Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 201 of 320
Found at i:67258189 original size:40 final size:40
Alignment explanation
Indices: 67258090--67258280 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
67258080 TGGATGATAA
* * * * **
67258090 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
67258130 CCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
67258169 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
67258209 CCGGGCTAAGTCCCGAAGGCAATTGGGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
67258249 CCGGGCTATGTCTCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67258281 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 33 0.24
40 101 0.74
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:67258253 original size:80 final size:78
Alignment explanation
Indices: 67258087--67258306 Score: 253
Period size: 80 Copynumber: 2.8 Consensus size: 78
67258077 ATTTGGATGA
* * * ** *
67258087 TAACCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCGGGTAAGTCCCGAAGGCATT
1 TAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAAATCCGGGTAAGTCCCGAAGGCAAT
*
67258152 TGTGCGAGTTACT
66 TGGGCGAGTTACT
* * *
67258165 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCA
1 TAA-CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAAATCCGGG-TAAGTCCCGAAGGCA
67258230 ATTGGGCGAGTTACT
64 ATTGGGCGAGTTACT
* * * * * *
67258245 CTAACCGGGCTATGTCTCGAAGGCATTTGAGCGAGT-AGCTATATCCGGTTAAATTCCGAAGG
1 -TAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGA-CTAAATCCGGGTAAGTCCCGAAGG
67258307 TACGTGATTT
Statistics
Matches: 121, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 51 0.42
80 66 0.55
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (78 bp):
TAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAAATCCGGGTAAGTCCCGAAGGCAAT
TGGGCGAGTTACT
Found at i:67265059 original size:40 final size:40
Alignment explanation
Indices: 67264960--67265190 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
67264950 TGGATGATAA
* * * * **
67264960 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
67265000 CCGGGC-AAGTCTCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
67265039 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
67265079 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
67265119 CCGGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
67265159 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67265191 AGCTATATCC
Statistics
Matches: 172, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 32 0.19
40 138 0.80
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:67274164 original size:11 final size:11
Alignment explanation
Indices: 67274117--67274165 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
67274107 GACTTTGATA
67274117 TACATGAT-TG
1 TACATGATATG
*
67274127 GACATGATATG
1 TACATGATATG
**
67274138 CGCATGATATG
1 TACATGATATG
67274149 T--ATGATATG
1 TACATGATATG
67274158 TACATGAT
1 TACATGAT
67274166 GTATTCATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
9 9 0.28
10 7 0.22
11 16 0.50
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (11 bp):
TACATGATATG
Found at i:67274321 original size:24 final size:25
Alignment explanation
Indices: 67274213--67274308 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
67274203 GAGGAAGTGC
* * *
67274213 AAAAGGGTTTTTGCCCCAGTTTACCG
1 AAAAGGG-CTTTGCCCCAGTTTATCA
67274239 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
67274264 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
67274289 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67274309 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
25 60 0.90
26 7 0.10
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:67274332 original size:50 final size:50
Alignment explanation
Indices: 67274225--67274333 Score: 141
Period size: 50 Copynumber: 2.2 Consensus size: 50
67274215 AAGGGTTTTT
* **
67274225 GCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTT
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTAG
* *
67274275 GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTAT-TAAAAGAGGCTAG
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCAAAAAG-GGCTAG
67274324 GCCTCCAGTT
1 GCC-CCAGTT
67274334 ATATGATAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 5 0.10
49 11 0.21
50 36 0.69
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTAG
Found at i:67274503 original size:42 final size:42
Alignment explanation
Indices: 67274456--67274547 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
67274446 TAGTCTCCCC
* ** *
67274456 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67274498 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67274540 AAATGGGC
1 AAATGGGC
67274548 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:67274605 original size:30 final size:31
Alignment explanation
Indices: 67274571--67274653 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
67274561 CGTTTACAGT
67274571 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
67274601 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
67274632 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
67274654 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 26 0.54
31 22 0.46
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:67279867 original size:27 final size:27
Alignment explanation
Indices: 67279837--67279924 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
67279827 ATTACCAAAG
* * * *
67279837 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
*
67279864 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCATTT
*
67279891 TACCCTCAGTTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCATTT
67279918 TACCCTC
1 TACCCTC
67279925 GATTGTGAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.39
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCATTT
Found at i:67279882 original size:54 final size:54
Alignment explanation
Indices: 67279810--67279928 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
67279800 ATTACTGAAA
* ** * * * *
67279810 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCATTT
*** *
67279864 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCATTT
67279918 TACCCTCGATT
1 TACCCTCGATT
67279929 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAGTACCCTCAATTTACAAAATTACCATTT
Found at i:67280029 original size:27 final size:27
Alignment explanation
Indices: 67279798--67280057 Score: 73
Period size: 27 Copynumber: 9.7 Consensus size: 27
67279788 TTAGTTTACC
** * *
67279798 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
* *
67279825 AAATTACCAAAGTACCCTCAATTTATA
1 AAATTACCAAAATACCCTCAATTTGTA
* * **** * **
67279852 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCAATTTGTA
*** * **
67279879 AAATTACCATTTTACCCTCAGTTTACA
1 AAATTACCAAAATACCCTCAATTTGTA
*** * *
67279906 AAATTACCATTTTACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCAATTTGTA
** ** **
67279932 AAATTACTGAAATACCC-CTGTAGGATA
1 AAATTACCAAAATACCCTCAATTTG-TA
* **
67279959 GAATTACCAAAATACCACT-GGTTTG-A
1 AAATTACCAAAATACC-CTCAATTTGTA
* * *
67279985 GAAATTACCGAGACACCCTCAATTTGTA
1 -AAATTACCAAAATACCCTCAATTTGTA
**
67280013 AAATTACCAAAATACCC-CTAATTTACA
1 AAATTACCAAAATACCCTC-AATTTGTA
67280040 AAATTA-CAGAAATACCCT
1 AAATTACCA-AAATACCCT
67280058 TGACTTTTTT
Statistics
Matches: 172, Mismatches: 51, Indels: 19
0.71 0.21 0.08
Matches are distributed among these distances:
25 1 0.01
26 21 0.12
27 145 0.84
28 5 0.03
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTGTA
Found at i:67280094 original size:26 final size:27
Alignment explanation
Indices: 67280065--67280120 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
67280055 CCTTGACTTT
*
67280065 TTTA-AAAACTATAGGAATACCATTGG
1 TTTACAAAACTATAGAAATACCATTGG
* * *
67280091 TTTACAAAATTATTGAAATACCCTTGG
1 TTTACAAAACTATAGAAATACCATTGG
67280118 TTT
1 TTT
67280121 GTAGATTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (27 bp):
TTTACAAAACTATAGAAATACCATTGG
Found at i:67281076 original size:25 final size:24
Alignment explanation
Indices: 67281036--67281105 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
67281026 AAGAAGTGCT
* *
67281036 AAAAGGGCTCTACCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
67281060 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
67281085 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
67281106 ATTAAAAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:67281312 original size:42 final size:42
Alignment explanation
Indices: 67281253--67281344 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
67281243 TAGTCTCCCC
* ** *
67281253 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67281295 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67281337 AAATGGGC
1 AAATGGGC
67281345 CTAAGGGTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:67281406 original size:31 final size:31
Alignment explanation
Indices: 67281368--67281446 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
67281358 CGTTTACAGT
67281368 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
67281399 AAAGGCTTCGGCCCAGTGATATGATTTATGT
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
67281430 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
67281447 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:67282356 original size:27 final size:26
Alignment explanation
Indices: 67282326--67282395 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
67282316 TGTTAATCAG
*
67282326 GGGTATTTTGGTAATTT-TACAAATTAA
1 GGGTATTTTGGTAATTTCT-CAAA-CAA
* *
67282353 GGGTATTTCGGTAATTTCTCAAACCA
1 GGGTATTTTGGTAATTTCTCAAACAA
67282379 GTGGTATTTTGGTAATT
1 G-GGTATTTTGGTAATT
67282396 CTATCCTACA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 34 0.92
28 1 0.03
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTCTCAAACAA
Found at i:67282446 original size:26 final size:26
Alignment explanation
Indices: 67282417--67282476 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
67282407 GGGTATTTCA
*
67282417 GTAATTT-CACAATTGAGGGTAAAACG
1 GTAATTTGCA-AACTGAGGGTAAAACG
* *
67282443 GTAATTTTGTAAACTGAGGGTAAAATG
1 GTAA-TTTGCAAACTGAGGGTAAAACG
67282470 GTAATTT
1 GTAATTT
67282477 TGTAAATCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 7 0.24
27 21 0.72
28 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (26 bp):
GTAATTTGCAAACTGAGGGTAAAACG
Found at i:67282504 original size:27 final size:27
Alignment explanation
Indices: 67282430--67282491 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
67282420 ATTTCACAAT
*
67282430 TGAGGGTAAAACGGTAATTTTGTAAAC
1 TGAGGGTAAAATGGTAATTTTGTAAAC
67282457 TGAGGGTAAAATGGTAATTTTGTAAA-
1 TGAGGGTAAAATGGTAATTTTGTAAAC
67282483 TCGAGGGTA
1 T-GAGGGTA
67282492 CTTTGGTAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
26 1 0.03
27 32 0.97
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (27 bp):
TGAGGGTAAAATGGTAATTTTGTAAAC
Found at i:67284899 original size:16 final size:17
Alignment explanation
Indices: 67284878--67284917 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
67284868 TTTTGAGCAT
*
67284878 TTTTTAATATTGTAT-A
1 TTTTTAATATTCTATCA
67284894 TTTTT-AT-TTCTATCA
1 TTTTTAATATTCTATCA
67284909 TTTTTAATA
1 TTTTTAATA
67284918 ATGTTTTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTTAATATTCTATCA
Found at i:67286378 original size:21 final size:19
Alignment explanation
Indices: 67286344--67286405 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
67286334 TAAGTTATGT
67286344 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
67286366 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
67286388 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
67286406 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:67286537 original size:18 final size:18
Alignment explanation
Indices: 67286514--67286554 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
67286504 GAATATTGAA
67286514 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
67286532 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
67286550 AAATA
1 TAATA
67286555 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:67286903 original size:20 final size:21
Alignment explanation
Indices: 67286869--67286908 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
67286859 ATTTGCCATT
*
67286869 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
67286890 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
67286909 TATAAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:67286921 original size:12 final size:11
Alignment explanation
Indices: 67286898--67286927 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
67286888 AATACAATTT
67286898 TATAAAAAATA
1 TATAAAAAATA
67286909 TATAAAGAAATA
1 TATAAA-AAATA
67286921 TATAAAA
1 TATAAAA
67286928 TAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
TATAAAAAATA
Found at i:67286933 original size:14 final size:14
Alignment explanation
Indices: 67286903--67286977 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
67286893 AATTTTATAA
67286903 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
67286915 GAAATATATAAAAT
1 AAAATATATAAAAT
*
67286929 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
67286943 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
67286959 AAAATATATGATAAT
1 AAAATATAT-AAAAT
67286974 AAAA
1 AAAA
67286978 AATAATGGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:67288948 original size:206 final size:206
Alignment explanation
Indices: 67288594--67289148 Score: 853
Period size: 206 Copynumber: 2.7 Consensus size: 206
67288584 AATCTGCTTT
*
67288594 TTCGATTTGTTCTCTGATAATACAGAA-ATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 TTCGATTTGTTCTCTGACAATACA-AAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * * * * *
67288658 ACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCGTTGTAAATACAAGGATACCAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
67288723 GGATCTGCTTCAGTCTAATCATCTAAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
130 GGATCTGCTTCAGTCTAATCATCTAAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
67288788 GAGACGCCAAAC
195 GAGACGCCAAAC
* *
67288800 TTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCATG
1 TTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
* *
67288865 TGAAAGCTAAATCAGCTATGAT-TTCAATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 TGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* *
67288929 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
130 GGATCTGCTTCAGTCTAATCATCTAAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
67288994 GAGACGCCAAAC
195 GAGACGCCAAAC
* * * *
67289006 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
* * ** *
67289071 TGAAAGCCAAATCAGTTATGTCTTCGTTTTGTTCCAGGTAAGCACAAGGATGCCAAATCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
67289136 GATCCTGCTTCAG
131 GAT-CTGCTTCAG
67289149 CCAGATCTGC
Statistics
Matches: 317, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
205 3 0.01
206 304 0.96
207 10 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
TTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
GATCTGCTTCAGTCTAATCATCTAAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
AGACGCCAAAC
Found at i:67297026 original size:48 final size:48
Alignment explanation
Indices: 67296968--67297305 Score: 554
Period size: 48 Copynumber: 7.0 Consensus size: 48
67296958 ATAAATATAT
*
67296968 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67297016 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67297064 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
67297112 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67297160 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* * *
67297210 ATATGTATATTTGGCAAAGCCGAA--GCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67297256 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
67297304 AT
1 AT
67297306 GTGTGTATAT
Statistics
Matches: 275, Mismatches: 11, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
46 32 0.12
47 2 0.01
48 207 0.75
49 2 0.01
50 32 0.12
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:67297496 original size:37 final size:37
Alignment explanation
Indices: 67297446--67297548 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
67297436 GGAAATATAT
67297446 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
67297483 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
67297520 CCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67297549 GGACTATTTG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:67304776 original size:5 final size:5
Alignment explanation
Indices: 67304766--67304823 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
67304756 GTTATGTATA
* * * * *
67304766 ATAAT ATAAT ATGAAT AAAAT ATAAG AAAAT ATAAT ATAAA ATAAT AAAAAT
1 ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
67304818 ATAAT A
1 ATAAT A
67304824 AGTATTTTGC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 33 0.80
6 8 0.20
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (5 bp):
ATAAT
Found at i:67304797 original size:21 final size:20
Alignment explanation
Indices: 67304763--67304824 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 20
67304753 TAAGTTATGT
67304763 ATAATAATATAATATGAATAAAA
1 ATAATAA-A-AATAT-AATAAAA
*
67304786 TATAA-GAAAATATAATATAAA
1 -ATAATAAAAATATAATA-AAA
67304807 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
67304825 GTATTTTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
20 9 0.26
21 19 0.56
22 1 0.03
23 1 0.03
24 4 0.12
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (20 bp):
ATAATAAAAATATAATAAAA
Found at i:67304955 original size:18 final size:18
Alignment explanation
Indices: 67304932--67304972 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
67304922 GAATATTGAA
67304932 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
67304950 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
67304968 AAATA
1 TAATA
67304973 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:67305339 original size:12 final size:11
Alignment explanation
Indices: 67305316--67305345 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
67305306 AATACAATTT
67305316 TATAAAAAATA
1 TATAAAAAATA
67305327 TATAAAGAAATA
1 TATAAA-AAATA
67305339 TATAAAA
1 TATAAAA
67305346 TAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
TATAAAAAATA
Found at i:67305351 original size:14 final size:14
Alignment explanation
Indices: 67305321--67305395 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
67305311 AATTTTATAA
67305321 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
67305333 GAAATATATAAAAT
1 AAAATATATAAAAT
*
67305347 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
67305361 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
67305377 AAAATATATGATAAT
1 AAAATATAT-AAAAT
67305392 AAAA
1 AAAA
67305396 ATAATGGATA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:67305383 original size:28 final size:29
Alignment explanation
Indices: 67305352--67305419 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 29
67305342 AAAATAAAAT
* * *
67305352 ATATAATATAATATAATTTATAGATAA-A
1 ATATAATATAATAAAAATAATAGATAATA
*
67305380 ATAT-ATGATAATAAAAATAATGGATAATA
1 ATATAAT-ATAATAAAAATAATAGATAATA
67305409 ATAGTAATATA
1 ATA-TAATATA
67305420 TAACTAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
27 2 0.06
28 20 0.62
29 4 0.12
30 4 0.12
31 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (29 bp):
ATATAATATAATAAAAATAATAGATAATA
Found at i:67305422 original size:16 final size:15
Alignment explanation
Indices: 67305335--67305429 Score: 59
Period size: 16 Copynumber: 6.0 Consensus size: 15
67305325 TATATAAAGA
*
67305335 AATATATAA-AATAA
1 AATATATAATAATAT
67305349 AATATATAATATAATAT
1 AATATAT-A-ATAATAT
* *
67305366 AATTTATAGATAAAAT
1 AATATATA-ATAATAT
*
67305382 -ATATGATAATAAAAAT
1 AATAT-ATAAT-AATAT
**
67305398 AATGGATAATAATAGT
1 AATATATAATAATA-T
67305414 AATATATAACTAATAT
1 AATATATAA-TAATAT
67305430 TTAAAAAATA
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
14 7 0.11
15 9 0.14
16 30 0.48
17 17 0.27
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (15 bp):
AATATATAATAATAT
Found at i:67305429 original size:11 final size:11
Alignment explanation
Indices: 67305316--67305445 Score: 54
Period size: 11 Copynumber: 11.5 Consensus size: 11
67305306 AATACAATTT
*
67305316 TATAAAAAATA
1 TATAAATAATA
*
67305327 TATAAAGAAATA
1 TATAAA-TAATA
67305339 TATAAAATAA-A
1 TAT-AAATAATA
*
67305350 -ATATATAATA
1 TATAAATAATA
* *
67305360 TA-ATATAATT
1 TATAAATAATA
* *
67305370 TATAGATAAAA
1 TATAAATAATA
*
67305381 TATATGATAATA
1 TATA-AATAATA
67305393 -A-AAATAATGGA
1 TATAAATAAT--A
67305404 TAATAATAGTAATA
1 T-ATAA-A-TAATA
*
67305418 TATAACTAATA
1 TATAAATAATA
* *
67305429 TTTAAAAAATA
1 TATAAATAATA
67305440 TATAAA
1 TATAAA
67305446 GTATTTAAAG
Statistics
Matches: 93, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
9 10 0.11
10 13 0.14
11 37 0.40
12 16 0.17
13 8 0.09
14 4 0.04
15 1 0.01
16 4 0.04
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (11 bp):
TATAAATAATA
Found at i:67308931 original size:19 final size:20
Alignment explanation
Indices: 67308897--67308938 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
67308887 TTATTATTGA
*
67308897 CTTTTTTTCTTTTTTTTTTC
1 CTTTGTTTCTTTTTTTTTTC
67308917 CTTTGTTTC-TTTTTTTTTC
1 CTTTGTTTCTTTTTTTTTTC
67308936 CTT
1 CTT
67308939 CTTATGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (20 bp):
CTTTGTTTCTTTTTTTTTTC
Found at i:67309642 original size:16 final size:16
Alignment explanation
Indices: 67309596--67309644 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
67309586 TGAGGATAGG
* *
67309596 GAAAATAAAGAAGAGA
1 GAAAAGAAAGAAAAGA
*
67309612 GAAAAGAAAGGAAAGA
1 GAAAAGAAAGAAAAGA
67309628 GAAGAA-AAAGAAAAGA
1 GAA-AAGAAAGAAAAGA
67309644 G
1 G
67309645 GGAAACGCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 26 0.93
17 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (16 bp):
GAAAAGAAAGAAAAGA
Found at i:67309945 original size:3 final size:3
Alignment explanation
Indices: 67309937--67309991 Score: 62
Period size: 3 Copynumber: 19.3 Consensus size: 3
67309927 GCAAAACAGT
* * *
67309937 AGA AGA AG- AGA AGA AGA AGA ATA AGA AG- AGG AGA AGA AGA AAA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
67309983 AG- AGA AGA A
1 AGA AGA AGA A
67309992 ATGGAGATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
2 6 0.14
3 38 0.86
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:67309962 original size:17 final size:16
Alignment explanation
Indices: 67309937--67309992 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 16
67309927 GCAAAACAGT
*
67309937 AGAAGAAGAGAAGAAGA
1 AGAAGAAAAG-AGAAGA
* *
67309954 AGAATAAGAAGAGGAGA
1 AGAAGAA-AAGAGAAGA
67309971 AGAAGAAAA-AGAAG-
1 AGAAGAAAAGAGAAGA
67309985 AGAAGAAA
1 AGAAGAAA
67309993 TGGAGATGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 8 0.24
15 4 0.12
16 2 0.06
17 17 0.52
18 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (16 bp):
AGAAGAAAAGAGAAGA
Found at i:67309964 original size:20 final size:20
Alignment explanation
Indices: 67309939--67309991 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
67309929 AAAACAGTAG
*
67309939 AAGAAGAGAAGAAGAAGAAT
1 AAGAAGAGAAGAAGAAGAAA
*
67309959 AAGAAGAGGAGAAGAAGAAA
1 AAGAAGAGAAGAAGAAGAAA
67309979 AAGAAGAGAAGAA
1 AAGAAGAGAAGAA
67309992 ATGGAGATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (20 bp):
AAGAAGAGAAGAAGAAGAAA
Found at i:67309985 original size:23 final size:23
Alignment explanation
Indices: 67309937--67309990 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
67309927 GCAAAACAGT
* *
67309937 AGAAGAAGAGAAGAAGAAGAATA
1 AGAAGAAGAGAAGAAGAAAAAGA
*
67309960 AGAAGAGGAGAAGAAGAAAAAGA
1 AGAAGAAGAGAAGAAGAAAAAGA
67309983 AG-AGAAGA
1 AGAAGAAGA
67309991 AATGGAGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (23 bp):
AGAAGAAGAGAAGAAGAAAAAGA
Found at i:67315066 original size:29 final size:29
Alignment explanation
Indices: 67314948--67315048 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
67314938 GATCAAAATA
*
67314948 TAATAAATTAAAGTTCAATGACCAAAAGG
1 TAATAAATTAAAGTTCAATGACCAAAACG
* * *
67314977 TAATAAATTAAAGTCCATTGATCAAAACG
1 TAATAAATTAAAGTTCAATGACCAAAACG
67315006 -AATAAATTAAAGTTCAATGACCAAAACG
1 TAATAAATTAAAGTTCAATGACCAAAACG
67315034 TAATAAATTAAAGTT
1 TAATAAATTAAAGTT
67315049 TAGTGACCTA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
28 25 0.39
29 39 0.61
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (29 bp):
TAATAAATTAAAGTTCAATGACCAAAACG
Found at i:67320482 original size:46 final size:46
Alignment explanation
Indices: 67320430--67320753 Score: 425
Period size: 46 Copynumber: 7.0 Consensus size: 46
67320420 GTGTGCTCTT
*
67320430 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
67320476 TGATATGAAATGTGTAAGACCATTGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
*
67320522 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
67320568 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
*** * * *
67320614 TGACGGGAAATGAATAAAACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
67320660 TAACATGAAATGAATAAGACCATGGTTGGAAGATACCATGGCAACA
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
** ** * * * *
67320706 TGGCA-GAAAATGGGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
67320752 TG
1 TG
67320754 TCAAAGATAA
Statistics
Matches: 251, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 250 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:67321054 original size:16 final size:17
Alignment explanation
Indices: 67321033--67321065 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67321023 ATGATGGAGC
67321033 ATGAAA-CATTGATATA
1 ATGAAATCATTGATATA
*
67321049 ATGAAATGATTGATATA
1 ATGAAATCATTGATATA
67321066 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.15, T:0.33
Consensus pattern (17 bp):
ATGAAATCATTGATATA
Found at i:67328841 original size:46 final size:45
Alignment explanation
Indices: 67328774--67328945 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 45
67328764 TGTAACCCGC
*
67328774 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTT-GCAT
* *
67328820 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTGCAT
* * * *
67328870 --TTCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-C-GTTGCAT
67328913 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
67328946 TGGATGCTCA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 2 0.02
46 58 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTGCAT
Found at i:67328941 original size:93 final size:93
Alignment explanation
Indices: 67328782--67328952 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67328772 GCCCATAAGT
*
67328782 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67328847 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
67328875 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67328939 ACGAGTTTGGATGC
65 ACGAGTTCGGATGC
67328953 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:67335232 original size:42 final size:42
Alignment explanation
Indices: 67335169--67335295 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
67335159 CTTCGTTTTC
** * *
67335169 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
67335212 T-GATGCCATAGCCTAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
67335253 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
67335294 TC
1 TC
67335296 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.14
42 62 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:67335357 original size:47 final size:46
Alignment explanation
Indices: 67335255--67335377 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 46
67335245 TTCATATATC
* * * * * *
67335255 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACA
* *
67335301 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACA
1 GATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACACA
67335348 GATGCCATATCCCAGATATGGTCTTATACG
1 GATGCCATATCCCAGATATGGTCTTATACG
67335378 GAAATCACTT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACA
Found at i:67335441 original size:31 final size:31
Alignment explanation
Indices: 67335395--67335543 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
67335385 CTTGTCACTT
* *
67335395 GTAGCCGAAGCTACCACTATTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
67335426 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
67335457 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
67335488 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
67335519 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
67335544 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:67335620 original size:50 final size:51
Alignment explanation
Indices: 67335519--67335647 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
67335509 CACTGATCAG
* * *
67335519 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTAATCAGATAAGT
* *
67335570 GTAGCCGAAACTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTAATCAGATAAGT
67335620 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
67335648 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTAATCAGATAAGT
Found at i:67338407 original size:46 final size:47
Alignment explanation
Indices: 67338328--67338499 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 47
67338318 GGGGTAGGGT
* *
67338328 GCCGATGCCATATCCCAGACATGGTGTTACACTGACTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCG-A
* * *
67338376 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACGTCTCGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CATCTCG-A
** * *
67338422 ATCGATG-CATGTCCCGGACAT-GTCTTACACT-AGC-ACTCTTCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCGA
* *
67338467 TGCCAATGTCATGTCCCAGACATGGTCTTACAC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACAC
67338500 AGGCTCTCAT
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.02
46 57 0.56
47 26 0.26
48 16 0.16
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGA
Found at i:67339079 original size:34 final size:34
Alignment explanation
Indices: 67339041--67339110 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
67339031 TTATGCAAAA
* * *
67339041 TAGTCCTTTTATATGTTTTTATGCTAACACCTTT
1 TAGTCATTTTAGATGTTTTCATGCTAACACCTTT
*
67339075 TAGTCATTTTAGGTGTTTTCATGCTAACACCTTT
1 TAGTCATTTTAGATGTTTTCATGCTAACACCTTT
67339109 TA
1 TA
67339111 CAAAAGTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.50
Consensus pattern (34 bp):
TAGTCATTTTAGATGTTTTCATGCTAACACCTTT
Found at i:67347524 original size:25 final size:25
Alignment explanation
Indices: 67347490--67347538 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
67347480 ACTCGTACAA
67347490 GAGTAGTTGTAATTAGGTTAAGGAC
1 GAGTAGTTGTAATTAGGTTAAGGAC
67347515 GAGTAGTTGTAATTAGGTTAAGGA
1 GAGTAGTTGTAATTAGGTTAAGGA
67347539 AAGGAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.33
Consensus pattern (25 bp):
GAGTAGTTGTAATTAGGTTAAGGAC
Found at i:67354211 original size:25 final size:25
Alignment explanation
Indices: 67354177--67354224 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
67354167 CTCAACTTGA
67354177 CTTTGCAACCAAATCTAAGAATTGG
1 CTTTGCAACCAAATCTAAGAATTGG
67354202 CTTTGCAACCAAATCTAAGAATT
1 CTTTGCAACCAAATCTAAGAATT
67354225 TTCTTCCACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (25 bp):
CTTTGCAACCAAATCTAAGAATTGG
Found at i:67359965 original size:26 final size:26
Alignment explanation
Indices: 67359934--67360041 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
67359924 TGAAATGCCC
*
67359934 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
67359960 ATCATGGAACATTTACCTAACCCACT
1 ATCATGGAACATTTACCTAACCCATT
* *
67359986 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
67360012 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67360038 ATCA
1 ATCA
67360042 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67364972 original size:20 final size:20
Alignment explanation
Indices: 67364947--67365000 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
67364937 AATAAGGGTC
*
67364947 ACACGCCTGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
67364967 ACACGCCCATGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
67364987 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
67365001 GCAGGCCGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:67366989 original size:26 final size:26
Alignment explanation
Indices: 67366953--67367004 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
67366943 TCATAAAAGC
*
67366953 CCACGTTTTTCATTTATTCACACTTT
1 CCACATTTTTCATTTATTCACACTTT
67366979 CCACATTTTTCATTTATTCACACTTT
1 CCACATTTTTCATTTATTCACACTTT
67367005 TTTACAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.27, G:0.02, T:0.50
Consensus pattern (26 bp):
CCACATTTTTCATTTATTCACACTTT
Found at i:67367108 original size:21 final size:22
Alignment explanation
Indices: 67367078--67367119 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
67367068 TTGTAAATAT
67367078 TGTTTATCTAACATTAAACATA
1 TGTTTATCTAACATTAAACATA
*
67367100 TGTTT-TCTACCATTAAACAT
1 TGTTTATCTAACATTAAACAT
67367120 CAAAATACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.43
Consensus pattern (22 bp):
TGTTTATCTAACATTAAACATA
Found at i:67371301 original size:53 final size:54
Alignment explanation
Indices: 67371233--67371548 Score: 320
Period size: 53 Copynumber: 5.9 Consensus size: 54
67371223 TTTCCTTTTT
* * * *
67371233 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
67371286 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCATTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* *
67371340 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
67371394 GAACTCACCATTGCCATGCCTTGGA-ATGGTCTTACATAGG-A-CCTTTGCCTTGTA
1 GAACTCACCAATGCCATGCCTT-GACATGGTCTTACAT-GGTATCC-TTGCCTTATA
* ** * * * *
67371448 GTAACTCATCAATATCATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * *
67371503 GAACTTATCAATGCCATGCCTTGGCATGATCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
67371549 ATCTTACCAA
Statistics
Matches: 216, Mismatches: 35, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.02
53 81 0.38
54 47 0.22
55 80 0.37
56 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:67371356 original size:55 final size:53
Alignment explanation
Indices: 67371244--67371540 Score: 305
Period size: 55 Copynumber: 5.5 Consensus size: 53
67371234 AACTTACCAT
* * *
67371244 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * *
67371297 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCATTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * *
67371352 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAT
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
*
67371405 TGCCATGCCTTGGA-ATGGTCTTACATAGG-ACCTTTGCCTTGTAGTAACTCATCAA
1 TGCCATGCCTT-GACATGGTCTTACAT-GGTACC-TTGCCTTATAG-AACTCATCAA
** * * * * *
67371460 TATCATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* *
67371514 TGCCATGCCTTGGCATGATCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
67371541 ATATCCTTAT
Statistics
Matches: 200, Mismatches: 32, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
52 4 0.02
53 72 0.36
54 40 0.20
55 80 0.40
56 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:67371436 original size:108 final size:108
Alignment explanation
Indices: 67371244--67371539 Score: 448
Period size: 108 Copynumber: 2.7 Consensus size: 108
67371234 AACTTACCAT
*
67371244 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* *
67371309 GCATGGTCTTACATGGGACCTTTTCATTATAGTAACTCATCAA
66 GCATGGTCTTACATAGGACCTTTGCATTATAGTAACTCATCAA
*
67371352 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCATTGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* * *
67371417 GAATGGTCTTACATAGGACCTTTGCCTTGTAGTAACTCATCAA
66 GCATGGTCTTACATAGGACCTTTGCATTATAGTAACTCATCAA
** * * * * *
67371460 TATCATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
*
67371525 GGCATGATCTTACAT
65 GGCATGGTCTTACAT
67371540 GATATCCTTA
Statistics
Matches: 170, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
108 138 0.81
109 32 0.19
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATAGGACCTTTGCATTATAGTAACTCATCAA
Found at i:67371584 original size:47 final size:47
Alignment explanation
Indices: 67371527--67371648 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
67371517 CATGCCTTGG
* * * *
67371527 CATGATCTTACATGATATCCTTATCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
67371574 CATGGTCTTACATGGTATCTTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
67371621 TATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
67371649 GTTCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:67371854 original size:44 final size:44
Alignment explanation
Indices: 67371787--67371871 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
67371777 ATCCTTAACT
* * *
67371787 GTCAATTCCTCTTTAAATGCCATGTTATGAA-CATGGAATTTTAC
1 GTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGAATTTTAC
* * *
67371831 GTCAATTCTTCCTTAATTTCCATGGTACAACCATGGAATTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGAATTT
67371872 GAGATATCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGAATTTTAC
Found at i:67374664 original size:43 final size:42
Alignment explanation
Indices: 67374598--67374745 Score: 176
Period size: 43 Copynumber: 3.5 Consensus size: 42
67374588 ATATCTCGAA
* * *
67374598 TATGGTCTTACATGTAATATCATATCGAAGCCAATAGCCTAGC
1 TATGGTCTTACACGTAATATCATA-CGATGCCAATAGCCCAGC
* *
67374641 TATGGTCTTACACGAAATCTCATAACGATGCC-AT-GTCCCAGAC
1 TATGGTCTTACACGTAATATCAT-ACGATGCCAATAG-CCCAG-C
67374684 -ATGGTCTTACACGTAATATCATACAGATGCCAATAGCCCAGC
1 TATGGTCTTACACGTAATATCATAC-GATGCCAATAGCCCAGC
*
67374726 TATGGTCTTACACGGAATAT
1 TATGGTCTTACACGTAATAT
67374746 TGTATCAATG
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
41 3 0.03
42 33 0.37
43 52 0.58
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
TATGGTCTTACACGTAATATCATACGATGCCAATAGCCCAGC
Found at i:67374727 original size:85 final size:86
Alignment explanation
Indices: 67374599--67374866 Score: 287
Period size: 85 Copynumber: 3.1 Consensus size: 86
67374589 TATCTCGAAT
* *
67374599 ATGGTCTTACATGTAATATCATATC-GAAGCCAATAGCCTAGCTATGGTCTTACACGAAATCTCA
1 ATGGTCTTACACGTAATATCATATCAGAAGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCA
67374663 TAACGATGCCATGTCCCAGAC
66 TAACGATGCCATGTCCCAGAC
* * * **
67374684 ATGGTCTTACACGTAATATCATA-CAGATGCCAATAGCCCAGCTATGGTCTTACACGGAATATTG
1 ATGGTCTTACACGTAATATCATATCAGAAGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCA
* *
67374748 TATCAATGCCATGTCCCAGAC
66 TAACGATGCCATGTCCCAGAC
* * * * *
67374769 ATGATCTTACAGGAAATATTATATCA-AAGCC-AT-GTCCCAGAC-ATGGTCTTACATGAAATCT
1 ATGGTCTTACACGTAATATCATATCAGAAGCCAATAG-CCCAG-CTATGGTCTTACACGAAATCT
* *
67374830 CATATGGTGCCGATGCTATGTCCCAGAC
64 CATA-----ACGATGCCATGTCCCAGAC
67374858 ATGGTCTTA
1 ATGGTCTTA
67374867 TGTGGGACCT
Statistics
Matches: 151, Mismatches: 23, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
83 1 0.01
84 26 0.17
85 98 0.65
86 2 0.01
89 24 0.16
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (86 bp):
ATGGTCTTACACGTAATATCATATCAGAAGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCA
TAACGATGCCATGTCCCAGAC
Found at i:67374757 original size:43 final size:42
Alignment explanation
Indices: 67374599--67374866 Score: 199
Period size: 42 Copynumber: 6.2 Consensus size: 42
67374589 TATCTCGAAT
* * *
67374599 ATGGTCTTACATGTAATATCATATCGAA-GCCAATAG-CCTAG-C
1 ATGGTCTTACACGGAATATCATATC-AATGCC-AT-GTCCCAGAC
* * * *
67374641 TATGGTCTTACACGAAATCTCATAACGATGCCATGTCCCAGAC
1 -ATGGTCTTACACGGAATATCATATCAATGCCATGTCCCAGAC
*
67374684 ATGGTCTTACACGTAATATCATA-CAGATGCCAATAG-CCCAG-C
1 ATGGTCTTACACGGAATATCATATCA-ATGCC-AT-GTCCCAGAC
**
67374726 TATGGTCTTACACGGAATATTGTATCAATGCCATGTCCCAGAC
1 -ATGGTCTTACACGGAATATCATATCAATGCCATGTCCCAGAC
* * *
67374769 ATGATCTTACA-GGAAATATTATATCAAAGCCATGTCCCAGAC
1 ATGGTCTTACACGG-AATATCATATCAATGCCATGTCCCAGAC
* * * * *
67374811 ATGGTCTTACATGAAATCTCATATGGTGCCGATGCTATGTCCCAGAC
1 ATGGTCTTACACGGAATATCATA---T--CAATGCCATGTCCCAGAC
67374858 ATGGTCTTA
1 ATGGTCTTA
67374867 TGTGGGACCT
Statistics
Matches: 186, Mismatches: 22, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
41 5 0.03
42 94 0.51
43 59 0.32
44 3 0.02
45 1 0.01
47 24 0.13
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGGAATATCATATCAATGCCATGTCCCAGAC
Found at i:67374879 original size:47 final size:48
Alignment explanation
Indices: 67374797--67374974 Score: 196
Period size: 48 Copynumber: 3.7 Consensus size: 48
67374787 TTATATCAAA
* ** *
67374797 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATA-TGGTGCCGAT
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCATATTGATGCCGAT
* * ** * * *
67374844 GCTATGTCCCAGACATGGTCTTATGTGGGACCTCATATTAATGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCATATTGATGCCGAT
* * *
67374892 GCCATATCCCAAATATGGTCTTACATGGGATCTCCTATTGATGCCGAT
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCATATTGATGCCGAT
* * *
67374940 GCGATATCCCAGAAATGGTCTTATATGGGATCTCA
1 GCCATATCCCAGACATGGTCTTACATGGGATCTCA
67374975 ATACTCACAC
Statistics
Matches: 106, Mismatches: 24, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
47 31 0.29
48 75 0.71
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGACATGGTCTTACATGGGATCTCATATTGATGCCGAT
Found at i:67374915 original size:95 final size:96
Alignment explanation
Indices: 67374797--67374974 Score: 241
Period size: 96 Copynumber: 1.9 Consensus size: 96
67374787 TTATATCAAA
* * * * * *
67374797 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATA-TGGTGCCGATGCTATGTCCCAGACATG
1 GCCATATCCCAAACATGGTCTTACATGAAATCTCATATTGATGCCGATGCGATATCCCAGAAATG
*
67374861 GTCTTATGTGGGACCTCATATTAATGCCAAT
66 GTCTTATATGGGACCTCATATTAATGCCAAT
* ** *
67374892 GCCATATCCCAAATATGGTCTTACATGGGATCTCCTATTGATGCCGATGCGATATCCCAGAAATG
1 GCCATATCCCAAACATGGTCTTACATGAAATCTCATATTGATGCCGATGCGATATCCCAGAAATG
*
67374957 GTCTTATATGGGATCTCA
66 GTCTTATATGGGACCTCA
67374975 ATACTCACAC
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
95 31 0.44
96 39 0.56
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (96 bp):
GCCATATCCCAAACATGGTCTTACATGAAATCTCATATTGATGCCGATGCGATATCCCAGAAATG
GTCTTATATGGGACCTCATATTAATGCCAAT
Found at i:67378760 original size:39 final size:40
Alignment explanation
Indices: 67378665--67378887 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
67378655 TTGAATGATG
* *
67378665 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-T
*
67378704 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
67378744 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
67378783 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
67378822 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
67378861 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67378888 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67378806 original size:78 final size:80
Alignment explanation
Indices: 67378665--67378887 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
67378655 TTGAATGATG
* * * * * *
67378665 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAACATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
67378727 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
67378744 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
67378805 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
67378822 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
67378887 G
66 G
67378888 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
78 46 0.37
79 57 0.45
80 22 0.17
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:67378909 original size:79 final size:79
Alignment explanation
Indices: 67378717--67378920 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 79
67378707 GGACTAAGAT
** * *
67378717 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
67378780 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
67378795 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
67378859 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
67378875 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
67378921 TACGTGATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.34
79 47 0.43
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:67383809 original size:27 final size:27
Alignment explanation
Indices: 67383713--67383828 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 27
67383703 TCTTATGTGA
* * **
67383713 TAAAATGTCCGAAATACCCTCACAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* *
67383740 TAAAATGACCGAAACACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* * *
67383767 TAGAATGACCAAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* * * * *
67383794 TAAAATGACTGTAATAACCCGGTAAGG
1 TAAAATGACCGAAATACCCCCGTAGGG
67383821 TAAAATGA
1 TAAAATGA
67383829 AATATTTGTT
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCGTAGGG
Found at i:67383907 original size:23 final size:23
Alignment explanation
Indices: 67383864--67383913 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
67383854 CTGTATTTGA
67383864 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
67383887 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
67383910 GCAT
1 GCAT
67383914 TGCATGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:67384200 original size:18 final size:18
Alignment explanation
Indices: 67384171--67384229 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
67384161 TTTGCTTGCA
*
67384171 TACTGAACTGATTACTGT
1 TACTGCACTGATTACTGT
* *
67384189 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
* *
67384207 TACTGCACTAATTTCTGT
1 TACTGCACTGATTACTGT
67384225 TACTG
1 TACTG
67384230 AAATAGGCTA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:67391670 original size:55 final size:54
Alignment explanation
Indices: 67391601--67391719 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
67391591 AGGCATACAT
** * *
67391601 ACTGACTTATCCACACAGCCACAAG-ACACGCCCGTGTGTCTAGCTCGTGGTCGAA
1 ACTGACTTGGCCACAC-G-CACAAGCACACGCCCATGTGTCTAGCCCGTGGTCGAA
** ** *
67391656 ACTGACTTGGCCACACGGTCTGGCACATGCCCATGTGTCTAGCCCGTGGTCGAA
1 ACTGACTTGGCCACACGCACAAGCACACGCCCATGTGTCTAGCCCGTGGTCGAA
67391710 ACTGACTTGG
1 ACTGACTTGG
67391720 TCGTACGGTC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
53 2 0.04
54 38 0.70
55 14 0.26
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (54 bp):
ACTGACTTGGCCACACGCACAAGCACACGCCCATGTGTCTAGCCCGTGGTCGAA
Found at i:67391704 original size:54 final size:54
Alignment explanation
Indices: 67391626--67391747 Score: 190
Period size: 54 Copynumber: 2.3 Consensus size: 54
67391616 CAGCCACAAG
*
67391626 ACACGCCCGTGTGTCTAGCTCGTGGTCGAAACTGACTTGGCCACACGGTCTGGC
1 ACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGGCCACACGGTCTGGC
* * * **
67391680 ACATGCCCATGTGTCTAGCCCGTGGTCGAAACTGACTTGGTCGTACGGTCTGGC
1 ACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGGCCACACGGTCTGGC
67391734 ACACGCCCGTGTGT
1 ACACGCCCGTGTGT
67391748 GCGTGACCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.24
Consensus pattern (54 bp):
ACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGGCCACACGGTCTGGC
Found at i:67393243 original size:42 final size:43
Alignment explanation
Indices: 67393195--67393291 Score: 124
Period size: 44 Copynumber: 2.3 Consensus size: 43
67393185 CCTAGACAGA
* * *
67393195 GTCTTACACGAAATCATATA-CGACGCCAACGTCCCAGACATG
1 GTCTTACACGAAATAAAAAATCGACGCCAACGTCCCAGACATG
* **
67393237 GTCTTACACGTAAATAAAAAATCGATGCCAACGTCCCAGATGTG
1 GTCTTACACG-AAATAAAAAATCGACGCCAACGTCCCAGACATG
67393281 GTCTTACACGA
1 GTCTTACACGA
67393292 TAACACATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 10 0.21
43 8 0.17
44 29 0.62
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.22
Consensus pattern (43 bp):
GTCTTACACGAAATAAAAAATCGACGCCAACGTCCCAGACATG
Found at i:67393276 original size:44 final size:44
Alignment explanation
Indices: 67393132--67393290 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 44
67393122 AGCTCGTACA
* ** * * *
67393132 ATGCCAATGTCCCAGATGTGATCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
** * *
67393175 ATGCCATTGTCCTAGACA-GAGTCTTACACG-AAATCATATA-CG
1 ATGCCAACGTCCCAGACATG-GTCTTACACGTAAATCAAATATCG
* * *
67393217 ACGCCAACGTCCCAGACATGGTCTTACACGTAAATAAAAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
**
67393261 ATGCCAACGTCCCAGATGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
67393291 ATAACACATA
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 26 0.28
43 38 0.41
44 29 0.31
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:67394610 original size:48 final size:48
Alignment explanation
Indices: 67394540--67394861 Score: 259
Period size: 48 Copynumber: 6.8 Consensus size: 48
67394530 AACCACATAT
* * * *
67394540 CGATACCATATCCCAGATATGGTCTTATAC-GAAGTCTCATATCGGTGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGGA-TCTCATATCGATGC
* * * *
67394588 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCACATCGATAC
1 CGATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATGC
** * * * *
67394636 TAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATTGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATGC
* *
67394684 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTC-T-T--A--A
1 CGATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATGC
* * * **
67394726 CAATGCCATGTCCCAGACATGGTTTTATACGAAATCATTCA-A-CGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGGATC--TCATATCGATGC
* ** * * * *
67394774 CGAAGCCATATCCTTGATATGGTCTTATACGGGATCACATCTTGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATGC
* * *
67394822 CGATTG-CATGTCCCAGACATGGTTTTACACGGGATCTCAT
1 CGA-TGCCATATCCCAGACATGGTCTTATACGGGATCTCAT
67394862 TAACCATGGT
Statistics
Matches: 212, Mismatches: 50, Indels: 24
0.74 0.17 0.08
Matches are distributed among these distances:
42 32 0.15
44 3 0.01
46 4 0.02
47 1 0.00
48 169 0.80
49 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (48 bp):
CGATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATGC
Found at i:67394774 original size:42 final size:42
Alignment explanation
Indices: 67394684--67394774 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
67394674 ATATTGATGC
** *
67394684 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCTTAA
1 CGATGCCATGTCCCAGACATGGTCTTATACGAAATCTCTCAA
* *
67394726 CAATGCCATGTCCCAGACATGGTTTTATACGAAATCAT-TCAA
1 CGATGCCATGTCCCAGACATGGTCTTATACGAAATC-TCTCAA
67394768 CGATGCC
1 CGATGCC
67394775 GAAGCCATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGAAATCTCTCAA
Found at i:67402481 original size:48 final size:47
Alignment explanation
Indices: 67402410--67402714 Score: 171
Period size: 48 Copynumber: 6.5 Consensus size: 47
67402400 GACCACATAT
* * *
67402410 CGATGCCATATCCTAGATATGGTCTTATACGAAGTCTCATATTGGTGC
1 CGATGCCATATCCCAGACATGGTCTTATACG-AGTCTCATATTGATGC
* * * *
67402458 CGATGCCATGTCCCAGCCATGGTCTTATAC-AGTACCTCACATCGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGAGT--CTCATATTGATGC
** * * * * * *
67402506 AAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGATGT
1 CGATGCCATATCCCAGACATGGTCTTATACGAG-TCTCATATTGATGC
* * *
67402554 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTC---TT-A--A
1 CGATGCCATATCCCAGACATGGTCTTATACGAG-TCTCATATTGATGC
* * * * *
67402596 CAATGCCATGTCCCAGACATGGTTTTATACGAAATCATTCA-A-CGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACG-AGTC--TCATATTGATGC
* ** * * * *
67402644 CGAAGCCATATCCTTGATATGGTCTTATACGGGATCACATCTTGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGAG-TCTCATATTGATGC
*
67402692 CGATTG-CATGTCCCAGACATGGT
1 CGA-TGCCATATCCCAGACATGGT
67402715 TTTACACGGG
Statistics
Matches: 191, Mismatches: 50, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
42 31 0.16
44 3 0.02
45 1 0.01
46 6 0.03
48 147 0.77
49 2 0.01
50 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCCATATCCCAGACATGGTCTTATACGAGTCTCATATTGATGC
Found at i:67402624 original size:138 final size:138
Alignment explanation
Indices: 67402460--67402735 Score: 337
Period size: 138 Copynumber: 2.0 Consensus size: 138
67402450 ATTGGTGCCG
* ** *
67402460 ATGCCATGTCCCAGCCATGGTCTTATACAGTACCTCA-CATCGATG-CAAATGCCATATCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTATAC-G-AAATCATCAACGATGCCAAA-GCCATATCCCAGA
* * * *
67402523 TATGGTCTTACATGGGATCTCATAC-TGATGTCGA-TGCCATGTCCCAGACATGGTCTTATACGG
63 TATGGTCTTACACGGGATCACAT-CTTGATGCCGATTG-CATGTCCCAGACATGGTCTTACACGG
67402586 GATCTC-TTAACA
126 GATCTCATTAACA
* * **
67402598 ATGCCATGTCCCAGACATGGTTTTATACGAAATCATTCAACGATGCCGAAGCCATATCCTTGATA
1 ATGCCATGTCCCAGACATGGTCTTATACGAAATCA-TCAACGATGCCAAAGCCATATCCCAGATA
* *
67402663 TGGTCTTATACGGGATCACATCTTGATGCCGATTGCATGTCCCAGACATGGTTTTACACGGGATC
65 TGGTCTTACACGGGATCACATCTTGATGCCGATTGCATGTCCCAGACATGGTCTTACACGGGATC
67402728 TCATTAAC
130 TCATTAAC
67402736 CATGGTGTCA
Statistics
Matches: 118, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
136 4 0.03
137 2 0.02
138 102 0.86
139 10 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (138 bp):
ATGCCATGTCCCAGACATGGTCTTATACGAAATCATCAACGATGCCAAAGCCATATCCCAGATAT
GGTCTTACACGGGATCACATCTTGATGCCGATTGCATGTCCCAGACATGGTCTTACACGGGATCT
CATTAACA
Found at i:67402644 original size:42 final size:42
Alignment explanation
Indices: 67402554--67402644 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
67402544 ATACTGATGT
** *
67402554 CGATGCCATGTCCCAGACATGGTCTTATACGGGATCTCTTAA
1 CGATGCCATGTCCCAGACATGGTCTTATACGAAATCTCTCAA
* *
67402596 CAATGCCATGTCCCAGACATGGTTTTATACGAAATCAT-TCAA
1 CGATGCCATGTCCCAGACATGGTCTTATACGAAATC-TCTCAA
67402638 CGATGCC
1 CGATGCC
67402645 GAAGCCATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGAAATCTCTCAA
Found at i:67410170 original size:49 final size:49
Alignment explanation
Indices: 67410117--67410348 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
67410107 CTGGTATGCA
* *
67410117 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
67410166 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
67410216 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
67410267 TAGTATCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
67410316 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
67410349 TCATAATAGA
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 71 0.46
50 47 0.30
51 37 0.24
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:67410625 original size:27 final size:27
Alignment explanation
Indices: 67410595--67410648 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
67410585 TCATACAACC
* *
67410595 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
67410622 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
67410649 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:67413967 original size:46 final size:46
Alignment explanation
Indices: 67413909--67414130 Score: 136
Period size: 46 Copynumber: 4.8 Consensus size: 46
67413899 GGACTATTGT
* *
67413909 GAGCTAGTGTAAGGCATGTCTGGGACATGCATCGGCCACATTACTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACTA
* * * *
67413955 GAGCCAGTGTAAGACCATGT-TCGGGACATGTCATTGG-CA-GTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCT-GGGACATG-CATCGGCCACAT--TACTA
* * * ** * *
67414003 GAGCTAGCGTAAGACATGTCTGAGACATGCATCAACCTCGAGATA-TA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTACTA
* * *
67414050 -AGCCAGTGTAAGACATGTCCGGGACATGCATCGGCTACGAGT--TA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTACTA
* *
67414094 -AGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
67414131 ATACTATCCC
Statistics
Matches: 137, Mismatches: 27, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
44 14 0.10
45 15 0.11
46 57 0.42
47 29 0.21
48 22 0.16
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACTA
Found at i:67419191 original size:48 final size:47
Alignment explanation
Indices: 67419084--67419240 Score: 126
Period size: 47 Copynumber: 3.3 Consensus size: 47
67419074 CGGTTAATGA
* * **
67419084 TACCATGTAAGACCATGTCAAGACATGGCATCGGCATTATTAAGGAC
1 TACCATGTAAGACCATATCAAGACATGGCATCGGCATAAACAAGGAC
** *
67419131 T-CCATGTAAGACCATATCAAGATGTGGCATTGGCACTAAGACAAGG-C
1 TACCATGTAAGACCATATCAAGACATGGCATCGGCA-TAA-ACAAGGAC
* *** *
67419178 TACCATGTAAGACCATGTTTGGAACATGGCATTTGG--TAAGACAAGGA-
1 TACCATGTAAGACCATATCAAG-ACATGGCA-TCGGCATAA-ACAAGGAC
67419225 TACCATGTAAGACCAT
1 TACCATGTAAGACCAT
67419241 GTTTGGAACA
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
46 30 0.33
47 31 0.34
48 20 0.22
49 6 0.07
50 4 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (47 bp):
TACCATGTAAGACCATATCAAGACATGGCATCGGCATAAACAAGGAC
Found at i:67419229 original size:47 final size:47
Alignment explanation
Indices: 67419167--67419289 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
67419157 GCATTGGCAC
* *
67419167 TAAGACAAGGCTACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
67419214 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
67419261 TAAGATAAGGATATCATGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
67419290 CAAGGCATGG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:67419331 original size:54 final size:54
Alignment explanation
Indices: 67419267--67419672 Score: 395
Period size: 54 Copynumber: 7.6 Consensus size: 54
67419257 TTGGTAAGAT
* * * *
67419267 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTTATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
67419321 AAGGAAATCATGTAAGACCATTTCAAGACATGGCATTGATGAGTTGCTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * *
67419377 AAGG-TCCCAAGTAAGACCATGTCAAGACATGGCATTGGTGAGTTC-ATAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* *** **
67419429 AAGGATACCATGTAATACCATGTTTGGAACATGGCATT--TG-G-----TAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTCTATAAGGC
* * * * *
67419476 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTTATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
67419530 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * * *
67419586 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
67419638 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
67419673 ATGGTAAGTT
Statistics
Matches: 289, Mismatches: 48, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
46 9 0.03
47 26 0.09
48 1 0.00
49 1 0.00
51 1 0.00
52 10 0.03
53 53 0.18
54 96 0.33
55 84 0.29
56 8 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:67419574 original size:209 final size:209
Alignment explanation
Indices: 67419214--67419660 Score: 795
Period size: 209 Copynumber: 2.1 Consensus size: 209
67419204 TGGCATTTGG
67419214 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
* *
67419279 TAAGACCATGTCAAGGCATGGCATTTATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATTT
66 TAAGACCATGCCAAGGCATGGCATTTATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
* *
67419344 CAAGACATGGCATTGATGAGTTGCTATAAGGAAAAGGTCCCAAGTAAGACCATGTCAAGACATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCAAGTAAGACCATGCCAAGACATGG
67419409 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
* *
67419423 TAAGACAAGGATACCATGTAATACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
67419488 TAAGACCATGCCAAGGCATGGCATTTATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAGACCATGCCAAGGCATGGCATTTATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
* *
67419553 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCAAGTAAGACCATGCCAAGACATGG
67419618 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
** *
67419632 TAAGGTAAGGATACCACGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
67419661 CAAGACATGG
Statistics
Matches: 226, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 226 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (209 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTTATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCAAGTAAGACCATGCCAAGACATGG
CATTGGTGAGTTCA
Found at i:67419624 original size:154 final size:154
Alignment explanation
Indices: 67419321--67419621 Score: 358
Period size: 155 Copynumber: 1.9 Consensus size: 154
67419311 TCTATAAGGC
** * **
67419321 AAGGAAATCATGTAAGACCATTTCAAGACATGGCATTGATGAGTTGCTATAAGGAAAAGGTCCCA
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTGCTATAAGGAAAAGGAACCA
* * *
67419386 AGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGACAAGGATACCATGTAATACCATG
66 AGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGAAAAGGATACCATGTAAGACCATG
***
67419451 TTTGGAACATGGCATTTGGTAAGAT
131 CAAGG-ACATGGCATTTGGTAAGAT
* * * * *
67419476 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTTATAAGTT-CTATAAGG-CAAGGAAATC
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTGCTATAAGGAAAAGG-AACC
* *
67419539 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGG-TCCCATGTAAGAC
65 AAGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAA-GAAAAGGATACCATGTAAGAC
67419603 CATGCCAAGG-CATGGCATT
127 CATG-CAAGGACATGGCATT
67419622 GGTGAGTTCA
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
153 4 0.03
154 43 0.35
155 49 0.40
156 19 0.15
157 8 0.07
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (154 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTGCTATAAGGAAAAGGAACCA
AGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGAAAAGGATACCATGTAAGACCATG
CAAGGACATGGCATTTGGTAAGAT
Found at i:67422389 original size:46 final size:46
Alignment explanation
Indices: 67422161--67422379 Score: 348
Period size: 46 Copynumber: 4.8 Consensus size: 46
67422151 TATATATACA
** *
67422161 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
* *
67422207 CATCTCATACACGTTTCTCATTAGCCATTCGGTTTTACCTCATATC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
67422253 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
* * *
67422299 CATCTCATACATGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
* *
67422345 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTT
67422380 CGCCACATAT
Statistics
Matches: 160, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 160 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
Found at i:67422432 original size:22 final size:22
Alignment explanation
Indices: 67422406--67422481 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
67422396 TTCCACGTTC
67422406 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
67422428 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
67422452 CATCACATTGGCCATTC-AGCCTT
1 -ATCACATTGGCCATTCTA-CCTT
67422475 ATCACAT
1 ATCACAT
67422482 ATATGCATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 10 0.24
25 7 0.17
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:67422434 original size:47 final size:47
Alignment explanation
Indices: 67422403--67422596 Score: 318
Period size: 47 Copynumber: 4.1 Consensus size: 47
67422393 CACTTCCACG
*
67422403 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
67422450 TTCATCACATTGGCCATTC-AGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGA-CCTTATCACATATATGCATGTTCACA
* * *
67422497 TTCATCACATTGGCCATTCGGCCTTATCACGTACATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
* *
67422544 TTCATCACATTGGCCATTCGGCCTTATCCCATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
67422591 TTCATC
1 TTCATC
67422597 TCATAAAATC
Statistics
Matches: 139, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.01
47 138 0.99
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
Found at i:67422503 original size:25 final size:25
Alignment explanation
Indices: 67422428--67422506 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
67422418 ATTCTACCTT
67422428 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
* *
67422453 ATCACAT-T-GGCCA--TTCAGCCTT-
1 ATCACATATATG-CATGTTCA-CATTC
67422475 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
67422500 ATCACAT
1 ATCACAT
67422507 TGGCCATTCG
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
22 11 0.26
23 7 0.16
24 7 0.16
25 18 0.42
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:67427122 original size:40 final size:40
Alignment explanation
Indices: 67427039--67427301 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
67427029 TTGAATGCTG
* * * * * *
67427039 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67427079 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67427119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67427159 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67427199 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67427239 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67427278 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67427302 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67427321 original size:79 final size:80
Alignment explanation
Indices: 67427078--67427336 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
67427068 AAGTGAATAT
* * * * * *
67427078 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
67427142 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
67427158 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
67427223 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
67427238 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
67427302 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
67427317 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
67427337 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:67435031 original size:40 final size:40
Alignment explanation
Indices: 67434948--67435250 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
67434938 TTGAATGCTG
* * * * * *
67434948 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67434988 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67435028 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67435068 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67435108 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67435148 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67435188 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67435227 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67435251 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67436880 original size:21 final size:21
Alignment explanation
Indices: 67436854--67436900 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
67436844 TCATAACACT
67436854 GAGGAGGCCACGTGGGAGCCA
1 GAGGAGGCCACGTGGGAGCCA
*
67436875 GAGGAGGCCACGTGGGAGCTA
1 GAGGAGGCCACGTGGGAGCCA
67436896 GAGGA
1 GAGGA
67436901 TGTGATGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.49, T:0.06
Consensus pattern (21 bp):
GAGGAGGCCACGTGGGAGCCA
Found at i:67449691 original size:46 final size:44
Alignment explanation
Indices: 67449623--67449725 Score: 136
Period size: 46 Copynumber: 2.3 Consensus size: 44
67449613 GACGAGAGCT
* * *
67449623 AGTGTAAGACATGTTTGGGACATGCATCAGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGAGACATGCATC-GACTACGAG-T-TAAGCC
*
67449669 AGTGTAAGACATGTCTGAGACATGCATCGACTACGAGTTAAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGACTACGAGTTAAGCC
67449713 AGTGTAAGACATG
1 AGTGTAAGACATG
67449726 GCATCGGCAT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
44 18 0.35
45 4 0.08
46 30 0.58
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGAGACATGCATCGACTACGAGTTAAGCC
Found at i:67452285 original size:45 final size:44
Alignment explanation
Indices: 67452187--67452288 Score: 118
Period size: 45 Copynumber: 2.3 Consensus size: 44
67452177 TTATCTACAT
* *
67452187 TATTTTGTTGTGTTTCCATTGCCATAGGCAAATTCCATCTGCGA
1 TATTTTGTTGTGTTCCCAATGCCATAGGCAAATTCCATCTGCGA
* *
67452231 TGATCTTGTTGTGTTCCCACAT-CCATAGGCAGATTCCATCTGCGGCA
1 T-ATTTTGTTGTGTTCCCA-ATGCCATAGGCAAATTCCATCTGC-G-A
67452278 T-TTTTGTTGTG
1 TATTTTGTTGTG
67452289 CAATCACAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
44 1 0.02
45 44 0.90
46 2 0.04
47 2 0.04
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.40
Consensus pattern (44 bp):
TATTTTGTTGTGTTCCCAATGCCATAGGCAAATTCCATCTGCGA
Found at i:67452484 original size:17 final size:17
Alignment explanation
Indices: 67452462--67452496 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
67452452 TATTGGTAGT
67452462 TAAACCACAATCTGGTG
1 TAAACCACAATCTGGTG
67452479 TAAACCACAATCTGGTG
1 TAAACCACAATCTGGTG
67452496 T
1 T
67452497 GTTGGTGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (17 bp):
TAAACCACAATCTGGTG
Found at i:67453840 original size:28 final size:29
Alignment explanation
Indices: 67453796--67453850 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
67453786 TTTTCACAAA
*
67453796 TTTAAAATTTAATTTATGTA-TTTTTATT
1 TTTAAAATTTAAGTTATGTACTTTTTATT
*
67453824 TTTAAGAATTT-AGTTATTTACTTTTTA
1 TTTAA-AATTTAAGTTATGTACTTTTTA
67453851 AATATTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (29 bp):
TTTAAAATTTAAGTTATGTACTTTTTATT
Found at i:67456858 original size:6 final size:6
Alignment explanation
Indices: 67456847--67456878 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
67456837 AAAAAATAAC
67456847 AATTAT AATTAT AATTAT AATTAT AATTAT AA
1 AATTAT AATTAT AATTAT AATTAT AATTAT AA
67456879 AAAGTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTAT
Found at i:67457439 original size:18 final size:18
Alignment explanation
Indices: 67457416--67457458 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
67457406 CTTGATAAAA
67457416 TTGAGGTGGAGGGTATAT
1 TTGAGGTGGAGGGTATAT
67457434 TTGAGGTGGAGGGTATAT
1 TTGAGGTGGAGGGTATAT
67457452 TTGAGGT
1 TTGAGGT
67457459 TGATGATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (18 bp):
TTGAGGTGGAGGGTATAT
Found at i:67462970 original size:31 final size:28
Alignment explanation
Indices: 67462932--67463036 Score: 102
Period size: 31 Copynumber: 3.5 Consensus size: 28
67462922 TAATCACATT
67462932 AATATTAAATTAATAAAATATTGCCAAGATA
1 AATATTAAATTAATAAAATA-T-CC-AGATA
* * *
67462963 AATATTAAATTAAATTAAATATCTCATATT
1 AATATTAAATT-AATAAAATATC-CAGATA
*
67462993 AATATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAAT-AAA-A-TATCCAGATA
67463024 AATATTAAATTAA
1 AATATTAAATTAA
67463037 ATTTAATATC
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
29 3 0.05
30 17 0.27
31 30 0.48
32 12 0.19
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (28 bp):
AATATTAAATTAATAAAATATCCAGATA
Found at i:67463009 original size:61 final size:61
Alignment explanation
Indices: 67462929--67463058 Score: 206
Period size: 61 Copynumber: 2.1 Consensus size: 61
67462919 AATTAATCAC
* *
67462929 ATTAATATTAAATTAATAAAATATTGCCAAGATAAATATTAAATTAAATTAAATATCTCAT
1 ATTAATATTAAATTAATAAAATACTACCAAGATAAATATTAAATTAAATTAAATATCTCAT
* * *
67462990 ATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATATCTCAT
1 ATTAATATTAAATTAATAAAATACTACCAAGATAAATATTAAATTAAATTAAATATCTCAT
*
67463051 TTTAATAT
1 ATTAATAT
67463059 CTAGATAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (61 bp):
ATTAATATTAAATTAATAAAATACTACCAAGATAAATATTAAATTAAATTAAATATCTCAT
Found at i:67465471 original size:49 final size:49
Alignment explanation
Indices: 67465399--67465497 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
67465389 ACCATTACAT
67465399 AACCACCAGCCTAAGTTTTAATATGCATGCATGATTACTACAAGAAATG
1 AACCACCAGCCTAAGTTTTAATATGCATGCATGATTACTACAAGAAATG
67465448 AACCACCAGCCTAAGTTTTAATATGCATGCATGATTACTACAAGAAATG
1 AACCACCAGCCTAAGTTTTAATATGCATGCATGATTACTACAAGAAATG
67465497 A
1 A
67465498 TTATGCAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (49 bp):
AACCACCAGCCTAAGTTTTAATATGCATGCATGATTACTACAAGAAATG
Found at i:67465862 original size:29 final size:29
Alignment explanation
Indices: 67465830--67465888 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
67465820 TTCCAATGAG
*
67465830 TATATTTATGTCTCTACCTGCAGAATCAA
1 TATATTTATGTCTCTACCTACAGAATCAA
*
67465859 TATATTTATGTCTCTACCTACGGAATCAA
1 TATATTTATGTCTCTACCTACAGAATCAA
67465888 T
1 T
67465889 TGTTCTGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (29 bp):
TATATTTATGTCTCTACCTACAGAATCAA
Found at i:67467952 original size:29 final size:27
Alignment explanation
Indices: 67467911--67467984 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 27
67467901 ATACTAGGGA
67467911 CCTTTTTATTTTATTTT-TTTCATTAGAT
1 CCTTTTTATTTTATTTTATTT-ATT-GAT
**
67467939 CCTTTTTCATTTTATTTCTATTTATTTTT
1 CCTTTTT-ATTTTATTT-TATTTATTGAT
67467968 CCTTTTTATTTTATTTT
1 CCTTTTTATTTTATTTT
67467985 GTTTTCTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 1 0.02
28 16 0.39
29 17 0.41
30 4 0.10
31 3 0.07
ACGTcount: A:0.15, C:0.12, G:0.01, T:0.72
Consensus pattern (27 bp):
CCTTTTTATTTTATTTTATTTATTGAT
Found at i:67467966 original size:22 final size:22
Alignment explanation
Indices: 67467941--67467983 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
67467931 CATTAGATCC
67467941 TTTTT-CATTTTATTTCTATTTA
1 TTTTTCCATTTTATTT-TATTTA
*
67467963 TTTTTCCTTTTTATTTTATTT
1 TTTTTCCATTTTATTTTATTT
67467984 TGTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTTCCATTTTATTTTATTTA
Found at i:67470375 original size:19 final size:19
Alignment explanation
Indices: 67470351--67470456 Score: 150
Period size: 19 Copynumber: 5.8 Consensus size: 19
67470341 TCATATCTTT
*
67470351 TAAGATTGCATATCATATA
1 TAAGATTGCATATCATATC
67470370 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
67470387 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
67470406 TAAGATTGCA-ATCATTTC
1 TAAGATTGCATATCATATC
67470424 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
67470441 TAATATTGCATATCAT
1 TAAGATTGCATATCAT
67470457 TGAAGATTAT
Statistics
Matches: 78, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
17 30 0.38
18 15 0.19
19 33 0.42
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:67470428 original size:54 final size:55
Alignment explanation
Indices: 67470351--67470456 Score: 178
Period size: 54 Copynumber: 1.9 Consensus size: 55
67470341 TCATATCTTT
67470351 TAAGATTGCATATCATATATAAGATTGTATCATATCTAAGATTGCATATCATATC
1 TAAGATTGCATATCATATATAAGATTGTATCATATCTAAGATTGCATATCATATC
* * *
67470406 TAAGATTGCA-ATCATTTCTAAGATTGTATCATATCTAATATTGCATATCAT
1 TAAGATTGCATATCATATATAAGATTGTATCATATCTAAGATTGCATATCAT
67470457 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
54 38 0.79
55 10 0.21
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (55 bp):
TAAGATTGCATATCATATATAAGATTGTATCATATCTAAGATTGCATATCATATC
Found at i:67471015 original size:87 final size:87
Alignment explanation
Indices: 67470851--67471015 Score: 197
Period size: 87 Copynumber: 1.9 Consensus size: 87
67470841 ACAATACAGA
* ** * *
67470851 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAATCACGTGAAAGCCAAATCTGCTGTGTCTTCG
1 GATGCCAAATCATCTTAGATCTACTTCAGCAAAATCACGTGAAAGCCAAATCTGCTATGTCTTCA
*
67470916 ATTTGCTCCTTGTGAACACAAG
66 ATCTGCTCCTTGTGAACACAAG
* * * * * *
67470938 GATGCCAAATCATCTTGGATCTACTTCAGTAAAATCATC-TGAAGGTCAGATCTGCTATGTCTTT
1 GATGCCAAATCATCTTAGATCTACTTCAGCAAAATCA-CGTGAAAGCCAAATCTGCTATGTCTTC
*
67471002 AATCTGCTTCTTGT
65 AATCTGCTCCTTGT
67471016 AAACTTATGA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (87 bp):
GATGCCAAATCATCTTAGATCTACTTCAGCAAAATCACGTGAAAGCCAAATCTGCTATGTCTTCA
ATCTGCTCCTTGTGAACACAAG
Found at i:67471205 original size:261 final size:256
Alignment explanation
Indices: 67470735--67471253 Score: 691
Period size: 261 Copynumber: 2.0 Consensus size: 256
67470725 TCGAATCATG
* *
67470735 GTCTTCAATCTGCTCATTGGAAACTCAAGACTGTCATGTTAATATCTTTGATCTGCTCTCCATCG
1 GTCTTCAATCTGCTCATTGGAAACTCAAGACTGTCATGTTAATATCTTCGATCTGCTCTCCACCG
* * * * *
67470800 AACATAGAGACGCCAAATCTGCTTCTTCGATTTATTTTTTGACAATACAGAGATGCCAAATCATC
66 AACACAGAGACGCCAAATCTGCTTCTTCAATTTATTCTCTAACAATACAGAGATGCCAAATCATC
* * * * * * *
67470865 TTAGATCTGCTTCAGCGTAATCACGTGAAAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTG
131 TTAGATCTGCTTCAGCATAAGCACGCGAAAACCAAATCAGCTATGCCTTCGATTTGCTCCTTGTG
* *
67470930 AACACAAGGATGCCAAATCATCTTGGATCTACTTCAGTAAAATCATCTGAAGGTCAGATCTGCTA
196 AACACAAGGATGCCAAACCATCTTGGATATACTTCAG-----TCATCTGAAGGTCAGATCTGCTA
67470995 T
256 T
* * * * * * *
67470996 GTCTTTAATCTGCTTC-TTGTAAACTTATGACTGTCCTGTTGATATCTTCGATCTGCTCTCCGCC
1 GTCTTCAATCTGC-TCATTGGAAACTCAAGACTGTCATGTTAATATCTTCGATCTGCTCTCCACC
* * *
67471060 GAATACAGAGACGCCAAATCTGTTTCTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCAT
65 GAACACAGAGACGCCAAATCTGCTTCTTCAATTTATTCTCTAACAATACAGAGATGCCAAATCAT
* *
67471125 CTTAGATTTGCTTCAGCATAAGCACGCGAAAACCAAATCAGCTATGCCTTCGATTTGTTCCTTGT
130 CTTAGATCTGCTTCAGCATAAGCACGCGAAAACCAAATCAGCTATGCCTTCGATTTGCTCCTTGT
* *
67471190 -AAGCACAAGGATGCCAAACCATCTTGGATATGCTTCAGTCATCTGAAGGTTAGATCTGCTAT
195 GAA-CACAAGGATGCCAAACCATCTTGGATATACTTCAGTCATCTGAAGGTCAGATCTGCTAT
67471252 GT
1 GT
67471254 ATCTGCTCTC
Statistics
Matches: 226, Mismatches: 30, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
256 25 0.11
260 2 0.01
261 197 0.87
262 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (256 bp):
GTCTTCAATCTGCTCATTGGAAACTCAAGACTGTCATGTTAATATCTTCGATCTGCTCTCCACCG
AACACAGAGACGCCAAATCTGCTTCTTCAATTTATTCTCTAACAATACAGAGATGCCAAATCATC
TTAGATCTGCTTCAGCATAAGCACGCGAAAACCAAATCAGCTATGCCTTCGATTTGCTCCTTGTG
AACACAAGGATGCCAAACCATCTTGGATATACTTCAGTCATCTGAAGGTCAGATCTGCTAT
Found at i:67471539 original size:205 final size:205
Alignment explanation
Indices: 67471085--67472243 Score: 1879
Period size: 205 Copynumber: 5.7 Consensus size: 205
67471075 AAATCTGTTT
* * *
67471085 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
67471150 GCGAAAACCAAATCAGCTATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
67471215 GGATATGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
67471275 AGATGCCAGA
196 AGATGCCAGA
* * * *
67471285 CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
67471350 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
67471415 GGATTTGATTCAGTATAAACATCTGAAGGTTACATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
67471480 AGATGCCAGA
196 AGATGCCAGA
* * *
67471490 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
67471555 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
67471620 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCTGTTGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
67471685 AGATGCCAGA
196 AGATGCCAGA
*
67471695 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA----CTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
67471756 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
67471821 GGATCTGCTTCAGTATAAACATCTGAAGCTTAGATCTGCTATGTATCTACTCTTCGCCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
67471886 AGATGCCGGA
196 AGATGCCAGA
* * * *
67471896 CTTCGATTTGTTATTTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
67471961 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
67472026 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTTGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
67472091 AGATG-CAAA
196 AGATGCCAGA
*
67472100 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCGTCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
67472165 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACTATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
67472230 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
67472244 CCAGATCTGC
Statistics
Matches: 891, Mismatches: 58, Indels: 15
0.92 0.06 0.02
Matches are distributed among these distances:
200 131 0.15
201 189 0.21
202 1 0.00
204 127 0.14
205 443 0.50
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:67471928 original size:406 final size:407
Alignment explanation
Indices: 67471085--67472243 Score: 1864
Period size: 406 Copynumber: 2.8 Consensus size: 407
67471075 AAATCTGTTT
* *
67471085 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCAATTTGTTATCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
67471150 GCGAAAACCAAATCAGCTATGCCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
67471215 GGATATGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGG
* *
67471275 AGATGCCAGACTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA
196 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA--T-CTTCA
* * * *
67471340 TCATAAGCACATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCC
258 GCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCC
* * * *
67471405 AAACCATCTTGGATTTGATTCAGTATAAACATCTGAAGGTTACATCTGCTATGTATCTGCTCTCC
323 AAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTACATCTGCTATGTATCTACTCTCC
*
67471470 GTCGAAATGGAGATGCCAGA
388 GCCGAAATGGAGATGCCAGA
* *
67471490 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCAATTTGTTATCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
67471555 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
67471620 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCTGTTGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGG
67471685 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA-CTTCAGCG
196 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTTCAGCG
*
67471749 TAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
261 TAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
* *
67471814 CCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTAGATCTGCTATGTATCTACTCTTCGCC
326 CCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTACATCTGCTATGTATCTACTCTCCGCC
*
67471879 GAAATGGAGATGCCGGA
391 GAAATGGAGATGCCAGA
* * * * *
67471896 CTTCGATTTGTTATTTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCAATTTGTTATCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
67471961 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
67472026 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTTGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGG
* *
67472091 AGATG-CAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCGTCTTAGATTTGCTTCA
196 AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA--T-CTTCA
* * *
67472155 GCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCC
258 GCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCC
*
67472220 AAACTATCTTGGATCTTGCTTCAG
323 AAACCATCTTGGATC-TGCTTCAG
67472244 CCAGATCTGC
Statistics
Matches: 704, Mismatches: 40, Indels: 15
0.93 0.05 0.02
Matches are distributed among these distances:
405 185 0.26
406 332 0.47
407 1 0.00
409 80 0.11
410 106 0.15
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (407 bp):
CTTCAATTTGTTATCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGG
AGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTTCAGCG
TAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
CCATCTTGGATCTGCTTCAGTATAAACATCTGAAGCTTACATCTGCTATGTATCTACTCTCCGCC
GAAATGGAGATGCCAGA
Found at i:67473223 original size:19 final size:19
Alignment explanation
Indices: 67473190--67473242 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
67473180 TCCATTTTTC
* *
67473190 TTTTTTTTTTATTTTTATA
1 TTTTTTTTCTCTTTTTATA
* *
67473209 TTTTTTTTCTCTTTTTCTC
1 TTTTTTTTCTCTTTTTATA
*
67473228 TTCTTTTTC-CTTTTT
1 TTTTTTTTCTCTTTTT
67473243 TTTTTGAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTTTCTCTTTTTATA
Found at i:67480042 original size:23 final size:21
Alignment explanation
Indices: 67480012--67480055 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
67480002 AAATTAAATC
67480012 TCTAAGATTACAAAATCATATCT
1 TCTAAGATT-C-AAATCATATCT
*
67480035 TCTAAGATTCATATCATATCT
1 TCTAAGATTCAAATCATATCT
67480056 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTAAGATTCAAATCATATCT
Found at i:67480103 original size:14 final size:15
Alignment explanation
Indices: 67480048--67480157 Score: 78
Period size: 17 Copynumber: 6.5 Consensus size: 15
67480038 AAGATTCATA
67480048 TCATATCTAAGATTG
1 TCATATCTAAGATTG
67480063 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
67480081 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
67480098 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
*
67480117 CAATCATTTCTAAGATTG
1 ---TCATATCTAAGATTG
67480135 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
67480152 -CATATC
1 TCATATC
67480158 ATTGAAGATT
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
14 6 0.07
17 31 0.37
18 30 0.36
19 17 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Done.