Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 202 of 320
Found at i:67480113 original size:54 final size:54
Alignment explanation
Indices: 67480035--67480159 Score: 234
Period size: 54 Copynumber: 2.3 Consensus size: 54
67480025 AATCATATCT
67480035 TCTAAGATT-CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
67480088 TCTAAGATTGCATATCATATCTAAGATTGCAATCATTTCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
67480142 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
67480160 TGAAGATTAT
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
53 9 0.13
54 61 0.87
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:67480152 original size:35 final size:37
Alignment explanation
Indices: 67480035--67480159 Score: 188
Period size: 35 Copynumber: 3.5 Consensus size: 37
67480025 AATCATATCT
*
67480035 TCTAAGATT-CATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCTATCATA
67480071 TCTAAGATTG--TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGC-TATCATA
*
67480107 TCTAAGATTGCA-ATCATTTCTAAGATTG-TATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCTATCATA
67480142 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
67480160 TGAAGATTAT
Statistics
Matches: 82, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
35 37 0.45
36 30 0.37
37 15 0.18
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
TCTAAGATTGCATATCATATCTAAGATTGCTATCATA
Found at i:67480167 original size:17 final size:19
Alignment explanation
Indices: 67480035--67480159 Score: 192
Period size: 18 Copynumber: 6.9 Consensus size: 19
67480025 AATCATATCT
67480035 TCTAAGATT-CATATCATA
1 TCTAAGATTGCATATCATA
67480053 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
67480071 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
67480088 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
67480107 TCTAAGATTGCA-ATCATT
1 TCTAAGATTGCATATCATA
67480125 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
67480142 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
67480160 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 2, Indels: 13
0.87 0.02 0.12
Matches are distributed among these distances:
17 31 0.32
18 40 0.41
19 27 0.28
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:67485585 original size:44 final size:42
Alignment explanation
Indices: 67485535--67485693 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
67485525 TATGTGTTTT
*
67485535 CGTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGA-TT-TGATTTA
* * *
67485579 CGTGTAAGGCCATGTCTGGGATATCGGCATCGTATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCG-ATTTGATTTA
* * * * *
67485621 TGTGTAAGACCCTATCTGGGACAATGGCATTGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCG--ATTTGATTTA
* * **
67485664 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
67485694 TGTACGACCT
Statistics
Matches: 92, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 26 0.28
43 35 0.38
44 30 0.33
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATTTGATTTA
Found at i:67485639 original size:42 final size:43
Alignment explanation
Indices: 67485531--67485643 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 43
67485521 CCGATATGTG
* *
67485531 TTTTCGTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGA
1 TTTT-GTGTAAGACCATGTCTGGGACATCGGCATCGACTTATGA
* * *
67485575 TTTACGTGTAAGGCCATGTCTGGGATATCGGCATCGTA-TT-TGA
1 TTT-TGTGTAAGACCATGTCTGGGACATCGGCATCG-ACTTATGA
* *
67485618 TTTTGTGTAAGACCCTATCTGGGACA
1 TTTTGTGTAAGACCATGTCTGGGACA
67485644 ATGGCATTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 18 0.32
43 6 0.11
44 32 0.56
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (43 bp):
TTTTGTGTAAGACCATGTCTGGGACATCGGCATCGACTTATGA
Found at i:67513750 original size:25 final size:25
Alignment explanation
Indices: 67513722--67513800 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
67513712 CTAATAGCCG
67513722 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
67513747 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
67513769 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67513794 ATGTGAT
1 ATGTGAT
67513801 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67513772 original size:47 final size:47
Alignment explanation
Indices: 67513706--67513897 Score: 276
Period size: 47 Copynumber: 4.1 Consensus size: 47
67513696 GAAATGATAG
* *
67513706 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
*
67513753 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
67513800 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
*** * * * * * *
67513847 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
67513894 TAAG
1 TAAG
67513898 TCCCGAAGGG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
Found at i:67514072 original size:37 final size:37
Alignment explanation
Indices: 67514016--67514094 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
67514006 CCGAGCTCTA
* *
67514016 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
67514053 AAGACCCTATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67514090 AAGAC
1 AAGAC
67514095 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67516024 original size:29 final size:29
Alignment explanation
Indices: 67515989--67516062 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
67515979 GTTGTGAGAT
* *
67515989 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
67516018 TGGCACTAAGTGTGCAAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67516047 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67516063 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67516465 original size:40 final size:40
Alignment explanation
Indices: 67516375--67516557 Score: 189
Period size: 39 Copynumber: 4.6 Consensus size: 40
67516365 TCGAATGATG
* * *
67516375 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
67516414 ATCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67516455 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
67516494 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
67516532 AACCGGGCTAAGTCCCGAAGAGCATT
1 -TCCGGGCTAAGTCCCGAAG-GCATT
67516558 CATGCTAGTG
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 59 0.49
40 51 0.42
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:67516578 original size:40 final size:40
Alignment explanation
Indices: 67516375--67516755 Score: 375
Period size: 40 Copynumber: 9.6 Consensus size: 40
67516365 TCGAATGATG
* *
67516375 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
67516415 TCAGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * * *
67516454 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * *
67516494 TCCGGGTTAAGTCCCGAAG-GCATTTGTG-TAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* * *
67516533 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
67516573 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
67516613 TCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
67516653 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * *
67516693 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
67516733 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
67516756 ATCATGCTGG
Statistics
Matches: 295, Mismatches: 38, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
39 61 0.21
40 221 0.75
41 13 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:67520216 original size:25 final size:25
Alignment explanation
Indices: 67520188--67520266 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
67520178 CTAATAGCCG
67520188 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
67520213 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
67520235 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67520260 ATGTGAT
1 ATGTGAT
67520267 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67520238 original size:47 final size:47
Alignment explanation
Indices: 67520172--67520363 Score: 267
Period size: 47 Copynumber: 4.1 Consensus size: 47
67520162 GAAATGATAG
* * *
67520172 TAAGGTCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
*
67520219 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
67520266 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
*** * * * * * *
67520313 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
67520360 TAAG
1 TAAG
67520364 TCCCGAAGGG
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
Found at i:67520538 original size:37 final size:37
Alignment explanation
Indices: 67520482--67520560 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67520472 CCGAGCTCTA
* *
67520482 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
67520519 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67520556 AAGAC
1 AAGAC
67520561 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67526686 original size:29 final size:29
Alignment explanation
Indices: 67526644--67526702 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
67526634 TAGAGTGATG
67526644 AAAGAATTGTGAACAAAGGAAAAGAAGTA
1 AAAGAATTGTGAACAAAGGAAAAGAAGTA
67526673 AAAGAATTGTGAACAAAGGAAAAGAAGTA
1 AAAGAATTGTGAACAAAGGAAAAGAAGTA
67526702 A
1 A
67526703 CAAAAGTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.59, C:0.03, G:0.24, T:0.14
Consensus pattern (29 bp):
AAAGAATTGTGAACAAAGGAAAAGAAGTA
Found at i:67530597 original size:17 final size:17
Alignment explanation
Indices: 67530541--67530600 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
67530531 TTCCTCAAAT
* *
67530541 TTTAGTAAAATTAATAAA
1 TTTAATAAAATT-TTAAA
* *
67530559 TTTTAATTAAAATATT-AC
1 -TTTAA-TAAAATTTTAAA
67530577 TTTAATAAAATTTTAAA
1 TTTAATAAAATTTTAAA
67530594 TTTAATA
1 TTTAATA
67530601 TAAAAATACA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
16 8 0.24
17 13 0.39
18 1 0.03
19 5 0.15
20 6 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TTTAATAAAATTTTAAA
Found at i:67530828 original size:12 final size:13
Alignment explanation
Indices: 67530807--67530835 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
67530797 TTATAACATC
67530807 AAAAATTAAAAAT
1 AAAAATTAAAAAT
67530820 AAAAA-TAAAAAT
1 AAAAATTAAAAAT
67530832 AAAA
1 AAAA
67530836 GAATCGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAATTAAAAAT
Found at i:67533172 original size:21 final size:21
Alignment explanation
Indices: 67533143--67533182 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67533133 ATAAATAGCC
67533143 TATAAAAA-TATTAATAAATAT
1 TATAAAAATTA-TAATAAATAT
*
67533164 TATATAAATTATAATAAAT
1 TATAAAAATTATAATAAAT
67533183 TAAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TATAAAAATTATAATAAATAT
Found at i:67533237 original size:14 final size:14
Alignment explanation
Indices: 67533218--67533244 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67533208 ATATTTGCAC
67533218 TATTTTAATATTAT
1 TATTTTAATATTAT
67533232 TATTTTAATATTA
1 TATTTTAATATTA
67533245 AAAAATTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTTTAATATTAT
Found at i:67535215 original size:33 final size:34
Alignment explanation
Indices: 67535178--67535261 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 34
67535168 TTGATTTATG
* *
67535178 ATAAGCATATTAATTGCAATTGTA-TGACCGGTT
1 ATAAGCATATTAATTGCAATCGTATTGACCGATT
* * * * *
67535211 ATAAGCATATTAAGTACTATCGTATTGATCTATT
1 ATAAGCATATTAATTGCAATCGTATTGACCGATT
67535245 ATAAGCATATTAATTGC
1 ATAAGCATATTAATTGC
67535262 TACCAATTGA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
33 20 0.49
34 21 0.51
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (34 bp):
ATAAGCATATTAATTGCAATCGTATTGACCGATT
Found at i:67535276 original size:33 final size:34
Alignment explanation
Indices: 67535209--67535283 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
67535199 GTATGACCGG
**
67535209 TTATAAGCATATTAAGTACTATCGTATTGATCTA
1 TTATAAGCATATTAAGTACTATCCAATTGATCTA
* *
67535243 TTATAAGCATATTAATTGCTA-CCAATTGATCTA
1 TTATAAGCATATTAAGTACTATCCAATTGATCTA
67535276 TTATAAGC
1 TTATAAGC
67535284 CCATTAAATG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 18 0.49
34 19 0.51
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (34 bp):
TTATAAGCATATTAAGTACTATCCAATTGATCTA
Found at i:67535290 original size:33 final size:34
Alignment explanation
Indices: 67535234--67535309 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 34
67535224 GTACTATCGT
* *
67535234 ATTGATCTATTATAAGCATATTAATTGCTACCA-
1 ATTGATCTATTATAAGCACATTAAATGCTACCAC
* * *
67535267 ATTGATCTATTATAAGCCCATTAAATGTTATCAC
1 ATTGATCTATTATAAGCACATTAAATGCTACCAC
67535301 ATTGATCTA
1 ATTGATCTA
67535310 AGCATGCCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (34 bp):
ATTGATCTATTATAAGCACATTAAATGCTACCAC
Found at i:67535448 original size:45 final size:44
Alignment explanation
Indices: 67535399--67535550 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 44
67535389 ACCCATAGCC
**
67535399 AGAGGCAGATTCTATCTGTGAGATATTTGTTGTCCATCCACAGTT
1 AGAGGCAGATTCTATCTGTGAGAT-TTTGTTGTGTATCCACAGTT
* * * * *
67535444 AGAGGCAAATTCTAACTGT-AGGATTTTGTTGTGTTTTCACATCTT
1 AGAGGCAGATTCTATCTGTGA-GATTTTGTTGTGTATCCACA-GTT
* ** *
67535489 A-AGGCAGATTGTATCTACGAGATTTTTGTTGTGTATCCACAGCT
1 AGAGGCAGATTCTATCTGTGAGA-TTTTGTTGTGTATCCACAGTT
* *
67535533 AGAGGTAGATTCCATCTG
1 AGAGGCAGATTCTATCTG
67535551 CAGGATTTTG
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
44 30 0.37
45 52 0.63
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (44 bp):
AGAGGCAGATTCTATCTGTGAGATTTTGTTGTGTATCCACAGTT
Found at i:67535574 original size:89 final size:89
Alignment explanation
Indices: 67535401--67535575 Score: 206
Period size: 89 Copynumber: 2.0 Consensus size: 89
67535391 CCATAGCCAG
** * * *
67535401 AGGCAGATTCTATCTGTGAGATATTTGTTGTCCATCCACAGTTAGAGGCAAATTCTAACTGTAGG
1 AGGCAGATTCTATCTACGAGATATTTGTTGTCCATCCACAGCTAGAGGCAAATTCCAACTGCAGG
* * * *
67535466 ATTTTGTTGTGTTTTCACATCTTA
66 ATTTTGCTATGTGTCCACATCTTA
* * ** * * *
67535490 AGGCAGATTGTATCTACGAGATTTTTGTTGTGTATCCACAGCTAGAGGTAGATTCCATCTGCAGG
1 AGGCAGATTCTATCTACGAGATATTTGTTGTCCATCCACAGCTAGAGGCAAATTCCAACTGCAGG
67535555 ATTTTGCTATGTGTCCACATC
66 ATTTTGCTATGTGTCCACATC
67535576 CATTGGTAGT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
89 70 1.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (89 bp):
AGGCAGATTCTATCTACGAGATATTTGTTGTCCATCCACAGCTAGAGGCAAATTCCAACTGCAGG
ATTTTGCTATGTGTCCACATCTTA
Found at i:67538044 original size:29 final size:29
Alignment explanation
Indices: 67537981--67538048 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
67537971 TAATCAACCG
*
67537981 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
67538010 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
67538039 CGCACACTTA
1 CGCACACTTA
67538049 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:67538218 original size:29 final size:29
Alignment explanation
Indices: 67538155--67538222 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
67538145 TAATCAACCG
67538155 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
67538184 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
67538213 CGCACACTTA
1 CGCACACTTA
67538223 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:67538363 original size:29 final size:30
Alignment explanation
Indices: 67538330--67538402 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
67538320 AATCAACCGT
*
67538330 GCACACTTAGTGCCATGTAC-TTTAAACTC
1 GCACACTTAGTGCCATGTACATTTAAACCC
67538359 GCACACTTAGTG-C-TGTACAATTTAAACCC
1 GCACACTTAGTGCCATGTAC-ATTTAAACCC
67538388 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
67538403 ATCTCATGAC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 32 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (30 bp):
GCACACTTAGTGCCATGTACATTTAAACCC
Found at i:67538396 original size:174 final size:174
Alignment explanation
Indices: 67537870--67538371 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
67537860 AACTCAAGGT
* *
67537870 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
67537935 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
67538000 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
67538044 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
67538109 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
67538174 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
67538218 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
67538283 GAAAATATATATTGGGTTCGCACACATCGTGCTTAACAATCAACCGTGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
67538348 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
67538372 TGTACAATTT
Statistics
Matches: 317, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 317 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:67542680 original size:37 final size:37
Alignment explanation
Indices: 67542630--67542708 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67542620 TTATTACGAA
* * *
67542630 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
67542667 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
67542704 GTCTT
1 GTCTT
67542709 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:67542904 original size:47 final size:47
Alignment explanation
Indices: 67542826--67543549 Score: 1083
Period size: 47 Copynumber: 15.2 Consensus size: 47
67542816 CTCTTCGGGA
* * * * * **
67542826 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67542873 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
67542920 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67542967 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67543016 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67543063 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67543112 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
67543159 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
67543208 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
67543255 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-AGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
67543303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
67543349 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
67543398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67543445 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
67543493 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
67543541 CTTATCACA
1 CTTATCACA
67543550 ATTTAGAATT
Statistics
Matches: 627, Mismatches: 38, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
46 46 0.07
47 267 0.43
48 140 0.22
49 174 0.28
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:67543021 original size:96 final size:96
Alignment explanation
Indices: 67542826--67543549 Score: 1172
Period size: 96 Copynumber: 7.6 Consensus size: 96
67542816 CTCTTCGGGA
** * * * * ** * *
67542826 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
67542889 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67542920 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
67542985 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67543016 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
67543081 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67543112 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
67543177 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67543208 CTTATCACAGATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
67543273 ACTTTCACATTCATCACATCGGCCATTA-GC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67543303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
67543367 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67543398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC--ATATATA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACATATATATA
67543461 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67543493 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTA-TCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA
67543550 ATTTAGAATT
Statistics
Matches: 600, Mismatches: 23, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
94 93 0.16
95 135 0.22
96 368 0.61
97 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67543042 original size:143 final size:144
Alignment explanation
Indices: 67542826--67543549 Score: 1110
Period size: 143 Copynumber: 5.1 Consensus size: 144
67542816 CTCTTCGGGA
* * * * * * *
67542826 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
**
67542889 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC-GCATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACAATATATACACTTTCACATTCATCAC
*
67542953 ATCGGCCATTAAGC
131 ATCGGCCATTAGGC
* * *
67542967 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67543032 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA-ATATATACACTTTCACATTCATCA
*
67543097 CATCGGCTATTAGGC
130 CATCGGCCATTAGGC
* * *
67543112 CTTATCGC--ACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
67543175 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-AGATATACACTTTCACATTCATC
64 ACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACAATATATACACTTTCACATTCATC
*
67543239 ACATCGGCCATTAAGC
129 ACATCGGCCATTAGGC
67543255 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67543319 ACTTTCACATTCATCACATCGGCCATT-AGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA-ATATATACACTTTCACATTCATCA
67543383 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
*
67543398 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACATATATA
* *
67543461 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC-ATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACAATATATACACTTTCACATTCATC
67543525 ACATCGGCCATTAGGC
129 ACATCGGCCATTAGGC
67543541 CTTATCACA
1 CTTATCACA
67543550 ATTTAGAATT
Statistics
Matches: 536, Mismatches: 32, Indels: 27
0.90 0.05 0.05
Matches are distributed among these distances:
141 56 0.10
142 41 0.08
143 298 0.56
144 15 0.03
145 126 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (144 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:67547174 original size:40 final size:40
Alignment explanation
Indices: 67547127--67547351 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
67547117 CTTCGAGACC
* * ** * *
67547127 TAGCCCGGATATAACCACAAGCTCAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
* * * *
67547167 TAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
* * *
67547207 TAGCCCGGATGTATCAACTTGCACAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
*
67547247 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
*
67547287 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
* *
67547327 TATCCCGGATATATCAATTCGCACA
1 TAGCCCGGATATATCAACTCGCACA
67547352 CATAGTGCTT
Statistics
Matches: 164, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCT
Found at i:67547408 original size:29 final size:29
Alignment explanation
Indices: 67547369--67547447 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
67547359 CTTAATAATC
*
67547369 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
67547399 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
67547428 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67547448 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:67547490 original size:43 final size:43
Alignment explanation
Indices: 67547429--67547703 Score: 505
Period size: 43 Copynumber: 6.4 Consensus size: 43
67547419 TGCATTTCAA
* *
67547429 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
67547472 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
67547515 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
*
67547558 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
*
67547601 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
*
67547644 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
67547687 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
67547704 TGAAAACCAA
Statistics
Matches: 225, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 225 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
Found at i:67549640 original size:36 final size:37
Alignment explanation
Indices: 67549568--67549645 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
67549558 TTATTACGAA
* *
67549568 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
67549605 GTCTTACCCGGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
67549641 GTCTT
1 GTCTT
67549646 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 24 0.63
37 14 0.37
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:67549841 original size:47 final size:47
Alignment explanation
Indices: 67549763--67550344 Score: 876
Period size: 47 Copynumber: 12.2 Consensus size: 47
67549753 CCCTTCGGGA
* * * * * *
67549763 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67549810 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
67549857 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67549904 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67549953 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67550000 CTTATCACATATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67550049 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67550096 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67550145 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67550192 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67550241 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67550288 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67550336 CTTATCACA
1 CTTATCACA
67550345 ATTTAGAATT
Statistics
Matches: 488, Mismatches: 38, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
47 267 0.55
48 46 0.09
49 175 0.36
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67549958 original size:96 final size:96
Alignment explanation
Indices: 67549763--67550344 Score: 938
Period size: 96 Copynumber: 6.1 Consensus size: 96
67549753 CCCTTCGGGA
** * * * * ** * *
67549763 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
67549826 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67549857 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
67549922 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67549953 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
* *
67550018 ACTTTCACATTCATCACATCAGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67550049 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
67550114 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67550145 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
67550210 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67550241 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC--ATATATA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACATATATATA
67550304 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
67550336 CTTATCACA
1 CTTATCACA
67550345 ATTTAGAATT
Statistics
Matches: 463, Mismatches: 22, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
94 44 0.10
95 48 0.10
96 367 0.79
97 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67554194 original size:29 final size:28
Alignment explanation
Indices: 67554158--67554235 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67554148 TCATGAGATT
67554158 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67554188 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67554215 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
67554236 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67554453 original size:174 final size:174
Alignment explanation
Indices: 67554188--67554515 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
67554178 AAATTGTACA
*
67554188 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGCGTGCGCGGTTGATTATTAAGCACTATG
* *
67554253 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
67554318 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
67554362 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGCGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGCGTGCGCGGTTGATTATTAAGCACTATG
*
67554427 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
67554492 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
67554516 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGCGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:67567456 original size:47 final size:47
Alignment explanation
Indices: 67567373--67567951 Score: 932
Period size: 47 Copynumber: 12.4 Consensus size: 47
67567363 CAGCCAAGAC
67567373 AGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67567419 AGTGTATATGTGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67567466 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67567513 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67567560 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67567607 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67567654 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
67567701 AGTGTATATGTGTGATAAGG-CTAATAGCAGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67567747 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67567794 AGTGTATATATGTAATAAGGCCT-ATGGCCGATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67567839 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * ** *
67567886 AGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67567933 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67567952 TCCCGAAGGT
Statistics
Matches: 499, Mismatches: 30, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
45 23 0.05
46 102 0.20
47 374 0.75
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:67567757 original size:23 final size:23
Alignment explanation
Indices: 67567685--67567758 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
67567675 CTAATGGCCG
67567685 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* * * *
67567708 ATGTG-TGATAAG-GCTAA-TAGCAG
1 ATGTGATGA-ATGTG-AAAGT-GTAT
67567731 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
67567754 ATGTG
1 ATGTG
67567759 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
22 5 0.14
23 27 0.73
24 5 0.14
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.32
Consensus pattern (23 bp):
ATGTGATGAATGTGAAAGTGTAT
Found at i:67568126 original size:37 final size:37
Alignment explanation
Indices: 67568074--67568148 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
67568064 GCTCTAAAGG
* * *
67568074 CCCGATGACTACGTGTGG-GAATTTTGTCTGGGTAAGA
1 CCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAAGA
*
67568111 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
67568148 C
1 C
67568149 TTCGTAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:67570090 original size:29 final size:29
Alignment explanation
Indices: 67570055--67570128 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67570045 GTTGTGAGAT
* *
67570055 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67570084 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67570113 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67570129 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67570580 original size:40 final size:41
Alignment explanation
Indices: 67570443--67570621 Score: 174
Period size: 40 Copynumber: 4.5 Consensus size: 41
67570433 TCGAATGATG
* *
67570443 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTATA
* * * * *
67570483 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCTAAGTGACTATA
*
67570523 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCT-AGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAAGTGACTATA
*
67570563 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCT-AGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAAGTGACTATA
* **
67570603 TCCGTGCTAAACCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
67570622 AGCAATCATG
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 99 0.82
41 19 0.16
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTATA
Found at i:67572490 original size:14 final size:13
Alignment explanation
Indices: 67572470--67572501 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
67572460 CGAATTTTTT
67572470 AAAAAAAATAAAA
1 AAAAAAAATAAAA
67572483 ATAAAAAAATAAAA
1 A-AAAAAAATAAAA
67572497 AAAAA
1 AAAAA
67572502 TGTGATAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (13 bp):
AAAAAAAATAAAA
Found at i:67574389 original size:47 final size:47
Alignment explanation
Indices: 67574328--67574910 Score: 977
Period size: 47 Copynumber: 12.4 Consensus size: 47
67574318 CAACCAAAAC
67574328 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67574375 AGTGTATATGTGTGATAAGGCCTACTGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67574422 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67574469 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67574516 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67574563 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67574610 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67574657 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
67574704 AGTGTATATGTGTGGTAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67574751 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67574798 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
67574845 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67574892 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67574911 TCCCGAAGGG
Statistics
Matches: 507, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 507 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:67575086 original size:37 final size:37
Alignment explanation
Indices: 67575034--67575108 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
67575024 GCTCTAAAGG
* *
67575034 CCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAG-ATTATGTCCGGGTAAGA
*
67575071 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
67575108 C
1 C
67575109 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 33 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:67576554 original size:43 final size:43
Alignment explanation
Indices: 67576493--67576592 Score: 200
Period size: 43 Copynumber: 2.3 Consensus size: 43
67576483 GATCCAAGAT
67576493 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
67576536 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
67576579 GATTTGGCATCTCT
1 GATTTGGCATCTCT
67576593 ACATTTGATG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
Found at i:67576930 original size:220 final size:220
Alignment explanation
Indices: 67576536--67583053 Score: 9127
Period size: 220 Copynumber: 29.7 Consensus size: 220
67576526 CAAAGAAACA
* * * *
67576536 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCTACATTTGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67576601 TGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * * **
67576666 AATGATTTGGCATTAC-TGTGTTTACAAGAAACAAATCAAAGACATAGCAGATCTGACCTTTATT
131 GATGATTTGGCATT-CTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG
* ***
67576730 TGTTTACTCTGAATTTGATCCAAGAT
195 TGTTTACACTGAAGCAGATCCAAGAT
* * * *
67576756 GATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAACCAGATTTGTCATCCCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * * *
67576821 CGGAGAGCAGATCGAAGATATACCAGATCTAACCTTTGGATGTTTTCACATCGAAGAAGATTCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * *
67576886 GATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATTGAAGACATAACAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* *
67576951 GTTTACACTAAAGTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * *
67576976 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTTCATATTCAA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * **
67577041 TGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATTTTTTCACATCGAAGCAGATATAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * *
67577106 GATGATTTGGCATTCTTGTGTTTACAAAGAGCAAAACGAAGACATAGCAGATTTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
**
67577171 GTTTACACTGAAGC-GAATTTAAGAT
196 GTTTACACTGAAGCAG-ATCCAAGAT
* * ** * *
67577196 GATTTGGCATCTCCGTATTGTCAGAGAGCGGATTGAAGAAACAGATTTGGCATCTCCATATTTGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* *
67577261 C-G-GAG-AG--C--AG--AT------T-TGACCTTTGGATGTTTTCACATCAAAGCAGGTCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* *
67577310 GATGATTTGACATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
67577375 GTTTACACTGAAGCAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * *
67577400 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCAAAGAAACAGATTTGGCATCTCTATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * *
67577465 CGGAGAGTAGATTGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * * * *
67577530 GATGATTTGGAATTCTTGTGTTTACAATGAGTACATCAAAGAAATAGTAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
67577595 GTTTACACTGAAGCAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* *
67577620 GATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAAAAACAGATTTGGCATCTCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* *
67577685 CGAAGAGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * *
67577750 GATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* *
67577815 GTTTACACTGAAGTAGATCCAACAT
196 GTTTACACTGAAGCAGATCCAAGAT
67577840 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * *
67577905 CGGAGATCAGATCGAAGATATAGCAGATCTGACCTTTGGATGTTTTTACATCGAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* *
67577970 GATGATTTGGCATTCTTGTGTTTACAAGGGGCAAATCGAAAACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* ** *
67578035 GTTTACTCTGAAGTGGATCTAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
**** * * *
67578060 GATTTGGCATCTCTGTATTGTCAGAGAGTGGATTGAAGAAACATATTTGGCATCTCCATATTTGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* *
67578125 CGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * *
67578190 GATGATTTGCCATTCTTGTGTTTACAAGGAGCAAATCGAAGATATAGCAGATCTGGCCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* *
67578255 GTTTACACTAAAGTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * * **
67578280 GATTTGGCCTCTCTGTATTGTCAGAGAACAAATCAAAGAAATAGATTTGGCATCTTTATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * * ***
67578345 CGGAGAGCAGATCGAAGATATAGCAGATCTAACCTTTGGTTGTTTTCACATCAAAGCAGAAATAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * *
67578410 TATTATTTGGCATTCTTGTGTTTACCAGGGGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
*
67578475 GTTTACACTGAAGCAGAGCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* **** *
67578500 GATTTGGCATCCCTGTATTGTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTC-
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATA-TTCG
* * * *
67578564 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCACATTGAAGCAGATGCA
65 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCA
* * * * * *
67578629 AAATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCAAAGACATAGTAGATTTGACCTGCAGG
130 AGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG
67578694 TGTTTACACTGAAGCAGATCCAAGAT
195 TGTTTACACTGAAGCAGATCCAAGAT
** * *
67578720 GATTTGGTGTCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTTGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67578785 CGCAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCTAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* *
67578850 GATGATTTGGCATTCTTCTGTTTACAAGGAGCAAATCGAAGATATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
*
67578915 GTTTACACTGAAGTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
** * * * *
67578940 GATTTTCCATCTCTGTATTGTTAGAGAACAAATCGAAGAAATAGATTTGGAATCTCCATATTCAA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * * * *
67579005 TGGAGAGAAGTTCGAAGAAATAGCAGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * **
67579070 AATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGTAGATCTGACCTTTATTT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* ***
67579135 GTTTACTCTGAATTTGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * * *
67579160 GATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAACCAGATTTGTCATCCCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * * *
67579225 CAGAGAGCAGATCGAAGATATACCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCTAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
67579290 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
*
67579355 GTTTACACTGAAGTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * * *
67579380 GAGTTGCCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCAATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67579445 TGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCAAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * * *
67579510 AATGATTTGGCATTATTGTGTTTACAA-GATGCAAATCGAAGGCATAGCAGATCTGACTTTTAGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGA-GCAAATCGAAGACATAGCAGATCTGACCTTCAGG
*
67579574 TGTTTACTA-TGAAGTAGATCCAAGAT
195 TGTTTAC-ACTGAAGCAGATCCAAGAT
* * * *
67579600 GATTTGGCATCTCTGTATTTTCAGAAAACAAATCGAAAAAACAGATTTGTCATC-CACATATTCG
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTC-CATATTCG
* * * *
67579664 ACGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCATATTCA
65 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCA
* * * * *
67579729 AGATGATTTGGCATTCTTGTGTTTACAATGAGCAAATTGAAGACATCGTAGATCTGACCTTTAGG
130 AGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG
*
67579794 TGTTTACACTAAAGCAGATCCAAGAT
195 TGTTTACACTGAAGCAGATCCAAGAT
* * *
67579820 GATTTGGCATCTCTGTATTGTCCGAGAACAAATCGAAGAAATAGATTTGACATCTCCAT-TTC-A
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67579883 AGGTAGAGTAGATCGAAGACATAGTAGATCTAACCTTTGGATGCTTTT-ACATCGAAGCAGATCC
66 CGG-AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG-TTTTCACATCGAAGCAGATCC
* * ** *
67579947 AAGATGATCTGGCATTCTTGTGTTTACAAGGAGCAAATCGTAGACATAATAGATCTGACATTCAG
129 AAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAG
*
67580012 GTGTTTACACTGAAGCGGATCCAAGAT
194 GTGTTTACACTGAAGCAGATCCAAGAT
* * * *
67580039 GATTTGGCATCTCTGTATTGTCAGAGAACAGATTGAAGAAACTGATTTGGCATCTCTATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* *
67580104 CGGAGAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * *
67580169 GATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCAGATCTGGCCTTCAAGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
*
67580234 GTTTACACTGAAGTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * *
67580259 GAATTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * *
67580324 CGGATAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
*
67580389 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* *
67580454 GTTTACACTAAAGCAGATCCAAGAA
196 GTTTACACTGAAGCAGATCCAAGAT
* *
67580479 GATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCAT-TTC-A
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * * * * *
67580542 AGTTAGAGCAGATTGAAGACATAGTAGATCTAACCTTTGGATGTTTTTACATCGAAGAAGATCCA
66 CG-GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCA
* * * *
67580607 AGATGA-TTGGACAGTCTTGTGTTTACAAGGAGCAAATCGTAGACATAACAGATCTGACATTCAG
130 AGATGATTTGG-CATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAG
*
67580671 GTGTTTACACTGAAGCGGATCCAAGAT
194 GTGTTTACACTGAAGCAGATCCAAGAT
* * * *
67580698 GATTTGGCATCTCTGTATTGTCAGAGAACAGATTGAAGAAACTGATTTGGCATCTCTATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * *
67580763 CGGAGAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGGTCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * *
67580828 GATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGTAGATCTGGCCTTCAAGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
**
67580893 GTTTACACTGAATTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * *
67580918 GAATTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCCCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67580983 CGGATAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * *
67581048 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGATATAGCAGATCTGACCTTTAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
67581113 GTTTACACTGAAGCAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* *
67581138 GATTTGGCAT-TACTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGTATCTGCATATTCG
1 GATTTGGCATCT-CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCG
* * * * * * * *
67581202 ATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCA
65 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCA
* * * * * * *
67581267 AAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATTGCTGATCTGACCTTTAGT
130 AGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG
* *
67581332 TGTTTACTCTGAAGTAGATCCAAGAT
195 TGTTTACACTGAAGCAGATCCAAGAT
* * * * *
67581358 GATTTGGCATCTCTGTATTATCAGAAAACAAATCGAAGAAACAGATTTGTCATCCCCACATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67581423 CGGAGAGCAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* *
67581488 GATGAATTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
*
67581553 GTTTACACTAAAGCAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* **
67581578 GATTTGGCATCTCTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTCACATCTCCATATTC-A
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67581642 TGGGAGAGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAACAGATCCA
66 -CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCA
* * * *
67581707 AGATGATTTGGAATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTAACCTTCAGG
130 AGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG
* * *
67581772 TCTTTACCCTGAAGCAAATCCAAGAT
195 TGTTTACACTGAAGCAGATCCAAGAT
*
67581798 GATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* *
67581863 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCGAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * * *
67581928 GATGATCTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTGCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* * *
67581993 GTTTACACAGAAGCATATGCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
*
67582018 GATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
** *
67582083 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTTGATCGAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * *
67582148 GATGATTTAGAATTCTTGTCTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
*
67582213 GTTTACACTAAAGCAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* ** *
67582238 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAACAAACAGATTTCACATCTCCATATTCAA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67582303 GGGAGAGCAGATAGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * *
67582368 GATGATTTCGCATTCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATCTGACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* *
67582433 GTTTACACTGAAGCAAATCCAATAT
196 GTTTACACTGAAGCAGATCCAAGAT
*
67582458 GATTTGGCATCTCTGTATTGTCAGAGGACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* *
67582523 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTACATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * ** * * * *
67582588 GATGATTTAGAATTCTTGTGTTTACAATTAGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
67582653 GTTTACACTGAAGCAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * * *
67582678 GATTTGGCATCACTGTATTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTGCATATTCGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * * * * * *
67582743 TGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
* * * * * * * *
67582808 AATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATTGCTGATATGACCTTTAGTT
131 GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
* *
67582873 GTTTACTCTGAAGTAGATCCAAGAT
196 GTTTACACTGAAGCAGATCCAAGAT
* * * * *
67582898 GATTTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGTCATCCCCACATTTGA
1 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
* * * *
67582963 CGGAGAGCAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAA
66 CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
*
67583028 GATGAATTGGCATTCTTGTGTTTACA
131 GATGATTTGGCATTCTTGTGTTTACA
67583054 CTGAAGCAGA
Statistics
Matches: 5568, Mismatches: 689, Indels: 82
0.88 0.11 0.01
Matches are distributed among these distances:
204 171 0.03
205 3 0.00
206 3 0.00
207 2 0.00
211 4 0.00
213 4 0.00
215 1 0.00
217 2 0.00
218 12 0.00
219 392 0.07
220 4956 0.89
221 18 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (220 bp):
GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA
CGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAA
GATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGT
GTTTACACTGAAGCAGATCCAAGAT
Found at i:67580511 original size:87 final size:88
Alignment explanation
Indices: 67580334--67580517 Score: 218
Period size: 87 Copynumber: 2.1 Consensus size: 88
67580324 CGGATAGCAG
* * *
67580334 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATG-TTTTACATCAAAGCAGATCCAAGAAGATTTGA
* *
67580399 CATTCTTGTGTTTACAAGGAGCAA
65 CATTCTTGTATTTACAAGGAACAA
*
67580423 ATTGAAGACATAGCAGATCTGACCTTCAGG-TG-TTTACA-CTAAAGCAGATCCAAGAAGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTACATC-AAAGCAGATCCAAGAAGATTTG
67580485 ACA-TCTCTGTATTGT-C-AGAGAACAA
64 ACATTCT-TGTATT-TACAAG-GAACAA
67580510 ATCGAAGA
1 ATCGAAGA
67580518 AACAGATTTG
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
86 6 0.07
87 47 0.57
88 1 0.01
89 27 0.33
90 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (88 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTACATCAAAGCAGATCCAAGAAGATTTGAC
ATTCTTGTATTTACAAGGAACAA
Found at i:67581170 original size:87 final size:88
Alignment explanation
Indices: 67580993--67581176 Score: 227
Period size: 87 Copynumber: 2.1 Consensus size: 88
67580983 CGGATAGTAG
67580993 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTTACATCAAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGGATG-TTTTACATCAAAGCAGATCCAAGATGATTTGG
* *
67581058 CATTCTTGTGTTTACAAGGAGCAA
65 CATTCTTGTATTTACAAGGAACAA
* * *
67581082 ATTGAAGATATAGCAGATCTGACCTTTAGG-TG-TTTACA-CTGAAGCAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTT-GGATGTTTTACATC-AAAGCAGATCCAAGATGATTTG
67581144 GCATTAC-TGTATTGT-C-AGAGAACAA
64 GCATT-CTTGTATT-TACAAG-GAACAA
67581169 ATCGAAGA
1 ATCGAAGA
67581177 AACAGATTTG
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
86 3 0.04
87 50 0.60
88 2 0.02
89 27 0.32
90 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (88 bp):
ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTACATCAAAGCAGATCCAAGATGATTTGGC
ATTCTTGTATTTACAAGGAACAA
Found at i:67581616 original size:87 final size:89
Alignment explanation
Indices: 67581430--67581596 Score: 198
Period size: 89 Copynumber: 1.9 Consensus size: 89
67581420 CGACGGAGAG
* * * * *
67581430 CAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGAAT
1 CAAATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACATCAAAGCAGATCCAAGATGAAT
* *
67581495 TGGCATTCTTGTGTTTACAAGGAG
66 TGGCATTCTTGTATTTACAAGGAA
* * *
67581519 CAAATTGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-AAAGCAGATCCAAGATGAT
1 CAAATCGAAGACATAGCAGATCTAACCTT-AGGATGTTTACACATCAAAGCAGATCCAAGATGAA
67581581 TTGGCA-TCTCTGTATT
65 TTGGCATTCT-TGTATT
67581597 GTCAGAGAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
86 3 0.04
87 27 0.40
88 1 0.01
89 34 0.51
90 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (89 bp):
CAAATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACATCAAAGCAGATCCAAGATGAAT
TGGCATTCTTGTATTTACAAGGAA
Found at i:67583082 original size:174 final size:174
Alignment explanation
Indices: 67582872--67583227 Score: 489
Period size: 174 Copynumber: 2.0 Consensus size: 174
67582862 GACCTTTAGT
* * *
67582872 TGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGA
1 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAAAACAAATCGAAGA
* ** * *
67582937 AACAGATTTGTCATCCCCACATTTGACGGAGAGCAA-ATCGATGACATAGCAGATCTAACCTTTG
66 AACAGATTTGGCATCCCCACATTCAACGGAGAG-AAGATCGAAGACATAGCAGATCTAACCATTG
* * * * * *
67583001 GATGTTTTCACATCGAAGCAGATTCAAGATGAATTGGCATTCTTG
130 GACGATTTCACATCGAAGCAGATCCAAAATGAATTGGAATTATTG
*
67583046 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAGA
1 TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAAAACAAATCGAAGA
* ** * * *
67583111 AATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTGG
66 AACAGATTTGGCATCCCCACATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTAACCATTGG
* *
67583176 ACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTG
131 ACGATTTCACATCGAAGCAGATCCAAAATGAATTGGAATTATTG
67583220 TGTTTACA
1 TGTTTACA
67583228 AGAAGCAAAT
Statistics
Matches: 158, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
173 2 0.01
174 156 0.99
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (174 bp):
TGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAAAACAAATCGAAGA
AACAGATTTGGCATCCCCACATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTAACCATTGG
ACGATTTCACATCGAAGCAGATCCAAAATGAATTGGAATTATTG
Found at i:67583160 original size:394 final size:394
Alignment explanation
Indices: 67582651--67583447 Score: 1344
Period size: 394 Copynumber: 2.0 Consensus size: 394
67582641 TAACCTTCAG
67582651 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAG
*
67582716 AAATAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTG
66 AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTG
* *
67582781 GATGATTTAACATCAAAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GACGATTTAACATCAAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
* * * *
67582846 AAGACATTGCTGATATGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTC
196 AAGACATAGCAGATATGACCATTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCAC
*
67582911 TGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGT-CATCCCCACATTTGACGGAGAGCAAAT
261 TGTATTGTCAGAAAACAAATCGAAGAAACAGATTT-TCCATCCCCACATTCGACGGAGAGCAAAT
* * **
67582975 CGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGAATTGGCA
325 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGAAACAAGATGAATTGGCA
67583040 TTCTT
390 TTCTT
*
67583045 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAG
*
67583110 AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTG
* *
67583175 GACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
131 GACGATTTAACATCAAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
*
67583240 AAGACATAGCAGATCTGACCATTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCAC
196 AAGACATAGCAGATATGACCATTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCAC
* * *
67583305 TGTATTGTCAGAGAACAAATCGAAGAAACAGATTTTCCATCCCCATATTCGACGGAGAGCAGATC
261 TGTATTGTCAGAAAACAAATCGAAGAAACAGATTTTCCATCCCCACATTCGACGGAGAGCAAATC
* * * * * *
67583370 GAAGACATAGTAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGAAAGAAGATTATTTGGCAT
326 GAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGAAACAAGATGAATTGGCAT
67583435 TCTT
391 TCTT
67583439 GTGTTTACA
1 GTGTTTACA
67583448 AGGAGCAAAT
Statistics
Matches: 376, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
393 1 0.00
394 375 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (394 bp):
GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAG
AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTG
GACGATTTAACATCAAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
AAGACATAGCAGATATGACCATTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCAC
TGTATTGTCAGAAAACAAATCGAAGAAACAGATTTTCCATCCCCACATTCGACGGAGAGCAAATC
GAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGAAACAAGATGAATTGGCAT
TCTT
Found at i:67583324 original size:87 final size:89
Alignment explanation
Indices: 67583147--67583330 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 89
67583137 TGGAGAGAAG
*
67583147 ATCGAAGACATAGCAGATCTGACCATTGGACGATTTCACATCGAAGTAGATCCAAAATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGTAGATCCAAAATGATTTGG
* * *
67583212 AATTATTGTGTTTACAAGAAGCAA
66 AATCACTGTATTTACAAGAAGCAA
** *
67583236 ATCGAAGACATAGCAGATCTGACCATTAGTTG-TTT-AC-TCTGAAGTAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATC-GAAGTAGATCCAAAATGATTTG
*
67583298 GCATCACTGTATTGT-CAGAGAA-CAA
65 GAATCACTGTATT-TACA-AGAAGCAA
67583323 ATCGAAGA
1 ATCGAAGA
67583331 AACAGATTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
86 2 0.02
87 45 0.54
88 8 0.10
89 29 0.35
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGTAGATCCAAAATGATTTGG
AATCACTGTATTTACAAGAAGCAA
Found at i:67583387 original size:614 final size:613
Alignment explanation
Indices: 67582431--67583666 Score: 1799
Period size: 614 Copynumber: 2.0 Consensus size: 613
67582421 TGACCTTCAG
* * *
67582431 GTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTGTCAGAGGACAAATCGAAG
1 GTGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
* * *
67582496 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
* * * * ** * *
67582561 GATGTTTTCACATCGAAGTACATCCAAGATGATTTAGAATTCTTGTGTTTACAATTAGTAAATTG
131 GACGATTTCACATCGAAGTACATCCAAAATGATTTAGAATTATTGTGTTTACAAGAAGCAAATCG
67582626 AAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCAC
196 AAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCAC
* * ** *
67582691 TGTATTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTGCATATTCGATGGAGAGAAGATC
261 TGTATTATCAGAGAACAAATCGAAGAAACAGATTTGCCATCCCCATATTCGACGGAGAGAAGATC
* **
67582756 GAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGTAGATCCAAAATGATTTGGCAT
326 GAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGCAGAAACAAAATGATTTGGCAT
** * * *
67582821 TATTGTGTTTACAAGAAGCAAATCGAAGACATTGCTGATATGACCTTTAGTTGTTTACTCTGAAG
391 TATTGTGTTTACAAGAAGCAAATCGAAGACATAACAGATATGACCTTTAGGTGTTTACACTGAAG
* * * *
67582886 TAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAAAACAAATCGAAGAAACAGATTTGTCAT
456 TAGAGCCAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAACAAATTTGGCAT
* *
67582951 CCCCACATTTGACGGAGAGCAAATCGATGACATAGCAGATCTAACCTTTGGATGTTTTCACATCG
521 CCCCACATTTGAAGGAGAGCAAATCGAAGACATAGCAGATCTAACC-TTGGATGTTTTCACATCG
* *
67583016 AAGCAGATTCAAGATGAATTGGCATTCTT
585 AAGCAGATCCAAGATGAATTGGCATTCGT
*
67583045 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
* * *
67583110 AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
* *
67583175 GACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
131 GACGATTTCACATCGAAGTACATCCAAAATGATTTAGAATTATTGTGTTTACAAGAAGCAAATCG
* * * * *
67583240 AAGACATAGCAGATCTGACCATT-AGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCA
196 AAGAAATAGCAGATCTAACC-TTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCA
* * *
67583304 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTTCCATCCCCATATTCGACGGAGAGCAGAT
260 CTGTATTATCAGAGAACAAATCGAAGAAACAGATTTGCCATCCCCATATTCGACGGAGAGAAGAT
* * * * * * * * *
67583369 CGAAGACATAGTAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGAAAGAAGATTATTTGGCA
325 CGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGCAGAAACAAAATGATTTGGCA
* * *
67583434 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAGATCTGACCTTTAGGTGTTTACACTGAA
390 TTATTGTGTTTACAAGAAGCAAATCGAAGACATAACAGATATGACCTTTAGGTGTTTACACTGAA
* * ** *
67583499 GTAGAGCCAAGATGATTTGGCATATCTGTATTGTCAGAGAGCGGATTGAAGAAACAAATTTGGCA
455 GTAGAGCCAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAACAAATTTGGCA
* * * *
67583564 TCTCCATATTTGAAGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTGGATGTTTTCACATCG
520 TCCCCACATTTGAAGGAGAGCAAATCGAAGACATAGCAGATCTAACCTTGGATGTTTTCACATCG
* *
67583629 AAGCAGATCCAAGATGATTTGGCATTGGT
585 AAGCAGATCCAAGATGAATTGGCATTCGT
67583658 GTGTTTACA
1 GTGTTTACA
67583667 AGCAGAAAAT
Statistics
Matches: 549, Mismatches: 72, Indels: 3
0.88 0.12 0.00
Matches are distributed among these distances:
613 52 0.09
614 495 0.90
615 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (613 bp):
GTGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
AAACAGATTTGGCATCTCCATATTCAACGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
GACGATTTCACATCGAAGTACATCCAAAATGATTTAGAATTATTGTGTTTACAAGAAGCAAATCG
AAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCAC
TGTATTATCAGAGAACAAATCGAAGAAACAGATTTGCCATCCCCATATTCGACGGAGAGAAGATC
GAAAACATAGCAGATCTGACCATTGGATGATTTAACATCAAAGCAGAAACAAAATGATTTGGCAT
TATTGTGTTTACAAGAAGCAAATCGAAGACATAACAGATATGACCTTTAGGTGTTTACACTGAAG
TAGAGCCAAGATGATTTGGCATATCTGTATTGTCAGAAAACAAATCGAAGAAACAAATTTGGCAT
CCCCACATTTGAAGGAGAGCAAATCGAAGACATAGCAGATCTAACCTTGGATGTTTTCACATCGA
AGCAGATCCAAGATGAATTGGCATTCGT
Found at i:67583443 original size:220 final size:220
Alignment explanation
Indices: 67583045--67593052 Score: 13708
Period size: 220 Copynumber: 45.6 Consensus size: 220
67583035 TGGCATTCTT
* *
67583045 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * *
67583110 AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * * *
67583175 GACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67583240 AAGACATAGCAGATCTGACCATT-AG
196 AAGACATAGCAGATCTGACC-TTCAG
* * *
67583265 TTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
** * *
67583330 AAACAGATTTTCCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * *** *
67583395 GTTGTTTTCACATCAAAGCAGAAAGAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67583460 AAGACATAACAGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * ** *
67583485 GTGTTTACACTGAAGTAGAGCCAAGATGATTTGGCATATCTGTATTGTCAGAGAGCGGATTGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67583550 AAACAAATTTGGCATCTCCATATTTGAAGGAGAGCAGATCGAAGACATAGCAGATCTGACC-TTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
** * *
67583614 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTGGTGTGTTTACAAGCAGAAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67583679 AAGACATAGTAGATTTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* *** *
67583704 GTGTTTACACTGAAGCAGATCCAAGATGATTTGATGTCTCTATATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67583769 AAACAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67583834 GACGATTTCACATCAAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67583899 AAGAAATAGCAGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67583924 TTATTTACTCTGAAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67583989 AAATAGATTTGTCATCCCCATATTCGACGGAGAGTAGATCGAAGAAATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * ** * *
67584054 GTTGTTTTCACATCAAAGCAGAAACAAGATTATTTGGTATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67584119 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * * ** *
67584144 GTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTTTCAGAGAGCGGATTGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67584209 AAACAAATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATGGTAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * *
67584274 GATGTTTTCACATCGAATCAAATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAGAAAATCA
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67584339 AAGACATAGTAGATTTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * **
67584364 GTGTTTACACTGAAGCAGACCCAAGATGATTTGGTGTCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67584429 AAACAGATTTGGCATCTCCATATTCAACGGAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
67584494 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67584559 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
*
67584584 GTTTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * * *
67584649 AAACATATTTGGCATCTCTATATTCGATGGAGGGAAGATCGAAGACATAG-ATTATTTGACCTTT
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA-GATCTGACCTTT
* *** * * * *
67584713 GCACAATTTCACATCGAAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67584778 GAAGACATAGCAGATCTGACCTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * *
67584804 TTGTTTACTCTAAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* *
67584869 AAACAGATTTGGCATC-CCGATATTCAACGGATAGCAGATCGAAGACATAGCAGATCTGACCTTT
66 AAACAGATTTGGCATCTCC-ATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT
* * ** *
67584933 GGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCCTTCTTGTGTTTACAAGGAGTGAATT
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67584998 GAAGACATAGCAGATCTGACCTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * *
67585024 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCCAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67585089 AAACAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACCTAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67585154 GACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCACTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67585219 AAGACATAGCAGAACTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67585244 TTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGCCAGAGAACAAATCAAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67585309 AAACAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * ** * *
67585374 GTTGTTTTTACATCAAAGCAGAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCGAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67585439 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * * ** *
67585464 GTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCTTCTCTGTATTGTTAGAGAGA-GGATTGAA
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGA-ACAAATCGAA
* * * * *
67585528 GAAAAAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCGAAGACGTAGCAGATCTAACCTTT
65 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT
* *
67585593 GGATGTTTTCACATCGAAGCATATCTAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
67585658 GAAGACATTA-CAGATCTGACCTTCAG
195 GAAGACA-TAGCAGATCTGACCTTCAG
** * *
67585684 GTGTTTACACAAAAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCAAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67585749 AAATAGATTTGGCATCTCCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67585814 GACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGTAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* * *
67585879 AAGGCATAGCAGATCTGACTTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * *
67585904 TTGTTTACTA-TGAAGTAGATCCAAGATGATTTGCCATCTCCGTATTGTCAGAGAACAAATCGAA
1 GTGTTTAC-ACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAA
* * * *
67585968 GAAATAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTT
65 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT
* * *
67586033 GGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATT
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67586098 GAAGACATAGCAGATCTGAACTTCAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * *
67586124 GTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
67586189 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA--T---C-TTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67586248 GATGTTTTCACATCGAAGTACATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATTG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67586313 AAGACATAGCAGATCTAACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* *
67586338 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67586403 AAACAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGTAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67586468 GACGATTTCACATCAAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* * *
67586533 AAGACATAGCAGATCCGTCCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * * * * *
67586558 TTATTTACTCTGAAGTGGATCCAAGATGATTTGCCATCTCTGTACTGTCAGAGAACAATTCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67586623 AAATAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * ** * * *
67586688 GTTGTTTTCACATCAAAGCAGAAACAAGATGAATTGGCATCCTTGTATTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67586753 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
*
67586778 GTTTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * * *
67586843 AAACATATTCGGCATCTCTATATTCGATGGAGAGAAGATCGAAGACATAG-ATTATTTGACCTTT
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA-GATCTGACCTTT
* *** * * * *
67586907 GCACAATTTCACATCGAAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67586972 GAAGACATAGCAGATCTGACCTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* *
67586998 TTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* *
67587063 AAACAGATTTGGCATC-CCTATATTC-AAGGATAGCAGATCGAAGACATAGCAGATCTGACCTTT
66 AAACAGATTTGGCATCTCC-ATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT
* * * *
67587126 GGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCCTTCTTGTGTTTACAAGGAGTAAATT
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67587191 GAAGACATAGCAGATCTGACCTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * * *
67587217 GTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCCAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * *
67587282 AAATAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTA
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * *
67587347 GACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67587412 AAGACATAGCAGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67587437 TTGTTTACTCTGAAGTAGATCCAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCAAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67587502 AAACAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAACAAATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * ** *
67587567 GTTGTTTTTACATCAAAGTAGAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67587632 AAGACATAGCAGATCTGACCTGCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * ** *
67587657 GTGTTTACACTGAAGCAGAGCC-AGATGATTTGGCATCTCTGTATTGTCAGAGAGA-GGATTGAA
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGA-ACAAATCGAA
* * * *
67587720 GAAAAAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCGAAGACGTAGCAGATCTGACCTTT
65 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT
* * * *
67587785 GGATGTTTTCACATCGAAGTATATCTAAGATGATTTGGCATTCTTATGTTTACAAGGAGCAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
67587850 GAAGACATAGCAGATCTGACCTTCAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * * *
67587876 GTGTTTACACTAAAATAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCAAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67587941 AAATAGATTTGGCATCTCCATATTTGATGGAGAG-ATGATCGAAGACATAGCAGATCTGACCTTT
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCA-GATCGAAGACATAGCAGATCTGACCTTT
* * * * * * *
67588005 GAACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGTAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
* * *
67588070 GAAGGCATAG-AGATCTGACTTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * * *
67588095 TTGTTTACTA-TAAAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCAAA
1 GTGTTTAC-ACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAA
* *
67588159 GAAACAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT-AGCCTT
65 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGA-CCTT
* *
67588223 TGGATGTTTTCACATCGAAGCAGATTCAAGATGATTCGGCATTCTTGTGTTTACAAGGAGCAAAT
129 TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* *
67588288 TGAAGACATAGCAGATCTGAACTTCAG
194 CGAAGACATAGCAGATCTGACCTTCAG
* * *
67588315 GTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* *
67588380 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * *** * *
67588445 GATGTTTTCACATCGAAGTACATCCAAGATTATTTATAATTCTTGTGTTTACAAGGAGTAAATTG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67588510 AAGACATAGCAGATCTAACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67588535 GTGTTTACACTGAAGCAGATCCAAGATGATTAGGCATCACTGTATTGTCAGATAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67588600 AAACAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67588665 GACGATTTCACATCAAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67588730 AAGACATAGCCGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67588755 TTATTTACTCTGAAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * ** * * *
67588820 AAATAGATTTGTCATCCCCATATTCGATAGAGAGCTGGTCGAAGACATAGCAGATCTGACCTTTA
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * ** *
67588885 GTTGTTTTCACATCAAAGCAGAAACAAGATTA-TTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67588949 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * * ** *
67588974 GTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTTTCAGAGAGCGGATTGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67589039 AAACAAATTTGGCATCTCCATATTTGACGGAGAGCAAATCGAAGACATGGTAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * *
67589104 GATGTTTTCACATCGAATCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCA
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67589169 AAGACATAGTAGATTTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * **
67589194 GTGTTTACACTGAAGCAGACCCAAGATGATTTGGTGTCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67589259 AAACAGATTTGGCATCTCCATATT-AACGGAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
*
67589323 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAGCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67589388 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* *
67589413 GTTTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * *
67589478 AAACATATTTGGCATCTCTATATTCGATGGAGAGAAGATCAAAGACATAG-ATTATCTGACCTTT
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA-GATCTGACCTTT
* * * * * * *
67589542 GCACGATTTCACATCGAAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67589607 GAAGACATAGCAGATCTGACCTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* *
67589633 TTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67589698 AAACAGATTTGGCATCCCCATATTCAACGAATAGCAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * *
67589763 GATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCCTTCGTGTGTTTACAAGGAGTAAATTG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67589828 AAGACATAGCAGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67589853 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTTAGAGAACAAATCCAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67589918 AAACAAATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * * *
67589983 AACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGTAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* * *
67590048 AAGGCATAGCAGATCTGACTTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67590073 TTGTTTACTA-TAAAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCAAA
1 GTGTTTAC-ACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAA
* *
67590137 GAAACAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT-AGCCTT
65 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGA-CCTT
*
67590201 TGGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
129 TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* * *
67590266 TGAAGACATAACAGATCTGAACTTCAG
194 CGAAGACATAGCAGATCTGACCTTCAG
* * *
67590293 GTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* *
67590358 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * *** * *
67590423 GATGTTTTCACATCGAAGTACATCCAAGATTATTTATAATTCTTGTGTTTACAAGGAGTAAATTG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67590488 AAGACATAGCAGATCTAACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* *
67590513 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67590578 AAACAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67590643 GACGATTTCACATCAAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67590708 AAGACATAGCCGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * *
67590733 TTATTTACTCTGAAGTAGATCCAAGATGATTTGCCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * *
67590798 AAATAGATTTGTCATCCCCATATTCGACGTAGAGCTGGTCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * ** *
67590863 G-TTTTTTCACATCAAAGCAGAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67590927 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * * ** *
67590952 GTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTTTCAGAGAGCGGATTGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67591017 AAACAAATTTGGCATCTCCATATTTGACGGAGAGCAAATCGAAGACATGGTAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * *
67591082 GATGTTTTCACATCGAATCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCA
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67591147 AAGACATAGTAGATTTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * ** * *
67591172 GTGTTTACACTGAAGCAGACCCAAGATGATTTGGTGTCTCAGTATTGTCAGATAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * *
67591237 AAACAGATTTGGCATCTCCATATT-AACGGAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
*
67591301 GATGCTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
67591366 AAGACATAGCAGATCTGACCTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* *
67591391 GTTTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * * *
67591456 AAACATATTTGGCATCTCTATATTCGATGGAGAGAAGATCAAAGACATAG-ATTATCTGAACTTT
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA-GATCTGACCTTT
* * * * * * *
67591520 GCACGATTTCACATCGAAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATC
130 GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATC
*
67591585 GAAGACATAGCAGATCTGACCTTTAG
195 GAAGACATAGCAGATCTGACCTTCAG
* * *
67591611 TTGTTTACTCTGAAGTGGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67591676 AAACAGATTTGGCATCCCCATATTCAACGAATAGCAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * * *
67591741 GATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCCTTCGTGTGTTTACAATGAGTAAATTG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67591806 AAGACATAGCAGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
** * * * *
67591831 GTGTTTACACTGAAACAGATCCAAGATGATTTGGCATCACTGTATTGTTAGAGAAAAAATCCAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * * *
67591896 AAACAAATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * *
67591961 GACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67592026 AAGACATAGCAGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* *
67592051 TTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * *
67592116 AAACAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCAAAGACATAGCAAATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * ** *
67592181 GTTGTTTTTACATCAAAGCAGAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
*
67592246 AAGACATAGCAGATCTGACTTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * * ** *
67592271 GTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCGGATTGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67592336 AAAAAAATTTGGCATCTCCATATTTGACGGAGAACAGATCGAAGACATGGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * *
67592401 CATGTTTTCACATCGAATCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* * *
67592466 AAGACATAGTAGATTTGACTTTCAG
196 AAGACATAGCAGATCTGACCTTCAG
* * ** *
67592491 GTGTTTACACTGAAGCAGA-CCCAGCATGATTTGGTGTCTCTGTATTGTCAGAGAATAAATCGAA
1 GTGTTTACACTGAAGTAGATCCAAG-ATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAA
* * * * *
67592555 GAAATAGATTTGGCATCTCCATATTCAACGGAGAGTAGATTG-AGCACGTAGCAGATCTGACCTT
65 GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG-ACATAGCAGATCTGACCTT
* *
67592619 TAGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
129 TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
*
67592684 CGAAGACATAGCAGATTTGACCTTCAG
194 CGAAGACATAGCAGATCTGACCTTCAG
67592711 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67592776 AAACATATTTGGAATCTCTATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCTTTG
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * *** * * * * *
67592841 CACGATTTCACATCGAATTGGATCCAAAATGATTTGGCATTATTTTGTTTACAAGAAGAAAATCG
131 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
* *
67592906 AAGACATAGCGGATCTGACCTTTAG
196 AAGACATAGCAGATCTGACCTTCAG
* * *
67592931 TTGTTTACTCTGAAGTAGATCCGAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
67592996 AAACAGATTTGTCATCCCCATATTCGACGGATAGCAGATCAAAGACATAGCAAATCT
66 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCT
67593053 CCATATTCAA
Statistics
Matches: 8558, Mismatches: 1181, Indels: 98
0.87 0.12 0.01
Matches are distributed among these distances:
214 196 0.02
215 1 0.00
216 1 0.00
218 2 0.00
219 1553 0.18
220 6788 0.79
221 17 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (220 bp):
GTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCG
AAGACATAGCAGATCTGACCTTCAG
Found at i:67583600 original size:834 final size:833
Alignment explanation
Indices: 67582211--67583886 Score: 2361
Period size: 834 Copynumber: 2.0 Consensus size: 833
67582201 TGACCTTCAG
*
67582211 GTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAC
1 GTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAC
* * *
67582276 AAACAGATTTCACATCTCCATATTCAAGGGAGAGCAGATAGAAGACATAGTAGATCTAACCTTTG
66 AAACAGATTTCACATCTCCATATTCAAGGGAGAGAAGATAGAAGACATAGCAGATCTAACCATTG
* * * * * *
67582341 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTCGCATTCTTGTGTTCACAAGGAGCAAATCG
131 GACGATTTCACATCGAAGCAGATCCAAAATGATTTCGAATTATTGTGTTCACAAGAAGCAAATCG
* *
67582406 AAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAATATGATTTGGCATCTC
196 AAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCAC
* * *
67582471 TGTATTGTCAGAGGACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
261 TGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGCCATCCCCATATTCGACGGAGAGCAGATC
* * **
67582536 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTACATCCAAGATGATTTAGAAT
326 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCACAAACAAGATGATTTAGAAT
** * * *
67582601 TCTTGTGTTTACAATTAGTAAATTGAAGAAATAGCAGATCTAACCTTCAGGTGTTTACACTGAAG
391 TCTTGTGTTTACAAGGAGCAAATCGAAGAAATAACAGATCTAACCTTCAGGTGTTTACACTGAAG
* * *
67582666 CAGATCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAGAAATAGATTTGGCAT
456 CAGAGCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCAT
* *
67582731 CTGCATATTCGATGGAGAGAAGATCGAAAACATAGCAGATCTGACCATTGGATGATTTAACATCA
521 CTCCATATTCGAAGGAGAGAAGATCGAAAACATAGCAGATCTGACC-TTGGATGATTTAACATCA
* * * *
67582796 AAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATTGCT-GAT
585 AAGCAGATCCAAAATGATTTGGCATTAGTGTGTTTACAAGAAGAAAATCGAAGACATAG-TAGAT
* * * * * *
67582860 ATGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAAA
649 ATGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGACATCTCTATATTGTCAGAAA
* * *
67582925 ACAAATCGAAGAAACAGATTTGTCATCCCCACATTTGACGGAGAGCAA-ATCGATGACATAGCAG
714 ACAAATCGAAGAAACAGATTTGGCATCCCCACATTCGACGGAGAG-AAGATCGAAGACATAGCAG
* * * * * * *
67582989 ATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGAATTGGCATTCTT
778 ATCTAACCATTGGACGATTTCACATCAAAGCAGATCCAAAATGAATTGGCATTATT
* *
67583045 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAG
1 GTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAC
* ** * * * *
67583110 AAATAGATTTGGCATCTGCATATTCAATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTG
66 AAACAGATTTCACATCTCCATATTCAAGGGAGAGAAGATAGAAGACATAGCAGATCTAACCATTG
* * *
67583175 GACGATTTCACATCGAAGTAGATCCAAAATGATTTGGAATTATTGTGTTTACAAGAAGCAAATCG
131 GACGATTTCACATCGAAGCAGATCCAAAATGATTTCGAATTATTGTGTTCACAAGAAGCAAATCG
* * * * *
67583240 AAGACATAGCAGATCTGACCATT-AGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCA
196 AAGACATAACAGATCTGACC-TTCAGGTGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCA
*
67583304 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTTCCATCCCCATATTCGACGGAGAGCAGAT
260 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGCCATCCCCATATTCGACGGAGAGCAGAT
* * * * * * *
67583369 CGAAGACATAGTAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGAAAGAAGATTATTTGGCA
325 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCACAAACAAGATGATTTAGAA
* * *
67583434 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAGATCTGACCTTTAGGTGTTTACACTGAA
390 TTCTTGTGTTTACAAGGAGCAAATCGAAGAAATAACAGATCTAACCTTCAGGTGTTTACACTGAA
* * * ** *
67583499 GTAGAGCCAAGATGATTTGGCAT-ATCTGTATTGTCAGAGAGCGGATTGAAGAAACAAATTTGGC
455 GCAGAGCCAAGATGATTTGGCATCA-CTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGC
* * * * *
67583563 ATCTCCATATTTGAAGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTGGATGTTTTCACATC
519 ATCTCCATATTCGAAGGAGAGAAGATCGAAAACATAGCAGATCTGACCTTGGATGATTTAACATC
* * * *
67583628 GAAGCAGATCCAAGATGATTTGGCATTGGTGTGTTTACAAGCAGAAAATCGAAGACATAGTAGAT
584 AAAGCAGATCCAAAATGATTTGGCATTAGTGTGTTTACAAGAAGAAAATCGAAGACATAGTAGAT
* ** *
67583693 TTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGATGTCTCTATATTGTCAGAGA
649 ATGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGACATCTCTATATTGTCAGAAA
** * *
67583758 ACAAATCGAAGAAACAGATTTGGCATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGA
714 ACAAATCGAAGAAACAGATTTGGCATCCCCACATTCGACGGAGAGAAGATCGAAGACATAGCAGA
* *
67583823 TCTGACCATTGGACGATTTCACATCAAAGCAGATCCAAAATGATTTGGCATTATT
779 TCTAACCATTGGACGATTTCACATCAAAGCAGATCCAAAATGAATTGGCATTATT
67583878 GTGTTTACA
1 GTGTTTACA
67583887 AGAAGCAAAT
Statistics
Matches: 736, Mismatches: 102, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
832 3 0.00
833 236 0.32
834 495 0.67
835 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (833 bp):
GTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCACTGTATTGTCAGAGAACAAATCGAAC
AAACAGATTTCACATCTCCATATTCAAGGGAGAGAAGATAGAAGACATAGCAGATCTAACCATTG
GACGATTTCACATCGAAGCAGATCCAAAATGATTTCGAATTATTGTGTTCACAAGAAGCAAATCG
AAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCAC
TGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGCCATCCCCATATTCGACGGAGAGCAGATC
GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCACAAACAAGATGATTTAGAAT
TCTTGTGTTTACAAGGAGCAAATCGAAGAAATAACAGATCTAACCTTCAGGTGTTTACACTGAAG
CAGAGCCAAGATGATTTGGCATCACTGTATTATCAGAGAACAAATCGAAGAAACAAATTTGGCAT
CTCCATATTCGAAGGAGAGAAGATCGAAAACATAGCAGATCTGACCTTGGATGATTTAACATCAA
AGCAGATCCAAAATGATTTGGCATTAGTGTGTTTACAAGAAGAAAATCGAAGACATAGTAGATAT
GACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGACATCTCTATATTGTCAGAAAAC
AAATCGAAGAAACAGATTTGGCATCCCCACATTCGACGGAGAGAAGATCGAAGACATAGCAGATC
TAACCATTGGACGATTTCACATCAAAGCAGATCCAAAATGAATTGGCATTATT
Found at i:67584643 original size:87 final size:89
Alignment explanation
Indices: 67584466--67584649 Score: 229
Period size: 87 Copynumber: 2.1 Consensus size: 89
67584456 CGGAGAGTAG
* *
67584466 ATCGAAGACGTAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* *
67584531 CATTCTTGTGTTTACAAGGAGCAA
66 CATTCTTGTATTTACAAGGAACAA
*
67584555 ATCGAAGACATAGCAGATCTGACCTTCAGG-T-TTTT-ACA-CTGAAGTAGATCCAAGATGATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTCACATC-GAAGCAGATCCAAGATGATTT
67584616 GGCA-TCTCTGTATTGT-C-AGAGAACAA
64 GGCATTCT-TGTATT-TACAAG-GAACAA
67584642 ATCGAAGA
1 ATCGAAGA
67584650 AACATATTTG
Statistics
Matches: 85, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
86 6 0.07
87 46 0.54
88 5 0.06
89 26 0.31
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTGTATTTACAAGGAACAA
Found at i:67586189 original size:87 final size:89
Alignment explanation
Indices: 67586006--67586189 Score: 193
Period size: 87 Copynumber: 2.1 Consensus size: 89
67585996 CGGAGAGCAG
* * * *
67586006 ATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
* * *
67586071 CTTTCTTGTGTTTACAAGGAGCAA
66 CTCTCTTGTATTTACAAGGAACAA
* *
67586095 ATTGAAGACATAGCAGATCTGAA-CTTCAGG-TGTTTACAC-T-GAAGCAAATCCAATATGATTT
1 ATCGAAGACATAGCAGATCT-AACCTT-AGGATGTTTACACATCGAAGCAAATCCAAGATGATTT
67586156 GGCATCTC-TGTATTGT-C-AGAGAACAA
64 GGC-TCTCTTGTATT-TACAAG-GAACAA
67586182 ATCGAAGA
1 ATCGAAGA
67586190 AACAGATTTG
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
86 2 0.03
87 39 0.49
88 5 0.06
89 30 0.38
90 4 0.05
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
CTCTCTTGTATTTACAAGGAACAA
Found at i:67586837 original size:87 final size:89
Alignment explanation
Indices: 67586660--67586843 Score: 218
Period size: 87 Copynumber: 2.1 Consensus size: 89
67586650 CGGAGAGCAG
* *
67586660 ATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGAAACAAGATGAATTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGTTGTTTACACATCAAAGCAGAAACAAGATGAATTGG
*
67586725 CATCCTTGTATTTACAAGGAGCAA
66 CATCCTTGTATTTACAAGGAACAA
* * ** *
67586749 ATCGAAGACATAGCAGATCTGACCTTCAGGTT-TTTACAC-T-GAAGTAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGTTGTTTACACATCAAAGCAGAAACAAGATGAATTG
67586811 GCAT-CTCTGTATTGT-C-AGAGAACAA
65 GCATCCT-TGTATT-TACAAG-GAACAA
67586836 ATCGAAGA
1 ATCGAAGA
67586844 AACATATTCG
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
86 4 0.05
87 41 0.49
88 2 0.02
89 32 0.39
90 4 0.05
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGTTGTTTACACATCAAAGCAGAAACAAGATGAATTGG
CATCCTTGTATTTACAAGGAACAA
Found at i:67589477 original size:87 final size:89
Alignment explanation
Indices: 67589295--67589478 Score: 211
Period size: 87 Copynumber: 2.1 Consensus size: 89
67589285 CGGAGAGTAG
* *
67589295 ATCGAAGACGTAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* * *
67589360 CATTCTTGTGTTTACAAGGAGCAA
66 CATTCTTATGTGTACAAGGAACAA
* *
67589384 AGCGAAGACATAGCAGATCTGACCTTCAGG-T-TTTT-ACA-CTGAAGTAGATCCAAGATGATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTCACATC-GAAGCAGATCCAAGATGATTT
67589445 GGCATCTCTATAT-TGT-C-AGAGAACAA
64 GGCAT-TCT-TATGTGTACAAG-GAACAA
67589471 ATCGAAGA
1 ATCGAAGA
67589479 AACATATTTG
Statistics
Matches: 82, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
86 3 0.04
87 41 0.50
88 9 0.11
89 27 0.33
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTATGTGTACAAGGAACAA
Found at i:67591017 original size:87 final size:88
Alignment explanation
Indices: 67590836--67590998 Score: 215
Period size: 87 Copynumber: 1.9 Consensus size: 88
67590826 GTAGAGCTGG
* * * *
67590836 TCGAAGACATAGCAGATCTGACCTTTGGTTTTTTCACATCAAAGCAGAAACAAGATTATTTGGCA
1 TCGAAGACATAGCAGATCTGACCTTAGGTGTTTACACATCAAAGCAGAAACAAGATGATTTGGCA
*
67590901 TTCTTGTGTTTACAAGGAGCAAA
66 TTCTTGTATTTACAAGGAGCAAA
* **
67590924 TCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC-T-GAAGCAGAGCCAAGATGATTTGGC
1 TCGAAGACATAGCAGATCTGACCTT-AGGTGTTTACACATCAAAGCAGAAACAAGATGATTTGGC
67590987 A-TCTCTGTATTT
65 ATTCT-TGTATTT
67590999 TCAGAGAGCG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
86 3 0.05
87 27 0.42
88 26 0.40
89 9 0.14
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (88 bp):
TCGAAGACATAGCAGATCTGACCTTAGGTGTTTACACATCAAAGCAGAAACAAGATGATTTGGCA
TTCTTGTATTTACAAGGAGCAAA
Found at i:67591450 original size:87 final size:89
Alignment explanation
Indices: 67591273--67591456 Score: 211
Period size: 87 Copynumber: 2.1 Consensus size: 89
67591263 CGGAGAGTAG
* *
67591273 ATCGAAGACGTAGCAGATCTGACCTTTGGATGCTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGCTTTCACATCGAAGCAGATCCAAGATGATTTGG
* * *
67591338 CATTCTTGTGTTTACAAGGAGCAA
66 CATTCTTATGTGTACAAGGAACAA
* *
67591362 ATCGAAGACATAGCAGATCTGACCTTCAGG-T--TTTTACA-CTGAAGTAGATCCAAGATGATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGCTTTCACATC-GAAGCAGATCCAAGATGATTT
67591423 GGCATCTCTATAT-TGT-C-AGAGAACAA
64 GGCAT-TCT-TATGTGTACAAG-GAACAA
67591449 ATCGAAGA
1 ATCGAAGA
67591457 AACATATTTG
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
86 3 0.04
87 45 0.54
88 5 0.06
89 28 0.34
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGCTTTCACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTATGTGTACAAGGAACAA
Found at i:67592110 original size:87 final size:89
Alignment explanation
Indices: 67591933--67592116 Score: 218
Period size: 87 Copynumber: 2.1 Consensus size: 89
67591923 TGGAGAGAAG
*
67591933 ATCGAAGACATAGCAGATCTGACCATTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGCAGATCCAAAATGATTTGG
* *
67591998 CATTATTGTGTTTACAAGAAGCAA
66 CATTACTGTATTTACAAGAAGCAA
* ** * *
67592022 ATCGAAGACATAGCAGATCTGACCTTTAGTTG-TTT-AC-TCTGAAGTAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATC-GAAGCAGATCCAAAATGATTTG
67592084 GCATCT-CTGTATTGT-CAGAGAA-CAA
65 GCAT-TACTGTATT-TACA-AGAAGCAA
67592109 ATCGAAGA
1 ATCGAAGA
67592117 AACAGATTTG
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
86 2 0.02
87 44 0.53
88 9 0.11
89 28 0.34
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGCAGATCCAAAATGATTTGG
CATTACTGTATTTACAAGAAGCAA
Found at i:67592770 original size:87 final size:89
Alignment explanation
Indices: 67592603--67592776 Score: 214
Period size: 87 Copynumber: 2.0 Consensus size: 89
67592593 ATTGAGCACG
* * * *
67592603 TAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGGCATTCTTGTG
1 TAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTA
*
67592668 TTTACAAGGAGCAAATCGAAGACA
66 TTTACAAGGAACAAATCGAAGACA
* * *
67592692 TAGCAGATTTGACCTTCAGGTGTTTACAC-T-GAAGTAGATCCAAGATGATTTGGCA-TCTCTGT
1 TAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATTCT-TGT
67592754 ATTGT-C-AGAGAACAAATCGAAGA
65 ATT-TACAAG-GAACAAATCGAAGA
67592777 AACATATTTG
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
86 5 0.07
87 42 0.57
88 2 0.03
89 25 0.34
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (89 bp):
TAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTA
TTTACAAGGAACAAATCGAAGACA
Found at i:67593075 original size:40 final size:40
Alignment explanation
Indices: 67593013--67593092 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
67593003 TTTGTCATCC
* *
67593013 CCATATTCGACGGATAGCAGATCAAAGACATAGCAAATCT
1 CCATATTCAACGGAGAGCAGATCAAAGACATAGCAAATCT
* * * *
67593053 CCATATTCAACGGAGAGTAGATCGAAGACGTAGCAGATCT
1 CCATATTCAACGGAGAGCAGATCAAAGACATAGCAAATCT
67593093 GACCTTTGGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (40 bp):
CCATATTCAACGGAGAGCAGATCAAAGACATAGCAAATCT
Found at i:67593701 original size:220 final size:220
Alignment explanation
Indices: 67593049--67600337 Score: 10252
Period size: 220 Copynumber: 33.2 Consensus size: 220
67593039 GACATAGCAA
* * *
67593049 ATCTCCATATTCAACGGAGAGTAGATCGAAGACGTAGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
*
67593114 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCAAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
*
67593179 TCTGACCTTCAGGTTTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67593244 AACAAATTGAAGAAACATATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * * * * * *
67593269 ATCTCTATATTCGATGGAGAGAAGATCGAAGACATAG-ATTATCTGACCTTTGCACGATTTCACA
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA-GATCTGACCTTTGGATGTTTTCACA
* * * *
67593333 TCGAAGTAGATCCAAAATGATTTGGTGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATAGC
65 TCGAAGCAGATCCAAGATGATTT-G-GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* * *
67593398 AGATCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
128 AGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
67593463 GAGAACAAATCGAAGAAACAGATTTGGC
193 GAGAACAAATCGAAGAAACAGATTTGGC
* * * *
67593491 ATCCCCATATTCAACGGATAGCAGATCGAAGACATAGCTGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * *
67593556 CAAAGCAGATCCAAGATGATTTGGCCTACTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67593621 TCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCACTGTATTGCCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
67593686 AACAAATCCAAGAAACAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * * * * *
67593711 ATCTGCATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACCATTGGACGATTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * *
67593776 CGAAGCAGATCCAAAATGATTTGGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67593841 TCTGACCTTTAGTTGTTTGCTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67593906 AACAAATCGAAGAAATAGATTTGTC
196 AACAAATCGAAGAAACAGATTTGGC
* * * *
67593931 ATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTTGGTTGTTTTTACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* ** * *
67593996 CAAAGCAGAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGAAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* *
67594061 TCTGACCTTCAGGTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* ** * *
67594126 AGCGGATTGAAGAAA-AAATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * *
67594150 ATCTCCATATTTGACGGAGAACAGATCGAAGACATGGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * *
67594215 CGAATCATATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAGTAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * * * **
67594280 TTTGACTTTCAGGTGTTTACACTAAAGCAGACCCAACATGATTTGGTGTCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* **
67594345 AATAAATCGAAGAATTAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * * * * *
67594370 ATCTCCATATTCAACGGAGAGTAGATTGAACACGTAGCAGATCTGACCTTTAGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67594435 CGAAGCAGATTCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
*
67594500 TTTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67594565 AACAAATCGAAGAAACATATTTGGA
196 AACAAATCGAAGAAACAGATTTGGC
* * * * * * *
67594590 ATCTCTATATTCGATGGAGAGAAGATCGAAGACATAGCAGATCTGACATTTGCACGATTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * *
67594655 CGAAGTC-GATCCAAAATGATTTGGCATTATTTTGTTTACAAGAAGAAAATCGAAGACATAGCAG
66 CGAAG-CAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAG
* * * * *
67594719 ATCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCGAGATGGTTTGGCATCTCTGTATTGTCAGA
130 ATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
*
67594784 GAACAAATCGAAGAAACAGATTTGTC
195 GAACAAATCGAAGAAACAGATTTGGC
* *
67594810 ATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * *
67594875 CGAAGCAGATTCAAGATGATTTGGCATCCTTGTGTTTACAAGGAGAAAATTGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
*
67594940 TCTGACCTTCAGGTGTTTACACT-AAATAAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
131 TCTGACCTTCAGGTGTTTACACTGAAGT-AGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
*
67595004 GAACAAATCGAAGAAACAGATTTGAC
195 GAACAAATCGAAGAAACAGATTTGGC
* * *
67595030 ATCTCCATATTCAAGGGAGAGCAGATCGAAGACATAGTAGATCT-ATCCTTTGGATGTTTTCACA
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGA-CCTTTGGATGTTTTCACA
*
67595094 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAG
65 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAG
* * * * *
67595159 ATTTGGCCTTCAGGCGTTTAAACTGAAG-AGGATCCAAGATTATTTGGCATCTCTGTATTGTCAG
130 ATCTGACCTTCAGGTGTTTACACTGAAGTA-GATCCAAGATGATTTGGCATCTCTGTATTGTCAG
** *
67595223 AGAACGGATTGAAGAAACAGATTTGGC
194 AGAACAAATCGAAGAAACAGATTTGGC
*
67595250 ATCTCCATATTCGACGGAGAGGAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * *
67595315 CGAAGCAGGTCCAAGATGATTTTGCTTTCTTGTGTTTACAAGGTGCAAATCGAATACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * *
67595380 TCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCCGTTTTGTCAGGG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
67595445 AACAAATCGAAGAAACAGATTTGGG
196 AACAAATCGAAGAAACAGATTTGGC
* * *
67595470 ATCACCATATTCGACGGAGAGCAGATCGAAGACATTGCAGATCTGACCTTTGGATATTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* ** * *
67595535 CAAAGCAGAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67595600 TTTGACCTTCAGGTGCTTACACTGAAGTAGAGCCAAAATGATTTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * * *
67595665 AGCAGATTGAAGAAACAGATTGGGC
196 AACAAATCGAAGAAACAGATTTGGC
* *
67595690 ATCTCCACATTTGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67595755 CGAAGCAGATCCAAGATGATTTTGCATTCTT-TGGTTTACAAGGAGCAAATCGAAGACATAGTAG
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGT-GTTTACAAGGAGCAAATCGAAGACATAGCAG
* * * **
67595819 ATTTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTGTCTCTGTATTGTCAGA
130 ATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
67595884 GAACAAATCGAAGAAACAGATTTGGC
195 GAACAAATCGAAGAAACAGATTTGGC
* * *
67595910 ATCTCCATATTCGACGGAGAGTAGATCGAAGACGTAGTAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * *
67595975 TGAAGCAGATCCAAGATGATTTGGCATT-TTCGTGTTTACAAGGAGGAAATAGAAGACATAGCAG
66 CGAAGCAGATCCAAGATGATTTGGCATTCTT-GTGTTTACAAGGAGCAAATCGAAGACATAGCAG
* * * *
67596039 ATCTGACGTTCAGTTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTGTCAGA
130 ATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
* ** * *
67596104 GAGCGGATTGAAGAAACAAATTTGGC
195 GAACAAATCGAAGAAACAGATTTGGC
* * * *
67596130 ATCTCCATATTTGACGGAGAGCTGATTGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAA
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * *
67596195 CGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAGTAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * * * **
67596260 TTTGACTTTCAGGTGTTTACACTAAAGCAGACCCAACATGATTTGGTGTCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* **
67596325 AATAAATCGAAGAATTAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * * * * *
67596350 ATCTCCATATTCAACGGAGAGTAGATTGAACACGTAGCAGATCTGACCTTTAGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67596415 CGAAACAGATTCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* *
67596480 TTTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAAAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67596545 AACAAATCGAAGAAACATATTTGGA
196 AACAAATCGAAGAAACAGATTTGGC
* * * * * * *
67596570 ATCTCTATATTCGATGGAGAGAAGATCGAAGACATAACAGATCTGACCTTTGCACGATTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
*** * * * * *
67596635 CGAATTGGATCCAAAATGATTTGGCATTATTTTGTTTACAAGAAGAAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67596700 TCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCCGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
67596765 AACAAATCGAAGAAACAGATTTGTC
196 AACAAATCGAAGAAACAGATTTGGC
* *
67596790 ATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * *
67596855 CGAAGCAGATTCAACATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATTGAAGACA-ATGCAG
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATA-GCAG
* *
67596919 ATCTGACCTTCAGGTGTTTACACT-AAATAAGATCCAAGATGATTTGGCATCTCTATATTGTCAG
130 ATCTGACCTTCAGGTGTTTACACTGAAGT-AGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
*
67596983 AGAACAAATCGAAGAAACAGATTTGAC
194 AGAACAAATCGAAGAAACAGATTTGGC
* * * * *
67597010 ATCTCCATATTCAAGGGAGAGCGGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67597075 CGAAGCAGATCTAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * *
67597140 TTTGGCCTTCAGGCGTTTAAACTGAAG-AGGATCCAAGATTATTTGGCATCTCTGTATTGTCAGA
131 TCTGACCTTCAGGTGTTTACACTGAAGTA-GATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
** *
67597204 GAACGGATTGAAGAAACAGATTTGGC
195 GAACAAATCGAAGAAACAGATTTGGC
* *
67597230 ATCTCCATATTCGACGGAGAGGAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * *
67597295 CGAAGCAGGTCCAAGATGATTTGGCTTTCTTGTGTTTCCATGGAGCAAATCGAATACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * *
67597360 TCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGACGATTTGGCATCTCTGTTTTGTCAGGG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
67597425 AACAAATCGAAGAAACAGATTTGGG
196 AACAAATCGAAGAAACAGATTTGGC
* *
67597450 ATCACCATATTCGACGGAAAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* ** * * *
67597515 CAAAGCAGAAACAAGATTATTTGGCATTCTCGTGTTTACAAGGAGTAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * *
67597580 TTTGACCTTCAGGTGCTTACACTGAAGTAGAGCCAAAATGATTTTGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * * *
67597645 AGCAGATTGAAGAAACAGATTGGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * *
67597670 ATCTCCACATTTGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67597735 TGAAGCAGATCCAAGATGATTTGGCATTCTT-TGGTTTACAAGGAGCAAATCGAAGACATAGTAG
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGT-GTTTACAAGGAGCAAATCGAAGACATAGCAG
* * **
67597799 ATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTGTCTCTGTATTGTCAGA
130 ATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
67597864 GAACAAATCGAAGAAACAGATTTGGC
195 GAACAAATCGAAGAAACAGATTTGGC
* * *
67597890 ATCTCCATATTCGACGGAGAGTAGATCGAAGACGTAGTAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
*
67597955 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGGAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67598020 TCTGACCTTCAGTTGTTTACACTGAAGCAGAGCCAAGATGATTTGGCATCTCTGTATTGTTAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* ** * *
67598085 ACCGGATTGAAGAAACAAATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * *
67598110 ATCTCCATATTTGACGGAGAGCTGATTGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67598175 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAGTAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * * **
67598240 TTTGACCTGCAGCTGTTTACACTGAAGCAGACCCAAGATGATTTGGTGTCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
67598305 AACAAATCGAAGAAACAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * * **
67598330 ATCCCCATATTCAACGGAGAGTAGATCGAAGATGTAGCAGATCTGACCTTTGTG-TGTTTTCACA
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG-GATGTTTTCACA
*
67598394 TCAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAG
65 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAG
* * *
67598459 ATCTAACCTTCAAGTTTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
130 ATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
*
67598524 GAACAAATCGAAGAAACATATTTGGC
195 GAACAAATCGAAGAAACAGATTTGGC
* * ** * * *
67598550 AACTCTATATTCGATAGAGAGAAGATCGAAGACATAGCAAATCTGACCTTTGGATGATTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * * *
67598615 CGAAGTAGATCCAAAATGATTTGGCATTATTGTGTTTACATGAAGCAAATCGAAGACATAGCTGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67598680 TCTGACCTTTAGTTGTTTACTCTGAAGTAGATCCAAGATGAATTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
67598745 AACAAATCGAAGAAACAGATTTGTC
196 AACAAATCGAAGAAACAGATTTGGC
* *
67598770 ATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * *
67598835 CGAAGCAGATTCAAGATGATTTGGCATTCTTGTGCTTACAAGGAGCAAATTGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * *
67598900 TCTAACCTTCAAGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67598965 AACAAATCGAAGAAACAGATCTGAC
196 AACAAATCGAAGAAACAGATTTGGC
* * * * *
67598990 ATCTCCATATTCAAGGGAGAGCAGATCGAATACATAGTAGATCTAACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * *
67599055 CGAAGCAGATCCAAAATTATTTGGCATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAACAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* **
67599120 TCTAACCTTCAGGTGTTTACACTGAAGCGGATCCAAGATGATTTGGCATCTCTAG-ATTGTCAGA
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCT-GTATTGTCAGA
** *
67599184 GAACGGATTGAAGAAACAGATTTTGGC
195 GAACAAATCGAAGAAACAGA-TTTGGC
* * *
67599211 ATCTCCATATTCGACAGAGAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCATAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * *
67599276 CGAAGTAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * *
67599341 TCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCTTCTCTGTTTTGTCAGGG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67599406 AACAAAACGTAGAAACAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * *
67599431 ATCACCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCCGACCTTTGGATGTTGTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67599496 CGAAGCAGATCTAAGATGATTTGGCATTCTTGTGTTTACAAGGTGCAAATCGAAGACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
*
67599561 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTTAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
67599626 AACAAATCGAAGAAACAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* *
67599651 ATCCCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * *
67599716 CAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGTAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * *
67599781 TCTGACCTTTAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTTAGAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
67599846 ATCAAATCGAAGAAACAGATCTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* *
67599871 ATCTCCATATTCGATGGAGAGCAGATCGAAGACATAGCAGATATGACCTTTGGATGTTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
67599936 CGAAGCAGATCCAAGAGGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACACAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * *
67600001 TCTGACCTTCAGGTTTTTACACTGAAGCAGATCCAAGATGATTTGTCATCTC-------T--GAG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * *
67600057 AATAAATTGAATAAACAGATTTGGC
196 AACAAATCGAAGAAACAGATTTGGC
* * * *
67600082 ATCTCCATATTCGAGGGAGAGTAGATCGAAGACATAGCAGATCTGACCTTCGGATATTTTCACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* ** * * *
67600147 TGAAGCAGATCCAAGATGATTCAGCATCCTTGTGTTTTCAAGGAGCAAATCGAAAACATAGCAGA
66 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * * *
67600212 TCTGACCTTTATGTGTTTACGCTGAAGCAGATCCAAGATGATTTGACATCTCTATATTGTCA-AG
131 TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA-
* * * * * *
67600276 GAACGAATCAAAGGTAGCGGATTTGAC
195 GAACAAATCGAA-GAAACAGATTTGGC
** * * *
67600303 ATCTCTGTATTCGACAGAGAGAAGATCGAAAACAT
1 ATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
67600338 CAACATGACA
Statistics
Matches: 6246, Mismatches: 782, Indels: 81
0.88 0.11 0.01
Matches are distributed among these distances:
211 187 0.03
213 1 0.00
218 1 0.00
219 207 0.03
220 5413 0.87
221 242 0.04
222 195 0.03
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
TCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGAAACAGATTTGGC
Found at i:67593912 original size:87 final size:89
Alignment explanation
Indices: 67593735--67593923 Score: 210
Period size: 87 Copynumber: 2.1 Consensus size: 89
67593725 TGGAGAGAAG
*
67593735 ATCGAAGACATAGCAGATCTGACCATTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGCAGATCCAAAATGATTTGG
* *
67593800 CATTATTGTGTTTACAAGAAGCAA
66 CATTACTGTATTTACAAGAAGCAA
* ** * * *
67593824 ATCGAAGACATAGCAGATCTGACCTTTAGTTG-TTT-GC-TCTGAAGTAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATC-GAAGCAGATCCAAAATGATTTG
67593886 GCATCT-CTGTATTGT-CAGAGAA-CAA
65 GCAT-TACTGTATT-TACA-AGAAGCAA
*
67593911 ATCGAAGAAATAG
1 ATCGAAGACATAG
67593924 ATTTGTCATC
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
86 2 0.02
87 47 0.55
88 9 0.10
89 28 0.33
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCATTAGACGATTTCACATCGAAGCAGATCCAAAATGATTTGG
CATTACTGTATTTACAAGAAGCAA
Found at i:67594577 original size:87 final size:89
Alignment explanation
Indices: 67594404--67594577 Score: 205
Period size: 87 Copynumber: 2.0 Consensus size: 89
67594394 ATTGAACACG
* * * *
67594404 TAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGGCATTCTTGTG
1 TAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTA
* *
67594469 TTTACAAGGAGCAAATTGAAGACA
66 TTTACAAGGAACAAATCGAAGACA
* * *
67594493 TAGCAGATTTGACCTTCAGGTGTTTACAC-T-GAAGTAGATCCAAGATGATTTGGCA-TCTCTGT
1 TAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATTCT-TGT
67594555 ATTGT-C-AGAGAACAAATCGAAGA
65 ATT-TACAAG-GAACAAATCGAAGA
67594578 AACATATTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
86 5 0.07
87 41 0.56
88 2 0.03
89 25 0.34
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (89 bp):
TAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTA
TTTACAAGGAACAAATCGAAGACA
Found at i:67596551 original size:87 final size:89
Alignment explanation
Indices: 67596384--67596557 Score: 212
Period size: 87 Copynumber: 2.0 Consensus size: 89
67596374 ATTGAACACG
* * * *
67596384 TAGCAGATCTGACCTTTAGATGTTTTCACATCGAAACAGATTCAAGATGATTTGGCATTCTTGTG
1 TAGCAGATCTGACCTTCAGATGTTTACACATCGAAACAGATCCAAGATGATTTGGCATTCTTGTA
* *
67596449 TTTACAAGGAGCAAATCGAAGACA
66 TTTACAAAGAACAAATCGAAGACA
* * **
67596473 TAGCAGATTTGACCTTCAGGTGTTTACAC-T-GAAGTAGATCCAAGATGATTTGGCA-TCTCTGT
1 TAGCAGATCTGACCTTCAGATGTTTACACATCGAAACAGATCCAAGATGATTTGGCATTCT-TGT
67596535 ATTGT-CAAAGAACAAATCGAAGA
65 ATT-TACAAAGAACAAATCGAAGA
67596558 AACATATTTG
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
86 3 0.04
87 43 0.59
88 2 0.03
89 25 0.34
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (89 bp):
TAGCAGATCTGACCTTCAGATGTTTACACATCGAAACAGATCCAAGATGATTTGGCATTCTTGTA
TTTACAAAGAACAAATCGAAGACA
Found at i:67597877 original size:87 final size:88
Alignment explanation
Indices: 67597694--67597853 Score: 211
Period size: 87 Copynumber: 1.8 Consensus size: 88
67597684 TGGAGAGCAG
* *
67597694 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATTGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACACTGAAGCAGATCCAAGATGATTTGG
* *
67597759 CATTCTTTGGTTTACAAGGAGCAA
66 -ATTCTCTGGTTTACAAGGAACAA
* *
67597783 ATCGAAGACATAGTAGATTTGACCTTCAGG-TG-TTT-ACACTGAAGCAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTCACACTGAAGCAGATCCAAGATGATTTG
67597845 G-TGTCTCTG
65 GAT-TCTCTG
67597854 TATTGTCAGA
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 1 0.02
86 5 0.08
87 27 0.42
88 3 0.05
89 26 0.41
90 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (88 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACACTGAAGCAGATCCAAGATGATTTGG
ATTCTCTGGTTTACAAGGAACAA
Found at i:67598751 original size:87 final size:89
Alignment explanation
Indices: 67598574--67598757 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 89
67598564 TAGAGAGAAG
* *
67598574 ATCGAAGACATAGCAAATCTGACCTTTGGATGATTTCACATCGAAGTAGATCCAAAATGATTTGG
1 ATCGAAGACATAGCAAATCTGACCTTTAGATGATTTCACATCGAAGTAGATCCAAAATGAATTGG
* * *
67598639 CATTATTGTGTTTACATGAAGCAA
66 CATTACTGTATTTACATGAAACAA
** * *
67598663 ATCGAAGACATAGCTGATCTGACCTTTAGTTG-TTT-AC-TCTGAAGTAGATCCAAGATGAATTG
1 ATCGAAGACATAGCAAATCTGACCTTTAGATGATTTCACATC-GAAGTAGATCCAAAATGAATTG
67598725 GCATCT-CTGTATTGT-CA-GAGAACAA
65 GCAT-TACTGTATT-TACATGA-AACAA
67598750 ATCGAAGA
1 ATCGAAGA
67598758 AACAGATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
86 4 0.05
87 45 0.55
88 5 0.06
89 28 0.34
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (89 bp):
ATCGAAGACATAGCAAATCTGACCTTTAGATGATTTCACATCGAAGTAGATCCAAAATGAATTGG
CATTACTGTATTTACATGAAACAA
Found at i:67598971 original size:87 final size:89
Alignment explanation
Indices: 67598794--67598977 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 89
67598784 CGGAGAGCAG
** * * *
67598794 ATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTAACCTTAAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGG
* *
67598859 CATTCTTGTGCTTACAAGGAGCAA
66 CATTCTTGTGATTACAAGGAACAA
*
67598883 ATTGAAGACATAGCAGATCTAACCTTCAAG-TGTTTACAC-T-AAAGCAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTAACCTT-AAGATGTTTACACATCAAAGCAGATCCAAGATGATTTG
*
67598945 GCA-TCTCTGT-ATTGTC-AGAGAACAA
65 GCATTCT-TGTGATT-ACAAG-GAACAA
67598970 ATCGAAGA
1 ATCGAAGA
67598978 AACAGATCTG
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
86 7 0.09
87 39 0.48
88 1 0.01
89 33 0.41
90 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTAACCTTAAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGG
CATTCTTGTGATTACAAGGAACAA
Found at i:67599858 original size:87 final size:89
Alignment explanation
Indices: 67599669--67599829 Score: 247
Period size: 89 Copynumber: 1.8 Consensus size: 89
67599659 ATTCGACGGA
* *
67599669 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTACACATCAAAGCAGATCCAAGATG
67599734 ATTTGGCATTCTTGTGTTTACAAG
66 ATTTGGCATTCTTGTGTTTACAAG
* * *
67599758 GAGCAAATTGAAGACATAGTAGATCTGACCTTTAGG-TGTTTACAC-T-GAAGCAGATCCAAGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTT-GGTTGTTTACACATCAAAGCAGATCCAAGAT
67599820 GATTTGGCAT
65 GATTTGGCAT
67599830 CTCTGTATTG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 38 0.58
90 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (89 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTACACATCAAAGCAGATCCAAGATG
ATTTGGCATTCTTGTGTTTACAAG
Found at i:67600275 original size:87 final size:88
Alignment explanation
Indices: 67600106--67600277 Score: 199
Period size: 87 Copynumber: 2.0 Consensus size: 88
67600096 GGGAGAGTAG
* *
67600106 ATCGAAGACATAGCAGATCTGACCTTCGGATATTTTCACATTGAAGCAGATCCAAGATGATTCAG
1 ATCGAAAACATAGCAGATCTGACCTTC-GATATTTTCACACTGAAGCAGATCCAAGATGATTCAG
* * *
67600171 CATCCTTGTGTTTTCAAGGAGCAA
65 CATCCTTATATTGTCAAGGAGCAA
* * * *
67600195 ATCGAAAACATAGCAGATCTGACCTT-TATGTGTTT-ACGCTGAAGCAGATCCAAGATGATT-TG
1 ATCGAAAACATAGCAGATCTGACCTTCGATAT-TTTCACACTGAAGCAGATCCAAGATGATTCAG
67600257 ACAT-CTCTATATTGTCAAGGA
65 -CATCCT-TATATTGTCAAGGA
67600278 ACGAATCAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
86 3 0.04
87 40 0.56
88 3 0.04
89 25 0.35
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (88 bp):
ATCGAAAACATAGCAGATCTGACCTTCGATATTTTCACACTGAAGCAGATCCAAGATGATTCAGC
ATCCTTATATTGTCAAGGAGCAA
Found at i:67600694 original size:19 final size:19
Alignment explanation
Indices: 67600666--67600763 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
67600656 AATCTTTAAG
67600666 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
67600685 GATATTCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
67600704 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
67600721 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
67600740 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
67600761 GAT
1 GAT
67600764 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:67600696 original size:36 final size:35
Alignment explanation
Indices: 67600656--67600763 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
67600646 ATGGAAATAT
*
67600656 AATCTTTAAGGATATGCAATCTTAGATATGATATTC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
67600692 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
67600728 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
67600764 CTTGTAATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.45
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:67604355 original size:16 final size:16
Alignment explanation
Indices: 67604305--67604355 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
67604295 ATGGAAATAT
*
67604305 AATCTTTAAGTATATGC
1 AATCTTGAAG-ATATGC
67604322 AATCTTAGATATGATATGC
1 AATCTT-GA-A-GATATGC
67604341 AATCTTGAAGATATG
1 AATCTTGAAGATATG
67604356 ATCTTGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (16 bp):
AATCTTGAAGATATGC
Found at i:67604374 original size:22 final size:21
Alignment explanation
Indices: 67604316--67604357 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
67604306 ATCTTTAAGT
67604316 ATATGCAATCTT--AGATATG
1 ATATGCAATCTTGAAGATATG
67604335 ATATGCAATCTTGAAGATATG
1 ATATGCAATCTTGAAGATATG
67604356 AT
1 AT
67604358 CTTGTAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
21 9 0.43
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (21 bp):
ATATGCAATCTTGAAGATATG
Found at i:67606402 original size:19 final size:18
Alignment explanation
Indices: 67606376--67606411 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
67606366 AAATTTGTCG
67606376 AAAATAACCAAAATTCAT
1 AAAATAACCAAAATTCAT
*
67606394 AAAATTAACTAAAATTCA
1 AAAA-TAACCAAAATTCA
67606412 ACATGTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAATAACCAAAATTCAT
Found at i:67612870 original size:13 final size:13
Alignment explanation
Indices: 67612852--67612882 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
67612842 CATTTGGAGG
67612852 ATTTGATGTCAAA
1 ATTTGATGTCAAA
67612865 ATTTGATGTCAAA
1 ATTTGATGTCAAA
67612878 ATTTG
1 ATTTG
67612883 TTCTAATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (13 bp):
ATTTGATGTCAAA
Found at i:67615585 original size:32 final size:32
Alignment explanation
Indices: 67615549--67615617 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
67615539 AAAGGGTTAT
67615549 TAAAAAG-AGTAAGATTTTAAACTAAATAAAAA
1 TAAAAAGTA-TAAGATTTTAAACTAAATAAAAA
67615581 T-AAAAGTTATAAGATTTTAAACTAAATAAAAA
1 TAAAAAG-TATAAGATTTTAAACTAAATAAAAA
67615613 TAAAA
1 TAAAA
67615618 GTTATAATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
31 5 0.15
32 25 0.74
33 4 0.12
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (32 bp):
TAAAAAGTATAAGATTTTAAACTAAATAAAAA
Found at i:67615618 original size:32 final size:32
Alignment explanation
Indices: 67615558--67615624 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
67615548 TTAAAAAGAG
67615558 TAAGATTTTAAACTAAATAAAAATAAAAGTTA
1 TAAGATTTTAAACTAAATAAAAATAAAAGTTA
67615590 TAAGATTTTAAACTAAATAAAAATAAAAGTTA
1 TAAGATTTTAAACTAAATAAAAATAAAAGTTA
67615622 TAA
1 TAA
67615625 TGCACGATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (32 bp):
TAAGATTTTAAACTAAATAAAAATAAAAGTTA
Found at i:67618046 original size:25 final size:25
Alignment explanation
Indices: 67618025--67618073 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
67618015 ATTTCACATC
*
67618025 TCATGTGAGCATTTACAGTCACAGA
1 TCATGAGAGCATTTACAGTCACAGA
*
67618050 TCGTGAGAGCATTTACCA-TCACAG
1 TCATGAGAGCATTTA-CAGTCACAG
67618074 CTTTTGTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
TCATGAGAGCATTTACAGTCACAGA
Found at i:67618163 original size:27 final size:27
Alignment explanation
Indices: 67618133--67618189 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
67618123 ATTGGGTGAA
67618133 AAATGAGTAAATGGAAATAGATATATG
1 AAATGAGTAAATGGAAATAGATATATG
*** * *
67618160 AAATTTTTATATGGAAATAGATTTATG
1 AAATGAGTAAATGGAAATAGATATATG
67618187 AAA
1 AAA
67618190 ATGTTATATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (27 bp):
AAATGAGTAAATGGAAATAGATATATG
Found at i:67618170 original size:13 final size:13
Alignment explanation
Indices: 67618154--67618227 Score: 71
Period size: 13 Copynumber: 5.6 Consensus size: 13
67618144 TGGAAATAGA
*
67618154 TATATGAAATTTT
1 TATATGAAATGTT
*
67618167 TATATGGAAATAGAT
1 TATAT-GAAAT-GTT
67618182 T-TATGAAAATG-T
1 TATATG-AAATGTT
*
67618194 TATATGAAGTGTT
1 TATATGAAATGTT
*
67618207 TATATGAAATATT
1 TATATGAAATGTT
67618220 TATATGAA
1 TATATGAA
67618228 TATAGATATG
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
12 6 0.12
13 31 0.61
14 12 0.24
15 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (13 bp):
TATATGAAATGTT
Found at i:67618222 original size:26 final size:27
Alignment explanation
Indices: 67618146--67618242 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
67618136 TGAGTAAATG
*
67618146 GAAATAGA-TATATGAAATTTTTATAT
1 GAAATAGATTATATGAAATATTTATAT
67618172 GGAAATAGATT-TATGAAA-ATGTTATAT
1 -GAAATAGATTATATGAAATAT-TTATAT
* *
67618199 GAAGT-GTTTATATGAAATATTTATAT
1 GAAATAGATTATATGAAATATTTATAT
*
67618225 GAATATAGA-TATGTGAAA
1 GAA-ATAGATTATATGAAA
67618243 AGGGACATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
25 3 0.05
26 21 0.36
27 32 0.55
28 2 0.03
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.39
Consensus pattern (27 bp):
GAAATAGATTATATGAAATATTTATAT
Found at i:67622614 original size:42 final size:42
Alignment explanation
Indices: 67622531--67622652 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 42
67622521 CCACATCTAT
*
67622531 GACATTGGCATCGACTTCTGTTTTACATGTAAGACCATGTCTG
1 GACATTGGCATCGAC-TCTGATTTACATGTAAGACCATGTCTG
* *
67622574 AGACATTGGCATCGTA-TCTGATTT-CGTGTAAGACCCTGTCTG
1 -GACATTGGCATCG-ACTCTGATTTACATGTAAGACCATGTCTG
* * *
67622616 GAACAGTGGCATCGATGTTTGA-TTACATGTAAGACCA
1 G-ACATTGGCATCGA-CTCTGATTTACATGTAAGACCA
67622653 CGTTTGGGAC
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
41 2 0.03
42 29 0.44
43 21 0.32
44 13 0.20
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
GACATTGGCATCGACTCTGATTTACATGTAAGACCATGTCTG
Found at i:67622670 original size:43 final size:41
Alignment explanation
Indices: 67622553--67622675 Score: 104
Period size: 42 Copynumber: 2.9 Consensus size: 41
67622543 GACTTCTGTT
* * *
67622553 TTACATGTAAGACCATGTCTGAGACATTGGCATCGTATCTGA
1 TTACATGTAAGACCACGTCTGGGAC-GTGGCATCGTATCTGA
* * * * *
67622595 TTTCGTGTAAGACC-CTGTCTGGAACAGTGGCATCGATGTTTGA
1 TTACATGTAAGACCAC-GTCTGGGAC-GTGGCATCG-TATCTGA
* *
67622638 TTACATGTAAGACCACGTTTGGGACGTCGGCATTGTAT
1 TTACATGTAAGACCACGTCTGGGACGT-GGCATCGTAT
67622676 ATGCTTTTTG
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
42 32 0.51
43 30 0.48
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (41 bp):
TTACATGTAAGACCACGTCTGGGACGTGGCATCGTATCTGA
Found at i:67632638 original size:40 final size:40
Alignment explanation
Indices: 67632601--67632786 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
67632591 GCTACTCGTT
*
67632601 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67632641 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
67632681 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
67632721 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67632762 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67632787 CATCATTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67640613 original size:40 final size:40
Alignment explanation
Indices: 67640576--67640801 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
67640566 GCTACTCGTT
* *
67640576 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
67640616 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
67640656 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
67640696 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
67640736 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
67640777 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
67640802 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:67644694 original size:33 final size:33
Alignment explanation
Indices: 67644656--67644720 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
67644646 ATTATATGTT
*
67644656 ATATTT-TTAATATATACTATTATTTATAATATC
1 ATATTTATTAATATATACT-TTATCTATAATATC
* * *
67644689 ATATTTATTATTTTATACTTTATCTATCATAT
1 ATATTTATTAATATATACTTTATCTATAATAT
67644721 AGTTTATATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 17 0.63
34 10 0.37
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (33 bp):
ATATTTATTAATATATACTTTATCTATAATATC
Found at i:67644697 original size:21 final size:20
Alignment explanation
Indices: 67644648--67644701 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
67644638 TAAATTTTAT
*
67644648 TATATGTTA-TATTTTTAATA
1 TATAT-TTATTATTTATAATA
*
67644668 TATA-CTATTATTTATAATA
1 TATATTTATTATTTATAATA
67644687 TCATATTTATTATTT
1 T-ATATTTATTATTT
67644702 TATACTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.07
19 11 0.39
20 7 0.25
21 8 0.29
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (20 bp):
TATATTTATTATTTATAATA
Found at i:67657497 original size:40 final size:40
Alignment explanation
Indices: 67657442--67657910 Score: 794
Period size: 40 Copynumber: 11.7 Consensus size: 40
67657432 TGAGCATTGG
67657442 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
67657482 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
67657522 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
67657562 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
67657602 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
67657642 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
67657682 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
67657722 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
67657762 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
** * *
67657802 AATATGCCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
67657842 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
67657882 GATATGTCCGGGTTAAGACCTGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
67657911 ATGTGTTTGC
Statistics
Matches: 404, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 404 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:67666232 original size:40 final size:40
Alignment explanation
Indices: 67666138--67666603 Score: 719
Period size: 40 Copynumber: 11.7 Consensus size: 40
67666128 AGCATTGGAA
*
67666138 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGA-TTAA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
67666177 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
67666217 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT-G
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
*
67666256 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAA
1 -TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
* * *
67666297 TATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT-G
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
*
67666336 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAA
1 -TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
*
67666377 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
67666417 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT-G
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
*
67666456 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAA
1 -TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
* * *
67666497 TATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT-G
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
*
67666536 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT-G
1 -TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
* *
67666576 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 -TATATCCGGGCTAAGACCCGAAGGCAA
67666604 ATGTGTTTGC
Statistics
Matches: 397, Mismatches: 22, Indels: 15
0.91 0.05 0.03
Matches are distributed among these distances:
39 36 0.09
40 361 0.91
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAG
Found at i:67666349 original size:120 final size:120
Alignment explanation
Indices: 67666136--67666603 Score: 814
Period size: 120 Copynumber: 3.9 Consensus size: 120
67666126 TGAGCATTGG
67666136 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGA-TTAATATATCCGGGCTAAGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAG
67666200 GCAATTATGCGAGTT-AGTATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
67666255 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAG
*
67666320 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
67666375 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAG
67666440 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
67666495 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAG
* * *
67666560 GCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGGCAA
66 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
67666604 ATGTGTTTGC
Statistics
Matches: 332, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
119 36 0.11
120 295 0.89
121 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (120 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAG
GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:67669612 original size:44 final size:44
Alignment explanation
Indices: 67669559--67670036 Score: 314
Period size: 44 Copynumber: 10.8 Consensus size: 44
67669549 ATCTAAGATT
* *
67669559 ATTTGGCGTCTCTGTATTATCAGAGAGCAGATCAAAGATAGCAA
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * ** *
67669603 ATTTGGCGTCTTTGTATTTGTAAGAGAGCAGATTGAAGATAGCTG
1 ATTTGGCGTCTCTGTA-TTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * * *
67669648 ATATGGTGTCCCTGTATTGTCAGGGAACAGATCGAAGAAATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC-AA-AGATAGCAG
* * * * * *
67669694 ATTTGGCTTTCACATGT-TT-ACATTGA-AGGAAATCTAAGAT----G
1 ATTTGGC-GTCTC-TGTATTGTCA--GAGAGCAGATCAAAGATAGCAG
* * * *
67669735 ATTTGGCATCACTGTATTGTCAGAGAGCAGATCAAAAATAGTAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* *
67669779 ATTTGGCGTCTCTGTATTTGTCA-AGGAGCAGATCGAGGATAGCAG
1 ATTTGGCGTCTCTGTA-TTGTCAGA-GAGCAGATCAAAGATAGCAG
** * * * * * *
67669824 ATTTGGTATCTCTGTATGGTCAGAGAGTAAATTAGAGATAGTAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * * *
67669868 ATTTGACATCTTTGTATTCGAC-GAGGAGCAAATCCAAGA-AGCAG
1 ATTTGGCGTCTCTGTATT-GTCAGA-GAGCAGATCAAAGATAGCAG
* * *
67669912 ATTTGGCATCCCTGTATTGTCA-AGGAGCAGATCGAAA-ACAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGA-GAGCAGATC-AAAGATAGCAG
* *
67669956 ATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * *
67670000 ATTTGGCGTCTTTGTATTCGACGGTGAGCAGATCAAA
1 ATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCAAA
67670037 ATATCAGCAT
Statistics
Matches: 331, Mismatches: 78, Indels: 49
0.72 0.17 0.11
Matches are distributed among these distances:
39 5 0.02
40 16 0.05
41 10 0.03
43 15 0.05
44 155 0.47
45 101 0.31
46 15 0.05
47 10 0.03
48 4 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
Found at i:67669714 original size:176 final size:176
Alignment explanation
Indices: 67669499--67669846 Score: 500
Period size: 176 Copynumber: 2.0 Consensus size: 176
67669489 TTACAAGGAG
* * * *
67669499 CAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATTATTTG
1 CAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACACTGAAGCAAATCTAAGATGATTTG
* * * *
67669564 GCGTCTCTGTATTATCAGAGAGCAGATCAAAGATAGCAAATTTGGCGTCTTTGTATTTGT-AAGA
66 GCATCACTGTATTATCAGAGAGCAGATCAAAAATAGCAAATTTGGCGTCTCTGTATTTGTCAAG-
* * * *
67669628 GAGCAGATTGAAGATAGCTGATATGGTGTCCCTGTATTGTCAGGGAA
130 GAGCAGATCGAAGATAGCAGATATGGTATCCCTGTATGGTCAGGGAA
* *
67669675 CAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACATTGAAGGAAATCTAAGATGATTTG
1 CAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACACTGAAGCAAATCTAAGATGATTTG
* * *
67669740 GCATCACTGTATTGTCAGAGAGCAGATCAAAAATAGTAGATTTGGCGTCTCTGTATTTGTCAAGG
66 GCATCACTGTATTATCAGAGAGCAGATCAAAAATAGCAAATTTGGCGTCTCTGTATTTGTCAAGG
* * *
67669805 AGCAGATCGAGGATAGCAGATTTGGTATCTCTGTATGGTCAG
131 AGCAGATCGAAGATAGCAGATATGGTATCCCTGTATGGTCAG
67669847 AGAGTAAATT
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
176 148 0.98
177 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (176 bp):
CAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACACTGAAGCAAATCTAAGATGATTTG
GCATCACTGTATTATCAGAGAGCAGATCAAAAATAGCAAATTTGGCGTCTCTGTATTTGTCAAGG
AGCAGATCGAAGATAGCAGATATGGTATCCCTGTATGGTCAGGGAA
Found at i:67669767 original size:87 final size:86
Alignment explanation
Indices: 67669405--67669785 Score: 237
Period size: 89 Copynumber: 4.4 Consensus size: 86
67669395 ATATTCGATG
* * ** * * * * *
67669405 GAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTCCATATCGAAGTAGATCCAAG
1 GAGAGCAGATCGAAGAAATAGCAGATTTGGCTTTC-ACATGTTTACAT-T-GAAGCAAATCTAAG
* *
67669469 GTGATTTGGCATCCT-TATGTTTACA
63 ATGATTTGGCATCCTGTAT-TGT-CA
* * **
67669494 -AGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGAT
1 GA-GAGCAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACATTGAAGCAAATCTAAGAT
* * *
67669558 TATTTGGCGTCTCTGTATTATCA
65 GATTTGGCATC-CTGTATTGTCA
* * *** *
67669581 GAGAGCAGATC-AA-AGATAGCAAATTTGGCGTCTTTGTAT-TTGTA-A--GAGAGCAGAT-TGA
1 GAGAGCAGATCGAAGAAATAGCAGATTTGGC-T-TTCACATGTT-TACATTGA-AGCAAATCT-A
* **
67669639 AGATAGCTGATATGGTGTCCCTGTATTGTCA
61 AG--A--TGATTTGGCAT-CCTGTATTGTCA
* * *
67669670 GGGAACAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACATTGAAGGAAATCTAAGATG
1 GAGAGCAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACATTGAAGCAAATCTAAGATG
67669735 ATTTGGCATCACTGTATTGTCA
66 ATTTGGCATC-CTGTATTGTCA
*
67669757 GAGAGCAGATC-AA-AAATAGTAGATTTGGC
1 GAGAGCAGATCGAAGAAATAGCAGATTTGGC
67669786 GTCTCTGTAT
Statistics
Matches: 227, Mismatches: 42, Indels: 50
0.71 0.13 0.16
Matches are distributed among these distances:
84 3 0.01
85 38 0.17
86 8 0.04
87 66 0.29
88 8 0.04
89 72 0.32
90 7 0.03
91 22 0.10
92 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (86 bp):
GAGAGCAGATCGAAGAAATAGCAGATTTGGCTTTCACATGTTTACATTGAAGCAAATCTAAGATG
ATTTGGCATCCTGTATTGTCA
Found at i:67669972 original size:132 final size:133
Alignment explanation
Indices: 67669777--67670022 Score: 352
Period size: 132 Copynumber: 1.9 Consensus size: 133
67669767 CAAAAATAGT
* * ** * *
67669777 AGATTTGGCGTCTCTGTATTTGTCAAGGAGCAGATCGAGGATAGCAGATTTGGTATCTCTGTATG
1 AGATTTGGCATCCCTGTATTTGTCAAGGAGCAGATCGAAAACAGCAGATTTGGCATCTCTGTATG
*
67669842 GTCAGAGAGTAAATTAG-AGATAGTAGATTTGACATCTTTGTATTCGACGAGGAGCAAATCCAAG
66 GTCAGAGAGTAAA-TAGAAGATAGCAGATTTGACATCTTTGTATTCGACGAGGAGCAAATCCAAG
67669906 AAGC
130 AAGC
* *
67669910 AGATTTGGCATCCCTGTA-TTGTCAAGGAGCAGATCGAAAACAGCAGATTTGGCGTCTCTGTATT
1 AGATTTGGCATCCCTGTATTTGTCAAGGAGCAGATCGAAAACAGCAGATTTGGCATCTCTGTATG
* * * *
67669974 GTCAGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTTTGTATTCGACG
66 GTCAGAGAGTAAATAGAAGATAGCAGATTTGACATCTTTGTATTCGACG
67670023 GTGAGCAGAT
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
131 2 0.02
132 81 0.82
133 16 0.16
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (133 bp):
AGATTTGGCATCCCTGTATTTGTCAAGGAGCAGATCGAAAACAGCAGATTTGGCATCTCTGTATG
GTCAGAGAGTAAATAGAAGATAGCAGATTTGACATCTTTGTATTCGACGAGGAGCAAATCCAAGA
AGC
Found at i:67674308 original size:17 final size:17
Alignment explanation
Indices: 67674286--67674324 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
67674276 ATTTTTTTAA
*
67674286 AAAATTACATAAA-AATT
1 AAAATTA-ATAAATAAGT
67674303 AAAATTAATAAATAAGT
1 AAAATTAATAAATAAGT
67674320 AAAAT
1 AAAAT
67674325 AAAAACACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAATTAATAAATAAGT
Found at i:67677170 original size:40 final size:40
Alignment explanation
Indices: 67676969--67677156 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
67676959 TATTCGGATG
* * *
67676969 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
67677009 A-ATTCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67677048 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
67677088 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67677128 ATAACCGAGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
67677157 AGAGAGTAGC
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 33 0.24
40 102 0.76
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67677170 original size:80 final size:79
Alignment explanation
Indices: 67676969--67677189 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 79
67676959 TATTCGGATG
* *
67676969 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CTATA-TCCGGGCTAAGCCCGAAGGC
*
67677032 AATTGTGCGAGTTATT
64 AATTGTGCGAGTTACT
* *
67677048 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCCGGGCTAAG-CCCGAAGGC
*
67677112 ATTTGTGCGAGTTACT
64 AATTGTGCGAGTTACT
* * * *
67677128 ATAACCGAGCTAAGTCCCGAAGGCATTTGAGAGAGTAGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGGCT-AAGCCCGAAGG
67677190 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
79 59 0.48
80 65 0.52
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:67677186 original size:119 final size:119
Alignment explanation
Indices: 67676969--67677189 Score: 295
Period size: 119 Copynumber: 1.9 Consensus size: 119
67676959 TATTCGGATG
* * *
67676969 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGGCAA
* * * **
67677034 TTGTGCGAGTTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGAGAGTTACTATATCCGGGCTAAACCCCGAAGGCATTTGTGCGAGTTACT
* *
67677088 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGAGCTAAG-CCCGAAGGC
*
67677152 ATTTGAGAGAG-TAGCTATATCC-GGCTAAACCCCGAAGG
64 AATTGAGAGAGTTA-CTATATCCGGGCTAAACCCCGAAGG
67677190 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 2 0.02
119 62 0.70
120 24 0.27
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGAGCTAAGCCCGAAGGCAA
TTGAGAGAGTTACTATATCCGGGCTAAACCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67680506 original size:47 final size:47
Alignment explanation
Indices: 67680428--67680836 Score: 665
Period size: 47 Copynumber: 8.6 Consensus size: 47
67680418 CCCTTCGGGA
* * * * * *
67680428 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67680475 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67680522 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67680569 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67680616 CTTATCACATAGATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67680663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67680712 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67680759 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67680808 CTTATCACATATATTTACACTTTCACATT
1 CTTATCACATATA--TACACTTTCACATT
67680837 TATTCAAATA
Statistics
Matches: 340, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 234 0.69
49 106 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67680589 original size:94 final size:95
Alignment explanation
Indices: 67680428--67680836 Score: 669
Period size: 96 Copynumber: 4.3 Consensus size: 95
67680418 CCCTTCGGGA
* * * * * * * *
67680428 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
67680492 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
67680522 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
*
67680586 CTTTTACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* *
67680616 CTTATCACATAGATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
67680681 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
67680712 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
67680777 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
67680808 CTTATCACATATATTTACACTTTCACATT
1 CTTATCACATATA--TACACTTTCACATT
67680837 TATTCAAATA
Statistics
Matches: 297, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
94 138 0.46
96 145 0.49
98 14 0.05
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67684809 original size:40 final size:40
Alignment explanation
Indices: 67684764--67684995 Score: 186
Period size: 40 Copynumber: 5.8 Consensus size: 40
67684754 CGAATACACG
* * * * *
67684764 TCACCAGCATGATTGCTCTTCGAGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
67684804 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
67684844 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
67684884 TCACTAGCATGAATACTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
67684924 GTAACTC-GCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
67684965 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCC
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCC
67684996 GGACATCATT
Statistics
Matches: 153, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.02
40 133 0.87
41 17 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:67685377 original size:29 final size:28
Alignment explanation
Indices: 67685308--67685386 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 28
67685298 CTTAATAATC
67685308 AACCACGCACACTTAGTGCCATGTACATTA
1 AACC-CGCACACTTAGTGCCATG-ACATTA
* *
67685338 AACTCGAACACTTAGTGCCATG-CATTTCA
1 AACCCGCACACTTAGTGCCATGACA-TT-A
*
67685367 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67685387 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 2 0.05
28 2 0.05
29 35 0.83
30 3 0.07
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCCATGACATTA
Found at i:67685429 original size:43 final size:43
Alignment explanation
Indices: 67685368--67685470 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
67685358 TGCATTTCAA
*
67685368 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
67685411 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
67685454 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
67685471 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:67686975 original size:47 final size:47
Alignment explanation
Indices: 67686897--67687066 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
67686887 CCCTTCGGGA
* * * * * *
67686897 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67686944 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67686991 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67687038 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
67687067 TATTCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 92 0.83
49 19 0.17
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67698395 original size:29 final size:29
Alignment explanation
Indices: 67698353--67698411 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
67698343 TCGACTATTC
67698353 TTAGGTTCTCCTCAACCTTTGTTCACCAT
1 TTAGGTTCTCCTCAACCTTTGTTCACCAT
* *
67698382 TTAGGTTCTCCTCAACCTTTTTTCGCCAT
1 TTAGGTTCTCCTCAACCTTTGTTCACCAT
67698411 T
1 T
67698412 CATCTAATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.31, G:0.10, T:0.44
Consensus pattern (29 bp):
TTAGGTTCTCCTCAACCTTTGTTCACCAT
Found at i:67701681 original size:45 final size:45
Alignment explanation
Indices: 67701510--67701681 Score: 227
Period size: 45 Copynumber: 3.8 Consensus size: 45
67701500 ATACCAGAAA
* * *
67701510 CGAGTAAGACCATAGCTGAAAGACGTTATAGCATCAAAACTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAATTCTAT
* * * *
67701555 CGAGTTAGACTATAGCTGAAAGACGTTATGTCATCATAATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAATTCTAT
* * * *
67701600 TGAGTAAGACTATAGCTAAAAGACGTTATGGCATCACGATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAATTCTAT
* *
67701645 CGAGGAAGACCATAGCTGAAAGACGATATGGCATCAC
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCAC
67701682 CAATCAAAGA
Statistics
Matches: 110, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 110 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (45 bp):
CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAATTCTAT
Found at i:67701712 original size:90 final size:90
Alignment explanation
Indices: 67701514--67701713 Score: 197
Period size: 90 Copynumber: 2.2 Consensus size: 90
67701504 CAGAAACGAG
* * ** *
67701514 TAAGACCATAGCTGAAAGACGTTATAGCATCAAAACTCTATCGAGTTAGACTATAGCTGAAAGAC
1 TAAGACTAGAGCTGAAAGACGTTATAGCATCAAAACTCTATCGAGGAAGACCATAGCTGAAAGAC
* * * ** *
67701579 GTTATGTCATCATAATTCTATTGAG
66 GATATGGCATCACAATTCTAAAGAA
* * * ** *
67701604 TAAGACTATAGCTAAAAGACGTTATGGCATCACGATTCTATCGAGGAAGACCATAGCTGAAAGAC
1 TAAGACTAGAGCTGAAAGACGTTATAGCATCAAAACTCTATCGAGGAAGACCATAGCTGAAAGAC
67701669 GATATGGCATCACCAA-TC-AAAGAAA
66 GATATGGCATCA-CAATTCTAAAG-AA
* *
67701694 TAAGAGTAGGGCTGAAAGAC
1 TAAGACTAGAGCTGAAAGAC
67701714 ACCATGGCAC
Statistics
Matches: 89, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
89 2 0.02
90 85 0.96
91 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (90 bp):
TAAGACTAGAGCTGAAAGACGTTATAGCATCAAAACTCTATCGAGGAAGACCATAGCTGAAAGAC
GATATGGCATCACAATTCTAAAGAA
Found at i:67712048 original size:17 final size:17
Alignment explanation
Indices: 67712026--67712060 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
67712016 TCAGATTTGT
67712026 GGAATTTAATGCTCCTA
1 GGAATTTAATGCTCCTA
*
67712043 GGAATTTGATGCTCCTA
1 GGAATTTAATGCTCCTA
67712060 G
1 G
67712061 TCTTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (17 bp):
GGAATTTAATGCTCCTA
Found at i:67719115 original size:29 final size:28
Alignment explanation
Indices: 67719079--67719156 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67719069 TCATGAGATT
67719079 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67719109 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67719136 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
67719157 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67719374 original size:174 final size:174
Alignment explanation
Indices: 67719109--67719436 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
67719099 AAATTGTACA
67719109 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
67719174 TGTGCGAACCCAATATATATTTTCTATAAATCATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATCATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
67719239 TTTTGGATAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
67719283 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
67719348 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATCATTTACATGAAGGGTGCGACTTTACCGAGTCAA
67719413 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
67719437 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATCATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:67727259 original size:29 final size:28
Alignment explanation
Indices: 67727223--67727300 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67727213 TCATGAGATT
67727223 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67727253 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67727280 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
67727301 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67727518 original size:174 final size:174
Alignment explanation
Indices: 67727253--67727580 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
67727243 AAATTGTACA
67727253 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
67727318 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
67727383 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
67727427 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
67727492 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
67727557 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
67727581 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Done.