCATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCTAGTGTAAAACCATG
65765895 TCTGGGACATGGCAT
66 TCTGGGACATGGCAT
65765910 TGGCACCTTA
Statistics
Matches: 140, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
92 28 0.20
93 2 0.01
94 15 0.11
95 14 0.10
96 39 0.28
97 7 0.05
98 8 0.06
99 27 0.19
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCTAGTGTAAAACCATG
TCTGGGACATGGCATCGCCTACGAGACGT
Found at i:65771385 original size:23 final size:23
Alignment explanation
Indices: 65771343--65771449 Score: 107
Period size: 22 Copynumber: 4.7 Consensus size: 23
65771333 CTGATGAACA
*
65771343 GTAAGCTCTAAT-GAGTTGAAACG
1 GTAAGCTCT-ATCGAGCTGAAACG
* * *
65771366 ATAAGCTCTATCAAGCTG-AATG
1 GTAAGCTCTATCGAGCTGAAACG
65771388 GTAAGCTC-ATACGAGCTGAAACG
1 GTAAGCTCTAT-CGAGCTGAAACG
*
65771411 GTAAGCTCTATCGAGCTG-AACA
1 GTAAGCTCTATCGAGCTGAAACG
65771433 GTAAGCTC-ATACGAGCT
1 GTAAGCTCTAT-CGAGCT
65771450 AAAATATCAG
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
21 4 0.06
22 35 0.49
23 30 0.42
24 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (23 bp):
GTAAGCTCTATCGAGCTGAAACG
Found at i:65771393 original size:45 final size:45
Alignment explanation
Indices: 65771337--65771449 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
65771327 CTTGAGCTGA
* *
65771337 TGAACAGTAAGCTC-TAATGAGTTGAAACGATAAGCTCTATCAAGC
1 TGAACAGTAAGCTCAT-ACGAGCTGAAACGATAAGCTCTATCAAGC
** * *
65771382 TGAATGGTAAGCTCATACGAGCTGAAACGGTAAGCTCTATCGAGC
1 TGAACAGTAAGCTCATACGAGCTGAAACGATAAGCTCTATCAAGC
65771427 TGAACAGTAAGCTCATACGAGCT
1 TGAACAGTAAGCTCATACGAGCT
65771450 AAAATATCAG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (45 bp):
TGAACAGTAAGCTCATACGAGCTGAAACGATAAGCTCTATCAAGC
Found at i:65775098 original size:23 final size:22
Alignment explanation
Indices: 65775061--65775109 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
65775051 GATCTCAATT
*
65775061 CATAAATAAATTCATACCAAAA
1 CATAAATAAAATCATACCAAAA
*
65775083 CATAAACTAAAATCATACCTAAA
1 CATAAA-TAAAATCATACCAAAA
65775106 CATA
1 CATA
65775110 TGATCAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.22
Consensus pattern (22 bp):
CATAAATAAAATCATACCAAAA
Found at i:65775842 original size:42 final size:43
Alignment explanation
Indices: 65775786--65775907 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 43
65775776 TCAAACATCA
* * * * *
65775786 ATGCCACTATCCCAGACAGGGTCTTACACAAAATTA-AA-TATG
1 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCAGAAGT-CG
* *
65775828 ATGCCAATGTCCCAGACATGGTGTTACACATAAAACAGAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACA-AAATCAGAAGTCG
* *
65775872 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCA
65775908 CATAACGAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
42 26 0.39
43 9 0.14
44 30 0.45
45 1 0.02
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAAAATCAGAAGTCG
Found at i:65778353 original size:24 final size:24
Alignment explanation
Indices: 65778319--65778396 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 24
65778309 CATGACATTT
65778319 TGCTAAGTGAAATAAGACCATGGCA
1 TGCTAAGTGAAATAAG-CCATGGCA
* *
65778344 T-CTAAGTGAAATGAGTCCACGGCAA
1 TGCTAAGTGAAATAAG-CCATGGC-A
65778369 TGTGCTAAGTGAAATAAGCCAATGGCA
1 --TGCTAAGTGAAATAAGCC-ATGGCA
65778396 T
1 T
65778397 TGTGCTAAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
24 19 0.44
25 3 0.07
27 4 0.09
28 17 0.40
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (24 bp):
TGCTAAGTGAAATAAGCCATGGCA
Found at i:65778395 original size:28 final size:28
Alignment explanation
Indices: 65778319--65778406 Score: 96
Period size: 28 Copynumber: 3.3 Consensus size: 28
65778309 CATGACATTT
65778319 TGCTAAGTGAAATAAGACCATGGC-A--
1 TGCTAAGTGAAATAAGACCATGGCAATG
* * *
65778344 T-CTAAGTGAAATGAGTCCACGGCAATG
1 TGCTAAGTGAAATAAGACCATGGCAATG
*
65778371 TGCTAAGTGAAATAAG-CCAATGGCATTG
1 TGCTAAGTGAAATAAGACC-ATGGCAATG
65778399 TGCTAAGT
1 TGCTAAGT
65778407 CAGAAATTTC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 19 0.37
25 2 0.04
27 3 0.06
28 28 0.54
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (28 bp):
TGCTAAGTGAAATAAGACCATGGCAATG
Found at i:65778525 original size:49 final size:49
Alignment explanation
Indices: 65778431--65778581 Score: 160
Period size: 49 Copynumber: 3.0 Consensus size: 49
65778421 TTGAACATTA
* * * * *
65778431 TGAATAAA-ATAGCTTGGACACAAGTGTGGTACCATGTGAATGCCACTT
1 TGAAGAAAGATAGTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTT
* * *
65778479 TGAGGAGAGATAGTTTGGTCACAAGTGTAGTACTATGTGAAGGCCACTTT
1 TGAAGAAAGATAGTTTGGTCACAAGTGTGGTACTATGTGAAGGCCAC-TT
* * * *
65778529 GTGAAGAAAGACAGCTTTGGTTACAGGTGTGGTACTATGCGAAGGCCACTT
1 -TGAAGAAAGATAG-TTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTT
65778580 TG
1 TG
65778582 TGAATATGGT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
48 5 0.06
49 33 0.39
50 4 0.05
51 12 0.14
52 30 0.36
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (49 bp):
TGAAGAAAGATAGTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTT
Found at i:65778573 original size:52 final size:51
Alignment explanation
Indices: 65778444--65778585 Score: 171
Period size: 52 Copynumber: 2.8 Consensus size: 51
65778434 ATAAAATAGC
* * * * * *
65778444 TTGGACACAAGTGTGGTACCATGTGAATGCCAC-TT-TGAGGAGAGATAGT
1 TTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAGT
*
65778493 TTGGTCACAAGTGTAGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAGCT
1 TTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAG-T
* * *
65778545 TTGGTTACAGGTGTGGTACTATGCGAAGGCCACTTTGTGAA
1 TTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
65778586 TATGGTAGCT
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 29 0.37
50 2 0.03
51 10 0.13
52 38 0.48
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
TTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGACAGT
Found at i:65778617 original size:51 final size:52
Alignment explanation
Indices: 65778441--65778628 Score: 147
Period size: 51 Copynumber: 3.7 Consensus size: 52
65778431 TGAATAAAAT
* * * * * * *
65778441 AGCTTGGAC-ACAAGTGTGGTACCATGTGAATGCCAC-TT-TGAGGAGAGAT
1 AGCTTTGACTACAAGGGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGAC
* * *
65778490 AG-TTTG-GTCACAAGTGTAGTACTATGTGAAGGCCACTTTGTGAAGAAAGAC
1 AGCTTTGACT-ACAAGGGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGAC
** * * * **
65778541 AGCTTTGGTTAC-AGGTGTGGTACTATGCGAAGGCCACTTTGTGAA-TATGGT
1 AGCTTTGACTACAAGG-GTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGAC
*
65778592 AGCTTTGACTACAAGGGTGGTACTATGTGCAGGCCAC
1 AGCTTTGACTACAAGGGTGGTACTATGTGAAGGCCAC
65778629 CGAGTATCTG
Statistics
Matches: 111, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
48 3 0.03
49 26 0.23
50 2 0.02
51 43 0.39
52 36 0.32
53 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (52 bp):
AGCTTTGACTACAAGGGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGAC
Found at i:65788179 original size:30 final size:29
Alignment explanation
Indices: 65788113--65788201 Score: 119
Period size: 30 Copynumber: 3.1 Consensus size: 29
65788103 GTGAGCATGA
65788113 ATAT-AATGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
* *
65788141 ACATAAATGTGATTTGGGCCTAA-AGGGGTC
1 ATATAAATGTGATTTGGGCCTAATA--GGCC
*
65788171 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
65788200 AT
1 AT
65788202 GTGAATATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
28 4 0.08
29 23 0.44
30 25 0.48
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATAGGCC
Found at i:65791159 original size:11 final size:11
Alignment explanation
Indices: 65791143--65791172 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
65791133 TTAACCTTTC
65791143 TTATCTTTCCT
1 TTATCTTTCCT
65791154 TTATCTTTCCT
1 TTATCTTTCCT
65791165 TTATCTTT
1 TTATCTTT
65791173 TGCTACTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATCTTTCCT
Found at i:65795023 original size:72 final size:71
Alignment explanation
Indices: 65794903--65795042 Score: 208
Period size: 72 Copynumber: 2.0 Consensus size: 71
65794893 ACATATTGGC
* * * **
65794903 TAGGTAAAAGTACCATGAAGGCAATTGTATTAGGGGTTGGAATATATTTGGCTTCTTTTACTCAA
1 TAGGTAAAAGTACCATGAAGACAATTGTATTAGGGGTTAGAATATATTTGACCCCTTTTAC-CAA
65794968 AAAAGGT
65 AAAAGGT
* *
65794975 TAGGTAAAAGTACCATGAAGACCATTGTATTAGGGGTTAGAATGTATTTGACCCCTTTTACCAAA
1 TAGGTAAAAGTACCATGAAGACAATTGTATTAGGGGTTAGAATATATTTGACCCCTTTTACCAAA
65795040 AAA
66 AAA
65795043 CTGGGTAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
71 7 0.11
72 54 0.89
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (71 bp):
TAGGTAAAAGTACCATGAAGACAATTGTATTAGGGGTTAGAATATATTTGACCCCTTTTACCAAA
AAAGGT
Found at i:65797112 original size:19 final size:18
Alignment explanation
Indices: 65797083--65797123 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
65797073 TTTTTTTATA
65797083 TAAAAAATAAA-AATATTT
1 TAAAAAATAAACAA-ATTT
65797101 TAAAATAATAAACAAATTT
1 TAAAA-AATAAACAAATTT
65797120 TAAA
1 TAAA
65797124 GTTTAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
19 14 0.67
20 2 0.10
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAAAATAAACAAATTT
Found at i:65809304 original size:39 final size:40
Alignment explanation
Indices: 65809200--65809501 Score: 379
Period size: 39 Copynumber: 7.7 Consensus size: 40
65809190 TTGAATGATG
*
65809200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
65809239 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
65809280 TCCGGGCTAAG-CCCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
65809319 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
65809358 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
65809397 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
65809436 TCCGGGGTAAGTCCTGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
65809475 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65809502 AACGAGGAGC
Statistics
Matches: 235, Mismatches: 20, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
39 146 0.62
40 75 0.32
41 13 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:65813092 original size:28 final size:26
Alignment explanation
Indices: 65813061--65813124 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
65813051 AATTACTTGA
* *
65813061 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
65813089 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
65813115 ATACCCCTAG
1 ATACCCCTAG
65813125 GGTTACTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.70
27 1 0.03
28 9 0.27
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:65813260 original size:27 final size:26
Alignment explanation
Indices: 65813229--65813340 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
65813219 AGGAAGCGTC
*
65813229 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
65813256 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
** *
65813283 CTGGCAGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCT-GAT
* * *
65813311 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
65813337 CTGG
1 CTGG
65813341 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.69
28 15 0.21
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:65813304 original size:54 final size:54
Alignment explanation
Indices: 65813239--65813344 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
65813229 CTGGTGGCTA
*
65813239 TGCCACAATTATCT-GATCTGGTGGCTCTGCCACATATATCTGTTCTGGCAGCTC
1 TGCCACAATTATCTAGATCTGGTGACTCTGCCACAT-TATCTGTTCTGGCAGCTC
* * *
65813293 TGCCACGATTATCTATATCTGGTGACTCTGTCACATTATCTGTTCTGGCAGC
1 TGCCACAATTATCTAGATCTGGTGACTCTGCCACATTATCTGTTCTGGCAGC
65813345 CATGCTACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (54 bp):
TGCCACAATTATCTAGATCTGGTGACTCTGCCACATTATCTGTTCTGGCAGCTC
Found at i:65821112 original size:27 final size:26
Alignment explanation
Indices: 65821072--65821183 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
65821062 AGGAAGCGTC
*
65821072 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
65821099 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
65821126 CTGGGGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTG-AT
* * * *
65821154 CTTGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
65821180 CTGG
1 CTGG
65821184 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.09
27 50 0.71
28 14 0.20
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:65822231 original size:45 final size:45
Alignment explanation
Indices: 65822143--65822270 Score: 141
Period size: 45 Copynumber: 2.8 Consensus size: 45
65822133 ACTTTCGAAG
* * * * *
65822143 GATACCATAGCATCTTTCAACTATTGTTTTAATCCTTTTCATCAT
1 GATACCATAGCATCTTTCAACTATGGTCTTACTCATTTCCATCAT
* *
65822188 GATGCCATAGCGTCTTTCAA-TCATGGTCTTACTCATTTCCATCAT
1 GATACCATAGCATCTTTCAACT-ATGGTCTTACTCATTTCCATCAT
** * *
65822233 GATACCCCAGCATCTTTTAGCTATGGTCTTACTCATTT
1 GATACCATAGCATCTTTCAACTATGGTCTTACTCATTT
65822271 AGGCGTAAAG
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
44 1 0.01
45 66 0.97
46 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (45 bp):
GATACCATAGCATCTTTCAACTATGGTCTTACTCATTTCCATCAT
Found at i:65822529 original size:13 final size:13
Alignment explanation
Indices: 65822511--65822536 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65822501 CAATGTTAGT
65822511 CTCTCCTATCATA
1 CTCTCCTATCATA
65822524 CTCTCCTATCATA
1 CTCTCCTATCATA
65822537 TTATTCATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (13 bp):
CTCTCCTATCATA
Found at i:65826450 original size:30 final size:30
Alignment explanation
Indices: 65826414--65826484 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
65826404 GCCGTCACCA
* *
65826414 CCCTTTTCATAATTCAATATCCGAAGCTAT
1 CCCTTTTCATAATTCAATAACCGAAGCCAT
**
65826444 CCCTTTTCATAATTTGATAACCGAAGCCAT
1 CCCTTTTCATAATTCAATAACCGAAGCCAT
**
65826474 CATTTTTCATA
1 CCCTTTTCATA
65826485 GTTCGATAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
CCCTTTTCATAATTCAATAACCGAAGCCAT
Found at i:65826532 original size:30 final size:30
Alignment explanation
Indices: 65826498--65826561 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 30
65826488 CGATAGCCGA
*
65826498 TCATAATTTGATGGTCGTCACCATCCCTTT
1 TCATAAGTTGATGGTCGTCACCATCCCTTT
*
65826528 TCAT-AGTTGATGGTCGTCATCATCCCTTT
1 TCATAAGTTGATGGTCGTCACCATCCCTTT
65826557 TCATA
1 TCATA
65826562 TTTCGCTAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 27 0.87
30 4 0.13
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (30 bp):
TCATAAGTTGATGGTCGTCACCATCCCTTT
Found at i:65826541 original size:29 final size:29
Alignment explanation
Indices: 65826505--65826561 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
65826495 CGATCATAAT
65826505 TTGATGGTCGTCACCATCCCTTTTCATAG
1 TTGATGGTCGTCACCATCCCTTTTCATAG
*
65826534 TTGATGGTCGTCATCATCCCTTTTCATA
1 TTGATGGTCGTCACCATCCCTTTTCATA
65826562 TTTCGCTAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.40
Consensus pattern (29 bp):
TTGATGGTCGTCACCATCCCTTTTCATAG
Found at i:65828066 original size:20 final size:20
Alignment explanation
Indices: 65828043--65828080 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65828033 TCGCACTACG
* *
65828043 GTGCCCCTTTTTGCACATTT
1 GTGCCCCTGTGTGCACATTT
65828063 GTGCCCCTGTGTGCACAT
1 GTGCCCCTGTGTGCACAT
65828081 CACTGCTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.21, T:0.37
Consensus pattern (20 bp):
GTGCCCCTGTGTGCACATTT
Found at i:65829452 original size:31 final size:31
Alignment explanation
Indices: 65829417--65829488 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
65829407 TGGATATGGG
*
65829417 ACACGCCCGTGTGGGTAGGCCGTGTGGTCAC
1 ACACGCCCGTGTGGGCAGGCCGTGTGGTCAC
65829448 ACACGCCCGTGTGGGCAGGCCGTGTGGTCAC
1 ACACGCCCGTGTGGGCAGGCCGTGTGGTCAC
65829479 ACACGCCCGT
1 ACACGCCCGT
65829489 TTCCCAACCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.14, C:0.33, G:0.36, T:0.17
Consensus pattern (31 bp):
ACACGCCCGTGTGGGCAGGCCGTGTGGTCAC
Found at i:65829459 original size:18 final size:18
Alignment explanation
Indices: 65829436--65829488 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
65829426 TGTGGGTAGG
65829436 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACACGC
* *
65829454 CCGTGTGG----GCA-GG
1 CCGTGTGGTCACACACGC
65829467 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACACGC
65829485 CCGT
1 CCGT
65829489 TTCCCAACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 10
0.65 0.10 0.25
Matches are distributed among these distances:
13 9 0.35
14 2 0.08
17 2 0.08
18 13 0.50
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (18 bp):
CCGTGTGGTCACACACGC
Found at i:65829502 original size:31 final size:31
Alignment explanation
Indices: 65829436--65829503 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
65829426 TGTGGGTAGG
** **
65829436 CCGTGTGGTCACACACGCCCGTGTGGGCAGG
1 CCGTGTGGTCACACACGCCCGTGTGCCCACC
*
65829467 CCGTGTGGTCACACACGCCCGT-TTCCCAACC
1 CCGTGTGGTCACACACGCCCGTGTGCCC-ACC
65829498 CCGTGT
1 CCGTGT
65829504 AACTTTCTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 2 0.06
31 29 0.94
ACGTcount: A:0.13, C:0.38, G:0.29, T:0.19
Consensus pattern (31 bp):
CCGTGTGGTCACACACGCCCGTGTGCCCACC
Found at i:65847683 original size:44 final size:43
Alignment explanation
Indices: 65847545--65847698 Score: 152
Period size: 44 Copynumber: 3.6 Consensus size: 43
65847535 TTGTACAATA
* *
65847545 CCAACGTCCCAAACGTGGTCTTACATGT-AATCAAATATCGATG
1 CCAATGTCCCAAACATGGTCTTACATGTAAATCAAA-ATCGATG
* * *** * ** *
65847588 CCACTATCCCAGGTAGGGTCTTACA-CAAAATC-ATATACGATG
1 CCAATGTCCCAAACATGGTCTTACATGTAAATCAAAAT-CGATG
*
65847630 CCAATGTCCCAGACATGGTCTTACATGTAAATCACAAATCGATG
1 CCAATGTCCCAAACATGGTCTTACATGTAAATCA-AAATCGATG
65847674 CCAATGTCCCAAACATGGTCTTACA
1 CCAATGTCCCAAACATGGTCTTACA
65847699 CGATAACACA
Statistics
Matches: 86, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.02
42 26 0.30
43 26 0.30
44 29 0.34
45 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
CCAATGTCCCAAACATGGTCTTACATGTAAATCAAAATCGATG
Found at i:65847725 original size:44 final size:44
Alignment explanation
Indices: 65847630--65847725 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
65847620 ATATACGATG
* * **
65847630 CCAATGTCCCAGACATGGTCTTACATGTAAATCACAAATCGATG
1 CCAATGTCCCAAACATGGTCTTACACGTAAATCACAAATCGAAC
*
65847674 CCAATGTCCCAAACATGGTCTTACACG-ATAA-CACATATCGGAAC
1 CCAATGTCCCAAACATGGTCTTACACGTA-AATCACAAATC-GAAC
*
65847718 CCTATGTC
1 CCAATGTC
65847726 ATGACATATG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
43 8 0.18
44 36 0.82
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (44 bp):
CCAATGTCCCAAACATGGTCTTACACGTAAATCACAAATCGAAC
Found at i:65852892 original size:30 final size:29
Alignment explanation
Indices: 65852832--65852892 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
65852822 AATTTATGAT
* *
65852832 ATTTGGGGCAAAAATGTAAATATGTGAAA
1 ATTTGGGGCAAAAATGTAAATATCTCAAA
* * *
65852861 ATTTAGGGGCAAAATTGTAATTTTCTCAAA
1 ATTT-GGGGCAAAAATGTAAATATCTCAAA
65852891 AT
1 AT
65852893 ATGATTTTAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.33
Consensus pattern (29 bp):
ATTTGGGGCAAAAATGTAAATATCTCAAA
Found at i:65853352 original size:46 final size:46
Alignment explanation
Indices: 65853301--65853472 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
65853291 TGAGCATCCA
65853301 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCG
* * * * *
65853347 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GACGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATGC--CCG
* * *
65853394 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCG
* * *
65853440 AGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65853473 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 57 0.56
47 27 0.26
48 5 0.05
50 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCG
Found at i:65853453 original size:93 final size:93
Alignment explanation
Indices: 65853294--65853465 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
65853284 GGATATTTGA
* *
65853294 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAGT
65853359 TGAGTCCGAGTTCGTGAGACGTAACTAG
66 TGAGTCCGAGTTCGTGAGACGTAACTAG
* * * *
65853387 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAGCTTGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAGT
65853452 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65853466 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGACGTAACTAG
Found at i:65859583 original size:28 final size:28
Alignment explanation
Indices: 65859485--65859583 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
65859475 CATGAGATTG
* * **
65859485 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
65859514 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
65859542 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65859570 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
65859584 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 46 0.73
29 17 0.27
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65870662 original size:41 final size:41
Alignment explanation
Indices: 65870617--65870709 Score: 168
Period size: 41 Copynumber: 2.3 Consensus size: 41
65870607 TCTTGCTCGT
*
65870617 ACAAGCTGTCAGTCCAGACATAGCTATACGGTGGTGCTCAC
1 ACAAGCTGTCAGTCCAGACATAGCTATACGGTGCTGCTCAC
*
65870658 ACAAGCTGTCAGTCCAGACATAGCTATATGGTGCTGCTCAC
1 ACAAGCTGTCAGTCCAGACATAGCTATACGGTGCTGCTCAC
65870699 ACAAGCTGTCA
1 ACAAGCTGTCA
65870710 AGTAACCGCA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (41 bp):
ACAAGCTGTCAGTCCAGACATAGCTATACGGTGCTGCTCAC
Found at i:65874677 original size:19 final size:19
Alignment explanation
Indices: 65874653--65874691 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
65874643 TTGTGAAGTT
65874653 AAATTCAACTATTTCTAAA
1 AAATTCAACTATTTCTAAA
65874672 AAATTCAACTATTTCTAAA
1 AAATTCAACTATTTCTAAA
65874691 A
1 A
65874692 TCTTAAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATTCAACTATTTCTAAA
Found at i:65881977 original size:93 final size:93
Alignment explanation
Indices: 65881864--65882035 Score: 319
Period size: 93 Copynumber: 1.8 Consensus size: 93
65881854 CGCCCATAAG
65881864 CGAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
65881928 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
65881957 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65882022 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65882036 TCAACCATCC
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
93 75 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65882031 original size:46 final size:47
Alignment explanation
Indices: 65881857--65882032 Score: 229
Period size: 46 Copynumber: 3.8 Consensus size: 47
65881847 TGTAACCCGC
*
65881857 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
65881903 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
*
65881953 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
65881996 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65882033 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.54
47 31 0.27
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:65891615 original size:43 final size:43
Alignment explanation
Indices: 65891554--65891640 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
65891544 CTCTGGATTC
65891554 GAGCTATCTTTATAACACTATAAAACAGAGAACATTTCATACA
1 GAGCTATCTTTATAACACTATAAAACAGAGAACATTTCATACA
65891597 GAGCTATCTTTATAACACTATAAAACAGAGAACATTTCATACA
1 GAGCTATCTTTATAACACTATAAAACAGAGAACATTTCATACA
65891640 G
1 G
65891641 TAAGCTTTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (43 bp):
GAGCTATCTTTATAACACTATAAAACAGAGAACATTTCATACA
Found at i:65903482 original size:14 final size:14
Alignment explanation
Indices: 65903463--65903490 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65903453 TTTTCCAGAA
65903463 ACTCAAGCTTCTCT
1 ACTCAAGCTTCTCT
65903477 ACTCAAGCTTCTCT
1 ACTCAAGCTTCTCT
65903491 TTCAGCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.07, T:0.36
Consensus pattern (14 bp):
ACTCAAGCTTCTCT
Found at i:65910090 original size:25 final size:25
Alignment explanation
Indices: 65910061--65910108 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65910051 TTATAATATG
* * *
65910061 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
65910086 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
65910109 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:65910159 original size:9 final size:9
Alignment explanation
Indices: 65910147--65910203 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
65910137 TTTGATAAAC
65910147 ATGATATGT
1 ATGATATGT
*
65910156 ATGATATGCAC
1 ATGATATG--T
*
65910167 ATGACATGT
1 ATGATATGT
*
65910176 ATGATATGCAC
1 ATGATATG--T
65910187 ATGATATGT
1 ATGATATGT
65910196 ATGATATG
1 ATGATATG
65910204 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:65910170 original size:20 final size:20
Alignment explanation
Indices: 65910145--65910207 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
65910135 ATTTTGATAA
65910145 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
65910165 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
65910185 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
65910205 ACA
1 ACA
65910208 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:65910286 original size:24 final size:24
Alignment explanation
Indices: 65910259--65910402 Score: 179
Period size: 24 Copynumber: 6.0 Consensus size: 24
65910249 GGAGGAAGTG
*
65910259 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65910283 CAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65910307 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65910331 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
65910355 AAAAAGGGCTT-TGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65910377 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
65910403 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
23 27 0.25
24 63 0.59
25 16 0.15
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:65910351 original size:47 final size:48
Alignment explanation
Indices: 65910259--65910381 Score: 178
Period size: 47 Copynumber: 2.6 Consensus size: 48
65910249 GGAGGAAGTG
* * *
65910259 CAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCTCAGTTA-T
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
65910307 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
65910355 AAAAAGGGCTT-TGCCCCAGTTACTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
65910382 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
47 35 0.51
48 34 0.49
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (48 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:65910633 original size:31 final size:31
Alignment explanation
Indices: 65910595--65910658 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
65910585 CGTTTACAGT
65910595 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
65910626 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
65910657 AA
1 AA
65910659 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:65913380 original size:40 final size:40
Alignment explanation
Indices: 65913336--65913558 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 40
65913326 GCTCCTCGTT
*
65913336 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
65913376 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
* *
65913416 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCA
*
65913456 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
65913495 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
65913536 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
65913559 ACAGAATTCA
Statistics
Matches: 161, Mismatches: 12, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
38 3 0.02
39 44 0.27
40 105 0.65
41 8 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:65913520 original size:79 final size:80
Alignment explanation
Indices: 65913336--65913559 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
65913326 GCTCCTCGTT
* * *
65913336 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
65913400 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
65913416 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
65913480 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
65913495 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
65913556 CGGA
63 CGGA
65913560 CAGAATTCAA
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 12 0.09
79 60 0.47
80 55 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:65918036 original size:37 final size:37
Alignment explanation
Indices: 65917986--65918064 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65917976 TTATTACGAA
* * *
65917986 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65918023 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65918060 GTCTT
1 GTCTT
65918065 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65918261 original size:47 final size:47
Alignment explanation
Indices: 65918183--65918724 Score: 769
Period size: 47 Copynumber: 11.1 Consensus size: 47
65918173 CCCTTCGGGA
* * * * * *
65918183 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65918230 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65918277 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65918324 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65918371 CTTACCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65918418 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65918465 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65918516 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65918563 CTTATCACATATATATATACACTTTCACATTACTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATAT--A----CAC--T--TTCACATTCATCACATCGGCCATTAGGC
65918624 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65918672 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65918721 CTTA
1 CTTA
65918725 CTATCATTTC
Statistics
Matches: 452, Mismatches: 24, Indels: 36
0.88 0.05 0.07
Matches are distributed among these distances:
47 270 0.60
48 36 0.08
49 43 0.10
50 1 0.00
51 51 0.11
52 3 0.01
53 1 0.00
56 1 0.00
57 3 0.01
58 6 0.01
59 1 0.00
61 36 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65918630 original size:61 final size:58
Alignment explanation
Indices: 65918535--65918708 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 58
65918525 TATATACACT
65918535 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTAC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATT-C
65918596 TTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT--A----CAC--T-
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
65918644 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
*
65918702 ATCACAT
1 TTCACAT
65918709 CGGCCATTAG
Statistics
Matches: 102, Mismatches: 1, Indels: 23
0.81 0.01 0.18
Matches are distributed among these distances:
48 37 0.36
49 6 0.06
50 1 0.01
51 1 0.01
52 3 0.03
55 3 0.03
56 1 0.01
57 1 0.01
58 12 0.12
59 1 0.01
61 36 0.35
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (58 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
Found at i:65918651 original size:48 final size:49
Alignment explanation
Indices: 65918596--65918724 Score: 251
Period size: 49 Copynumber: 2.7 Consensus size: 49
65918586 TTCACATTAC
65918596 TTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
65918644 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
65918693 TTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTCACATTCATCACATCGGCCATTAGGCCTTA
65918725 CTATCATTTC
Statistics
Matches: 80, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
48 37 0.46
49 43 0.54
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
Found at i:65918678 original size:109 final size:105
Alignment explanation
Indices: 65918390--65918708 Score: 517
Period size: 98 Copynumber: 3.1 Consensus size: 105
65918380 TATATACACT
*
65918390 TTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCG
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
65918455 GCCATTAGGCCTTATCACATATATAT--A---T-ACACT-
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTC
*
65918488 TTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCG
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
65918553 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTAC
66 GCCATTAGGCCTTATCAC--ATATATATACACTTTCACATT-C
65918596 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATC
65918661 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
65 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
*
65918702 ATCACAT
1 TTCACAT
65918709 CGGCCATTAG
Statistics
Matches: 207, Mismatches: 3, Indels: 14
0.92 0.01 0.06
Matches are distributed among these distances:
98 83 0.40
100 8 0.04
102 1 0.00
105 1 0.00
106 11 0.05
107 21 0.10
108 36 0.17
109 46 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (105 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATATACACTTTCACATTC
Found at i:65922222 original size:40 final size:40
Alignment explanation
Indices: 65922177--65922413 Score: 348
Period size: 40 Copynumber: 5.9 Consensus size: 40
65922167 CGAATACACG
* * * *
65922177 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
65922217 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
65922257 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
65922297 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
65922337 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
65922377 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
65922414 TTAGTATCTC
Statistics
Matches: 181, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:65922327 original size:80 final size:80
Alignment explanation
Indices: 65922190--65922492 Score: 344
Period size: 80 Copynumber: 3.8 Consensus size: 80
65922180 CCAGCATGAT
* * * * * * ** *
65922190 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
65922255 TATCACTAGCACGAA
66 TATCACTAGCACGAA
*
65922270 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
* *
65922335 CATCACTAGCATGAA
66 TATCACTAGCACGAA
* *
65922350 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
* *
65922415 TAGT-ATCTCGCACAAA
66 TA-TCA-CTAGCACGAA
* * ** * *
65922431 TGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
65922493 CATCATTCGA
Statistics
Matches: 193, Mismatches: 26, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
80 169 0.88
81 19 0.10
82 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
TATCACTAGCACGAA
Found at i:65922438 original size:40 final size:41
Alignment explanation
Indices: 65922190--65922492 Score: 302
Period size: 40 Copynumber: 7.6 Consensus size: 41
65922180 CCAGCATGAT
* * * *
65922190 TGCTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
** * *
65922230 TGCTCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
* * **
65922270 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
* * **
65922310 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
* **
65922350 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
* *
65922390 TGCTCTTCGGGACTTAGCCCGGATTTAGT-ATCTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCA-CTAGCACAAA
* *
65922431 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAA
65922472 -GC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
65922493 CATCATTCGA
Statistics
Matches: 234, Mismatches: 23, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.01
40 208 0.89
41 23 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
Found at i:65922438 original size:120 final size:119
Alignment explanation
Indices: 65922190--65922492 Score: 333
Period size: 120 Copynumber: 2.5 Consensus size: 119
65922180 CCAGCATGAT
* * * * * ** *
65922190 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATA
* **
65922255 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
65 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACAAA
65922310 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATA
* * ** *
65922375 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGT-ATCTCGCACAAA
65 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TCA-CTAGCACAAA
* * ** * *
65922431 TGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCAGAATGCTCTTCGGGACTTAGCCCGGA
65922493 CATCATTCGA
Statistics
Matches: 156, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
120 132 0.85
121 19 0.12
122 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAGAATGCTCTTCGGGACTTAGCCCGGATAC
ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACAAA
Found at i:65922837 original size:29 final size:29
Alignment explanation
Indices: 65922798--65922876 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
65922788 CTTAATAATC
*
65922798 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
65922828 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
65922857 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
65922877 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:65922919 original size:43 final size:43
Alignment explanation
Indices: 65922858--65922960 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
65922848 TGCATTTCAA
65922858 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65922901 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
65922944 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
65922961 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:65924888 original size:37 final size:37
Alignment explanation
Indices: 65924827--65924905 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
65924817 TTATTACGAA
* * *
65924827 GTCTTACCCGAACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
* * *
65924864 GTCTTACCCGGACAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
65924901 GTCTT
1 GTCTT
65924906 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
Found at i:65925423 original size:51 final size:49
Alignment explanation
Indices: 65925024--65925705 Score: 1045
Period size: 47 Copynumber: 14.1 Consensus size: 49
65925014 CCCTTCGGGA
* * * * *
65925024 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65925071 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925118 CTTATCAC--ATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925165 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925214 CTTATCTC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925261 CTTATCACGTATATA-A-ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925308 CTTA-C-CTTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925355 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65925402 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65925453 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925504 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65925551 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65925600 CTTATCACATATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65925651 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65925702 CTTA
1 CTTA
65925706 CTATCATTTC
Statistics
Matches: 595, Mismatches: 22, Indels: 32
0.92 0.03 0.05
Matches are distributed among these distances:
45 7 0.01
46 3 0.01
47 296 0.50
48 2 0.00
49 96 0.16
51 191 0.32
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65928448 original size:13 final size:13
Alignment explanation
Indices: 65928430--65928454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65928420 CTTGGTAGGG
65928430 ACACGCCCGTGTA
1 ACACGCCCGTGTA
65928443 ACACGCCCGTGT
1 ACACGCCCGTGT
65928455 GCGATTACTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:65928560 original size:13 final size:13
Alignment explanation
Indices: 65928542--65928583 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
65928532 GCTGCCAAAT
*
65928542 TGACACGGCCGTG
1 TGACACGCCCGTG
65928555 TGACACGCCCGTG
1 TGACACGCCCGTG
65928568 TGACACGCCCGTG
1 TGACACGCCCGTG
65928581 TGA
1 TGA
65928584 GGAAGTCTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (13 bp):
TGACACGCCCGTG
Found at i:65938380 original size:29 final size:29
Alignment explanation
Indices: 65938345--65938418 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
65938335 GTTGTGAGAT
* *
65938345 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
65938374 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
65938403 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65938419 TGATTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:65954553 original size:40 final size:40
Alignment explanation
Indices: 65954471--65954691 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
65954461 ACCCAAGTAT
** * *
65954471 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
65954509 CTTCGGGTCTTAGCCCGAATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
65954549 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
65954589 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
65954629 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
65954670 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
65954692 CATTCGAATA
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 14 0.09
40 96 0.64
41 29 0.19
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:65962556 original size:40 final size:40
Alignment explanation
Indices: 65962511--65962695 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
65962501 ACTCGACAAG
* * *
65962511 GCCTTCGGGTCTTAGCCCGGATATGGTCGCTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
65962551 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
65962591 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
65962631 GCCTTCGGATCTTAGTCTGGATATAATCACTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
* *
65962672 GCCTTCGGGACTTAGCCCGAATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
65962696 CATTCGAATA
Statistics
Matches: 121, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 94 0.78
41 27 0.22
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:65966275 original size:27 final size:27
Alignment explanation
Indices: 65966245--65966421 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 27
65966235 AAATTGTACA
* *
65966245 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* ** *
65966272 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * * *
65966299 GCACTAAGTGCGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
*
65966326 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* * *
65966354 GCACTAAGTGTGCGATTCGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * * *
65966381 GCACTAAGCGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
65966408 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
65966422 GGCTCAATAT
Statistics
Matches: 119, Mismatches: 28, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
27 95 0.80
28 24 0.20
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:65979549 original size:25 final size:25
Alignment explanation
Indices: 65979520--65979567 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65979510 TTAAAACATG
** *
65979520 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
65979545 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
65979568 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:65979743 original size:26 final size:25
Alignment explanation
Indices: 65979698--65979768 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
65979688 GAGGAAGTGC
* *
65979698 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTGACCA
* *
65979723 AAAAGGGCTTTTGCCCCAGTTGATCA
1 AAAAGGGC-TTTGCCCTAGTTGACCA
65979749 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
65979769 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.47
26 21 0.52
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTGACCA
Found at i:65980026 original size:31 final size:31
Alignment explanation
Indices: 65979988--65980071 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
65979978 TTGGTACAGT
65979988 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
65980019 AAAGGCTTTGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
65980050 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
65980072 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:65990573 original size:25 final size:25
Alignment explanation
Indices: 65990544--65990591 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65990534 TTATAACATG
* * *
65990544 AAAATGATTGTTTTGCCCCTAGGTA
1 AAAATGACTATTTTACCCCTAGGTA
65990569 AAAATGACTATTTTACCCCTAGG
1 AAAATGACTATTTTACCCCTAGG
65990592 GTTTAACTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (25 bp):
AAAATGACTATTTTACCCCTAGGTA
Found at i:65990679 original size:18 final size:19
Alignment explanation
Indices: 65990642--65990679 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
65990632 GATTTGATAC
65990642 GATATGCACATGTTATGTAT
1 GATATGCACATG-TATGTAT
65990662 GATATGCACATG-ATGTAT
1 GATATGCACATGTATGTAT
65990680 TCATTTATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (19 bp):
GATATGCACATGTATGTAT
Found at i:65990767 original size:26 final size:24
Alignment explanation
Indices: 65990721--65990792 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 24
65990711 GGAGGAAGTG
* *
65990721 CAAAACGGCTTTGCCCTAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAC
*
65990745 CGAAAAGGGCTTTTGCCCCAGTTTAT
1 C-AAAAGGGC-TTTGCCCCAGTTTAC
65990771 CAAAACGGGCTTTGCCCCAGTT
1 CAAAA-GGGCTTTGCCCCAGTT
65990793 ATTAAAAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 1 0.02
25 23 0.55
26 18 0.43
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAC
Found at i:65991049 original size:31 final size:31
Alignment explanation
Indices: 65991011--65991094 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
65991001 TTGGTATAGT
65991011 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
65991042 AAAGGCTTTGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
65991073 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
65991095 CTAAGATTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:65999000 original size:43 final size:43
Alignment explanation
Indices: 65998897--65999000 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
65998887 TAGCCCGGCT
* * *
65998897 ATGGTCTTATACGA-AATCATATAACGATGCCAATGTCCCGGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* * *
65998940 ATAGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
65998983 ATGGTCTTACACATAATC
1 ATGGTCTTACACATAATC
65999001 TCATCTCAGA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:65999539 original size:75 final size:75
Alignment explanation
Indices: 65999457--65999607 Score: 266
Period size: 75 Copynumber: 2.0 Consensus size: 75
65999447 CATTTTCCAT
*
65999457 ATATTACTATCAGCCCATATTTCTAATTTATTTCACATTTTAACCACTAAACTTCCATATTTTAC
1 ATATTACTATCAGCCCATATTTCTAATTTATTTCACATTTTAACCACTAAACTTCCACATTTTAC
65999522 AATTTAGTCC
66 AATTTAGTCC
* * *
65999532 ATATTACTATCATCCCATATTTCTAATTTATTTCACATTTTAACCATTAAACTTCCACATTTTAT
1 ATATTACTATCAGCCCATATTTCTAATTTATTTCACATTTTAACCACTAAACTTCCACATTTTAC
65999597 AATTTAGTCC
66 AATTTAGTCC
65999607 A
1 A
65999608 AAATTGACAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.32, C:0.22, G:0.02, T:0.44
Consensus pattern (75 bp):
ATATTACTATCAGCCCATATTTCTAATTTATTTCACATTTTAACCACTAAACTTCCACATTTTAC
AATTTAGTCC
Found at i:66002653 original size:49 final size:50
Alignment explanation
Indices: 66002563--66002792 Score: 257
Period size: 49 Copynumber: 4.6 Consensus size: 50
66002553 ATCTATTGTG
* *
66002563 AGGTCACGTGTGTAGTACTAAGTGCAGGCTCCTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
66002613 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * ** * * **
66002663 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
** * *
66002713 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
66002763 -GGTCGCATGTGTAGTACTATGTGCAGGCTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTA
66002793 TTATGCGTAC
Statistics
Matches: 150, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 67 0.45
50 46 0.31
51 37 0.25
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:66002772 original size:101 final size:98
Alignment explanation
Indices: 66002570--66002792 Score: 254
Period size: 100 Copynumber: 2.2 Consensus size: 98
66002560 GTGAGGTCAC
* * *
66002570 GTGTGTAGTACTAAGTGCAGGCTCCTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
**
66002635 GCAGGCTACTATGCGTACCCGATAACTTCGATCA
66 GCAGGCTACTACACGTACCCGATAACTTCGA-CA
* ** **
66002669 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAA
1 -GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAA
* *
66002734 GTGCAGGCTACTACATGTA-CCGAATAATTGGTCG-CA
64 GTGCAGGCTACTACACGTACCCG-ATAACT--TCGACA
*
66002770 -TGTGTAGTACTATGTGCAGGCTA
1 GTGTGTAGTACTAAGTGCAGGCTA
66002793 TTATGCGTAC
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
99 22 0.21
100 41 0.39
101 40 0.38
103 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACACGTACCCGATAACTTCGACA
Found at i:66006625 original size:13 final size:13
Alignment explanation
Indices: 66006607--66006631 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66006597 CCGAAACTAG
66006607 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
66006620 AAAGAAAAAAAA
1 AAAGAAAAAAAA
66006632 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:66007805 original size:39 final size:40
Alignment explanation
Indices: 66007712--66007932 Score: 260
Period size: 39 Copynumber: 5.6 Consensus size: 40
66007702 GGATGATGTT
* *
66007712 CGGGCTAAGTCCCGAAGGC--TTGTGCTAGGTGAC-AATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTAAT-TC
* *
66007751 CGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTC
66007791 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTC
* *
66007830 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTC
* *
66007869 CGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-TC
*
66007909 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
66007933 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 90 0.56
40 59 0.37
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTC
Found at i:66007895 original size:79 final size:81
Alignment explanation
Indices: 66007712--66007932 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 81
66007702 GGATGATGTT
* * * *
66007712 CGGGCTAAGTCCCGAAGGC--TTGTGCTAGGTGAC-AATATCCGGACTAAGATCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTAATATCCGGGCTAAGACCCGAAGGCATTT
* *
66007774 GTGTGAGATACTAATTC
65 GTGCGAGATACTAAATC
66007791 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTG
*
66007853 TGCGAGTTACTAAATC
66 TGCGAGATACTAAATC
* * * *
66007869 CGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAATATCCGGGCTAAGACCCGAAGGCATTT
66007932 G
65 G
66007933 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
78 46 0.37
79 53 0.42
80 26 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGATACTAAATC
Found at i:66007954 original size:79 final size:79
Alignment explanation
Indices: 66007712--66007965 Score: 211
Period size: 79 Copynumber: 3.2 Consensus size: 79
66007702 GGATGATGTT
* * * * *
66007712 CGGGCTAAGTCCCGAAGGC--TTGTGCTAGGTGAC-AATATCCGGACTAAGATCCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTAATA-CCGGGCTAAG-CCCGAAGGCATTT
*** *
66007774 GTGTGAGAT-ACTAATTC
63 GAACGAG-TGACTAAATC
* * **
66007791 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTG
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAA
*
66007855 CGAGTTACTAAATC
66 CGAGTGACTAAATC
*
66007869 CGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
*
66007932 GAACGAG-GAGCTATATC
63 GAACGAGTGA-CTAAATC
* *
66007949 C-GGTTAAATTCCGAAGG
1 CGGGTTAAGTCCCGAAGG
66007966 TACGTGATTT
Statistics
Matches: 150, Mismatches: 16, Indels: 18
0.82 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.30
79 67 0.45
80 37 0.25
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAA
CGAGTGACTAAATC
Found at i:66014586 original size:13 final size:13
Alignment explanation
Indices: 66014568--66014592 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66014558 CCGAAACTAG
66014568 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
66014581 AAAGAAAAAAAA
1 AAAGAAAAAAAA
66014593 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:66015750 original size:39 final size:40
Alignment explanation
Indices: 66015706--66015876 Score: 251
Period size: 39 Copynumber: 4.3 Consensus size: 40
66015696 GGACTAAGAT
66015706 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
66015745 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
* * *
66015784 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
* *
66015824 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAGTC
66015864 CCGAAGGCATTTG
1 CCGAAGGCATTTG
66015877 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 75 0.62
40 46 0.38
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTC
Found at i:66015898 original size:79 final size:79
Alignment explanation
Indices: 66015706--66015909 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 79
66015696 GGACTAAGAT
** * *
66015706 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
66015769 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
66015784 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
66015848 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
66015864 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
66015910 TACGTGATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.34
79 47 0.43
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:66019178 original size:6 final size:6
Alignment explanation
Indices: 66019167--66019213 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
66019157 ACTTTTAGAC
*
66019167 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGAAT TTTATT TTTA-T TTTA
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG--T TTTAGT TTTAGT TTTA
66019214 TTTATTAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
5 5 0.13
6 28 0.74
8 5 0.13
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (6 bp):
TTTAGT
Found at i:66019190 original size:18 final size:19
Alignment explanation
Indices: 66019152--66019213 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 19
66019142 ATTATTATTG
*
66019152 TTTAGACTTTTAGACTTTAGT
1 TTTAGA-TTTTAG-TTTTAGT
66019173 TTTAG-TTTTAGTTTTAGT
1 TTTAGATTTTAGTTTTAGT
*
66019191 TTTAGAATTTTATTTTTA-T
1 TTTAG-ATTTTAGTTTTAGT
66019210 TTTA
1 TTTA
66019214 TTTATTAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 11 0.30
19 11 0.30
20 10 0.27
21 5 0.14
ACGTcount: A:0.23, C:0.03, G:0.11, T:0.63
Consensus pattern (19 bp):
TTTAGATTTTAGTTTTAGT
Found at i:66034585 original size:16 final size:15
Alignment explanation
Indices: 66034564--66034597 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
66034554 AAAAAGAAGG
66034564 AAAAAGAATAATAGAT
1 AAAAAGAATAATA-AT
66034580 AAAAAGAATAATAAT
1 AAAAAGAATAATAAT
66034595 AAA
1 AAA
66034598 TAATTAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (15 bp):
AAAAAGAATAATAAT
Found at i:66034683 original size:16 final size:16
Alignment explanation
Indices: 66034661--66034704 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
66034651 GGAGTTTGTT
*
66034661 ATTATTTATTTACCAA
1 ATTATTTATTTACAAA
*
66034677 TTTATTTATTTACAAA
1 ATTATTTATTTACAAA
*
66034693 ATTATTTTTTTA
1 ATTATTTATTTA
66034705 ATGACTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTATTTATTTACAAA
Found at i:66035615 original size:30 final size:30
Alignment explanation
Indices: 66035579--66035639 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
66035569 ATTTGGATAC
66035579 ATAGTCAACGACTACAAAGATGTACCTATT
1 ATAGTCAACGACTACAAAGATGTACCTATT
* *
66035609 ATAGTCAATGACTACCAAGATGTACCTATT
1 ATAGTCAACGACTACAAAGATGTACCTATT
66035639 A
1 A
66035640 CCATAAGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (30 bp):
ATAGTCAACGACTACAAAGATGTACCTATT
Found at i:66037793 original size:24 final size:26
Alignment explanation
Indices: 66037741--66037809 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 26
66037731 AGTTGATGAA
*
66037741 TAGTAAGCTCTATCGAGCTG-GAAGC
1 TAGTAAGCTCTAACGAGCTGAGAAGC
*
66037766 -AGTAAGCTCTAACTAGCTGAG-A-C
1 TAGTAAGCTCTAACGAGCTGAGAAGC
*
66037789 TAGTAAGCTCTTACGAGCTGA
1 TAGTAAGCTCTAACGAGCTGA
66037810 TATATTGGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
23 1 0.03
24 36 0.95
25 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGTAAGCTCTAACGAGCTGAGAAGC
Found at i:66041282 original size:24 final size:25
Alignment explanation
Indices: 66041249--66041297 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
66041239 ACATTATGTA
66041249 TCGACAAAGCTAAAATGCCGAAAAG
1 TCGACAAAGCTAAAATGCCGAAAAG
*
66041274 TCGA-AAAGCTGAAATGCCGAAAAG
1 TCGACAAAGCTAAAATGCCGAAAAG
66041298 CTGAAAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.12
Consensus pattern (25 bp):
TCGACAAAGCTAAAATGCCGAAAAG
Found at i:66041287 original size:16 final size:16
Alignment explanation
Indices: 66041268--66041303 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66041258 CTAAAATGCC
*
66041268 GAAAAGTCGAAAAGCT
1 GAAAAGCCGAAAAGCT
*
66041284 GAAATGCCGAAAAGCT
1 GAAAAGCCGAAAAGCT
66041300 GAAA
1 GAAA
66041304 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.25, T:0.11
Consensus pattern (16 bp):
GAAAAGCCGAAAAGCT
Found at i:66041566 original size:29 final size:28
Alignment explanation
Indices: 66041514--66041626 Score: 136
Period size: 29 Copynumber: 4.0 Consensus size: 28
66041504 GTGAGCATGA
* *
66041514 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
66041542 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
66041571 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
66041600 ATATGAATATGATTGGGCTTAGTGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
66041627 TAGATACAGG
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 24 0.32
29 50 0.68
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:66041596 original size:58 final size:57
Alignment explanation
Indices: 66041527--66041637 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
66041517 TGAATGTGAC
* *
66041527 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* * * *
66041585 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAGTGGGCTAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
66041638 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:66047914 original size:27 final size:27
Alignment explanation
Indices: 66047884--66048061 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
66047874 ATATTGAGCC
* *
66047884 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
66047911 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
66047938 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
66047966 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
66047993 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
*
66048020 CGCACACTTAGTGCAACA-AAGTCGAA-T
1 CGCACACTTAGTGCTACATAA-TC-AACT
66048047 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66048062 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66048023 original size:82 final size:81
Alignment explanation
Indices: 66047905--66048060 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
66047895 TGCTATATAA
* * * *
66047905 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTC-GAATCGCA
66047970 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66047987 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACAAAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACAAAGTCGAATCGCA
66048051 CACTTAGTGC
65 CACTTAGTGC
66048061 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 19 0.29
82 46 0.71
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66055635 original size:23 final size:23
Alignment explanation
Indices: 66055592--66055635 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66055582 CAACCTATCA
* *
66055592 ATTCAATTTCATATCATTCATGC
1 ATTCAATTCCATATCACTCATGC
66055615 ATTCACATTCCATAT-ACTCAT
1 ATTCA-ATTCCATATCACTCAT
66055636 CAATAGGACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTCAATTCCATATCACTCATGC
Found at i:66055935 original size:27 final size:27
Alignment explanation
Indices: 66055905--66056079 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
66055895 GTATATGAGC
* * *
66055905 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
66055932 CGCACACTTAGTGCTAC-TAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
66055958 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
66055985 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
66056012 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
66056039 CGCACACTTAGTGCAACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
66056065 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66056080 GTACAATTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
26 40 0.31
27 88 0.68
28 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:66055985 original size:53 final size:54
Alignment explanation
Indices: 66055905--66056079 Score: 212
Period size: 53 Copynumber: 3.3 Consensus size: 54
66055895 GTATATGAGC
* * * *
66055905 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTAC-TAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
66055958 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
66056012 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTC-AAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
66056065 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66056080 GTACAATTTA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 56 0.54
54 48 0.46
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:66073543 original size:28 final size:28
Alignment explanation
Indices: 66073497--66073550 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
66073487 TTCTCACAAC
66073497 CGTGTCACTGCCCGAGGTATGAGCACGT
1 CGTGTCACTGCCCGAGGTATGAGCACGT
* * *
66073525 CGTGTCGCTGTCCGTGGTATGAGCAC
1 CGTGTCACTGCCCGAGGTATGAGCAC
66073551 AGCCTAAGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (28 bp):
CGTGTCACTGCCCGAGGTATGAGCACGT
Found at i:66077674 original size:20 final size:21
Alignment explanation
Indices: 66077649--66077688 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
66077639 CCCACGTTGA
66077649 CCCATTTTCTC-CT-TTTTTAG
1 CCCA-TTTCTCGCTCTTTTTAG
66077669 CCCATTTCTCGCTCTTTTTA
1 CCCATTTCTCGCTCTTTTTA
66077689 CTCTCCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.10, C:0.33, G:0.05, T:0.53
Consensus pattern (21 bp):
CCCATTTCTCGCTCTTTTTAG
Found at i:66079790 original size:75 final size:76
Alignment explanation
Indices: 66079660--66079826 Score: 259
Period size: 75 Copynumber: 2.2 Consensus size: 76
66079650 TAAACCCACA
* *
66079660 TTAAATGTTACTTAAACCATTAAAGGGTTTTAAAGAAATTAAGTAACTCATAATAATGA-AAAAT
1 TTAAATGTTACTTAAACCATTAAAGGCTTTTAAAGAAATTAAGTAACTCAAAATAATGACAAAA-
66079724 TTACTTAATTTC
65 TTACTTAATTTC
* *
66079736 TTAAATGTTACATAAA-CATTAAAGGACTTTTAAA-AAATTAAGTAACTTAAAATAATGACAAAA
1 TTAAATGTTACTTAAACCATTAAAGG-CTTTTAAAGAAATTAAGTAACTCAAAATAATGACAAAA
66079799 TTACTTAATTTC
65 TTACTTAATTTC
66079811 TTAAATGTTACTTAAA
1 TTAAATGTTACTTAAA
66079827 ATATTAAAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
75 58 0.69
76 26 0.31
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.37
Consensus pattern (76 bp):
TTAAATGTTACTTAAACCATTAAAGGCTTTTAAAGAAATTAAGTAACTCAAAATAATGACAAAAT
TACTTAATTTC
Found at i:66079867 original size:23 final size:24
Alignment explanation
Indices: 66079841--66079888 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
66079831 TAAAAATTCC
66079841 TAAATCTT-GCTAAATTACTTAAT
1 TAAATCTTGGCTAAATTACTTAAT
* *
66079864 TAAATCTTGGGTAATTTACTTAAT
1 TAAATCTTGGCTAAATTACTTAAT
66079888 T
1 T
66079889 TCTTACATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.46
Consensus pattern (24 bp):
TAAATCTTGGCTAAATTACTTAAT
Found at i:66081944 original size:28 final size:25
Alignment explanation
Indices: 66081886--66081944 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 25
66081876 GGATTTTTAG
*
66081886 TTTATTTAATATTAATATATTTATA
1 TTTATTTAATATTAATATATTTAAA
66081911 TTTATTTAATATTAATATTAAATTTAAA
1 TTTATTTAATATTAATA-T--ATTTAAA
66081939 TTTATT
1 TTTATT
66081945 ATTATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 17 0.57
26 1 0.03
28 12 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTATTTAATATTAATATATTTAAA
Found at i:66081981 original size:19 final size:20
Alignment explanation
Indices: 66081949--66081986 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
66081939 TTTATTATTA
66081949 TATTTTTAGAATATTTTTTT
1 TATTTTTAGAATATTTTTTT
*
66081969 TATTTTTA-TATATTTTTT
1 TATTTTTAGAATATTTTTT
66081987 AAAATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (20 bp):
TATTTTTAGAATATTTTTTT
Found at i:66081999 original size:52 final size:53
Alignment explanation
Indices: 66081936--66082036 Score: 159
Period size: 52 Copynumber: 1.9 Consensus size: 53
66081926 TATTAAATTT
* * * *
66081936 AAATTTATTATTATATTTTTAGAATAT-TTTTTTTATTTTTATATATTTTTTA
1 AAATTTATTATTATATTTTTAAAAAATATTTATGTATTTTTATATATTTTTTA
66081988 AAATTTATTATTATATTTTTAAAAAATATTTATGTATTTTTATATATTT
1 AAATTTATTATTATATTTTTAAAAAATATTTATGTATTTTTATATATTT
66082037 CTTTGAATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 25 0.57
53 19 0.43
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (53 bp):
AAATTTATTATTATATTTTTAAAAAATATTTATGTATTTTTATATATTTTTTA
Found at i:66082005 original size:22 final size:20
Alignment explanation
Indices: 66081970--66082029 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 20
66081960 TATTTTTTTT
*
66081970 ATTTTTATATATTTTTTAAA
1 ATTTTTATATATTTTTAAAA
66081990 ATTTATTATTATATTTTTAAAAA
1 ATTT-TTA-TATATTTTT-AAAA
* *
66082013 ATATTTATGTATTTTTA
1 ATTTTTATATATTTTTA
66082030 TATATTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.15
21 11 0.32
22 12 0.35
23 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTTATATATTTTTAAAA
Done.