Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 203 of 320
Found at i:67730536 original size:6 final size:6
Alignment explanation
Indices: 67730525--67730562 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
67730515 TTTTACTATT
* *
67730525 TTTTTA TTTTTA TTTTTA TTTTTG TTTCTA -TTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
67730563 CAAATTCCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:67739300 original size:40 final size:40
Alignment explanation
Indices: 67739263--67739448 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
67739253 GCTACTCGTT
* *
67739263 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
67739303 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
67739343 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
67739383 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
67739424 CAAA-GCCTTCGGAACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
67739449 CATCATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:67741260 original size:43 final size:42
Alignment explanation
Indices: 67741166--67741281 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 42
67741156 GAAGTTCGAA
** * **
67741166 CTCGTTGAGTGGTCTGAGTTTGTGATATATGTGGCATCCAAG
1 CTCGTTGAGTGGTCTGAGTTCATAATGGATGTGGCATCCAAG
* *
67741208 CTCGTTGAGTGGTCTGAGTTCATTATGGATGTGAGCATCCGAG
1 CTCGTTGAGTGGTCTGAGTTCATAATGGATGTG-GCATCCAAG
*
67741251 CTCGATGAGTGGTCTGAGTTCATAATGGATG
1 CTCGTTGAGTGGTCTGAGTTCATAATGGATG
67741282 CGATACATGT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 28 0.43
43 37 0.57
ACGTcount: A:0.20, C:0.15, G:0.32, T:0.34
Consensus pattern (42 bp):
CTCGTTGAGTGGTCTGAGTTCATAATGGATGTGGCATCCAAG
Found at i:67744931 original size:15 final size:15
Alignment explanation
Indices: 67744906--67744963 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
67744896 GAGATGACAT
*
67744906 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
67744921 GAAGTCCAAGACAAA
1 GAAATCCAAGATAAA
* **
67744936 GAAATACTGGATAAA
1 GAAATCCAAGATAAA
67744951 GAAATCCAAGATA
1 GAAATCCAAGATA
67744964 CAATATCATA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:67748867 original size:45 final size:45
Alignment explanation
Indices: 67748761--67748880 Score: 125
Period size: 45 Copynumber: 2.6 Consensus size: 45
67748751 CGTCCATTAT
*
67748761 GAACTCGGACCAACTCAACAAGCTCGGATGCCTCATACATATACCAC
1 GAACTCGGACCAACTCAACAAGCTCGGAT--CTCATACAAATACCAC
* * * * *
67748808 GAACTTGGACCAACTCAACAAGTTTGGAT-TTATCACAAATATCAC
1 GAACTCGGACCAACTCAACAAGCTCGGATCTCAT-ACAAATACCAC
* * *
67748853 GAACTCAGACCAACTCATCAACCTCGGA
1 GAACTCGGACCAACTCAACAAGCTCGGA
67748881 ATTCTTAATT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
44 3 0.05
45 31 0.52
47 26 0.43
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.20
Consensus pattern (45 bp):
GAACTCGGACCAACTCAACAAGCTCGGATCTCATACAAATACCAC
Found at i:67749103 original size:14 final size:16
Alignment explanation
Indices: 67749071--67749109 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
67749061 ATTTACATAA
*
67749071 CATATATCACATATTT
1 CATATATCACATATGT
67749087 CATATATCAC-T-TGT
1 CATATATCACATATGT
67749101 CATATATCA
1 CATATATCA
67749110 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:67752426 original size:89 final size:88
Alignment explanation
Indices: 67752248--67752426 Score: 223
Period size: 89 Copynumber: 2.0 Consensus size: 88
67752238 CATCGTGGCG
* * * * * * *
67752248 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAGATTGAAGCCATAAATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAATTGCAGTAGAGCAGATTGAAGACACAAATCTTATCTCCATGAAGTTG
*
67752313 CAGTAGAGCAAATTAAAACTACA
66 CAGTAGAGCAAATTAAAACCACA
* * *
67752336 AATCTTATCTCCCTGAAATTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCTCTATGACGTT
1 AATCTTATCTCCCTGAAATTGCAGTAGAGCAGATTGAAGACA-CAAATCTTATCTCCATGAAGTT
* * *
67752401 GTAGTAGAGCAGATTAAAGCCACA
65 GCAGTAGAGCAAATTAAAACCACA
67752425 AA
1 AA
67752427 GCTTCTCCCT
Statistics
Matches: 76, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
88 36 0.47
89 40 0.53
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAATTGCAGTAGAGCAGATTGAAGACACAAATCTTATCTCCATGAAGTTG
CAGTAGAGCAAATTAAAACCACA
Found at i:67752504 original size:45 final size:44
Alignment explanation
Indices: 67752248--67752512 Score: 255
Period size: 44 Copynumber: 6.0 Consensus size: 44
67752238 CATCGTGGCG
* * * * * *
67752248 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAGATTGAAGCCATA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
* *
67752292 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAACTACA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
* * *
67752336 AATCTTATCTCCCTGAAATTGCAGTAGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTA-CA
** * * *
67752381 AATCTTATCTCTATGACGTTGTAGTAGAGCAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
* * * * * *
67752425 AAGC-T-TCTCCCTAAAGTAGCAGTGGAGTAAATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
* ** * *
67752467 AATCTTATTTCCCTGAAAGTTGTTGTGGAACAGATTAAAGCTACA
1 AATCTTATCTCCCTG-AAGTTGCAGTAGAGCAGATTAAAGCTACA
67752512 A
1 A
67752513 GTTACAAATC
Statistics
Matches: 176, Mismatches: 41, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
42 30 0.17
43 2 0.01
44 84 0.48
45 60 0.34
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
Found at i:67752560 original size:51 final size:52
Alignment explanation
Indices: 67752459--67752576 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 52
67752449 GAGTAAATTA
** *** *
67752459 AAGCTACAAATCTTATTTCCCTGAAAGTTGTTGTGGAACAGATTAAAGCTAC
1 AAGCTACAAATCTTAAATCCCTGAAAGTTGCAATGGAACAGACTAAAGCTAC
* * *
67752511 AAGTTACAAATCTTAAATCCCTG-AAGTTGCAATGGAATAGACTAGAGCTAC
1 AAGCTACAAATCTTAAATCCCTGAAAGTTGCAATGGAACAGACTAAAGCTAC
67752562 AAGCTACAAATCTTA
1 AAGCTACAAATCTTA
67752577 TCTCCTTGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
51 36 0.64
52 20 0.36
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (52 bp):
AAGCTACAAATCTTAAATCCCTGAAAGTTGCAATGGAACAGACTAAAGCTAC
Found at i:67753121 original size:3 final size:3
Alignment explanation
Indices: 67753113--67753214 Score: 91
Period size: 3 Copynumber: 34.7 Consensus size: 3
67753103 ATTACACATC
* * * *
67753113 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATG GTA ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
67753161 AGT ATA ACT ATT GTT GTT ATT ATT A-A ATT GTT ATT -TT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
67753207 ATT ATT AT
1 ATT ATT AT
67753215 AGTGTATTAT
Statistics
Matches: 79, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
2 3 0.04
3 76 0.96
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:67753193 original size:14 final size:15
Alignment explanation
Indices: 67753174--67753215 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
67753164 ATAACTATTG
67753174 TTGTTATTATTA-AA
1 TTGTTATTATTATAA
*
67753188 TTGTTATT-TTATTA
1 TTGTTATTATTATAA
*
67753202 TTATTATTATTATA
1 TTGTTATTATTATA
67753216 GTGTATTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 3 0.13
14 16 0.70
15 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (15 bp):
TTGTTATTATTATAA
Found at i:67754475 original size:20 final size:20
Alignment explanation
Indices: 67754450--67754504 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
67754440 AAGCTTATGC
67754450 TAAGTAAATGGAATGAAAAG
1 TAAGTAAATGGAATGAAAAG
*
67754470 TAAGTAAAT-GAAGTGGAAAG
1 TAAGTAAATGGAA-TGAAAAG
67754490 TAAGTAAATGGAATG
1 TAAGTAAATGGAATG
67754505 GTTCATCGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 3 0.09
20 26 0.81
21 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.27, T:0.22
Consensus pattern (20 bp):
TAAGTAAATGGAATGAAAAG
Found at i:67759126 original size:32 final size:29
Alignment explanation
Indices: 67759090--67759189 Score: 85
Period size: 32 Copynumber: 3.2 Consensus size: 29
67759080 AAAAATTTGC
67759090 AAAAATATAAAATTTAGTAAATAAATATTTA
1 AAAAATATAAAATTTA-TAAA-AAATATTTA
* *
67759121 GAAAAACT-TAAAATTTATTTAAAAATATATA
1 -AAAAA-TATAAAATTTA-TAAAAAATATTTA
* *
67759152 AAAAATATTAAAAAGTTATAAAAAAATCTTTA
1 AAAAATA-T-AAAATTTAT-AAAAAATATTTA
67759184 AAAAAT
1 AAAAAT
67759190 TTTCTTGTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
29 1 0.02
30 5 0.09
31 10 0.18
32 39 0.70
33 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAAATATAAAATTTATAAAAAATATTTA
Found at i:67759160 original size:21 final size:22
Alignment explanation
Indices: 67759136--67759187 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
67759126 ACTTAAAATT
67759136 TATTTAAAAA--TATATAAAAAA
1 TATTTAAAAAGTTATA-AAAAAA
67759157 TA-TTAAAAAGTTATAAAAAAA
1 TATTTAAAAAGTTATAAAAAAA
*
67759178 TCTTTAAAAA
1 TATTTAAAAA
67759188 ATTTTCTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 7 0.26
21 9 0.33
22 11 0.41
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
TATTTAAAAAGTTATAAAAAAA
Found at i:67759162 original size:20 final size:20
Alignment explanation
Indices: 67759139--67759176 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67759129 TAAAATTTAT
67759139 TTAAAAA-TATATAAAAAATA
1 TTAAAAAGT-TATAAAAAATA
67759159 TTAAAAAGTTATAAAAAA
1 TTAAAAAGTTATAAAAAA
67759177 ATCTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (20 bp):
TTAAAAAGTTATAAAAAATA
Found at i:67759163 original size:31 final size:33
Alignment explanation
Indices: 67759090--67759164 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 33
67759080 AAAAATTTGC
*
67759090 AAAAATA-TAAAATTTAGTAAATAAATATTTAG
1 AAAAATATTAAAATTTAGTAAATAAATATATAG
* * *
67759122 AAAAA-CTTAAAATTTATTTAA-AAATATATA-
1 AAAAATATTAAAATTTAGTAAATAAATATATAG
67759152 AAAAATATTAAAA
1 AAAAATATTAAAA
67759165 AGTTATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 5 0.14
31 14 0.39
32 17 0.47
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (33 bp):
AAAAATATTAAAATTTAGTAAATAAATATATAG
Found at i:67759973 original size:22 final size:22
Alignment explanation
Indices: 67759935--67759978 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
67759925 TAGTAAAAAA
* *
67759935 ATTTTAGAAAATTTTAATATTT
1 ATTTTAGAAAATATTAAAATTT
67759957 ATTTTA-AAATATATTAAAATTT
1 ATTTTAGAAA-ATATTAAAATTT
67759979 GTTAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTTAGAAAATATTAAAATTT
Found at i:67760036 original size:31 final size:30
Alignment explanation
Indices: 67759996--67760055 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
67759986 TTTTATTTTT
* *
67759996 AAAATTATTATAATTTAACAATTTTTTTAAA
1 AAAAGTATTATAATTTAA-AATATTTTTAAA
**
67760027 AAAAGTATTATTTTTTAAAATATTTTTAA
1 AAAAGTATTATAATTTAAAATATTTTTAA
67760056 TAATTCTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (30 bp):
AAAAGTATTATAATTTAAAATATTTTTAAA
Found at i:67760107 original size:20 final size:22
Alignment explanation
Indices: 67760084--67760130 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
67760074 TTTACAATTC
67760084 TAAAGAATTTTTA-AATTTTT-
1 TAAAGAATTTTTACAATTTTTA
*
67760104 TAAATAATTTTTACTAATTTTTA
1 TAAAGAATTTTTAC-AATTTTTA
67760127 TAAA
1 TAAA
67760131 AAAATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 12 0.52
22 7 0.30
23 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
TAAAGAATTTTTACAATTTTTA
Found at i:67761152 original size:37 final size:37
Alignment explanation
Indices: 67761102--67761174 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
67761092 CTCATGTTCA
*
67761102 TTGAGTATGTTAATATATGAATCCTTAACAATGTAGC
1 TTGAGTATGTTAATAAATGAATCCTTAACAATGTAGC
67761139 TTGAGTATGTTAATAAATGAATCCTTAACAATGTAG
1 TTGAGTATGTTAATAAATGAATCCTTAACAATGTAG
67761175 TAAGCACCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (37 bp):
TTGAGTATGTTAATAAATGAATCCTTAACAATGTAGC
Found at i:67762109 original size:33 final size:33
Alignment explanation
Indices: 67762067--67762134 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
67762057 CCCGACCCGA
*
67762067 TTTATCGGATCCAAATATAAAATGTCACAATAC
1 TTTACCGGATCCAAATATAAAATGTCACAATAC
** *
67762100 TTTACCGGATCTGAATATAAGATGTCACAATAC
1 TTTACCGGATCCAAATATAAAATGTCACAATAC
67762133 TT
1 TT
67762135 ACATACTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (33 bp):
TTTACCGGATCCAAATATAAAATGTCACAATAC
Found at i:67763588 original size:26 final size:26
Alignment explanation
Indices: 67763403--67763590 Score: 98
Period size: 26 Copynumber: 7.6 Consensus size: 26
67763393 TATCCGAAGC
*
67763403 TCCTGTTACATGGCTCTTTGTGAGCT
1 TCCTGTTATATGGCTCTTTGTGAGCT
*
67763429 T-CTCG--ATA-GGCTCTTCGTGAGCT
1 TCCT-GTTATATGGCTCTTTGTGAGCT
** * *
67763452 TCCTGATTA-AAAGTTCTTTGTGAACT
1 TCCTG-TTATATGGCTCTTTGTGAGCT
* * * *
67763478 TTCTGAT-TATGGCTC-TTATGAGTT
1 TCCTGTTATATGGCTCTTTGTGAGCT
* ** *
67763502 TCCTGTTATATAGC-C-CAGATAAGCT
1 TCCTGTTATATGGCTCTTTG-TGAGCT
*
67763527 TTCTG--ATA-GGCTCTTTGTGAGCT
1 TCCTGTTATATGGCTCTTTGTGAGCT
67763550 T-CTAGATTA-ATGGCTCTTTGTGAGCT
1 TCCT-G-TTATATGGCTCTTTGTGAGCT
67763576 TCCTGTTATATGGCT
1 TCCTGTTATATGGCT
67763591 TGAGAGAAGA
Statistics
Matches: 117, Mismatches: 27, Indels: 36
0.65 0.15 0.20
Matches are distributed among these distances:
22 4 0.03
23 27 0.23
24 17 0.15
25 25 0.21
26 42 0.36
27 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.41
Consensus pattern (26 bp):
TCCTGTTATATGGCTCTTTGTGAGCT
Found at i:67765894 original size:23 final size:23
Alignment explanation
Indices: 67765868--67765916 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
67765858 TATTCAACCT
67765868 ACTGTTAATATATTTTCATATGA
1 ACTGTTAATATATTTTCATATGA
67765891 ACTGTTAATATATTTTCATATGA
1 ACTGTTAATATATTTTCATATGA
67765914 ACT
1 ACT
67765917 TTATAAATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (23 bp):
ACTGTTAATATATTTTCATATGA
Found at i:67772566 original size:48 final size:47
Alignment explanation
Indices: 67772455--67772677 Score: 220
Period size: 46 Copynumber: 4.7 Consensus size: 47
67772445 TGATATGTGT
* * * *
67772455 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATAT-TAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAA-A
* *
67772501 GCCAATGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AA
* * * * ** *
67772549 GCTAGTGTAAGACATGTCTAGGACATACATCAGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAA
*
67772595 GCTAGTGTAAGACATGTCTGGGACATGCATC-GACCTCGACATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CCTCGAGATATA-AA
* * *
67772643 ACTAGTGTACGACCTGTCTGGGACATGGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGC
67772678 TTGTTGTGTG
Statistics
Matches: 143, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.47
47 5 0.03
48 62 0.43
49 7 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAA
Found at i:67772607 original size:94 final size:95
Alignment explanation
Indices: 67772506--67772677 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 95
67772496 TAAGAGCCAA
* *
67772506 TGTAAGACATGTCTGGGACATGCATC-AGCCTCGAGATATACAAGCTAGTGTAAGACATGTCTAG
1 TGTAAGACATGTCTGGGACATGCATCGA-CCTCGACATATACAAACTAGTGTAAGACATGTCTAG
67772570 GACAT-ACATCAGCATTGAGACGAGAGCTAG
65 GACATGACATCAGCATTGAGACGAGAGCTAG
* * *
67772600 TGTAAGACATGTCTGGGACATGCATCGACCTCGACATATACAAACTAGTGTACGACCTGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCGACCTCGACATATACAAACTAGTGTAAGACATGTCTAGG
*
67772665 ACATGGCATCAGC
66 ACATGACATCAGC
67772678 TTGTTGTGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
94 62 0.89
95 8 0.11
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (95 bp):
TGTAAGACATGTCTGGGACATGCATCGACCTCGACATATACAAACTAGTGTAAGACATGTCTAGG
ACATGACATCAGCATTGAGACGAGAGCTAG
Found at i:67772817 original size:49 final size:49
Alignment explanation
Indices: 67772693--67772819 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 49
67772683 GTGTGTCAGG
* * * *
67772693 GTAAGACCTGTCTAGGACATGGCATCGACACCGATAGATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAAGCCACT
* *** * *
67772742 ATAAGACCTGTCTGGGACACAACATCGGC-CTCAATATG-TGAAAGTCACT
1 GTAAGACCTGTCTGGGACATGGCATCGACAC-CAATA-GATGAAAGCCACT
67772791 GTAAGACCTGTCTGGGACATGGCATCGAC
1 GTAAGACCTGTCTGGGACATGGCATCGAC
67772820 TTTGATGTGT
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
48 1 0.02
49 59 0.97
50 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAAGCCACT
Found at i:67780571 original size:46 final size:46
Alignment explanation
Indices: 67780448--67780571 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
67780438 TGATATGTGT
* * * *
67780448 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATATTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAACAGACTGAGA
* * *
67780494 GCGAGTGTAAGACATGTCTAGGACATGCATCGGCAATGAGACT-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAA-CAGACTGAGA
*
67780540 GCTAGTGTAAGACATGTTTGGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG
67780572 ACCTTGAGAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 64 0.96
47 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAACAGACTGAGA
Found at i:67780580 original size:46 final size:45
Alignment explanation
Indices: 67780448--67780763 Score: 154
Period size: 46 Copynumber: 6.8 Consensus size: 45
67780438 TGATATGTGT
** * *
67780448 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCACATATTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CCTGAGAAT-AGA
* * * * *
67780494 GCGAGTGTAAGACATGTCTAGGACATGCATCGGCAATGAGACTAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGAC-CTGAGAATAGA
* *
67780540 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACC-TGAGA-ATA-GA
* ** ** * * **
67780588 GCTAGTGTAAGACTTGTCTGTAACATGGCATCG-GGT-TG-TTATT
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTGAGAATAGA
* * * *
67780631 GTTAGGGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC-CTGAGA-AT-AGA
* * * * * * *
67780680 GCCAGTGTAAGACCTGTCTAGGACACGACATCGGCCTCGATATATGGA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGACCT-GAGA-ATAGA
* * *
67780728 ACTCAGTGTAAGACCTGTTTGGGACATGACATCGAC
1 GCT-AGTGTAAGACATGTCTGGGACATG-CATCGAC
67780764 TTTGATGTGT
Statistics
Matches: 204, Mismatches: 51, Indels: 27
0.72 0.18 0.10
Matches are distributed among these distances:
43 28 0.14
44 2 0.01
45 1 0.00
46 69 0.34
47 6 0.03
48 30 0.15
49 68 0.33
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTGAGAATAGA
Found at i:67780712 original size:49 final size:49
Alignment explanation
Indices: 67780637--67780763 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
67780627 TATTGTTAGG
* *
67780637 GTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAGAGC-CAGT
1 GTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAGATG-GAACTCAGT
* * * *
67780686 GTAAGACCTGTCTAGGACACGACATCGGCCTCGATATATGGAACTCAGT
1 GTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGGAACTCAGT
*
67780735 GTAAGACCTGTTTGGGACATGACATCGAC
1 GTAAGACCTGTCTGGGACATGACATCGAC
67780764 TTTGATGTGT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
48 5 0.08
49 61 0.92
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGGAACTCAGT
Found at i:67782172 original size:21 final size:21
Alignment explanation
Indices: 67782127--67782172 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
67782117 CCACACGGGT
* * *
67782127 GTGTCGCCTTTCCACACAGGT
1 GTGTCACCTTTCCACACAAGC
*
67782148 GTGTCACCTTTCCATACAAGC
1 GTGTCACCTTTCCACACAAGC
67782169 GTGT
1 GTGT
67782173 GCCCCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.17, C:0.30, G:0.22, T:0.30
Consensus pattern (21 bp):
GTGTCACCTTTCCACACAAGC
Found at i:67782173 original size:23 final size:21
Alignment explanation
Indices: 67782117--67782161 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
67782107 GTTAAAAGAG
* *
67782117 CCACACGGGTGTGTCGCCTTT
1 CCACACAGGTGTGTCACCTTT
67782138 CCACACAGGTGTGTCACCTTT
1 CCACACAGGTGTGTCACCTTT
67782159 CCA
1 CCA
67782162 TACAAGCGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.36, G:0.22, T:0.27
Consensus pattern (21 bp):
CCACACAGGTGTGTCACCTTT
Found at i:67784209 original size:15 final size:15
Alignment explanation
Indices: 67784177--67784205 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
67784167 ATTTTCAATG
67784177 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
67784192 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
67784206 ATTTTTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:67785026 original size:15 final size:15
Alignment explanation
Indices: 67785006--67785035 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67784996 GTGAAAATAT
67785006 ATTTGAATAAGTTTA
1 ATTTGAATAAGTTTA
*
67785021 ATTTGAATATGTTTA
1 ATTTGAATAAGTTTA
67785036 GATCAAGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
ATTTGAATAAGTTTA
Found at i:67789851 original size:25 final size:26
Alignment explanation
Indices: 67789822--67789879 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
67789812 TTTGATACTT
*
67789822 ATATTAATAGT-ATTTTATTAAT-TTA
1 ATATTAA-AGTGATTATATTAATATTA
*
67789847 ATATTAAAGTGATTATCTTAATATTA
1 ATATTAAAGTGATTATATTAATATTA
67789873 A-ATTAAA
1 ATATTAAA
67789880 TTTAATGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.10
25 22 0.76
26 4 0.14
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (26 bp):
ATATTAAAGTGATTATATTAATATTA
Found at i:67789872 original size:31 final size:29
Alignment explanation
Indices: 67789837--67789894 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
67789827 AATAGTATTT
*
67789837 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
67789868 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
67789895 GTAGATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:67792255 original size:16 final size:16
Alignment explanation
Indices: 67792234--67792271 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
67792224 ATTGTCCTTT
67792234 ATGAATCATATGCATC
1 ATGAATCATATGCATC
67792250 ATGAATCATATGCATC
1 ATGAATCATATGCATC
67792266 ATGAAT
1 ATGAAT
67792272 ACTTTTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (16 bp):
ATGAATCATATGCATC
Found at i:67792432 original size:20 final size:20
Alignment explanation
Indices: 67792407--67792455 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
67792397 CGTGACTTGG
* *
67792407 TATTGATACTAATTTAAAAT
1 TATTGATACTAATCTAAAAA
**
67792427 TATTGATACTCGTCTAAAAA
1 TATTGATACTAATCTAAAAA
67792447 TATTGATAC
1 TATTGATAC
67792456 GAGAGTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (20 bp):
TATTGATACTAATCTAAAAA
Found at i:67792620 original size:22 final size:20
Alignment explanation
Indices: 67792595--67792640 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
67792585 TTTTCAACAC
*
67792595 CATTGCATCAAGATTTCTTCAA
1 CATTGCATCAA-AATT-TTCAA
*
67792617 CATTGCTTCAAAATTTTCAA
1 CATTGCATCAAAATTTTCAA
67792637 CATT
1 CATT
67792641 TCAACATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 3 0.14
22 10 0.45
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (20 bp):
CATTGCATCAAAATTTTCAA
Found at i:67793262 original size:13 final size:14
Alignment explanation
Indices: 67793244--67793276 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
67793234 TATGTTTCCG
67793244 TTATTTTAA-TTTA
1 TTATTTTAACTTTA
67793257 TTATTTTAACCTTTA
1 TTATTTTAA-CTTTA
67793272 TTATT
1 TTATT
67793277 ATTTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
15 9 0.50
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTTAACTTTA
Found at i:67793290 original size:15 final size:15
Alignment explanation
Indices: 67793244--67793291 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 15
67793234 TATGTTTCCG
67793244 TTATTTTAA--TTTA
1 TTATTTTAATTTTTA
67793257 TTATTTTAACCTTTATTA
1 TTATTTTAA--TTT-TTA
67793275 TTATTTTAATTTTTA
1 TTATTTTAATTTTTA
67793290 TT
1 TT
67793292 TAATATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 9 0.30
15 5 0.17
16 3 0.10
17 1 0.03
18 12 0.40
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTTTAATTTTTA
Found at i:67795458 original size:20 final size:19
Alignment explanation
Indices: 67795435--67795474 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
67795425 TAAAATGACC
67795435 TCAATCAAGTTAGAATT-TTT
1 TCAATCAA-TTA-AATTGTTT
67795455 TCAATCAATTAAATTGTTT
1 TCAATCAATTAAATTGTTT
67795474 T
1 T
67795475 TAAAACAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (19 bp):
TCAATCAATTAAATTGTTT
Found at i:67799870 original size:62 final size:59
Alignment explanation
Indices: 67799784--67799917 Score: 162
Period size: 62 Copynumber: 2.2 Consensus size: 59
67799774 TCAAAAAATA
* * * *
67799784 ATATTATTTTAAT-AGATTTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTAAATCTAATATCTATC-T-TA-ATAAATATT
* * *
67799845 CTATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATCTATCTTAATAAGTATT
1 ATATTAATTTAATAAGATTTAATATTAAATTAAATCTAATATCTATCTTAATAAATATT
*
67799904 ATATTAATGTAATA
1 ATATTAATTTAATA
67799918 TTAAAGTGAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
59 20 0.32
60 2 0.03
61 12 0.19
62 29 0.46
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.49
Consensus pattern (59 bp):
ATATTAATTTAATAAGATTTAATATTAAATTAAATCTAATATCTATCTTAATAAATATT
Found at i:67800056 original size:26 final size:24
Alignment explanation
Indices: 67800026--67800076 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
67800016 AAGTTGTAGG
67800026 AGAAAATTCTCTAAAGAAATTATTTC
1 AGAAAATT-TCTAAAGAAATT-TTTC
* *
67800052 AGAAAATTTCTAGAGATATTTTTC
1 AGAAAATTTCTAAAGAAATTTTTC
67800076 A
1 A
67800077 TATTTATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 10 0.43
26 8 0.35
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (24 bp):
AGAAAATTTCTAAAGAAATTTTTC
Found at i:67802007 original size:17 final size:16
Alignment explanation
Indices: 67801969--67802021 Score: 67
Period size: 15 Copynumber: 3.4 Consensus size: 16
67801959 ATCAAAATTT
67801969 TATATAT-ATAATTACA
1 TATATATCA-AATTACA
67801985 TA-ATATCAAATTACA
1 TATATATCAAATTACA
67802000 TATTATATCAAATTA-A
1 TA-TATATCAAATTACA
67802016 TATATA
1 TATATA
67802022 ATTTTAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
15 17 0.50
16 6 0.18
17 11 0.32
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.42
Consensus pattern (16 bp):
TATATATCAAATTACA
Found at i:67803868 original size:10 final size:10
Alignment explanation
Indices: 67803853--67804007 Score: 65
Period size: 10 Copynumber: 15.6 Consensus size: 10
67803843 CAAATTTTAA
67803853 AAAAAATTAT
1 AAAAAATTAT
67803863 AAAAAATATAT
1 AAAAAAT-TAT
*
67803874 AAAAACA-AAT
1 AAAAA-ATTAT
67803884 AAATAAAGCTTAT
1 AAA-AAA--TTAT
**
67803897 -AAAAATCCT
1 AAAAAATTAT
67803906 -AAAAATTAT
1 AAAAAATTAT
*
67803915 AAAATATT-T
1 AAAAAATTAT
67803924 -AAAAATTAT
1 AAAAAATTAT
* *
67803933 ATAAACTTAT
1 AAAAAATTAT
*
67803943 -AAAAAGTA-
1 AAAAAATTAT
* *
67803951 GAAAAATTAGA
1 AAAAAATTA-T
*
67803962 AAAAAATCAT
1 AAAAAATTAT
*
67803972 AAAAACTTAT
1 AAAAAATTAT
*
67803982 -AAATATTAT
1 AAAAAATTAT
* *
67803991 CAAAACTTAT
1 AAAAAATTAT
67804001 AATAAAA
1 AA-AAAA
67804008 AATAAAAATA
Statistics
Matches: 106, Mismatches: 25, Indels: 27
0.67 0.16 0.17
Matches are distributed among these distances:
8 6 0.06
9 30 0.28
10 42 0.40
11 23 0.22
12 3 0.03
13 2 0.02
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:67803917 original size:9 final size:9
Alignment explanation
Indices: 67803893--67804016 Score: 79
Period size: 9 Copynumber: 13.1 Consensus size: 9
67803883 TAAATAAAGC
67803893 TTATAAAAA
1 TTATAAAAA
**
67803902 TCCTAAAAA
1 TTATAAAAA
67803911 TTATAAAATA
1 TTATAAAA-A
67803921 TT-TAAAAA
1 TTATAAAAA
*
67803929 TTATATAAAC
1 TTATA-AAAA
67803939 TTATAAAAA
1 TTATAAAAA
* *
67803948 GTAGAAAAA
1 TTATAAAAA
*
67803957 TTAGAAAAAAA
1 TT--ATAAAAA
*
67803968 TCATAAAAA
1 TTATAAAAA
*
67803977 CTTATAAATA
1 -TTATAAAAA
*
67803987 TTATCAAAAC
1 TTAT-AAAAA
67803997 TTATAATAAA
1 TTATAA-AAA
**
67804007 AAATAAAAA
1 TTATAAAAA
67804016 T
1 T
67804017 ATTTAAATTA
Statistics
Matches: 87, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
8 3 0.03
9 46 0.53
10 31 0.36
11 7 0.08
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (9 bp):
TTATAAAAA
Found at i:67803945 original size:19 final size:18
Alignment explanation
Indices: 67803905--67804002 Score: 72
Period size: 19 Copynumber: 5.2 Consensus size: 18
67803895 ATAAAAATCC
*
67803905 TAAAAATTATAAAA-TATT
1 TAAAAATTATAAAACT-TA
67803923 TAAAAATTATATAAACTTA
1 TAAAAATTATA-AAACTTA
* * *
67803942 TAAAAAGTAGAAAAATTAGA
1 TAAAAATTATAAAACTT--A
* *
67803962 AAAAAATCATAAAAACTTA
1 TAAAAATTAT-AAAACTTA
*
67803981 TAAATATTATCAAAACTTA
1 TAAAAATTAT-AAAACTTA
67804000 TAA
1 TAA
67804003 TAAAAAATAA
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
18 16 0.26
19 32 0.52
20 8 0.13
21 6 0.10
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (18 bp):
TAAAAATTATAAAACTTA
Found at i:67804609 original size:3 final size:3
Alignment explanation
Indices: 67804601--67804627 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
67804591 AAGGGCTTTA
67804601 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
67804628 TGGATTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:67805573 original size:15 final size:14
Alignment explanation
Indices: 67805553--67805581 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
67805543 TAAATTAAAG
67805553 TTTTTTTTAAGGGA
1 TTTTTTTTAAGGGA
67805567 TTTTTTTTAAGGGA
1 TTTTTTTTAAGGGA
67805581 T
1 T
67805582 CCAATAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (14 bp):
TTTTTTTTAAGGGA
Found at i:67813924 original size:170 final size:170
Alignment explanation
Indices: 67813642--67813981 Score: 617
Period size: 170 Copynumber: 2.0 Consensus size: 170
67813632 TCCATTACTA
*
67813642 TACAAAAACACATTTTTAACTGTTAGAAATCATCACACTATCGTATTAACACTATATGGCATGTA
1 TACAAAAACACATTTTTAACTGTCAGAAATCATCACACTATCGTATTAACACTATATGGCATGTA
67813707 TAGCTAGACTCATATACACTACGTTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAA
66 TAGCTAGACTCATATACACTACGTTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAA
* *
67813772 AATGTAACACCCCTAACCTGAATCCGATTGCCGAATTAAG
131 AATGTAACACCCCTAACCCGAATCCCATTGCCGAATTAAG
67813812 TACAAAAACACATTTTTAACTGTCAGAAATCATCACACTATCGTATTAACACTATATGGCATGTA
1 TACAAAAACACATTTTTAACTGTCAGAAATCATCACACTATCGTATTAACACTATATGGCATGTA
* * *
67813877 TAGCTAGACTCATATGCGCTACGTTAGTCCTAGAATCGACTAAACCGTAGCTGTGATACCAATAA
66 TAGCTAGACTCATATACACTACGTTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAA
*
67813942 AATGTAACACCCCTAACCCGAATCCCATTGCCGGATTAAG
131 AATGTAACACCCCTAACCCGAATCCCATTGCCGAATTAAG
67813982 GCTAAGAGGT
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
170 163 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (170 bp):
TACAAAAACACATTTTTAACTGTCAGAAATCATCACACTATCGTATTAACACTATATGGCATGTA
TAGCTAGACTCATATACACTACGTTAGTCCTAGAATCGACTAAACCGTAGCTCTGATACCAATAA
AATGTAACACCCCTAACCCGAATCCCATTGCCGAATTAAG
Found at i:67815006 original size:39 final size:39
Alignment explanation
Indices: 67814963--67815103 Score: 144
Period size: 39 Copynumber: 3.6 Consensus size: 39
67814953 ACATATTTCT
* *
67814963 AGCACGTAGCCTGCGGACCTTAAGTCCAATTATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCAATTATAATTCC
** * **
67815002 AGCACATAGCCTGTAGACCTTAAGT-CTGTATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCAAT-TATAATTCC
* * *
67815041 AGCACATAGCTTGCGAACCCT-AGTCCGGA-TATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCC-AATTATAATTCC
*
67815079 AGCACGTAGCCTGCGGACCCTAAGT
1 AGCACATAGCCTGCGGACCCTAAGT
67815104 TCTGATAAAC
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
38 32 0.39
39 51 0.61
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCAATTATAATTCC
Found at i:67816940 original size:14 final size:14
Alignment explanation
Indices: 67816921--67816950 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
67816911 TCAATTTATG
67816921 AAATAAAAAAAATT
1 AAATAAAAAAAATT
67816935 AAATAAAAAAAATT
1 AAATAAAAAAAATT
67816949 AA
1 AA
67816951 GTTAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAAAAATT
Found at i:67826116 original size:46 final size:46
Alignment explanation
Indices: 67826066--67826238 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
67826056 TGGTTGAGCA
* *
67826066 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
67826112 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
67826159 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
67826205 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67826239 GGGGCAGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67826222 original size:93 final size:93
Alignment explanation
Indices: 67826063--67826233 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67826053 GGATGGTTGA
* * *
67826063 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67826128 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67826156 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
67826221 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
67826234 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67826500 original size:19 final size:20
Alignment explanation
Indices: 67826463--67826500 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67826453 ATAAGGTGGT
67826463 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67826483 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67826501 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67833678 original size:46 final size:46
Alignment explanation
Indices: 67833628--67833753 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
67833618 TGGTTGAGCA
*
67833628 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67833674 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67833720 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67833754 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67834015 original size:19 final size:20
Alignment explanation
Indices: 67833978--67834015 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67833968 ATAAGGTGGT
67833978 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67833998 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67834016 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67838789 original size:29 final size:28
Alignment explanation
Indices: 67838754--67838809 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
67838744 GAGTTATACC
67838754 GATTTGGCTTCGGGCCATGAATATCAGTT
1 GATTTGGCTTCGGGCCATG-ATATCAGTT
*
67838783 GATTTGGCTTTGGGCCATGATATCAGT
1 GATTTGGCTTCGGGCCATGATATCAGT
67838810 ATTTCAGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.36
Consensus pattern (28 bp):
GATTTGGCTTCGGGCCATGATATCAGTT
Found at i:67842176 original size:68 final size:71
Alignment explanation
Indices: 67842080--67842214 Score: 177
Period size: 72 Copynumber: 1.9 Consensus size: 71
67842070 TTTAATAGAT
* * *
67842080 TTAATATTACATTTAATTTAATAATTATC-CTA-CT-AGTATTATATTAATTTAATATTAAAGTG
1 TTAATATTAAATTTAATTTAATAATTATCTCTAGATAAATATTATATTAATTTAATATTAAAGTG
67842142 AGTATC
66 AGTATC
* ** *
67842148 TTAATATTAAATTTAATTTCATGTTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
1 TTAATATTAAATTTAATTTAATAATTATC-TCTAGATAAATATTATATTAATTTAATATTAAAGT
67842213 GA
65 GA
67842215 TTAAGTTTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
68 25 0.45
70 2 0.04
71 1 0.02
72 28 0.50
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (71 bp):
TTAATATTAAATTTAATTTAATAATTATCTCTAGATAAATATTATATTAATTTAATATTAAAGTG
AGTATC
Found at i:67845581 original size:5 final size:5
Alignment explanation
Indices: 67845571--67845601 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
67845561 TGTATGTAAG
67845571 TATTT TATTT TATTT TATTT TATTT T-TTT TA
1 TATTT TATTT TATTT TATTT TATTT TATTT TA
67845602 AGAACAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:67863479 original size:20 final size:20
Alignment explanation
Indices: 67863454--67863499 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
67863444 ATTGGGCCTT
67863454 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
67863474 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
67863493 GCCCATA
1 GCCCATA
67863500 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:67877717 original size:105 final size:105
Alignment explanation
Indices: 67877535--67877723 Score: 335
Period size: 105 Copynumber: 1.8 Consensus size: 105
67877525 ATGTTAATAT
67877535 ATGTAATTACATCTCTCGTTCCAAGTTTCATTTTTCGGAGTATTATTGAAGTTTGTATTTCTTCC
1 ATGTAATTACATCTCTCGTTCCAAGTTTCATTTTTCGGAGTATTATTGAAGTTTGTATTTCTTCC
67877600 ACTCTAGCGTTTCTAGAAGTTCTGGATTGAAAATTTGAGA
66 ACTCTAGCGTTTCTAGAAGTTCTGGATTGAAAATTTGAGA
*
67877640 ATGTAATTACATCTCTCGTTCCAAGTTTCATTTGTT-GGAGTATTATTTAAGTTTGTATTTCTTC
1 ATGTAATTACATCTCTCGTTCCAAGTTTCATTT-TTCGGAGTATTATTGAAGTTTGTATTTCTTC
* *
67877704 CACTCTAGTGTTTCTGGAAG
65 CACTCTAGCGTTTCTAGAAG
67877724 ATATAAAACT
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
105 78 0.98
106 2 0.03
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.44
Consensus pattern (105 bp):
ATGTAATTACATCTCTCGTTCCAAGTTTCATTTTTCGGAGTATTATTGAAGTTTGTATTTCTTCC
ACTCTAGCGTTTCTAGAAGTTCTGGATTGAAAATTTGAGA
Found at i:67893914 original size:29 final size:30
Alignment explanation
Indices: 67893877--67893942 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
67893867 TTTAAGTCCA
* *
67893877 TTTAATTTTCAATTTGTCTTTCTT-TTTAC
1 TTTAATTTTCAATTTGCCTTTCTTCTTGAC
* **
67893906 TTTATTTTTCTTTTTGCCTTTCTTCTTGAC
1 TTTAATTTTCAATTTGCCTTTCTTCTTGAC
67893936 TTTAATT
1 TTTAATT
67893943 ATCATTTTCC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.14, C:0.15, G:0.05, T:0.67
Consensus pattern (30 bp):
TTTAATTTTCAATTTGCCTTTCTTCTTGAC
Found at i:67896472 original size:46 final size:46
Alignment explanation
Indices: 67896422--67896597 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
67896412 TGATTGAGCA
*
67896422 TCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67896468 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67896513 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67896561 -CCTGATCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67896598 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67896578 original size:93 final size:93
Alignment explanation
Indices: 67896419--67896590 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
67896409 GGATGATTGA
*
67896419 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
67896484 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
67896512 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGATCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
67896576 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
67896591 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67898097 original size:18 final size:18
Alignment explanation
Indices: 67898054--67898089 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67898044 TCACCTAGAT
67898054 AATATCATCTACCATAAA
1 AATATCATCTACCATAAA
67898072 AATATCATCTACCATAAA
1 AATATCATCTACCATAAA
67898090 GGTATCATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (18 bp):
AATATCATCTACCATAAA
Found at i:67908269 original size:40 final size:39
Alignment explanation
Indices: 67908225--67908329 Score: 113
Period size: 39 Copynumber: 2.6 Consensus size: 39
67908215 AGTGACCATA
*
67908225 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* * *
67908265 TCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
67908303 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
67908330 AACGAGTAGC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.04
39 31 0.55
40 23 0.41
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67908289 original size:39 final size:40
Alignment explanation
Indices: 67908188--67908329 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
67908178 AATGATGTCT
* * *
67908188 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
67908228 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
* *
67908268 GGGCTAAG-CCCGAAGGTATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
67908307 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
67908330 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
39 33 0.38
40 42 0.49
41 10 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:67908623 original size:47 final size:47
Alignment explanation
Indices: 67908554--67908721 Score: 237
Period size: 47 Copynumber: 3.6 Consensus size: 47
67908544 AAGGGTTGGT
*
67908554 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67908601 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
67908648 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGACCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67908695 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67908722 TCCCGAAGGG
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 107 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67918964 original size:24 final size:24
Alignment explanation
Indices: 67918932--67918980 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
67918922 TCCCTTATGA
*
67918932 TGGTCTACGAGACTTAAAACATAC
1 TGGTCTACGAGACCTAAAACATAC
67918956 TGGTCTACGAGACCTAAAACATAC
1 TGGTCTACGAGACCTAAAACATAC
67918980 T
1 T
67918981 TTTAAGGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (24 bp):
TGGTCTACGAGACCTAAAACATAC
Found at i:67922983 original size:33 final size:33
Alignment explanation
Indices: 67922940--67923006 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
67922930 TAAAAAGCTC
67922940 AATTTGGATTGTTTGAAACTTTGATGTTCTTAT
1 AATTTGGATTGTTTGAAACTTTGATGTTCTTAT
* *
67922973 AATTTTGATTGTTTGAAACTTTGATGTTTTTAT
1 AATTTGGATTGTTTGAAACTTTGATGTTCTTAT
67923006 A
1 A
67923007 GTTAAGCTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.04, G:0.16, T:0.54
Consensus pattern (33 bp):
AATTTGGATTGTTTGAAACTTTGATGTTCTTAT
Found at i:67922997 original size:16 final size:15
Alignment explanation
Indices: 67922949--67923001 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
67922939 CAATTTGGAT
67922949 TGTTTGAAACTTTGA
1 TGTTTGAAACTTTGA
* *
67922964 TGTTCTTATAATTTTGA
1 TGTT-TGA-AACTTTGA
67922981 TTGTTTGAAACTTTGA
1 -TGTTTGAAACTTTGA
67922997 TGTTT
1 TGTTT
67923002 TTATAGTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 9 0.29
16 9 0.29
17 9 0.29
18 4 0.13
ACGTcount: A:0.23, C:0.06, G:0.17, T:0.55
Consensus pattern (15 bp):
TGTTTGAAACTTTGA
Found at i:67923388 original size:30 final size:30
Alignment explanation
Indices: 67923353--67923432 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
67923343 AGAAACTTCT
** *
67923353 ACACGGGTGATCCACACGCTTATGTGTGAC
1 ACACGGGTGATCCACACGCCCATGTATGAC
*
67923383 ACACGGGTGATCCACACGCCCGTGTATGAC
1 ACACGGGTGATCCACACGCCCATGTATGAC
67923413 ACACGGGTAGA-CCACACGCC
1 ACACGGGT-GATCCACACGCC
67923433 TGTGTGTCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 43 0.96
31 2 0.04
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.16
Consensus pattern (30 bp):
ACACGGGTGATCCACACGCCCATGTATGAC
Found at i:67933286 original size:9 final size:10
Alignment explanation
Indices: 67933259--67933285 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
67933249 GAGCCAAAAA
67933259 AAAAAAAAGG
1 AAAAAAAAGG
67933269 AAAAAAAAGG
1 AAAAAAAAGG
67933279 AAAAAAA
1 AAAAAAA
67933286 GAAATGTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGG
Found at i:67934760 original size:19 final size:20
Alignment explanation
Indices: 67934736--67934784 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
67934726 ATTATAAAAT
67934736 AATTTAATTTTAGT-GTTAA
1 AATTTAATTTTAGTAGTTAA
*
67934755 AATTT-ATTTTTGTAGTTAA
1 AATTTAATTTTAGTAGTTAA
67934774 AATTTAATTTT
1 AATTTAATTTT
67934785 TATACATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.26
19 15 0.56
20 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (20 bp):
AATTTAATTTTAGTAGTTAA
Found at i:67935390 original size:31 final size:29
Alignment explanation
Indices: 67935343--67935423 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 29
67935333 GTTTATAAAA
* *
67935343 TTTTAAATTAATAATAAAATTGTACTTTTATC
1 TTTTAAA--AATAATAAAATT-TAATTTAATC
*
67935375 TTTTTATAAATAATAAAAATTTAATTTAATC
1 -TTTTAAAAATAAT-AAAATTTAATTTAATC
*
67935406 TTTTAAAAATTATAAAAT
1 TTTTAAAAATAATAAAAT
67935424 ATAAATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 5 0.12
30 11 0.26
31 14 0.33
32 6 0.14
33 6 0.14
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (29 bp):
TTTTAAAAATAATAAAATTTAATTTAATC
Found at i:67935421 original size:30 final size:32
Alignment explanation
Indices: 67935343--67935422 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 32
67935333 GTTTATAAAA
* *
67935343 TTTTAAATTAATAAT-AAAATTGTACTTTTATCT
1 TTTTAAA--AATAATAAAAATTGTAATTTAATCT
*
67935376 TTTTATAAATAATAAAAATT-TAATTTAATC-
1 TTTTAAAAATAATAAAAATTGTAATTTAATCT
*
67935406 TTTTAAAAATTATAAAA
1 TTTTAAAAATAATAAAA
67935423 TATAAATTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 15 0.37
31 14 0.34
32 6 0.15
33 6 0.15
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (32 bp):
TTTTAAAAATAATAAAAATTGTAATTTAATCT
Found at i:67935446 original size:17 final size:16
Alignment explanation
Indices: 67935411--67935450 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
67935401 TAATCTTTTA
67935411 AAAATTA-TAAAATAT
1 AAAATTATTAAAATAT
67935426 -AAATTATTAAAATATT
1 AAAATTATTAAAATA-T
67935442 AAAATTATT
1 AAAATTATT
67935451 TATTAGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 7 0.32
16 1 0.05
17 8 0.36
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATTATTAAAATAT
Found at i:67937866 original size:23 final size:22
Alignment explanation
Indices: 67937824--67937866 Score: 77
Period size: 22 Copynumber: 1.9 Consensus size: 22
67937814 TTTCTGACAC
67937824 TTAACAAGCTTATTTATAACTG
1 TTAACAAGCTTATTTATAACTG
67937846 TTAACAAGCTTATTTTATAAC
1 TTAACAAGCTTA-TTTATAAC
67937867 GGTTTTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (22 bp):
TTAACAAGCTTATTTATAACTG
Found at i:67948174 original size:11 final size:11
Alignment explanation
Indices: 67948157--67948205 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
67948147 AGATAAATAT
67948157 TATTTTATTAA
1 TATTTTATTAA
* *
67948168 TACTTTAATAAGA
1 TA-TTTTATTA-A
*
67948181 TATTTTATTAT
1 TATTTTATTAA
67948192 TATTTTATTAA
1 TATTTTATTAA
67948203 TAT
1 TAT
67948206 ATAAAGAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
11 15 0.50
12 12 0.40
13 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:67948207 original size:24 final size:24
Alignment explanation
Indices: 67948152--67948207 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
67948142 TAATTAGATA
67948152 AATATTATTTTATTAATACTTTAAT
1 AATA-TATTTTATTAATACTTTAAT
* * * *
67948177 AAGATATTTTATTATTATTTTATT
1 AATATATTTTATTAATACTTTAAT
67948201 AATATAT
1 AATATAT
67948208 AAAGAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
AATATATTTTATTAATACTTTAAT
Found at i:67950425 original size:46 final size:46
Alignment explanation
Indices: 67950372--67950580 Score: 276
Period size: 46 Copynumber: 4.5 Consensus size: 46
67950362 AATTAAAAGT
*
67950372 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
* *
67950418 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
* * * * * **
67950464 ACCATGGTCGAAGGATACCATGGCAACGTGACATGAAAAGAACAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
*
67950510 ACCATGGTTGAAAGATACCATGGCAACATGATA-GAAAATGAGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGAGTAAG
* * *
67950556 ACCATAGTTGAAAGACACTATGGCA
1 ACCATGGTTGAAAGATACCATGGCA
67950581 TCACGTCAAA
Statistics
Matches: 142, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 1 0.01
46 141 0.99
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.20
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
Found at i:67958394 original size:21 final size:20
Alignment explanation
Indices: 67958356--67958395 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
67958346 CTGTATGTTT
*
67958356 TTGGAAAATTGAGTTTAAGG
1 TTGGAAAATTGAGCTTAAGG
*
67958376 TTGGAAATTTTGAGCTTAAG
1 TTGGAAA-ATTGAGCTTAAG
67958396 TCATAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.33, C:0.03, G:0.28, T:0.38
Consensus pattern (20 bp):
TTGGAAAATTGAGCTTAAGG
Found at i:67962307 original size:42 final size:42
Alignment explanation
Indices: 67962260--67962374 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
67962250 AGGGTTACTC
67962260 AGACTACGTGTAAGACCATATCTGGGATACGACATCAATATG
1 AGACTACGTGTAAGACCATATCTGGGATACGACATCAATATG
* * * * * *
67962302 AGACTACATGTAAGACCATATTTGGGGTATGGCATCGATATG
1 AGACTACGTGTAAGACCATATCTGGGATACGACATCAATATG
* * * *
67962344 AGACTTCGTTTAAGACCATAGCTGGGCTACG
1 AGACTACGTGTAAGACCATATCTGGGATACG
67962375 TGTAAGACCA
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (42 bp):
AGACTACGTGTAAGACCATATCTGGGATACGACATCAATATG
Found at i:67962423 original size:65 final size:65
Alignment explanation
Indices: 67962305--67962428 Score: 194
Period size: 65 Copynumber: 1.9 Consensus size: 65
67962295 CAATATGAGA
* * * * *
67962305 CTACATGTAAGACCATATTTGGGGTATGGCATCGATATGAGACTTCGTTTAAGACCATAGCTGGG
1 CTACATGTAAGACCATATCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATAGCTGGG
*
67962370 CTACGTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATA
1 CTACATGTAAGACCATATCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATA
67962429 TTTGGGGTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (65 bp):
CTACATGTAAGACCATATCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATAGCTGGG
Found at i:67962429 original size:42 final size:42
Alignment explanation
Indices: 67962370--67962528 Score: 210
Period size: 42 Copynumber: 3.8 Consensus size: 42
67962360 CATAGCTGGG
*
67962370 CTACGTGTAAGACCATATCTGGGATATGGCATCAATATGAGA
1 CTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAGA
* * *
67962412 CTACGTGTAAGACCATATTTGGGGTATGACATCGATATGAGA
1 CTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAGA
** * * *
67962454 CTTTGTGTAAGACCATAGCTGGGCTATTGTCATCGATATGAGA
1 CTACGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGA
* *
67962497 TTACATGTAAGACCATATCTGGGATATGGCAT
1 CTACGTGTAAGACCATATCTGGGATATGGCAT
67962529 TGGTACGGTA
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 64 0.65
43 35 0.35
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
CTACGTGTAAGACCATATCTGGGATATGGCATCGATATGAGA
Found at i:67962449 original size:107 final size:107
Alignment explanation
Indices: 67962263--67962479 Score: 380
Period size: 107 Copynumber: 2.0 Consensus size: 107
67962253 GTTACTCAGA
67962263 CTACGTGTAAGACCATATCTGGGATACGACATCAATATGAGACTACATGTAAGACCATATTTGGG
1 CTACGTGTAAGACCATATCTGGGATACGACATCAATATGAGACTACATGTAAGACCATATTTGGG
* *
67962328 GTATGGCATCGATATGAGACTTCGTTTAAGACCATAGCTGGG
66 GTATGACATCGATATGAGACTTCGTGTAAGACCATAGCTGGG
* * *
67962370 CTACGTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATATTTGGG
1 CTACGTGTAAGACCATATCTGGGATACGACATCAATATGAGACTACATGTAAGACCATATTTGGG
*
67962435 GTATGACATCGATATGAGACTTTGTGTAAGACCATAGCTGGG
66 GTATGACATCGATATGAGACTTCGTGTAAGACCATAGCTGGG
67962477 CTA
1 CTA
67962480 TTGTCATCGA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (107 bp):
CTACGTGTAAGACCATATCTGGGATACGACATCAATATGAGACTACATGTAAGACCATATTTGGG
GTATGACATCGATATGAGACTTCGTGTAAGACCATAGCTGGG
Found at i:67962546 original size:85 final size:84
Alignment explanation
Indices: 67962374--67962547 Score: 197
Period size: 85 Copynumber: 2.1 Consensus size: 84
67962364 GCTGGGCTAC
* * * *
67962374 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATATTTGGGGTAT
1 GTGTAAGACCATAGCTGGGATATGGCATCAATATGAGACTACATGTAAGACCATATCTGGGATAT
* **
67962439 GACATCGATATGAGACTTT
66 GACATCGATACGAGACCAT
* * * *
67962458 GTGTAAGACCATAGCTGGGCTATTGTCATCGATATGAGATTACATGTAAGACCATATCTGGGATA
1 GTGTAAGACCATAGCTGGGATA-TGGCATCAATATGAGACTACATGTAAGACCATATCTGGGATA
* * *
67962523 TGGCATTGGTACG-GTACCAT
65 TGACATCGATACGAG-ACCAT
67962543 GTGTA
1 GTGTA
67962548 CCGAACTCCC
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
84 21 0.28
85 53 0.72
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (84 bp):
GTGTAAGACCATAGCTGGGATATGGCATCAATATGAGACTACATGTAAGACCATATCTGGGATAT
GACATCGATACGAGACCAT
Found at i:67969051 original size:42 final size:41
Alignment explanation
Indices: 67968960--67969082 Score: 111
Period size: 42 Copynumber: 3.0 Consensus size: 41
67968950 CTTACATGGG
* * * * *
67968960 ATCTCATATCCATGCCAATAGCCCAGCCATGGTCTTACATGA
1 ATCTCATATCGATGCC-ATATCCAAGACATGGTCTTACACGA
* * *
67969002 TTTTCATATCGATGCCATTTCCAAGACATGGTCTTACACGAA
1 ATCTCATATCGATGCCATATCCAAGACATGGTCTTACACG-A
* * * * *
67969044 ATCTCATAACGATGTCATATCCTAGATATAGTCTTACAC
1 ATCTCATATCGATGCCATATCCAAGACATGGTCTTACAC
67969083 ATAAACTCAT
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
41 19 0.30
42 45 0.70
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (41 bp):
ATCTCATATCGATGCCATATCCAAGACATGGTCTTACACGA
Found at i:67969092 original size:42 final size:42
Alignment explanation
Indices: 67969005--67969095 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
67968995 TACATGATTT
* * * *
67969005 TCATATCGATGCCATTTCCAAGACATGGTCTTACACGAAATC
1 TCATAACGATGCCATATCCAAGACATAGTCTTACACGAAAAC
* * *
67969047 TCATAACGATGTCATATCCTAGATATAGTCTTACAC-ATAAAC
1 TCATAACGATGCCATATCCAAGACATAGTCTTACACGA-AAAC
67969089 TCATAAC
1 TCATAAC
67969096 CCTAATGTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 40 0.98
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (42 bp):
TCATAACGATGCCATATCCAAGACATAGTCTTACACGAAAAC
Found at i:67972309 original size:22 final size:22
Alignment explanation
Indices: 67972269--67972310 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
67972259 ATGACCTATT
*
67972269 TGTAAAAGGGTTATAAAATGTG
1 TGTAAAAGGGTGATAAAATGTG
* *
67972291 TGTAAAAGTGTGATTAAATG
1 TGTAAAAGGGTGATAAAATG
67972311 AAAAATGTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.33
Consensus pattern (22 bp):
TGTAAAAGGGTGATAAAATGTG
Found at i:67972827 original size:42 final size:42
Alignment explanation
Indices: 67972768--67972931 Score: 229
Period size: 42 Copynumber: 3.9 Consensus size: 42
67972758 TTAGGGTTAT
* *
67972768 TGAGACTACGTTTAAGACCATATCTAGGATATGGAATCAATA
1 TGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAATA
67972810 TGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAATA
1 TGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAATA
* * * *
67972852 TGAGACTTCGTGTAAGACCTTAGCTTGGATATTGGCATCAATA
1 TGAGACTACGTGTAAGACCATATCTAGGATA-TGGCATCAATA
* * * *
67972895 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACTACGTGTAAGACCATATCTAGGATATGGCAT
67972932 TGGTATGATT
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 73 0.68
43 35 0.32
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
TGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAATA
Found at i:67972950 original size:85 final size:84
Alignment explanation
Indices: 67972768--67972931 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 84
67972758 TTAGGGTTAT
* * * * *
67972768 TGAGACTACGTTTAAGACCATATCTAGGATATGGAATCAATATGAGACTACGTGTAAGACCATAT
1 TGAGACTTCGTGTAAGACCATAGCTAGGATATGGAATCAATACGAGACTACATGTAAGACCATAT
67972833 CTAGGATATGGCATCAATA
66 CTAGGATATGGCATCAATA
* * * *
67972852 TGAGACTTCGTGTAAGACCTTAGCTTGGATATTGGCATCAATACGAGATTACATGTAAGACCATA
1 TGAGACTTCGTGTAAGACCATAGCTAGGATA-TGGAATCAATACGAGACTACATGTAAGACCATA
*
67972917 TCTGGGATATGGCAT
65 TCTAGGATATGGCAT
67972932 TGGTATGATT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 26 0.38
85 43 0.62
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (84 bp):
TGAGACTTCGTGTAAGACCATAGCTAGGATATGGAATCAATACGAGACTACATGTAAGACCATAT
CTAGGATATGGCATCAATA
Found at i:67973191 original size:65 final size:65
Alignment explanation
Indices: 67973077--67973200 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 65
67973067 ACTCATGAGA
* * * *
67973077 CTACTTGTAAGACCATATTTGAGGTATGGCATCGATATGAGACTTCGTGTAAGACCATAGCTGGG
1 CTACGTGTAAAACCATATTTGAGGTATGGCATCAATATGAGACTACGTGTAAGACCATAGCTGGG
67973142 CTACGTGTAAAACCATATTTG-GGATATGGCATCAATATGAGACTACGTGTAAGACCATA
1 CTACGTGTAAAACCATATTTGAGG-TATGGCATCAATATGAGACTACGTGTAAGACCATA
67973201 TTTGGGGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 2 0.04
65 52 0.96
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (65 bp):
CTACGTGTAAAACCATATTTGAGGTATGGCATCAATATGAGACTACGTGTAAGACCATAGCTGGG
Found at i:67973201 original size:42 final size:42
Alignment explanation
Indices: 67973142--67973295 Score: 200
Period size: 42 Copynumber: 3.6 Consensus size: 42
67973132 CATAGCTGGG
* * *
67973142 CTACGTGTAAAACCATATTTGGGATATGGCATCAATATGAGA
1 CTACATGTAAGACCATATTTGGGATATGGCATCGATATGAGA
* * *
67973184 CTACGTGTAAGACCATATTTGGGGTATGGCATTGATATGAGA
1 CTACATGTAAGACCATATTTGGGATATGGCATCGATATGAGA
* ** *
67973226 CTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGA
1 CTACATGTAAGACCATATTTGGGATA-TGGCATCGATATGAGA
*
67973269 TTACATGTAAGACCATATTTGGGATAT
1 CTACATGTAAGACCATATTTGGGATAT
67973296 AGAATTGGTA
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 60 0.62
43 36 0.38
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (42 bp):
CTACATGTAAGACCATATTTGGGATATGGCATCGATATGAGA
Found at i:67975136 original size:94 final size:92
Alignment explanation
Indices: 67974890--67975206 Score: 325
Period size: 94 Copynumber: 3.4 Consensus size: 92
67974880 TCCATCGAGG
* * * *
67974890 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTATACGTGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATG-ATGCG-GCTGATGCATGTCCCA
* *
67974955 GACATGTCTTACAC-GAGCACGAAACTTAG
64 GACATGTCTTACACTG-GCACTAAACTTAA
* * * * * * *
67974984 CCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTAACATCATTGAGGCTGGTGCATGTCCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATGA-TGCGGCTGATGCATGTCCCAG
* *
67975047 ACATGTCTTACACTGGCACTCACCTCTACA
65 ACATGTCTTACACTGGCACTAAACT-TA-A
* *
67975077 CCGATGCCATGTCCCAAACGTGGTCTTACACGGGCTATCATGATGCGGCTGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATGATGCGGCTGATGCATGTCCCAGA
* * * ***
67975142 CACGTCTTACACTAGCCCTTGTCTTAA
66 CATGTCTTACACTGGCACTAAACTTAA
*
67975169 TGCCGATGCCATGTCCCAAACATGGTCTTATACTGGCT
1 --CCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
67975207 CTCACATAAC
Statistics
Matches: 184, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
91 36 0.20
92 22 0.12
93 21 0.11
94 87 0.47
95 18 0.10
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATGATGCGGCTGATGCATGTCCCAGA
CATGTCTTACACTGGCACTAAACTTAA
Found at i:67978974 original size:32 final size:32
Alignment explanation
Indices: 67978924--67978995 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
67978914 CCTATGACAC
* *
67978924 GAGGAC-TTAACTTTCCCTTTTTATCAAATCT
1 GAGGACTTTAACTTGCCCTTTTTACCAAATCT
67978955 GAGGACTTTAACTTGCCCTTTTTACCAAATCT
1 GAGGACTTTAACTTGCCCTTTTTACCAAATCT
67978987 GAGGACTTT
1 GAGGACTTT
67978996 CCTCTATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 6 0.16
32 32 0.84
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (32 bp):
GAGGACTTTAACTTGCCCTTTTTACCAAATCT
Found at i:67981419 original size:20 final size:20
Alignment explanation
Indices: 67981396--67981437 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
67981386 ATGCCCGAAC
67981396 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
67981416 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
67981436 TC
1 TC
67981438 ACTTATGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.17, G:0.33, T:0.36
Consensus pattern (20 bp):
TCGTTGAGTTGAGTCCGAGT
Found at i:67981469 original size:66 final size:66
Alignment explanation
Indices: 67981353--67981484 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
67981343 TCAAAACTCA
* *
67981353 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTGAGTCCGAGTTC
67981418 G
66 G
*
67981419 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC-AAGCTCATTGAGTTGAGTTCGAGTT
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA-CTCATTGAGTTGAGTCCGAGTT
67981483 CG
65 CG
67981485 CTTATGGGCG
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
65 2 0.03
66 60 0.97
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (66 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTGAGTCCGAGTTC
G
Found at i:67990036 original size:6 final size:6
Alignment explanation
Indices: 67990025--67990049 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67990015 GCATTGATGT
67990025 AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA A
67990050 TGGTTTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:67995154 original size:39 final size:40
Alignment explanation
Indices: 67995096--67995184 Score: 126
Period size: 39 Copynumber: 2.2 Consensus size: 40
67995086 TGTTTGACAA
* * **
67995096 TTAGTGTGCATTTCGAAATAGTTTCAGTTATATAAAGCAC
1 TTAGTGTGCGTTTCAAAATAGTTTCAGCCATATAAAGCAC
*
67995136 TTAGT-TGCGTTTCAAAATAGTTTCGGCCATATAAAGCAC
1 TTAGTGTGCGTTTCAAAATAGTTTCAGCCATATAAAGCAC
67995175 TTAGTGTGCG
1 TTAGTGTGCG
67995185 AACTAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.79
40 9 0.21
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (40 bp):
TTAGTGTGCGTTTCAAAATAGTTTCAGCCATATAAAGCAC
Found at i:67997091 original size:49 final size:49
Alignment explanation
Indices: 67996927--67997109 Score: 213
Period size: 49 Copynumber: 3.7 Consensus size: 49
67996917 CTGGTATGCA
* ** *
67996927 TAGTAGCCTGCACTTAGTACCACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * * *
67996977 TAGTAGCCTGCCCTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
* * * *
67997028 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
*
67997077 TAGTAGCCTGCACTTAGTGCTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
67997110 TCACAATAGA
Statistics
Matches: 109, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
49 39 0.36
50 34 0.31
51 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:67997100 original size:100 final size:101
Alignment explanation
Indices: 67996914--67997107 Score: 273
Period size: 100 Copynumber: 1.9 Consensus size: 101
67996904 TAGACAAGGC
* * * *
67996914 TATCTGGTATGCATAGTAGCCTGCACTTAGTACCACACACGTGACCTAACCATCTGATACACGTA
1 TATCGGGTACGCATAGTAGCCTACACTTAGTACCACACACGCGACCTAACCATCTGATACACGTA
*
67996979 GTAGCCTGCCCTTAGTACTACACACGTGATCGAAGT
66 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * ** * *
67997015 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AATTATCTGGTACATGTA
1 TATCGGGTACGCATAGTAGCCTACACTTAGTACCACACACGCGACCTAACCATCTGATACACGTA
*
67997079 GTAGCCTGCACTTAGTGCTACACACGTGA
66 GTAGCCTGCACTTAGTACTACACACGTGA
67997108 CCTCACAATA
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
100 41 0.51
101 40 0.49
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (101 bp):
TATCGGGTACGCATAGTAGCCTACACTTAGTACCACACACGCGACCTAACCATCTGATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:68004551 original size:79 final size:81
Alignment explanation
Indices: 68004442--68004624 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
68004432 TACTCATTCA
* * *
68004442 AATGCCTTCGGGACATGGCCCGG-TTATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
68004505 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
68004522 AATGCCTTC-GGACTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
68004585 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
68004601 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68004625 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:68004624 original size:40 final size:39
Alignment explanation
Indices: 68004440--68004624 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
68004430 GCTACTCATT
* * *
68004440 CAAATGCCTTCGGGACATGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
* *
68004480 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
* *
68004520 CCAATGCCTTCGGACTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
68004559 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGTAAC-TCGCA
68004600 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
68004625 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 37 0.30
40 74 0.60
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:68017749 original size:21 final size:21
Alignment explanation
Indices: 68017724--68017764 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
68017714 GCTGAATGGC
*
68017724 TAATGTGAAATATGTGTGAGT
1 TAATGTGAAATATGTATGAGT
68017745 TAATGTGAAATATGTATGAG
1 TAATGTGAAATATGTATGAG
68017765 ATATGTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (21 bp):
TAATGTGAAATATGTATGAGT
Found at i:68017798 original size:48 final size:48
Alignment explanation
Indices: 68017745--68018252 Score: 863
Period size: 48 Copynumber: 10.3 Consensus size: 48
68017735 ATGTGTGAGT
*
68017745 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGAC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68017793 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68017841 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68017889 TAATGTGAAATAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGC
1 TAATGTG----AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68017941 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68017989 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68018037 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68018085 TAATGTGAAATAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTG----AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68018137 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68018185 TAATGTGAAATAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TAATGTG----AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68018237 TAGTGTGAAATATGTA
1 TAATGTGAAATATGTA
68018253 GGCGACGTGT
Statistics
Matches: 442, Mismatches: 6, Indels: 24
0.94 0.01 0.05
Matches are distributed among these distances:
48 301 0.68
52 141 0.32
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (48 bp):
TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
Found at i:68017921 original size:148 final size:148
Alignment explanation
Indices: 68017752--68018252 Score: 893
Period size: 148 Copynumber: 3.4 Consensus size: 148
68017742 AGTTAATGTG
*
68017752 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATAT
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
68017817 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
68017882 GAATGGCTAATGTGAAAT
131 GAATGGCTAATGTGAAAT
*
68017900 AAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATAT
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
*
68017965 GTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
68018030 GAATGGCTAATGTG----
131 GAATGGCTAATGTGAAAT
*
68018044 AAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATAAATATGTATGAG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----AAATATGTATGAG
68018109 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
62 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
68018174 AGCCGAATGGCTAATGTGAAAT
127 AGCCGAATGGCTAATGTGAAAT
*
68018196 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68018253 GGCGACGTGT
Statistics
Matches: 339, Mismatches: 6, Indels: 16
0.94 0.02 0.04
Matches are distributed among these distances:
144 48 0.14
148 245 0.72
152 46 0.14
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (148 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAAT
Found at i:68017959 original size:100 final size:100
Alignment explanation
Indices: 68017745--68018252 Score: 915
Period size: 100 Copynumber: 5.2 Consensus size: 100
68017735 ATGTGTGAGT
*
68017745 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTG----AAATAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
68017806 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68017841 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
*
68017906 GTATGAGATATGTATATGTGGTAAAGCTGAATGGC
66 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68017941 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTG----AAATAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
68018002 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68018037 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATAAATAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
68018102 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
68018137 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
68018202 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
68018237 TAGTGTGAAATATGTA
1 TAATGTGAAATATGTA
68018253 GGCGACGTGT
Statistics
Matches: 398, Mismatches: 6, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
96 149 0.37
100 249 0.63
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (100 bp):
TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAATAT
GTATGAGATATGTATATGTGGTAAAGCCGAATGGC
Found at i:68018507 original size:37 final size:37
Alignment explanation
Indices: 68018399--68018507 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
68018389 GGAAATATAT
*
68018399 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
68018436 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
68018473 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
68018508 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:68021547 original size:27 final size:27
Alignment explanation
Indices: 68021517--68022490 Score: 1073
Period size: 27 Copynumber: 36.3 Consensus size: 27
68021507 TTAGTTTACC
**
68021517 AAATTACCAAAATACCCTTCTTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68021544 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68021571 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * * * *
68021598 AAATCAGCAAAACACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
68021625 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68021652 AAATCACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * * *
68021679 AAATTACTAGAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68021706 AAATCACCAAAATACCCCT-G---ATA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68021729 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68021756 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
68021783 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68021810 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68021837 AATTTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68021864 AAATCACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
68021891 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* * * *
68021918 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
68021945 AAATTACCAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68021972 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68021999 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68022026 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
68022053 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* * **
68022080 AAATTACCAACATACCCCTGGTTTGCA
1 AAATTACCAAAATACCCTTGGTTTATA
* * * * *
68022107 AATTTACTAGAATACCTTTGGTATATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68022134 AAATCACCAAAATACCCCTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68022161 AAATTACCAAAATATCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68022188 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68022215 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68022242 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
*
68022269 AAATTACCAAAATACCCCTT--TTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTATA
* * *
68022295 AAATTACTAGAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68022322 AAATCACCAAAATATCCC-TGGTTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTATA
* *
68022349 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68022376 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
68022403 AAATTACTAAAATGCCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68022430 AAATTACAAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
68022457 AAATTACCAAAATACCCCTT-GTTTGTG
1 AAATTACCAAAATA-CCCTTGGTTTATA
68022484 AAATTAC
1 AAATTAC
68022491 TCCTCGACCT
Statistics
Matches: 779, Mismatches: 158, Indels: 20
0.81 0.17 0.02
Matches are distributed among these distances:
23 19 0.02
24 1 0.00
25 5 0.01
26 19 0.02
27 722 0.93
28 13 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:68022524 original size:27 final size:29
Alignment explanation
Indices: 68022482--68022536 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 29
68022472 CCCTTGTTTG
68022482 TGAAATTACTCCTCGACCTGTAAAATTAT
1 TGAAATTACTCCTCGACCTGTAAAATTAT
*
68022511 TGAAA-TAC-CCTCGACTTGTAAAATTA
1 TGAAATTACTCCTCGACCTGTAAAATTA
68022537 CCAAAGTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.68
28 3 0.12
29 5 0.20
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (29 bp):
TGAAATTACTCCTCGACCTGTAAAATTAT
Found at i:68022546 original size:27 final size:27
Alignment explanation
Indices: 68022492--68022548 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
68022482 TGAAATTACT
**
68022492 CCTCGACCTGTAAAATTATTGAAATAC
1 CCTCGACCTGTAAAATTATCCAAATAC
*
68022519 CCTCGACTTGTAAAATTA-CCAAAGTAC
1 CCTCGACCTGTAAAATTATCCAAA-TAC
68022546 CCT
1 CCT
68022549 TGATTTACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (27 bp):
CCTCGACCTGTAAAATTATCCAAATAC
Found at i:68022562 original size:27 final size:26
Alignment explanation
Indices: 68022531--68022604 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 26
68022521 TCGACTTGTA
68022531 AAATTACCAAAGTACCCTTGATTTA-C
1 AAATTACCAAA-TACCCTTGATTTACC
**
68022557 AGAATTACCATTTTACCCTTGATTTACC
1 A-AATTACCA-AATACCCTTGATTTACC
*
68022585 AAATTACTGAAATACCCTTG
1 AAATTAC-CAAATACCCTTG
68022605 TAGGGTAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 35 0.90
28 3 0.08
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
AAATTACCAAATACCCTTGATTTACC
Found at i:68022624 original size:27 final size:27
Alignment explanation
Indices: 68022589--68022858 Score: 287
Period size: 27 Copynumber: 10.0 Consensus size: 27
68022579 TTTACCAAAT
68022589 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
68022616 TGCTAAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
68022643 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
68022670 TA-TCGAAATACCCCTGTAGCGTAGAAA
1 TACT-GAAATACCCTTGTAGGGTAGAAA
* * *
68022697 TACCGAAATACCCCTGTAGCGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
** * *
68022724 TACCAAAATACCCTTGTAGGATAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAA
* * * *
68022751 TACTAAAATGCCCCTGTAGGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAA
*
68022778 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
68022805 TACCT-AAATACTCC-TGTAAGGTAGAAT
1 TA-CTGAAATAC-CCTTGTAGGGTAGAAA
* *
68022832 TACTGAGATACCCTTGTGGGGTA-AAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
68022858 T
1 T
68022859 TACCATTTTA
Statistics
Matches: 207, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.03
27 197 0.95
28 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
TACTGAAATACCCTTGTAGGGTAGAAA
Found at i:68022679 original size:54 final size:54
Alignment explanation
Indices: 68022593--68022858 Score: 327
Period size: 54 Copynumber: 4.9 Consensus size: 54
68022583 CCAAATTACT
* * **
68022593 GAAATACCCTTGTAGGGTAGAAATGCTAAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACC
* * *
68022647 GAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTGTAGCGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACC
* * * * *
68022701 GAAATACCCCTGTAGCGTAGAAATACCAAAATACCCTTGTAGGATAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACC
* * *
68022755 AAAATGCCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACC
* * * * * * *
68022809 TAAATACTCCTGTAAGGTAGAATTACTGAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAAT
68022859 TACCATTTTA
Statistics
Matches: 182, Mismatches: 30, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
53 4 0.02
54 178 0.98
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACC
Found at i:68022862 original size:81 final size:80
Alignment explanation
Indices: 68022586--68022858 Score: 327
Period size: 81 Copynumber: 3.4 Consensus size: 80
68022576 TGATTTACCA
* * ** *
68022586 AATTACTGAAATACCCTTGTAGGGTAGAAATGCTAAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
*
68022651 TACCCCTGTAGGGTAG
66 TA-CCCTGTAAGGTAG
* * * *
68022667 AAATA-TCGAAATACCCCTGTAGCGTAGAAATACCGAAATACCCCTGTAGCGTAGAAATACCAAA
1 AATTACT-GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCAAA
68022731 ATACCCTTGT-AGGATAG
65 ATACCC-TGTAAGG-TAG
* * * *
68022748 AATTACTAAAATGCCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCTAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
68022813 TACTCCTGTAAGGTAG
66 TAC-CCTGTAAGGTAG
* * *
68022829 AATTACTGAGATACCCTTGTGGGGTA-AAAT
1 AATTACTGAAATACCCCTGTAGGGTAGAAAT
68022859 TACCATTTTA
Statistics
Matches: 162, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
80 9 0.06
81 147 0.91
82 6 0.04
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
AATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
TACCCTGTAAGGTAG
Found at i:68023151 original size:27 final size:26
Alignment explanation
Indices: 68023107--68023158 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
68023097 CTCGCTGCAA
* *
68023107 TCTGGTGGCTTTGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
68023134 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
68023159 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:68023167 original size:67 final size:67
Alignment explanation
Indices: 68023088--68023241 Score: 281
Period size: 67 Copynumber: 2.3 Consensus size: 67
68023078 GAGGAAGTGT
* * *
68023088 TCTGGTAGCCTCGCTGCAATCTGGTGGCTTTGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTACGTCACAA
68023153 TA
66 TA
68023155 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTACGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTACGTCACAA
68023220 TA
66 TA
68023222 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
68023242 TTCTGTGGTG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTACGTCACAA
TA
Found at i:68023218 original size:27 final size:26
Alignment explanation
Indices: 68023174--68023225 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
68023164 CTCGCTGCAA
* *
68023174 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTACGCCACA-ATATCTGT
*
68023201 TCTGGTGACTACGTCACAATATCTG
1 TCTGGTGACTACGCCACAATATCTG
68023226 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACTACGCCACAATATCTGT
Done.