Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 204 of 320
Found at i:68023375 original size:6 final size:6
Alignment explanation
Indices: 68023344--68023421 Score: 70
Period size: 6 Copynumber: 12.7 Consensus size: 6
68023334 TTGCATTCAT
* *
68023344 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
68023393 -TCACCTA ATTCTG ATTCTG ATTCTG ATTC
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTC
68023422 ATGTAATGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
5 3 0.05
6 48 0.83
7 5 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:68023379 original size:31 final size:31
Alignment explanation
Indices: 68023344--68023421 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
68023334 TTGCATTCAT
* * *
68023344 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
68023375 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
68023406 ATTCTGATTCTGATTC
1 ATTCTGATTCTGATTC
68023422 ATGTAATGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:68026596 original size:27 final size:27
Alignment explanation
Indices: 68026545--68026602 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
68026535 CTATCTCATT
* * *
68026545 TTTATTGTCTTGGCGGACTACCCCGTG
1 TTTATTGTCTCGGCAGACTACCCCGTA
68026572 TTTATTGTCTCGGCAGACTACCCCGTA
1 TTTATTGTCTCGGCAGACTACCCCGTA
68026599 TTTA
1 TTTA
68026603 CTTTATCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.38
Consensus pattern (27 bp):
TTTATTGTCTCGGCAGACTACCCCGTA
Found at i:68027417 original size:21 final size:21
Alignment explanation
Indices: 68027375--68027417 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
68027365 AGATATGGAG
**
68027375 TATAAAAACTTATCTGGTGCT
1 TATAAAAACTTATCTGACGCT
68027396 TATAAAAACTTATCTGACGCT
1 TATAAAAACTTATCTGACGCT
68027417 T
1 T
68027418 CTTTCCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (21 bp):
TATAAAAACTTATCTGACGCT
Found at i:68045189 original size:39 final size:40
Alignment explanation
Indices: 68045094--68045277 Score: 168
Period size: 40 Copynumber: 4.7 Consensus size: 40
68045084 TTGAATGATG
*
68045094 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
68045132 ATCTGGACTAAGAT-CCGAAGGCATTTGTCCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
68045173 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
68045212 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
68045251 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68045278 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
39 51 0.42
40 59 0.49
41 10 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:68045299 original size:79 final size:79
Alignment explanation
Indices: 68045146--68045300 Score: 174
Period size: 79 Copynumber: 2.0 Consensus size: 79
68045136 GGACTAAGAT
* * ** *
68045146 CCGAAGGCATTTGTCCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
68045211 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
68045225 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTCCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
*
68045287 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
68045301 ATTTCGAAGG
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.05
79 36 0.56
80 25 0.39
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:68053178 original size:40 final size:40
Alignment explanation
Indices: 68053033--68053216 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
68053023 TTGAATGATG
* *
68053033 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
68053072 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68053112 TCCGGGATAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68053151 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68053192 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68053217 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 53 0.42
40 62 0.50
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68053238 original size:79 final size:79
Alignment explanation
Indices: 68053085--68053239 Score: 183
Period size: 79 Copynumber: 2.0 Consensus size: 79
68053075 GGACTAAGAT
* ** *
68053085 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGATAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGATAAGCCCGAAGGCATTTGAACGAGTGACTAA
68053150 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
68053164 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGATAAG-CCCGAAGGCATTTGAACGAGTGA-
*
68053226 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
68053240 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.05
79 37 0.57
80 25 0.38
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGATAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:68062065 original size:22 final size:21
Alignment explanation
Indices: 68062035--68062081 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
68062025 TACAAATTAA
68062035 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
68062057 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
68062078 ATCT
1 ATCT
68062082 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:68062087 original size:19 final size:19
Alignment explanation
Indices: 68062052--68062130 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
68062042 AGATTACAAG
68062052 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
68062073 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
68062090 ATCATAACTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68062109 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68062128 ATC
1 ATC
68062131 CTTAAATATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:68062971 original size:41 final size:42
Alignment explanation
Indices: 68062918--68063392 Score: 192
Period size: 41 Copynumber: 11.4 Consensus size: 42
68062908 ATCTGCTCCG
68062918 CTACTGCTTA-GGGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGGATAAGATCTGCAAATTTAACCTGTTACC
** * * *
68062959 CTACTGCTTAGGGGATTAAG----GCAGGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
*
68062999 ACTACTGCTTAGGGAGATAAGATCTGTAAATTTAACCTGTTACC
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
* ** **** ** * *
68063043 CTACTGCTTAGGGGATTAAGGTGAGTCGTCGTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTG-CAAATTTAACCTGTTACC
* ** * *
68063086 GCTACTGTTTAGACAGATAAGATCTGC-----GAACCTATTACC
1 -CTACTGCTTAG-GGGATAAGATCTGCAAATTTAACCTGTTACC
* * * * *
68063125 CTACTGCTTAGGGGATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
68063165 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
* * * * * *
68063209 CTACCGCTTAGGGGATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
68063249 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
* * * * * **
68063293 CTACTACTTAGGGGATTAAG-GC-G-AGACTTTGATCTACT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCA-AATTTAACCTGTTACC
68063333 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
*
68063377 CTACTACTTAGGGGAT
1 CTACTGCTTAGGGGAT
68063393 TAAGGCGTTG
Statistics
Matches: 311, Mismatches: 74, Indels: 97
0.65 0.15 0.20
Matches are distributed among these distances:
34 2 0.01
37 2 0.01
38 18 0.06
39 10 0.03
40 13 0.04
41 99 0.32
42 23 0.07
43 94 0.30
44 37 0.12
45 13 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (42 bp):
CTACTGCTTAGGGGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:68063044 original size:84 final size:84
Alignment explanation
Indices: 68062871--68063399 Score: 786
Period size: 84 Copynumber: 6.3 Consensus size: 84
68062861 ATCATTTTGG
* * *
68062871 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
68062934 AGATCTGCAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
68062956 ACCCTACTGCTTAGGGGATTAAGGC-AGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCGA-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
*
68063020 ATCTGTAAATTTAACCTGTT
65 ATCTGCAAATTTAACCTGTT
* * * **
68063040 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCGTCGATCTGCTCCGCTACTGTTTAGACAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
* *
68063105 AGATCTGC-----GAACCTATT
63 AGATCTGCAAATTTAACCTGTT
68063122 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
68063187 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
68063206 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
68063271 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
68063290 ACCCTACTACTTAGGGGATTAAGGCGAGACTTTGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
68063355 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
68063374 ACCCTACTACTTAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
68063400 TTGAATTTTG
Statistics
Matches: 407, Mismatches: 26, Indels: 23
0.89 0.06 0.05
Matches are distributed among these distances:
79 35 0.09
81 1 0.00
82 62 0.15
83 3 0.01
84 247 0.61
85 25 0.06
87 34 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:68064367 original size:7 final size:7
Alignment explanation
Indices: 68064355--68064410 Score: 60
Period size: 7 Copynumber: 7.6 Consensus size: 7
68064345 CCTCTCCATT
68064355 TTTTTTC
1 TTTTTTC
68064362 TTTTTTC
1 TTTTTTC
68064369 TTTTTTC
1 TTTTTTC
*
68064376 TTTTTCC
1 TTTTTTC
68064383 TTTTCTTTCC
1 -TTT-TTT-C
68064393 TTTTTTCC
1 TTTTTT-C
68064401 TTTTTT-
1 TTTTTTC
68064407 TTTT
1 TTTT
68064411 GAAATAGAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
6 4 0.09
7 20 0.45
8 14 0.32
9 5 0.11
10 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:68064396 original size:31 final size:29
Alignment explanation
Indices: 68064353--68064410 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
68064343 GGCCTCTCCA
* *
68064353 TTTTTTTTCTTTTTTCTTTTTTCTTTTTCC
1 TTTTTTTCCTTTTTTCCTTTTT-TTTTTCC
68064383 TTTTCTTTCCTTTTTTCCTTTTTTTTTT
1 TTTT-TTTCCTTTTTTCCTTTTTTTTTT
68064411 GAAATAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (29 bp):
TTTTTTTCCTTTTTTCCTTTTTTTTTTCC
Found at i:68070051 original size:22 final size:21
Alignment explanation
Indices: 68070025--68070066 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68070015 ATTAAATATC
68070025 CAAGATTACAAGATCATATCTT
1 CAAGATTAC-AGATCATATCTT
* *
68070047 CAAGATTGCATATCATATCT
1 CAAGATTACAGATCATATCT
68070067 AAGACTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
CAAGATTACAGATCATATCTT
Found at i:68070075 original size:19 final size:19
Alignment explanation
Indices: 68070037--68070134 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
68070027 AGATTACAAG
68070037 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
68070058 ATCATATCTAAGACTGCAT
1 ATCATATCTAAGATTGCAT
68070077 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
68070094 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68070113 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68070132 ATC
1 ATC
68070135 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:68070101 original size:36 final size:37
Alignment explanation
Indices: 68070037--68070134 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
68070027 AGATTACAAG
68070037 ATCATATCTTCAAGATTGCATATCATATCTAAGACTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGACTGCAT
*
68070077 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGACTGCAT
68070113 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
68070135 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGACTGCAT
Found at i:68075974 original size:102 final size:102
Alignment explanation
Indices: 68075798--68076002 Score: 365
Period size: 102 Copynumber: 2.0 Consensus size: 102
68075788 AACGAAGCAA
* *
68075798 GACACGGCCGTGTGCACCCACACGCCCAAGGAACACTGGCGTGGGGCGAATGTTAGACGCGCCTA
1 GACACGACCGTGTGCACCCACACGCCCAAGGAACACTGGCGTGGGACGAATGTTAGACGCGCCTA
68075863 AATTTAAAAATCGTGAAACACACGGGCACGGCCATGT
66 AATTTAAAAATCGTGAAACACACGGGCACGGCCATGT
* *
68075900 GACACGACCGTGTGTACCCACATGCCCAAGGAACACTGGCGTGGGACGAATGTTAGACGCGCCTA
1 GACACGACCGTGTGCACCCACACGCCCAAGGAACACTGGCGTGGGACGAATGTTAGACGCGCCTA
*
68075965 AATTTAAAAATCGTGAAACACACGGGCACGGCCGTGT
66 AATTTAAAAATCGTGAAACACACGGGCACGGCCATGT
68076002 G
1 G
68076003 CCCCAAAATC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.29, C:0.27, G:0.28, T:0.16
Consensus pattern (102 bp):
GACACGACCGTGTGCACCCACACGCCCAAGGAACACTGGCGTGGGACGAATGTTAGACGCGCCTA
AATTTAAAAATCGTGAAACACACGGGCACGGCCATGT
Found at i:68076302 original size:48 final size:48
Alignment explanation
Indices: 68076246--68076467 Score: 363
Period size: 48 Copynumber: 4.6 Consensus size: 48
68076236 ATACTCATAG
68076246 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
* *
68076294 TAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
* * *
68076342 TAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
*
68076390 TAGCCACTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
* * *
68076438 TAGCCATTCAGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
68076468 ATTTATCTTG
Statistics
Matches: 161, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 161 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
Found at i:68083563 original size:17 final size:17
Alignment explanation
Indices: 68083538--68083574 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
68083528 GTAAAATTTG
68083538 TTTAGCTATCAACAACC
1 TTTAGCTATCAACAACC
*
68083555 TTTATCTATCAACAACC
1 TTTAGCTATCAACAACC
68083572 TTT
1 TTT
68083575 CATTTTATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.03, T:0.38
Consensus pattern (17 bp):
TTTAGCTATCAACAACC
Found at i:68088423 original size:49 final size:49
Alignment explanation
Indices: 68088346--68088441 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
68088336 TCTATTGTGA
* * *
68088346 GGTCACATGTGTTGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
68088395 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
68088442 CTTTGGCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:68093509 original size:49 final size:49
Alignment explanation
Indices: 68093437--68093614 Score: 171
Period size: 49 Copynumber: 3.6 Consensus size: 49
68093427 TGTGAGGTCA
* * * *
68093437 CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAA-TTGGTT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGAT
* * *
68093485 GCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGAT
1 -CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGAT
*** ** * *
68093535 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGAT-GGTTAGGT
1 CA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGAT
68093585 CACGTGTGTAGTACTAAGTGCAGGCTACTA
1 CA--TGTGTAGTACTAAGTGCAGGCTACTA
68093615 TGCATACCAG
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
49 39 0.36
50 38 0.35
51 32 0.29
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTCGAT
Found at i:68093616 original size:101 final size:100
Alignment explanation
Indices: 68093434--68093631 Score: 270
Period size: 101 Copynumber: 2.0 Consensus size: 100
68093424 TATTGTGAGG
* ** *
68093434 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTTGCATGTGTAGTATT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
* *
68093499 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
* * ** ** *
68093534 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTAC
68093599 TAAGTGCAGGCTACTATGCATACCAGATAACTT
65 TAAGTGCAGGCTACTATGCATACCAGATAACTT
68093632 TGGCTACAAG
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
100 40 0.48
101 44 0.52
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
Found at i:68099015 original size:24 final size:24
Alignment explanation
Indices: 68098951--68099015 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
68098941 ATGCATTGAG
*
68098951 ATATATACGTAATAATAGAAATAAA
1 ATATATACGTAAT-ATAGAAAAAAA
* *
68098976 ATTTATACGTAGTATA-AAAAAAGA
1 ATATATACGTAATATAGAAAAAA-A
*
68099000 ATATATACATAATATA
1 ATATATACGTAATATA
68099016 CATATATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 5 0.15
24 17 0.52
25 11 0.33
ACGTcount: A:0.57, C:0.05, G:0.08, T:0.31
Consensus pattern (24 bp):
ATATATACGTAATATAGAAAAAAA
Found at i:68109716 original size:8 final size:8
Alignment explanation
Indices: 68109703--68109732 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
68109693 TGCAATGCTG
68109703 ATGCATGA
1 ATGCATGA
68109711 ATGCATGA
1 ATGCATGA
68109719 ATGCGATGA
1 ATGC-ATGA
68109728 ATGCA
1 ATGCA
68109733 AAAAACGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (8 bp):
ATGCATGA
Found at i:68109729 original size:17 final size:16
Alignment explanation
Indices: 68109691--68109732 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
68109681 TAGTGCGTAT
68109691 GATGCAATGC-TGATGC
1 GATG-AATGCATGATGC
68109707 -ATGAATGCATGAATGC
1 GATGAATGCATG-ATGC
68109723 GATGAATGCA
1 GATGAATGCA
68109733 AAAAACGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 4 0.17
17 9 0.39
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (16 bp):
GATGAATGCATGATGC
Found at i:68143276 original size:40 final size:40
Alignment explanation
Indices: 68143228--68143493 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
68143218 GCAAACACAT
* * *
68143228 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
68143268 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
68143308 TTGCCTTCGGGTCATAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68143348 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68143388 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68143428 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68143467 TTGCCTTC-GGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
68143494 TCCAATGCTC
Statistics
Matches: 217, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
38 19 0.09
39 18 0.08
40 180 0.83
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:68151996 original size:40 final size:40
Alignment explanation
Indices: 68151948--68152215 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
68151938 GCAAACACAT
* * *
68151948 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
68151988 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
68152028 TTGCCTTCGGGTCATAGCCCGAATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68152068 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68152108 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68152148 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68152188 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
68152216 TCCAATGCTC
Statistics
Matches: 217, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:68156675 original size:33 final size:33
Alignment explanation
Indices: 68156636--68156698 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
68156626 ACACTCAAAA
68156636 AAGTATGGATAAAGAAACTTTAGTTTTTTATAC
1 AAGTATGGATAAAGAAACTTTAGTTTTTTATAC
68156669 AAGTATGGATAAAGAAACTTTAGTTTTTTA
1 AAGTATGGATAAAGAAACTTTAGTTTTTTA
68156699 CACATAGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.40
Consensus pattern (33 bp):
AAGTATGGATAAAGAAACTTTAGTTTTTTATAC
Found at i:68158741 original size:19 final size:19
Alignment explanation
Indices: 68158706--68158784 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
68158696 AGATTACAAG
*
68158706 ATCATATCTTCAAGATTGGAT
1 ATCATATC-T-AAGATTGCAT
68158727 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68158746 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
68158763 ATCATACCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
68158782 ATC
1 ATC
68158785 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:68158774 original size:36 final size:40
Alignment explanation
Indices: 68158706--68158784 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 40
68158696 AGATTACAAG
*
68158706 ATCATATCTTCAAGATTGGATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGGATATCATACCTAAGATTGCAT
68158746 ATCATATC-T-AAGATT-G-TATCATACCTAAGATTGCAT
1 ATCATATCTTCAAGATTGGATATCATACCTAAGATTGCAT
68158782 ATC
1 ATC
68158785 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
37 1 0.03
38 6 0.16
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (40 bp):
ATCATATCTTCAAGATTGGATATCATACCTAAGATTGCAT
Found at i:68158916 original size:6 final size:6
Alignment explanation
Indices: 68158907--68158940 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
68158897 TTAGACTTTG
68158907 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
68158941 TAACTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:68158948 original size:18 final size:18
Alignment explanation
Indices: 68158909--68158952 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
68158899 AGACTTTGTT
**
68158909 TTATTTTTATTTTTATTT
1 TTATTTTTATTTTTATAC
68158927 TTATTTTTATTTTT-TAAC
1 TTATTTTTATTTTTAT-AC
68158945 TTATTTTT
1 TTATTTTT
68158953 GGGCCCGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (18 bp):
TTATTTTTATTTTTATAC
Found at i:68159333 original size:87 final size:86
Alignment explanation
Indices: 68159193--68159514 Score: 223
Period size: 87 Copynumber: 3.7 Consensus size: 86
68159183 ACAATACAGA
* * * ** *
68159193 GATGCCAAATCATCTTAGATCTGCTTCAGCGT-AAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 GATGCCAAATCATCTTGGATTTGCTTCA--GTAAAACATC-TGAAGGTTAGATCTGCTATGTCTT
68159256 CGATTTGCTCCTTGTGAACACAAG
63 CGATTTGCTCCTTGTGAACACAAG
68159280 GATGCCAAATCATCTTGGATTTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATG---T--
1 GATGCCAAATCATCTTGGATTTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTATGTCTTCG
* * **
68159340 ATCTGCT-CTCCGTCGAA-A-TGG
65 ATTTGCTCCT-TGT-GAACACAAG
* ** * * * *
68159361 AGATGCCAGATCTATTATCTTGGATTTGCTTTGGTGTAAGAACATCCGAAAGTCAAATCTGCTAT
1 -GATGCCA-A---ATCATCTTGGATTTGC-TT-CAGTAA-AACATCTGAAGGTTAGATCTGCTAT
* *
68159426 GTCTTCGATTTGTTCCTTGTAAACACAAG
58 GTCTTCGATTTGCTCCTTGTGAACACAAG
* * * * *
68159455 AATCCCAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGT
1 GATGCCAAATCATCTTGGATTTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTATGT
68159515 ACCTACTCTT
Statistics
Matches: 178, Mismatches: 35, Indels: 44
0.69 0.14 0.17
Matches are distributed among these distances:
81 3 0.02
82 16 0.09
83 4 0.02
84 1 0.01
85 2 0.01
86 18 0.10
87 71 0.40
88 28 0.16
89 15 0.08
91 1 0.01
92 3 0.02
93 13 0.07
94 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (86 bp):
GATGCCAAATCATCTTGGATTTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATGTCTTCGA
TTTGCTCCTTGTGAACACAAG
Found at i:68159535 original size:175 final size:175
Alignment explanation
Indices: 68159233--68159802 Score: 908
Period size: 175 Copynumber: 3.3 Consensus size: 175
68159223 GTAAACACGT
* * * *
68159233 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
68159298 ATTTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
* *
68159362 GATGCCAGATCTATTATCTTGGATTTGCTTTGGTGTAAGAACATCC
130 GATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTGAGAACATCC
*
68159408 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATCCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
68159473 ATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTACTCTTCGTTGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* *
68159538 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATTC
131 ATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* *
68159583 GAAAGTCAAATCTGTTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
68159648 ATCTGCTTCATTATAAACATCTAAAGGTTAGACCTACTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
68159713 ATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTGAGAACATCC
131 ATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * *
68159758 GAAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACA
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACA
68159803 GGGATGTCAA
Statistics
Matches: 362, Mismatches: 32, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
175 359 0.99
176 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTGAGAACATCC
Found at i:68159833 original size:44 final size:44
Alignment explanation
Indices: 68159767--68160081 Score: 246
Period size: 44 Copynumber: 7.1 Consensus size: 44
68159757 CGAAAATCAG
* * * *
68159767 ATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGTCAA
1 ATCTGCTA--TCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
* *
68159813 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGAGATGCCAT
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAA
*** ** * * * * * * *
68159857 AT-TAAAATCTTTGATCTATTTCGCTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCAATCT-GTTCCCTATAAACACAGGGATGCCAA
68159901 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
*
68159945 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGAGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * ** *
68159987 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACA-GGAGTGTTAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGGGA-TGCCAA
*
68160033 ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAA
68160078 ATCT
1 ATCT
68160082 TGTTTCTTTT
Statistics
Matches: 207, Mismatches: 50, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
42 2 0.01
43 23 0.11
44 125 0.60
45 44 0.21
46 13 0.06
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:68159932 original size:132 final size:132
Alignment explanation
Indices: 68159763--68160081 Score: 494
Period size: 132 Copynumber: 2.4 Consensus size: 132
68159753 CATCCGAAAA
* * *
68159763 TCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGTCAAATCTGCTATCTTCAA
1 TCAGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA
* * * *
68159828 CTTGTTCCCTATAAACACAGAGATGCCATATTAAAATCTTTGATCTATTTCGCTGTAAGCACAGG
64 CTTGTTCCCTATAAACACAGAGATGCCATACTAAAATCTTCGATCTACTTCACTGTAAGCACAGG
68159893 AATG
129 AATG
*
68159897 TCAGATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* * * *
68159962 TGTTCCCTATAAACACAGAGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAG
66 TGTTCCCTATAAACACAGAGATGCCATACTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAA
68160027 TG
131 TG
*
68160029 TTAGATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCAGATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
68160082 TGTTTCTTTT
Statistics
Matches: 170, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
132 129 0.76
133 29 0.17
134 12 0.07
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (132 bp):
TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
TGTTCCCTATAAACACAGAGATGCCATACTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAA
TG
Found at i:68168670 original size:40 final size:40
Alignment explanation
Indices: 68168586--68168810 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
68168576 TTGAATGATG
* * * * *
68168586 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68168626 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68168666 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTCCTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68168705 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68168745 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68168786 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68168811 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68168828 original size:80 final size:80
Alignment explanation
Indices: 68168625--68168843 Score: 225
Period size: 79 Copynumber: 2.8 Consensus size: 80
68168615 AAGTGACCAT
* ** * *
68168625 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCA
*
68168687 TTGGTGCGAGTTCCTAA
64 TTGGTGCGAGTTACTAA
* ** *
68168704 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
68168769 TGTGCGAGTTACTATA
66 GGTGCGAGTTACTA-A
* * * *
68168785 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
68168844 TACGTGATTT
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 59 0.49
80 58 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
GGTGCGAGTTACTAA
Found at i:68190030 original size:50 final size:50
Alignment explanation
Indices: 68189951--68190344 Score: 330
Period size: 50 Copynumber: 7.9 Consensus size: 50
68189941 TTCATTGTGA
* *
68189951 GTCACATGTGTAGTACAAAGTGCAGGCTACTATGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAG
* * * * *
68190001 GTCGCATGTGCAGTACTAAGTGTAGGCTACTATGCGTACCCG-TTAACTTCA-
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGA--T-AG
* * * * * * * *
68190052 ATCACGTGTGTAGTACGAAGTGTAGGCTACTATCTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAG
* * * * *
68190102 GTCACGTGTGTAGTA-TGAATTGTAGGATACTACGTGTACAAGATTGATAG
1 GTCACATGTGTAGTACT-AAGTGTAGGCTACTATGTGTACCAGATTGATAG
* * *
68190152 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGA--TAG
* * * * * * * * *
68190203 ATCACGTGTGTTGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAG
** * **
68190253 ACCACGTGTGTAGTACT-AGTGTAGGCTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAG
* * **
68190302 GTCACATGTGTAGTACTGAGTGCAGGCTACTATGCATACCAGA
1 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGA
68190345 GAGCTTCGGT
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
49 47 0.18
50 145 0.54
51 72 0.27
52 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAG
Found at i:68190133 original size:101 final size:101
Alignment explanation
Indices: 68189952--68190133 Score: 231
Period size: 101 Copynumber: 1.8 Consensus size: 101
68189942 TCATTGTGAG
* * * *
68189952 TCACATGTGTAGTACAAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGCAGTAC
1 TCACATGTGTAGTACAAAGTGCAGGCTACTATCTGTACCAGATGGATAAGTCACATGTGCAGTAC
*
68190017 TAAGTGTAGGCTACTATGCGTACCCGTTAACTTCAA
66 TAAGTGTAGGATACTATGCGTACCCGTTAACTTCAA
* * * * * * *
68190053 TCACGTGTGTAGTACGAAGTGTAGGCTACTATCTGTATCAGATGGTTAAGTCACGTGTGTAGTA-
1 TCACATGTGTAGTACAAAGTGCAGGCTACTATCTGTACCAGATGGATAAGTCACATGTGCAGTAC
*
68190117 TGAATTGTAGGATACTA
66 T-AAGTGTAGGATACTA
68190134 CGTGTACAAG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
100 1 0.01
101 66 0.99
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACAAAGTGCAGGCTACTATCTGTACCAGATGGATAAGTCACATGTGCAGTAC
TAAGTGTAGGATACTATGCGTACCCGTTAACTTCAA
Found at i:68190224 original size:151 final size:150
Alignment explanation
Indices: 68189950--68190341 Score: 554
Period size: 151 Copynumber: 2.6 Consensus size: 150
68189940 ATTCATTGTG
* * * * * *
68189950 AGTCACATGTGTAGTACAAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGCAGT
1 AGTCACGTGTGTAGTA-TAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
*
68190015 ACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCAATCACGTGTGTAGTACGAAGTGTAGGCT
65 ACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCAATCACGTGTGTAGTACGAAGTGCAGGCT
68190080 ACTATC-TGTATCAGATGGTTA
130 ACTA-CGTGTATCAGATGGTTA
* * *
68190101 AGTCACGTGTGTAGTATGAATTGTAGGATACTACGTGTACAAGATTGATAGGTCACATGTGTAGT
1 AGTCACGTGTGTAGTAT-AAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* * * *
68190166 ACTAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCACGTGTGTTGTACTAAGTGCAGGCT
65 ACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCAATCACGTGTGTAGTACGAAGTGCAGGCT
68190231 ACTACGTGTATCAGATGGTTA
130 ACTACGTGTATCAGATGGTTA
** *
68190252 AACCACGTGTGTAGTACT-AGTGTAGGCTACTACATGTACCAGATTGATAGGTCACATGTGTAGT
1 AGTCACGTGTGTAGTA-TAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* * *
68190316 ACTGAGTGCAGGCTACTATGCATACC
65 ACTAAGTGTAGGCTACTATGCGTACC
68190342 AGAGAGCTTC
Statistics
Matches: 214, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
150 65 0.30
151 148 0.69
152 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (150 bp):
AGTCACGTGTGTAGTATAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTA
CTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCAATCACGTGTGTAGTACGAAGTGCAGGCTA
CTACGTGTATCAGATGGTTA
Found at i:68196503 original size:9 final size:9
Alignment explanation
Indices: 68196489--68196513 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68196479 CCAAGTTTTG
68196489 CAATTTATT
1 CAATTTATT
68196498 CAATTTATT
1 CAATTTATT
68196507 CAATTTA
1 CAATTTA
68196514 GTCCCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (9 bp):
CAATTTATT
Found at i:68203640 original size:21 final size:22
Alignment explanation
Indices: 68203590--68203640 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
68203580 CTAGAATAAT
* *
68203590 TTTCATTT-TTTCATGTTCAAGT
1 TTTC-TTTATTTCATGTACAAGA
*
68203612 TTTTTTTATTTCAT-TACAAGA
1 TTTCTTTATTTCATGTACAAGA
68203633 TTTCTTTA
1 TTTCTTTA
68203641 CTCCATTTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.22, C:0.12, G:0.06, T:0.61
Consensus pattern (22 bp):
TTTCTTTATTTCATGTACAAGA
Found at i:68209730 original size:47 final size:47
Alignment explanation
Indices: 68209677--68210216 Score: 855
Period size: 47 Copynumber: 11.5 Consensus size: 47
68209667 ACAAGATATG
68209677 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* ** *
68209724 TATATGTGACAAGGCATAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
68209771 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
68209818 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
68209865 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
68209912 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
68209959 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
68210006 TATATGAGATAAGACCTAATGGCCGATGTGATGAATGTAAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
68210053 TATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
68210100 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
68210147 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
68210194 TATATGTGATAAGGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
68210217 ATTTGTGCCA
Statistics
Matches: 449, Mismatches: 44, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 449 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:68209871 original size:25 final size:25
Alignment explanation
Indices: 68209843--68209920 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
68209833 CTAATGGCCA
68209843 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
68209868 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
68209890 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
68209915 ATGTGA
1 ATGTGA
68209921 CAAGGCCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:68218547 original size:30 final size:30
Alignment explanation
Indices: 68218499--68218559 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
68218489 TTACCGAGCC
*
68218499 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTATAATTATGCAAAAGTT
* *
68218529 TAGGGGCAAAAA-TATAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTATAATTATGCAAAAGTT
68218559 T
1 T
68218560 GTATTAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTATAATTATGCAAAAGTT
Found at i:68225686 original size:27 final size:27
Alignment explanation
Indices: 68225656--68225833 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
68225646 ATATTGAGTC
* * * *
68225656 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68225683 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
68225710 TGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68225738 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68225765 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68225792 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68225819 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68225834 CTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68225797 original size:82 final size:81
Alignment explanation
Indices: 68225677--68225832 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
68225667 TGCTATATAA
* *
68225677 TCAACTCGCACACTTAGTGCTACGTAATCAAATTGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAA-TCGCA
68225742 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * *
68225759 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATT-GCACACTTAGTGCAACATAGTCAAATCGC
68225822 ACACTTAGTGC
64 ACACTTAGTGC
68225833 TCTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 19 0.28
82 48 0.72
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68233721 original size:55 final size:55
Alignment explanation
Indices: 68233635--68233778 Score: 132
Period size: 55 Copynumber: 2.6 Consensus size: 55
68233625 TACATAGGTC
*** * *
68233635 CACGCCCGTGTTAACTTGACAGGTTCACCCACGG-AT-GATGGGCAT-AGGCGTCTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTATCGA--GGCATGA-GCGTCTCG
* * * * *
68233690 CACGCCCGTGTTGTTTTGGCAGCTTCGCCCACAGTTTCGAGGCATGAGTGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTATCGAGGCATGAGCGTCTCG
* *
68233745 AACGCCCGTGTTGTTTTGGTAGGTTCGCCCACGG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGG
68233779 CCATGTCGCA
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
55 68 0.94
56 2 0.03
57 2 0.03
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTATCGAGGCATGAGCGTCTCG
Found at i:68236093 original size:35 final size:35
Alignment explanation
Indices: 68236041--68236108 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
68236031 TTGTAGAGTG
*
68236041 TTTCTAAATCCATCTGCACAAAGGATGAAATATTT
1 TTTCTAAATCCACCTGCACAAAGGATGAAATATTT
* *
68236076 TTTCTAATTCCACCTGCACACAGGATGAAATAT
1 TTTCTAAATCCACCTGCACAAAGGATGAAATAT
68236109 CATTACATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (35 bp):
TTTCTAAATCCACCTGCACAAAGGATGAAATATTT
Found at i:68248304 original size:29 final size:29
Alignment explanation
Indices: 68248261--68248385 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
68248251 GAAAGCATGT
*
68248261 ATATGAATGTGATTTAGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68248290 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
68248319 ATACGAATATGATTTGGGCCTGATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
68248348 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68248376 ATATGCATGT
1 ATATGAATGT
68248386 ATGTAGACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 22 0.27
29 61 0.73
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:68252604 original size:17 final size:18
Alignment explanation
Indices: 68252572--68252606 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
68252562 ACCGGGCCAG
68252572 GATGGGCTTATTGGGCCC
1 GATGGGCTTATTGGGCCC
*
68252590 GATGGGC-TGTTGGGCCC
1 GATGGGCTTATTGGGCCC
68252607 ATAATAGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.23, G:0.43, T:0.26
Consensus pattern (18 bp):
GATGGGCTTATTGGGCCC
Found at i:68252707 original size:29 final size:28
Alignment explanation
Indices: 68252664--68252788 Score: 144
Period size: 29 Copynumber: 4.4 Consensus size: 28
68252654 GAAAGCATGT
68252664 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGG-C
*
68252693 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGG-C
* * *
68252722 ATACGAATATGATTTGGGCCTGATGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
* *
68252750 TATATGAATGAGA-TTGGGCCTAGTGGGCC
1 -ATATGAATGTGATTTGGGCCTAATGGG-C
*
68252779 ATATGCATGT
1 ATATGAATGT
68252789 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
28 21 0.26
29 60 0.74
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.31
Consensus pattern (28 bp):
ATATGAATGTGATTTGGGCCTAATGGGC
Found at i:68256943 original size:38 final size:38
Alignment explanation
Indices: 68256896--68256974 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
68256886 CAAAATGAAT
68256896 GTTTTAGGCTAAATTGAATTGAATGAAATTTTGAATGA
1 GTTTTAGGCTAAATTGAATTGAATGAAATTTTGAATGA
68256934 GTTTTAGGCTAAATTGAATTGAATGAAATTTTGAATGA
1 GTTTTAGGCTAAATTGAATTGAATGAAATTTTGAATGA
68256972 GTT
1 GTT
68256975 AATTTGATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (38 bp):
GTTTTAGGCTAAATTGAATTGAATGAAATTTTGAATGA
Found at i:68257370 original size:23 final size:23
Alignment explanation
Indices: 68257291--68257420 Score: 102
Period size: 23 Copynumber: 5.5 Consensus size: 23
68257281 CCACAACTCG
*
68257291 TATGAGCTTACCGATATATCAGCTCG
1 TATGAGCTTACC-AT-T-TCAGCTCA
* * * *
68257317 TAAGAGCTTACTATTTTTATCTCA
1 TATGAGCTTACCA-TTTCAGCTCA
68257341 T-TGGAGCTTACCATTTCAGCTCA
1 TAT-GAGCTTACCATTTCAGCTCA
* * *
68257364 TATGAGCTTATCGTTTCAGCTTGA
1 TATGAGCTTACCATTTCAGC-TCA
* *
68257388 TA-GAGCTTACCGTTTCAGCTCG
1 TATGAGCTTACCATTTCAGCTCA
68257410 TATGAGCTTAC
1 TATGAGCTTAC
68257421 TGTTAGCTTG
Statistics
Matches: 84, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
22 3 0.04
23 48 0.57
24 20 0.24
25 2 0.02
26 11 0.13
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (23 bp):
TATGAGCTTACCATTTCAGCTCA
Found at i:68257444 original size:44 final size:44
Alignment explanation
Indices: 68257344--68257496 Score: 200
Period size: 44 Copynumber: 3.4 Consensus size: 44
68257334 TATCTCATTG
*
68257344 GAGCTTACCATTTCAGCTCATATGAGCTTATCGTTTCAGCTTGATA
1 GAGCTTACCATTTCAGCTCGTATGAGCTTAT-GTTT-AGCTTGATA
* *
68257390 GAGCTTACCGTTTCAGCTCGTATGAGCTTACTG-TTAGCTTGGTA
1 GAGCTTACCATTTCAGCTCGTATGAGCTTA-TGTTTAGCTTGATA
* * *
68257434 GAGCTTACCGTTTCAGCTCGTTTGAGCTTATTGTTTTGCTTGATA
1 GAGCTTACCATTTCAGCTCGTATGAGCTTA-TGTTTAGCTTGATA
*
68257479 GAGCTTACCATTTTAGCT
1 GAGCTTACCATTTCAGCT
68257497 TAATAGAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
44 39 0.41
45 27 0.28
46 29 0.30
47 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (44 bp):
GAGCTTACCATTTCAGCTCGTATGAGCTTATGTTTAGCTTGATA
Found at i:68257502 original size:23 final size:23
Alignment explanation
Indices: 68257344--68257508 Score: 142
Period size: 23 Copynumber: 7.3 Consensus size: 23
68257334 TATCTCATTG
* *
68257344 GAGCTTACCATTTCAGC-TCATA
1 GAGCTTACCGTTTCAGCTTGATA
*
68257366 TGAGCTTATCGTTTCAGCTTGATA
1 -GAGCTTACCGTTTCAGCTTGATA
*
68257390 GAGCTTACCGTTTCAGCTCG-TA
1 GAGCTTACCGTTTCAGCTTGATA
* *
68257412 TGAGCTTACTG-TT-AGCTTGGTA
1 -GAGCTTACCGTTTCAGCTTGATA
* * *
68257434 GAGCTTACCGTTTCAGCTCGTTT
1 GAGCTTACCGTTTCAGCTTGATA
** *
68257457 GAGCTTATTGTTT-TGCTTGATA
1 GAGCTTACCGTTTCAGCTTGATA
* * *
68257479 GAGCTTACCATTTTAGCTTAATA
1 GAGCTTACCGTTTCAGCTTGATA
68257502 GAGCTTA
1 GAGCTTA
68257509 TTATTCATTA
Statistics
Matches: 114, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
21 14 0.12
22 23 0.20
23 73 0.64
24 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTTGATA
Found at i:68275179 original size:13 final size:13
Alignment explanation
Indices: 68275163--68275187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68275153 AAGAGCCATC
68275163 AGCAAAGGAGCAA
1 AGCAAAGGAGCAA
68275176 AGCAAAGGAGCA
1 AGCAAAGGAGCA
68275188 CAGGAGCCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.32, T:0.00
Consensus pattern (13 bp):
AGCAAAGGAGCAA
Found at i:68276417 original size:21 final size:21
Alignment explanation
Indices: 68276398--68276435 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 21
68276388 AAAAAAGGAA
68276398 AAAGGAAA-AA-AATAATAGG
1 AAAGGAAATAATAATAATAGG
68276417 AAAGGAAATAATAATAATA
1 AAAGGAAATAATAATAATA
68276436 ATAATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (21 bp):
AAAGGAAATAATAATAATAGG
Found at i:68278145 original size:61 final size:61
Alignment explanation
Indices: 68278050--68278172 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
68278040 TTGATTCTCT
*
68278050 ACCCCTTTCCTATCCTAAATCACCATATCGAATTCTTGGAGTAAGAAAACTCATCGAATCA
1 ACCCCTTTCCTATCCTAAATCACCATATCGAATTCTTGGAGTAAGAAAACTCATCAAATCA
68278111 ACCCCTTTCCTATCCTAAATCACCATATCGAATTCTTGGAGTAAGAAAACTCATCAAATCA
1 ACCCCTTTCCTATCCTAAATCACCATATCGAATTCTTGGAGTAAGAAAACTCATCAAATCA
68278172 A
1 A
68278173 TCTTAGTTTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.28
Consensus pattern (61 bp):
ACCCCTTTCCTATCCTAAATCACCATATCGAATTCTTGGAGTAAGAAAACTCATCAAATCA
Found at i:68283758 original size:41 final size:41
Alignment explanation
Indices: 68283713--68283901 Score: 170
Period size: 41 Copynumber: 4.6 Consensus size: 41
68283703 ACTAGAGTGT
* *
68283713 AAACAGAGGCATGTAGGTGCAATTCAAGGGTATCAAAGTAC
1 AAACAGGGGCATGTATGTGCAATTCAAGGGTATCAAAGTAC
** * * * *
68283754 AAACAGGGGCACATATGTGCAATTTAGGGGTATCGAAGTAT
1 AAACAGGGGCATGTATGTGCAATTCAAGGGTATCAAAGTAC
* * *
68283795 AAACAGGGGCACATGTATGT--AATT-TAGGGACATCAAAG-AT
1 AAACAGGGG--CATGTATGTGCAATTCAAGGG-TATCAAAGTAC
* *
68283835 AAATAGGGGCATGTATGTGCAATTCAAGGGTACCAAAGTAC
1 AAACAGGGGCATGTATGTGCAATTCAAGGGTATCAAAGTAC
* * * *
68283876 AAATAGGGGCACGTATATACAATTCA
1 AAACAGGGGCATGTATGTGCAATTCA
68283902 GTAAATAATT
Statistics
Matches: 119, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 9 0.08
40 23 0.19
41 80 0.67
43 7 0.06
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (41 bp):
AAACAGGGGCATGTATGTGCAATTCAAGGGTATCAAAGTAC
Found at i:68285602 original size:49 final size:49
Alignment explanation
Indices: 68285501--68285674 Score: 156
Period size: 49 Copynumber: 3.6 Consensus size: 49
68285491 GTTGTGTGTT
** *
68285501 AGTGTAAGACCTGTCTGGGACATGAAATCGACACCAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAAGCC
* * * *
68285550 AGTGTAAGACCTGTCTGGGACATGGCATTGAC-CTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CAATAGATGAAAGCC
* * * *** **
68285599 AGTGTAAGACCAGTCTGGAACACGGCATCGACTTTAAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAAGCC
* *
68285646 AGTGTAAGACTATGTTTGGGACATGGCAT
1 AGTGTAAGAC-CTGTCTGGGACATGGCAT
68285675 TGGCATTTTA
Statistics
Matches: 99, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 15 0.15
48 14 0.14
49 70 0.71
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAAAGCC
Found at i:68285629 original size:98 final size:97
Alignment explanation
Indices: 68285501--68285676 Score: 219
Period size: 98 Copynumber: 1.8 Consensus size: 97
68285491 GTTGTGTGTT
* * * *
68285501 AGTGTAAGACCTGTCTGGGACATGAAATCGACACCAATAGATGAGAGCCAGTGTAAGAC-CTGTC
1 AGTGTAAGACCAGTCTGGAACACGAAATCGACACCAAT-G-TGAGAGCCAGTGTAAGACTATGTC
68285565 TGGGACATGGCATTGACCTCGATATATGAAAGTC
64 TGGGACATGGCATTGACCTCGATATATGAAAGTC
** *** ** *
68285599 AGTGTAAGACCAGTCTGGAACACGGCATCGACTTTAATGTGCTAGCCAGTGTAAGACTATGTTTG
1 AGTGTAAGACCAGTCTGGAACACGAAATCGACACCAATGTGAGAGCCAGTGTAAGACTATGTCTG
68285664 GGACATGGCATTG
66 GGACATGGCATTG
68285677 GCATTTTATC
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
96 16 0.25
97 19 0.29
98 30 0.46
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (97 bp):
AGTGTAAGACCAGTCTGGAACACGAAATCGACACCAATGTGAGAGCCAGTGTAAGACTATGTCTG
GGACATGGCATTGACCTCGATATATGAAAGTC
Found at i:68293164 original size:46 final size:48
Alignment explanation
Indices: 68293114--68293231 Score: 177
Period size: 46 Copynumber: 2.5 Consensus size: 48
68293104 CATGAGTGCC
*
68293114 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA-A-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAAGCT
* * *
68293160 AGTGTAAGACATGTCTGGGACATGCATCGGCTTTGGGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAAGCT
*
68293208 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
68293232 GCGTCAGCTT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
46 37 0.57
47 1 0.02
48 27 0.42
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATACAAGCT
Found at i:68293325 original size:49 final size:49
Alignment explanation
Indices: 68293251--68293469 Score: 235
Period size: 49 Copynumber: 4.5 Consensus size: 49
68293241 TATTGTGTGT
* * *
68293251 CAGTGTAAGACCTGTCTGGGGCATGGCATTGACACTGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGC
* * *
68293300 CAGTGTAAGGCCTATTTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGC
* * * * * *
68293349 CAGTATATGACCTATCTGGGACATGGCATCGGC-CTCGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACACT-GATAGATGAGAGC
* * * * * *
68293398 CAGTGTAAGACCTGTTTGGGACATGGCATCGGC-CTCGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACACT-GATAGATGAGAGC
*
68293447 CAATGTAAGACCTATCTGGGACA
1 CAGTGTAAGACCTATCTGGGACA
68293470 CGGGACTTTA
Statistics
Matches: 147, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
48 1 0.01
49 146 0.99
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGC
Found at i:68294576 original size:28 final size:28
Alignment explanation
Indices: 68294528--68294610 Score: 130
Period size: 28 Copynumber: 3.0 Consensus size: 28
68294518 ACAATTAGGA
*
68294528 CACAGGCGTGTCATGGATGTGTGAGAGG
1 CACAGGCGTGTCATGGCTGTGTGAGAGG
* *
68294556 CACGGGCGTGTCATGGCTGTGTGAGGGG
1 CACAGGCGTGTCATGGCTGTGTGAGAGG
*
68294584 CACAGGCGTGTCATGGCCGTGTGAGAG
1 CACAGGCGTGTCATGGCTGTGTGAGAG
68294611 ACATAGGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.17, C:0.18, G:0.45, T:0.20
Consensus pattern (28 bp):
CACAGGCGTGTCATGGCTGTGTGAGAGG
Found at i:68294618 original size:28 final size:28
Alignment explanation
Indices: 68294526--68294618 Score: 123
Period size: 28 Copynumber: 3.3 Consensus size: 28
68294516 ACACAATTAG
*
68294526 GACACAGGCGTGTCATGGATGTGTGAGA
1 GACACAGGCGTGTCATGGCTGTGTGAGA
* * *
68294554 GGCACGGGCGTGTCATGGCTGTGTGAGG
1 GACACAGGCGTGTCATGGCTGTGTGAGA
* *
68294582 GGCACAGGCGTGTCATGGCCGTGTGAGA
1 GACACAGGCGTGTCATGGCTGTGTGAGA
*
68294610 GACATAGGC
1 GACACAGGC
68294619 CATAGGCACG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.19, C:0.18, G:0.43, T:0.19
Consensus pattern (28 bp):
GACACAGGCGTGTCATGGCTGTGTGAGA
Found at i:68295968 original size:18 final size:17
Alignment explanation
Indices: 68295942--68295975 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
68295932 AACATTTTGT
*
68295942 AGAAAAATAATCACAAC
1 AGAAAAATAAACACAAC
68295959 AGAAAGAATAAACACAA
1 AGAAA-AATAAACACAA
68295976 GATTTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.15, G:0.09, T:0.09
Consensus pattern (17 bp):
AGAAAAATAAACACAAC
Found at i:68299206 original size:19 final size:20
Alignment explanation
Indices: 68299179--68299233 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
68299169 ATATTTTGAT
*
68299179 ATACCAAAATTTATAA-CTA
1 ATACCAAAATTTATAATCAA
* *
68299198 ATACAAAAATTTCTAATCAA
1 ATACCAAAATTTATAATCAA
*
68299218 ATACCAAAGTTTATAA
1 ATACCAAAATTTATAA
68299234 GAATATCTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.31
Consensus pattern (20 bp):
ATACCAAAATTTATAATCAA
Found at i:68299973 original size:23 final size:23
Alignment explanation
Indices: 68299916--68299973 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
68299906 AGTAATTTTT
*
68299916 AATATTTTA-AAA-TTTCGAATA
1 AATATTTTATAAATTTTCGAAAA
* *
68299937 TATA-TTTATAAAATTTTGGAAAA
1 AATATTTTAT-AAATTTTCGAAAA
68299960 AATATTTTATAAAT
1 AATATTTTATAAAT
68299974 ATTTAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
20 4 0.14
21 3 0.10
22 3 0.10
23 14 0.48
24 5 0.17
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (23 bp):
AATATTTTATAAATTTTCGAAAA
Found at i:68301833 original size:16 final size:16
Alignment explanation
Indices: 68301814--68301844 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68301804 TTATTTTTAA
*
68301814 TAAATTTTATAAATTT
1 TAAATTTTAAAAATTT
68301830 TAAATTTTAAAAATT
1 TAAATTTTAAAAATT
68301845 AATTAGTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAAATTTTAAAAATTT
Found at i:68303577 original size:8 final size:7
Alignment explanation
Indices: 68303558--68303587 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
68303548 TTTTATTTCA
68303558 TTTTATT
1 TTTTATT
68303565 TTTTATCT
1 TTTTAT-T
68303573 TTTTATT
1 TTTTATT
68303580 TTTTATT
1 TTTTATT
68303587 T
1 T
68303588 ATAAAATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTATT
Found at i:68304536 original size:20 final size:21
Alignment explanation
Indices: 68304500--68304541 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
68304490 TACACATTGT
68304500 TTATTTTAAACTTATTATATA
1 TTATTTTAAACTTATTATATA
*
68304521 TTATTTT-AAGTTATTATATA
1 TTATTTTAAACTTATTATATA
68304541 T
1 T
68304542 ATTATCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
TTATTTTAAACTTATTATATA
Found at i:68304568 original size:25 final size:24
Alignment explanation
Indices: 68304500--68304570 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 24
68304490 TACACATTGT
68304500 TTATTTTAAAC-TTAT-TATA-TA
1 TTATTTTAAACTTTATATATATTA
**
68304521 TTATTTTAAGTTATTATATATATTA
1 TTATTTTAAACT-TTATATATATTA
68304546 TCTATTTTAAACTTTATATATATTA
1 T-TATTTTAAACTTTATATATATTA
68304571 GTTAGTCTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 9 0.22
23 4 0.10
24 4 0.10
25 15 0.37
26 9 0.22
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (24 bp):
TTATTTTAAACTTTATATATATTA
Found at i:68304581 original size:25 final size:26
Alignment explanation
Indices: 68304534--68304592 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
68304524 TTTTAAGTTA
* *
68304534 TTATATATATTATCTATTTTAAACT-
1 TTATATATATTATCTAGTCTAAACTG
68304559 TTATATATATTAGT-TAGTCTAAACTG
1 TTATATATATTA-TCTAGTCTAAACTG
*
68304585 TTTTATAT
1 TTATATAT
68304593 GATTCTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (26 bp):
TTATATATATTATCTAGTCTAAACTG
Found at i:68308553 original size:19 final size:19
Alignment explanation
Indices: 68308529--68308582 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
68308519 AACACATCTT
68308529 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCA-TCA
68308548 TTTGCATTACATTTCATCA
1 TTTGCATTACATTTCATCA
* *
68308567 TATGCATTAAATTTCA
1 TTTGCATTACATTTCA
68308583 CAAAAAAGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 25 0.78
20 7 0.22
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.48
Consensus pattern (19 bp):
TTTGCATTACATTTCATCA
Found at i:68314032 original size:27 final size:27
Alignment explanation
Indices: 68313984--68314142 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
68313974 GCGAGGCTGC
* *
68313984 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
68314011 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
68314037 CAGATATATGTGGCAGAGCCACTAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
68314064 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
68314091 CAGATATATGTGGCAGAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
68314118 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
68314143 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:68314143 original size:54 final size:54
Alignment explanation
Indices: 68314002--68314145 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
68313992 GTGACGAAGT
* *
68314002 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
68314056 CACTAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
68314110 CACCAAATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
68314146 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:68315640 original size:12 final size:12
Alignment explanation
Indices: 68315623--68315658 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
68315613 CATTCAAGAG
68315623 CTTTCTCCTCTC
1 CTTTCTCCTCTC
68315635 CTTTCTCCTCTC
1 CTTTCTCCTCTC
*
68315647 CTTTCTCTTCTC
1 CTTTCTCCTCTC
68315659 TAACTTTCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (12 bp):
CTTTCTCCTCTC
Found at i:68315814 original size:26 final size:26
Alignment explanation
Indices: 68315779--68315886 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
68315769 TGAAATGCCC
*
68315779 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68315805 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
68315831 ATCATGTAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68315857 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68315883 ATCA
1 ATCA
68315887 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68318013 original size:42 final size:43
Alignment explanation
Indices: 68317950--68318111 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 43
68317940 CTTCGTTTTC
** *
68317950 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTTACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTTACATAA
*
68317993 T-GATGCCATAGCCCAGCTATGGTCTTACACAT-ATT-CATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTTACATA-A
*
68318034 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACAT-A
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TTACATAA
68318083 TCGATGCCATAGCCCAGCTATGGTCTTAC
1 TCGATGCCATAGCCCAGCTATGGTCTTAC
68318112 GCAAATCACA
Statistics
Matches: 102, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
40 4 0.04
41 4 0.04
42 57 0.56
43 1 0.01
45 2 0.02
49 30 0.29
50 1 0.01
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (43 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTTACATAA
Found at i:68318093 original size:49 final size:47
Alignment explanation
Indices: 68318036--68318203 Score: 178
Period size: 47 Copynumber: 3.6 Consensus size: 47
68318026 TTCATATATC
*
68318036 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 GATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA-AT
* * * * *
68318084 CGATGCCATAGCCCAGCTATGGTCTTACGC-AAATCACATATCTCACT
1 -GATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACAAT
* * * * * *
68318131 GATGCCATATCTCAGATATGGTCTTATACAGT-AGCATATATCACACT
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTAATCACATATCACAAT
*
68318178 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
68318204 TACGGAAATC
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 24 0.23
47 38 0.37
48 13 0.13
49 28 0.27
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (47 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACAAT
Found at i:68318223 original size:93 final size:95
Alignment explanation
Indices: 68317994--68318203 Score: 236
Period size: 95 Copynumber: 2.3 Consensus size: 95
68317984 TTTACATAAT
* * * * * *
68317994 GATGCCATAGCCCAGCTATGGTCTTACACATAT-TCATATAT--C-GATGCCATAGCCCAGCTAT
1 GATGCCATAGCCCAGATATGGTCTTACGCAAATCACATATCTCACTGATGCCATAGCCCAGATAT
*
68318055 GGTCTTACACGTAATCACATATCACATATC
66 GGTCTTACACGTAAGCACATATCACATATC
* * *
68318085 GATGCCATAGCCCAGCTATGGTCTTACGCAAATCACATATCTCACTGATGCCATATCTCAGATAT
1 GATGCCATAGCCCAGATATGGTCTTACGCAAATCACATATCTCACTGATGCCATAGCCCAGATAT
* * *
68318150 GGTCTTATACAGT-AGCATATATCACA-CT-
66 GGTCTTACAC-GTAAGCACATATCACATATC
*
68318178 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
68318204 TACGGAAATC
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
91 31 0.31
92 6 0.06
93 24 0.24
94 2 0.02
95 36 0.36
96 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (95 bp):
GATGCCATAGCCCAGATATGGTCTTACGCAAATCACATATCTCACTGATGCCATAGCCCAGATAT
GGTCTTACACGTAAGCACATATCACATATC
Found at i:68318260 original size:31 final size:31
Alignment explanation
Indices: 68318225--68318311 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
68318215 CTTGTCACTT
*
68318225 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
68318256 GTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
68318287 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
68318312 TGTCATTTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:68318391 original size:50 final size:51
Alignment explanation
Indices: 68318287--68318415 Score: 224
Period size: 50 Copynumber: 2.5 Consensus size: 51
68318277 CACTGATTAG
* * *
68318287 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
68318338 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
68318388 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
68318416 TGTAATGGTC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
50 49 0.66
51 25 0.34
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:68323740 original size:45 final size:44
Alignment explanation
Indices: 68323672--68324102 Score: 221
Period size: 45 Copynumber: 9.4 Consensus size: 44
68323662 ATTACAGTGC
68323672 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGATGAAGATAACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTA-GATGAAGATAACAAAT
* * ** *
68323717 CTCT-TCTCCCTGAAGTTACAGTGGAGTAGATTAA-A-GCCAAGT
1 CT-TATCTCCCTGAAGTTGCAGTGGAGTAGATGAAGATAACAAAT
* * * * *
68323759 CTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAG-TTACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAGATAACAAAT
* * * * * *
68323803 CTTATCTCCCTGAACTTGCAGTTGAATAGAACGAAAATAGCAAA-
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAG-ATGAAGATAACAAAT
* * * *
68323847 CTTTATCCCCCTGAAGTTGCAGTAGG-GTAGGTTGAAG--CACAAGT
1 C-TTATCTCCCTGAAGTTGCAGT-GGAGTA-GATGAAGATAACAAAT
* *
68323891 CTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAGATAACAAAT
* * * ** ** *
68323936 CTCATTTCCCTGAACTAACAGTGGAACAGATTGAAGCTACCAGCACTAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAG--A-TA--AC-AAAT
* * * * * *
68323987 CTTATCTCTCTGAAGTTACAGTAGAGTAGATCAAACCTACAGATTACAGAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGAT------GA-AGATAACA-AAT
* * *
68324039 CTTATCTCCCTCAAGTTGCAGTGGAGTAGACTCAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAGATAACAAAT
* *
68324084 CTTATCTCTCTAAAGTTGC
1 CTTATCTCCCTGAAGTTGC
68324103 GGCAGAGCAG
Statistics
Matches: 284, Mismatches: 72, Indels: 60
0.68 0.17 0.14
Matches are distributed among these distances:
41 1 0.00
42 34 0.12
43 33 0.12
44 36 0.13
45 104 0.37
46 9 0.03
47 2 0.01
48 1 0.00
50 2 0.01
51 27 0.10
52 30 0.11
53 1 0.00
55 1 0.00
56 1 0.00
57 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGTAGATGAAGATAACAAAT
Found at i:68323863 original size:131 final size:132
Alignment explanation
Indices: 68323672--68323961 Score: 325
Period size: 131 Copynumber: 2.2 Consensus size: 132
68323662 ATTACAGTGC
* * * * * *
68323672 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGATGAAGATAACAAATCTCTTCTCCCTGAAGTTACA
1 CTTATCTCCCTGAACTTGCAGTGGAATAGAACGAAAATAACAAATCTCTTCCCCCTGAAGTTACA
68323737 GT-GGAGTAGATTAAAGC-CAAGTCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAGTTACA
66 GTAGG-GTAGATTAAAGCACAAGTCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAGTTACA
68323800 GAT
130 GAT
* * * *
68323803 CTTATCTCCCTGAACTTGCAGTTGAATAGAACGAAAATAGCAAA-CTTTATCCCCCTGAAGTTGC
1 CTTATCTCCCTGAACTTGCAGTGGAATAGAACGAAAATAACAAATCTCT-TCCCCCTGAAGTTAC
* * * ** * * *
68323867 AGTAGGGTAGGTTGAAGCACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGC
65 AGTAGGGTAGATTAAAGCACAAGTCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAGTTA-C
*
68323932 AAAT
129 AGAT
* * **
68323936 CTCATTTCCCTGAACTAACAGTGGAA
1 CTTATCTCCCTGAACTTGCAGTGGAA
68323962 CAGATTGAAG
Statistics
Matches: 131, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
130 3 0.02
131 63 0.48
132 40 0.31
133 25 0.19
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (132 bp):
CTTATCTCCCTGAACTTGCAGTGGAATAGAACGAAAATAACAAATCTCTTCCCCCTGAAGTTACA
GTAGGGTAGATTAAAGCACAAGTCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAGTTACAG
AT
Found at i:68325054 original size:15 final size:14
Alignment explanation
Indices: 68325025--68325051 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68325015 CCCTTTTATT
68325025 TCATTTTATTTTTA
1 TCATTTTATTTTTA
68325039 TCATTTTATTTTT
1 TCATTTTATTTTT
68325052 TATTTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (14 bp):
TCATTTTATTTTTA
Found at i:68329638 original size:40 final size:40
Alignment explanation
Indices: 68329568--68329741 Score: 246
Period size: 40 Copynumber: 4.4 Consensus size: 40
68329558 AAACCAAGTA
* * * * *
68329568 CCTTCGAGATTTAGCC-GGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCTAGATATAG-TAACTCGCACAAATG
*
68329607 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
*
68329647 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
68329687 CCTTCGGGACTTAGCCTAGATATAG-AACTCGCACAAATG
1 CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
*
68329726 CCTTTGGGACTTAGCC
1 CCTTCGGGACTTAGCC
68329742 CGGTTATCAT
Statistics
Matches: 125, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 44 0.35
40 81 0.65
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
Found at i:68337548 original size:40 final size:40
Alignment explanation
Indices: 68337467--68337682 Score: 355
Period size: 40 Copynumber: 5.4 Consensus size: 40
68337457 AAACCAAGTA
* * * *
68337467 CCTTCGGGATTTAG-CTGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
68337506 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68337546 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68337586 CCTTCGGGACTGAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68337626 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68337666 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
68337683 AGTTATCATC
Statistics
Matches: 167, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68340042 original size:46 final size:46
Alignment explanation
Indices: 68339891--68340106 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
68339881 TGTTTGAGCT
* * * *
68339891 AGTGTAAGACATGTCTGGGACATGCATCGACCAT--ATTATGTGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GATGTAAGCC
* * * * ** *
68339937 AGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGGCG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
*
68339985 AGTGTAA-ACATGTTTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* *
68340030 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
*
68340074 AGTGTAAGACCATGTCTAGGACAATGCATCGGC
1 AGTGTAAGA-CATGTCTGGGAC-ATGCATCGGC
68340107 ACCTTACCCC
Statistics
Matches: 139, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
44 11 0.08
45 35 0.25
46 59 0.42
47 15 0.11
48 18 0.13
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:68352468 original size:29 final size:30
Alignment explanation
Indices: 68352416--68352472 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
68352406 TGCAAGCGAC
*
68352416 ACACACCCGTGTGTCCAGGCCGTGTGAGGG
1 ACACACCCGTGTCTCCAGGCCGTGTGAGGG
*
68352446 ACACGCCCGTGTCT-CAGGCCGTGTGAG
1 ACACACCCGTGTCTCCAGGCCGTGTGAG
68352473 CATTTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.18
Consensus pattern (30 bp):
ACACACCCGTGTCTCCAGGCCGTGTGAGGG
Found at i:68356386 original size:82 final size:81
Alignment explanation
Indices: 68356270--68356425 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
68356260 AAATTGTACA
* * * *
68356270 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
68356334 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68356351 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
68356416 TGCGAGTTGA
65 TGCGAATTGA
68356426 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68356393 original size:55 final size:52
Alignment explanation
Indices: 68356269--68356422 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
68356259 TAAATTGTAC
* *
68356269 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
68356322 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
68356377 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
68356423 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:68356427 original size:27 final size:27
Alignment explanation
Indices: 68356270--68356425 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
68356260 AAATTGTACA
*
68356270 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
68356297 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
68356324 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
68356351 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
68356379 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
68356406 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
68356426 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:68356436 original size:27 final size:27
Alignment explanation
Indices: 68356262--68356446 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
68356252 GCGGGATTAA
*
68356262 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
68356289 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
68356316 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
68356343 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
68356371 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
68356398 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
68356425 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
68356447 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:68356437 original size:82 final size:81
Alignment explanation
Indices: 68356262--68356446 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
68356252 GCGGGATTAA
* * * *
68356262 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
68356327 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
68356343 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
68356407 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
68356425 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
68356447 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:68359298 original size:25 final size:25
Alignment explanation
Indices: 68359276--68359501 Score: 188
Period size: 25 Copynumber: 9.1 Consensus size: 25
68359266 CTAAAAAGTA
68359276 TTTGTGGTGAATTCTCTGGAAAGCC
1 TTTGTGGTGAATTCTCTGGAAAGCC
* ** *
68359301 TTTATCATGAA-TCTTCTGAAAAGCC
1 TTTGTGGTGAATTC-TCTGGAAAGCC
* ** * *
68359326 TTTATGGAAAATTCTCTGTAAATCC
1 TTTGTGGTGAATTCTCTGGAAAGCC
* **
68359351 TTTGTGGCGAA-TCTTCTAAAAAGCC
1 TTTGTGGTGAATTC-TCTGGAAAGCC
*
68359376 TTTGTGGTGAATTCTCTGGAAAGCT
1 TTTGTGGTGAATTCTCTGGAAAGCC
* * * *
68359401 TTTATGGTGAA-TCTTTAGAAAGGC
1 TTTGTGGTGAATTCTCTGGAAAGCC
* *
68359425 TTTGTGGTAAATTCTCTGGAAAGGC
1 TTTGTGGTGAATTCTCTGGAAAGCC
* *
68359450 TTTGTGGTAAATTCTCTCGAAAGCC
1 TTTGTGGTGAATTCTCTGGAAAGCC
** * *
68359475 TTTGCAGCGAATTCTCAGGAAAGCC
1 TTTGTGGTGAATTCTCTGGAAAGCC
68359500 TT
1 TT
68359502 CATGGCGTGT
Statistics
Matches: 159, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
24 22 0.14
25 133 0.84
26 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (25 bp):
TTTGTGGTGAATTCTCTGGAAAGCC
Found at i:68359496 original size:99 final size:100
Alignment explanation
Indices: 68359284--68359501 Score: 244
Period size: 99 Copynumber: 2.2 Consensus size: 100
68359274 TATTTGTGGT
* *
68359284 GAATTCTCTGGAAAGCCTTTATCATGAATCTTCTGAAAAGCCTTTATGGAAAATTCTCTGTAAAT
1 GAATTCTCTGGAAAGCCTTTATCATGAATCTTCTGAAAAGCCTTTATGGAAAATTCTCTGGAAAG
* ** *
68359349 CCTTTGTGGCGAATCTTCTAAAAAGCCTTTGTGGT
66 CCTTTGTGGCAAATCTTCTAAAAAGCCTTTGCAGC
* ** * * *
68359384 GAATTCTCTGGAAAGCTTTTATGGTGAATCTT-T-AGAAAGGCTTTGTGGTAAATTCTCTGGAAA
1 GAATTCTCTGGAAAGCCTTTATCATGAATCTTCTGA-AAAGCCTTTATGGAAAATTCTCTGGAAA
* * **
68359447 GGCTTTGTGGTAAAT-TCTCTCGAAAGCCTTTGCAGC
65 GCCTTTGTGGCAAATCT-TCTAAAAAGCCTTTGCAGC
*
68359483 GAATTCTCAGGAAAGCCTT
1 GAATTCTCTGGAAAGCCTT
68359502 CATGGCGTGT
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
98 2 0.02
99 67 0.68
100 29 0.30
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (100 bp):
GAATTCTCTGGAAAGCCTTTATCATGAATCTTCTGAAAAGCCTTTATGGAAAATTCTCTGGAAAG
CCTTTGTGGCAAATCTTCTAAAAAGCCTTTGCAGC
Found at i:68365421 original size:27 final size:26
Alignment explanation
Indices: 68365386--68365494 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
68365376 AGCATGGCTG
*
68365386 CCAGAACAGATAATGTGAG-AGAGTCA
1 CCAGAACAGATAATGTG-GCAGAGCCA
68365412 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
68365440 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
68365467 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
68365494 C
1 C
68365495 TAGGACGCTT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.08
27 50 0.69
28 16 0.22
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:68365478 original size:54 final size:54
Alignment explanation
Indices: 68365386--68365494 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
68365376 AGCATGGCTG
* *
68365386 CCAGAACAGATAATGTGAGAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGAGAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
68365440 CCAGAACAGAAATATGTG-GCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGAG-AGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
68365494 C
1 C
68365495 TAGGACGCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGAGAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:68365935 original size:16 final size:15
Alignment explanation
Indices: 68365914--68365943 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
68365904 AAGATACCAA
68365914 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
68365930 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
68365944 CCGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:68366941 original size:24 final size:24
Alignment explanation
Indices: 68366914--68366960 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
68366904 CTAGATTTCC
68366914 TCCCTTATCTG-CTCCTAAATCCTA
1 TCCCTTATC-GACTCCTAAATCCTA
68366938 TCCCTTATCGACTCCTAAATCCT
1 TCCCTTATCGACTCCTAAATCCT
68366961 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TCCCTTATCGACTCCTAAATCCTA
Found at i:68371121 original size:27 final size:26
Alignment explanation
Indices: 68371084--68371195 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
68371074 AGCATGGCTG
* *
68371084 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
68371110 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
68371138 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
68371165 CCAGATCAGATAATGGTGGCATAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
68371192 CCAG
1 CCAG
68371196 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:68371176 original size:54 final size:54
Alignment explanation
Indices: 68371084--68371195 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
68371074 AGCATGGCTG
* *
68371084 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
68371138 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATGGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
68371192 CCAG
1 CCAG
68371196 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.14
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:68372640 original size:24 final size:24
Alignment explanation
Indices: 68372613--68372659 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
68372603 CTAGATTTCC
**
68372613 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
68372637 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
68372660 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:68374144 original size:75 final size:74
Alignment explanation
Indices: 68374003--68374148 Score: 256
Period size: 75 Copynumber: 2.0 Consensus size: 74
68373993 AGAACGCATA
* * *
68374003 GAAGTCCATGATCACCAACTTTGGCACATCTTGCATTGAGTCTTAATCACTTCCCCCCTCACCAA
1 GAAGTCCACGATCACCAACTTTGGCACATCTGGCATTAAGTCTTAATCACTTCCCCCCTCACCAA
68374068 CTCATCGTC
66 CTCATCGTC
68374077 GAAGTCCACGATCACCAACTTTGGCACATCCTGGCATTAAGTCTTAATCACTTCCCCCCTCACCA
1 GAAGTCCACGATCACCAACTTTGGCACAT-CTGGCATTAAGTCTTAATCACTTCCCCCCTCACCA
68374142 ACTCATC
65 ACTCATC
68374149 CGGTTCGCTC
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
74 28 0.41
75 40 0.59
ACGTcount: A:0.25, C:0.36, G:0.12, T:0.27
Consensus pattern (74 bp):
GAAGTCCACGATCACCAACTTTGGCACATCTGGCATTAAGTCTTAATCACTTCCCCCCTCACCAA
CTCATCGTC
Found at i:68377741 original size:13 final size:13
Alignment explanation
Indices: 68377719--68377751 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
68377709 AAGGATTTGT
68377719 TTAT-TAAACTAA
1 TTATCTAAACTAA
68377731 TTATCTAAACTAA
1 TTATCTAAACTAA
*
68377744 TTAACTAA
1 TTATCTAA
68377752 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:68380327 original size:43 final size:44
Alignment explanation
Indices: 68380211--68380362 Score: 181
Period size: 43 Copynumber: 3.5 Consensus size: 44
68380201 TATGTGTTAT
* * * *
68380211 GACCATGTCTGGGACGTTGGCATCGACT-TATGATTTACGTGTAA
1 GACCACGTCTAGGATGTTGGCATCGA-TATTTGATTTACGTGTAA
*
68380255 GACCACGTCTAGGACGTTGGCATCG-TATTTGATTT-CGTGTAA
1 GACCACGTCTAGGATGTTGGCATCGATATTTGATTTACGTGTAA
*
68380297 GACC-CTGTCTAGGATAG-TGGCATCGATATTTG-TTTACATGTAA
1 GACCAC-GTCTAGGAT-GTTGGCATCGATATTTGATTTACGTGTAA
68380340 GACCACGTCTAGGATGTTGGCAT
1 GACCACGTCTAGGATGTTGGCAT
68380363 TGTACGATCT
Statistics
Matches: 96, Mismatches: 5, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
41 1 0.01
42 32 0.33
43 39 0.41
44 24 0.25
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
GACCACGTCTAGGATGTTGGCATCGATATTTGATTTACGTGTAA
Found at i:68385934 original size:46 final size:46
Alignment explanation
Indices: 68385884--68386056 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
68385874 TGGTTGAGCA
68385884 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68385930 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
68385975 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68386023 CCTGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68386057 GCGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (46 bp):
TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68386040 original size:93 final size:93
Alignment explanation
Indices: 68385881--68386051 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
68385871 GGATGGTTGA
* * * *
68385881 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCATTGAGT
68385946 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
68385974 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCATTGAGT
*
68386039 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
68386052 ACTTAGCGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:68390362 original size:7 final size:7
Alignment explanation
Indices: 68390352--68390437 Score: 50
Period size: 7 Copynumber: 11.9 Consensus size: 7
68390342 GGTTTAAGGT
68390352 TTAGGGG
1 TTAGGGG
68390359 TTAGGGG
1 TTAGGGG
* *
68390366 TTAAGAG
1 TTAGGGG
*
68390373 TTAGGTGT
1 TTAGG-GG
68390381 TTAGGGG
1 TTAGGGG
*
68390388 TTTA-TGG
1 -TTAGGGG
*
68390395 TTAAGGGT
1 TT-AGGGG
*
68390403 TTAGGGT
1 TTAGGGG
68390410 TTAGGGG
1 TTAGGGG
*
68390417 ATAGTGGG
1 TTAG-GGG
68390425 -TAGGGG
1 TTAGGGG
68390431 TTTAGGG
1 -TTAGGG
68390438 TTTAAATTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
6 5 0.08
7 37 0.61
8 19 0.31
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.35
Consensus pattern (7 bp):
TTAGGGG
Found at i:68390388 original size:29 final size:29
Alignment explanation
Indices: 68390343--68390441 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 29
68390333 ATAGCTTGGG
*
68390343 GTTTAAGGTTTAGGGGTTAGGGGTTAAGA
1 GTTTAGGGTTTAGGGGTTAGGGGTTAAGA
* *
68390372 G-TTAGGTGTTTAGGGGTTTA-TGGTTAAGG
1 GTTTAGG-GTTTAGGGG-TTAGGGGTTAAGA
* * *
68390401 GTTTAGGGTTTAGGGGATAGTGGG-TAGGG
1 GTTTAGGGTTTAGGGGTTAG-GGGTTAAGA
68390430 GTTTAGGGTTTA
1 GTTTAGGGTTTA
68390442 AATTAAGTAG
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
28 6 0.10
29 43 0.73
30 10 0.17
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.37
Consensus pattern (29 bp):
GTTTAGGGTTTAGGGGTTAGGGGTTAAGA
Found at i:68390397 original size:22 final size:21
Alignment explanation
Indices: 68390340--68390412 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 21
68390330 CTAATAGCTT
*
68390340 GGGGTTTAAGGTTTAGGGGTTA
1 GGGGTTTAAGG-TTAGGGTTTA
68390362 GGGG-TTAAGAGTTAGGTGTTTA
1 GGGGTTTAAG-GTTAGG-GTTTA
*
68390384 GGGGTTTATGGTTAAGGGTTTA
1 GGGGTTTAAGGTT-AGGGTTTA
68390406 -GGGTTTA
1 GGGGTTTA
68390413 GGGGATAGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
21 17 0.38
22 21 0.47
23 7 0.16
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.38
Consensus pattern (21 bp):
GGGGTTTAAGGTTAGGGTTTA
Found at i:68390404 original size:14 final size:14
Alignment explanation
Indices: 68390341--68390439 Score: 56
Period size: 14 Copynumber: 6.9 Consensus size: 14
68390331 TAATAGCTTG
* *
68390341 GGGTTTAAGGTTTA
1 GGGTTTAGGGTTAA
*
68390355 GGGGTTAGGGGTTAA
1 GGGTTTA-GGGTTAA
* *
68390370 GAG-TTAGGTGTTTAG
1 GGGTTTAGG-G-TTAA
*
68390385 GGGTTTATGGTTAA
1 GGGTTTAGGGTTAA
*
68390399 GGGTTTAGGGTTTA
1 GGGTTTAGGGTTAA
** * *
68390413 GGGGATAGTGGGTAG
1 GGGTTTAG-GGTTAA
68390428 GGGTTTAGGGTT
1 GGGTTTAGGGTT
68390440 TAAATTAAGT
Statistics
Matches: 62, Mismatches: 18, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
13 2 0.03
14 34 0.55
15 22 0.35
16 4 0.06
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (14 bp):
GGGTTTAGGGTTAA
Found at i:68397404 original size:35 final size:35
Alignment explanation
Indices: 68397336--68397404 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
68397326 TAATTGTGTT
*
68397336 ATTAATTTATTATTTTAGATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAGATTCTAAATTAAAATTC
* * *
68397371 ATTAATTT-TTATATTTAGTTTTTAAGTTAAAATT
1 ATTAATTTATTAT-TTTAGATTCTAAATTAAAATT
68397405 TTAATAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (35 bp):
ATTAATTTATTATTTTAGATTCTAAATTAAAATTC
Found at i:68397690 original size:43 final size:43
Alignment explanation
Indices: 68397536--68397762 Score: 235
Period size: 43 Copynumber: 5.3 Consensus size: 43
68397526 AATATTTTTT
* * * * * *
68397536 TAAATGTCATGTTCTTTAGTGGTGTTTATGGGAAAAGTG-CGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGC
* * * **
68397578 TAAAGG-CCTGTTCTATAGTGGCGTTTGTGGCAAAAATGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGC
* * * *
68397620 TAAAGGT-TTGTTCTATAGCGGCATTTGTGGCAAAAACGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGC
* *
68397662 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCAGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGC
* * * * *
68397705 TAAAGGCCATGTTCTTTAGCAGCATTTGTTGTAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGC
68397748 TAAAGGTCATGTTCT
1 TAAAGGTCATGTTCT
68397763 ATAACGGCAT
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
41 26 0.16
42 52 0.33
43 80 0.51
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGC
Found at i:68398191 original size:43 final size:42
Alignment explanation
Indices: 68398081--68398193 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
68398071 TGTGTTATCG
* *
68398081 TGTAAGACCACGTCTGGGACG-TCGGCATCATATTTGATTTCG
1 TGTAAGACCACGTCTGGGATGAT-GGCATCATATTTGATTTCA
* *
68398123 TGTAAGACC-CTGTCTAGGATAATGGCATCGATATTTG-TTTACA
1 TGTAAGACCAC-GTCTGGGATGATGGCATC-ATATTTGATTT-CA
*
68398166 TGTAAGACCACATCTGGGATGATGGCAT
1 TGTAAGACCACGTCTGGGATGATGGCAT
68398194 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 32 0.54
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATGATGGCATCATATTTGATTTCA
Found at i:68404559 original size:96 final size:96
Alignment explanation
Indices: 68404388--68404582 Score: 322
Period size: 96 Copynumber: 2.0 Consensus size: 96
68404378 AGGACAGTTA
68404388 CGAATGAAATGATCTAATGATCCACATTTAGAAAAGGCCCGATCATTCAATCTACAATCACCGAT
1 CGAATGAAATGATCTAATGATCCACATTTAGAAAAGGCCCGATCATTCAATCTACAATCACCGAT
*
68404453 ATATCGTTTTCCACACTGTCTACATTCAGGT
66 ATATCATTTTCCACACTGTCTACATTCAGGT
68404484 CGAATGAAATGATCTAATGATCCACATTTA-AAACAGGCCCGATCATTCAATCTACAATCACCGA
1 CGAATGAAATGATCTAATGATCCACATTTAGAAA-AGGCCCGATCATTCAATCTACAATCACCGA
* * *
68404548 TAT-GCTATTTTCTACACTGTCTATATTCAGGT
65 TATATC-ATTTTCCACACTGTCTACATTCAGGT
68404580 CGA
1 CGA
68404583 TTTGGTTTCA
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
95 4 0.04
96 89 0.96
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (96 bp):
CGAATGAAATGATCTAATGATCCACATTTAGAAAAGGCCCGATCATTCAATCTACAATCACCGAT
ATATCATTTTCCACACTGTCTACATTCAGGT
Done.