Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 205 of 320
Found at i:68407279 original size:43 final size:43
Alignment explanation
Indices: 68407223--68407358 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 43
68407213 CTTGCATGTT
* * * *
68407223 ATCACATATTGATGCTACTGTCCTAGACAGGGTCTTATACGAA
1 ATCACATAATGATGCTAATGTCCCAGACAGGGTCTTACACGAA
* * *
68407266 ATCATATAATGATGCTAATGTCCCAGACATGGTCTTACACGTA
1 ATCACATAATGATGCTAATGTCCCAGACAGGGTCTTACACGAA
* * * * *
68407309 ATCACAATACA--ATGCCAATGTCCTAGACATGGTCTTACATGTA
1 ATCAC-ATA-ATGATGCTAATGTCCCAGACAGGGTCTTACACGAA
68407352 ATCACAT
1 ATCACAT
68407359 CTCGGTAATC
Statistics
Matches: 80, Mismatches: 11, Indels: 5
0.83 0.11 0.05
Matches are distributed among these distances:
42 2 0.03
43 74 0.93
44 3 0.04
45 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (43 bp):
ATCACATAATGATGCTAATGTCCCAGACAGGGTCTTACACGAA
Found at i:68407971 original size:13 final size:13
Alignment explanation
Indices: 68407953--68407984 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
68407943 AACAACATGT
68407953 CCGTGTGTCTAGC
1 CCGTGTGTCTAGC
68407966 CCGTGTGTCTAGC
1 CCGTGTGTCTAGC
68407979 CCGTGT
1 CCGTGT
68407985 ACCATTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.31, G:0.31, T:0.31
Consensus pattern (13 bp):
CCGTGTGTCTAGC
Found at i:68413056 original size:37 final size:37
Alignment explanation
Indices: 68413006--68413081 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
68412996 TGCTTGTAAC
68413006 TAATATCATAACACTCAGTTACCTTATTGCAAATAAA
1 TAATATCATAACACTCAGTTACCTTATTGCAAATAAA
*
68413043 TAATATCATAACACTCAGTTACCTTGTTGCAAATAAA
1 TAATATCATAACACTCAGTTACCTTATTGCAAATAAA
68413080 TA
1 TA
68413082 CTAAAGTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (37 bp):
TAATATCATAACACTCAGTTACCTTATTGCAAATAAA
Found at i:68421816 original size:13 final size:13
Alignment explanation
Indices: 68421798--68421822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68421788 CCGACAGGGG
68421798 CACGCCCGTGTGA
1 CACGCCCGTGTGA
68421811 CACGCCCGTGTG
1 CACGCCCGTGTG
68421823 GAGTGGCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:68426657 original size:27 final size:27
Alignment explanation
Indices: 68426627--68426804 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
68426617 ATATTGAGCC
* *
68426627 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
68426654 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68426681 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68426709 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
68426736 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
68426763 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
68426790 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68426805 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68426739 original size:55 final size:54
Alignment explanation
Indices: 68426627--68426804 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
68426617 ATATTGAGCC
* * * * *
68426627 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
68426681 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
68426736 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
68426790 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68426805 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:68434663 original size:27 final size:27
Alignment explanation
Indices: 68434633--68434810 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
68434623 ATATTGAGCC
* *
68434633 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
68434660 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68434687 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68434715 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
68434742 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
68434769 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
68434796 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68434811 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68434745 original size:55 final size:54
Alignment explanation
Indices: 68434633--68434810 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
68434623 ATATTGAGCC
* * * * *
68434633 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
68434687 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
68434742 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
68434796 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68434811 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:68457624 original size:42 final size:42
Alignment explanation
Indices: 68457577--68457660 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
68457567 TCGATGCCAT
68457577 GGTCTTGCTCGCATATCACATATCAGAATTCTATGTCATGAA
1 GGTCTTGCTCGCATATCACATATCAGAATTCTATGTCATGAA
68457619 GGTCTTGCTCGCATATCACATATCAGAATTCTATGTCATGAA
1 GGTCTTGCTCGCATATCACATATCAGAATTCTATGTCATGAA
68457661 ATATGTATCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (42 bp):
GGTCTTGCTCGCATATCACATATCAGAATTCTATGTCATGAA
Found at i:68460851 original size:46 final size:46
Alignment explanation
Indices: 68460728--68460852 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
68460718 ACAAGTCTTG
* *
68460728 TACCCCTGAGTTGCAGTGGGATGGATTCAAGAAGATACAAATCCTA
1 TACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATACAAAGCCTA
* * *
68460774 TACCCCTGAGTTGCAGTGGGATGCATTGAAGATGGTACAAAGCCTA
1 TACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATACAAAGCCTA
* *
68460820 TACCCCTGAGTTACAGTGGGATGGATGGAAGAA
1 TACCCCTGAGTTGCAGTGGGATGGATTGAAGAA
68460853 ACCACAAATT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (46 bp):
TACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATACAAAGCCTA
Found at i:68461271 original size:44 final size:45
Alignment explanation
Indices: 68461223--68461321 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
68461213 GAGGTGGAGT
* *
68461223 AGATTGAAGCCACAG-GTCTTATCTCCCTAAAGTTACAGCAGAAC
1 AGATTAAAGCCACAGAATCTTATCTCCCTAAAGTTACAGCAGAAC
* * * * *
68461267 AGATTAAAGACAGAGAATCTTATTTCCCTAAAGTTGCAGTAGAAC
1 AGATTAAAGCCACAGAATCTTATCTCCCTAAAGTTACAGCAGAAC
68461312 AGATTAAAGC
1 AGATTAAAGC
68461322 TACAAATTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
44 12 0.26
45 34 0.74
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (45 bp):
AGATTAAAGCCACAGAATCTTATCTCCCTAAAGTTACAGCAGAAC
Found at i:68461541 original size:44 final size:43
Alignment explanation
Indices: 68461493--68461595 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 43
68461483 GAAATTACAT
* *
68461493 TGGAGTAGATTGAAGCTAAAATCCTTATCTCTCTGAAGTTGCAG
1 TGGAGTAGATTGAAGC-AAAAGCCTTATCTCCCTGAAGTTGCAG
* **
68461537 TGGAGCAGATTGAAGGCACCAGCCTTATCTCCCTGAAGTTGCAG
1 TGGAGTAGATTGAA-GCAAAAGCCTTATCTCCCTGAAGTTGCAG
* *
68461581 CGGAGTAGACTGAAG
1 TGGAGTAGATTGAAG
68461596 ATAGCGAATC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.02
44 47 0.94
45 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (43 bp):
TGGAGTAGATTGAAGCAAAAGCCTTATCTCCCTGAAGTTGCAG
Found at i:68461779 original size:143 final size:143
Alignment explanation
Indices: 68461516--68461826 Score: 408
Period size: 143 Copynumber: 2.2 Consensus size: 143
68461506 AGCTAAAATC
* * * * * * *
68461516 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGGCACCAGCCTTATCTCCCTGAAGTTGCAG
1 CTTATCTTTCTAAAGTTGCAGTGAACCAAATTGAAGCCACCAGCCTTATCTCCCTGAAATTGCAG
* * * * *
68461581 CGGAGTAGACTGAAGATAGCGAATCTTATTTCCATGAAATTATAGTGGAATAGATTGAAGCTACA
66 CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTACAGTGGAACAGATTGAAGCTACA
68461646 AACTATGGCGGAT
131 AACTATGGCGGAT
* * * *
68461659 CTTATCTTTCTAAAGTTGTAGTGAACCAAATTGGAGCCACTAGCCTTATCTTCCTGAAATTGCAG
1 CTTATCTTTCTAAAGTTGCAGTGAACCAAATTGAAGCCACCAGCCTTATCTCCCTGAAATTGCAG
* * *
68461724 CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCTTGGAATTGCAGTGGAACAGATTGAAGCTACA
66 CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTACAGTGGAACAGATTGAAGCTACA
* *
68461789 AATTATGGTGGAT
131 AACTATGGCGGAT
*
68461802 CTTATCTTCCTGAAA-TTGCAGTGAA
1 CTTATCTTTCT-AAAGTTGCAGTGAA
68461827 GTAGATCGAA
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
143 141 0.98
144 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (143 bp):
CTTATCTTTCTAAAGTTGCAGTGAACCAAATTGAAGCCACCAGCCTTATCTCCCTGAAATTGCAG
CGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTACAGTGGAACAGATTGAAGCTACA
AACTATGGCGGAT
Found at i:68461849 original size:143 final size:143
Alignment explanation
Indices: 68461559--68461866 Score: 393
Period size: 143 Copynumber: 2.2 Consensus size: 143
68461549 AAGGCACCAG
* * * *
68461559 CCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTGAAGATAGCGAATCTTATTTCCATGAAATTAT
1 CCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTAC
* * *
68461624 AGTGGAATAGATTGAAGCTACAAACTATGGCGGATCTTATCTTTCTAAAGTTGTAGTGAACCAAA
66 AGTGGAACAGATTGAAGCTACAAACTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGAACCAAA
* * * *
68461689 TTGGAGCCACTAG
131 TCGAAGCCACAAA
* * * * *
68461702 CCTTATCTTCCTGAAATTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCTTGGAATTGC
1 CCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTAC
* * ** *
68461767 AGTGGAACAGATTGAAGCTACAAATTATGGTGGATCTTATCTTCCTGAAA-TTGCAGTGAAGTAG
66 AGTGGAACAGATTGAAGCTACAAACTATGGCGGATCTTATCTTCCT-AAAGTTGCAGTGAACCAA
**
68461831 ATCGAATTCACAAA
130 ATCGAAGCCACAAA
68461845 CCTTATCTCCCTGAAGTTGCAG
1 CCTTATCTCCCTGAAGTTGCAG
68461867 TGAAATTACC
Statistics
Matches: 139, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
143 136 0.98
144 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (143 bp):
CCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATGTCCATGAAATTAC
AGTGGAACAGATTGAAGCTACAAACTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGAACCAAA
TCGAAGCCACAAA
Found at i:68463672 original size:28 final size:28
Alignment explanation
Indices: 68463641--68463694 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
68463631 TTGTACATTT
* *
68463641 TTATTTCTATTTTATTTTACTTATTTAC
1 TTATTTATATTGTATTTTACTTATTTAC
*
68463669 TTATTTATATTGTATTTTTCTTATTT
1 TTATTTATATTGTATTTTACTTATTT
68463695 GGTGTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (28 bp):
TTATTTATATTGTATTTTACTTATTTAC
Found at i:68476988 original size:16 final size:17
Alignment explanation
Indices: 68476967--68477000 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
68476957 AATGTTAGGG
*
68476967 GCAAAAGTGT-AATTTT
1 GCAAAAGTATGAATTTT
68476983 GCAAAAGTATGAATTTT
1 GCAAAAGTATGAATTTT
68477000 G
1 G
68477001 GACTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (17 bp):
GCAAAAGTATGAATTTT
Found at i:68478330 original size:151 final size:151
Alignment explanation
Indices: 68478057--68478330 Score: 343
Period size: 151 Copynumber: 1.8 Consensus size: 151
68478047 CGGGCGTGTG
* *
68478057 GCTTGGCCGTATGACCTAACTCAGAGAGTTACACGGGCACAGACACGAGCTGGGACACGACCATG
1 GCTTGGCCATATGACCTAACTCAGAGAGTTACACGAGCACAGACACGAGCTGGGACACGACCATG
* * * ** ** * *
68478122 TGACCCTATTTTGATTGTTATATGGCCTAAGACATGGGCGTGTGTCTCAGCTATGTGTATCACAC
66 TGACCCTATTTCGATTGTTAAACGGCCTAAGACACAGGCGTGCATCTCAACCATGTGTATCACAC
68478187 GGCCTGGCATACGGACATGCA
131 GGCCTGGCATACGGACATGCA
* * * * * * *
68478208 GCTTGGCCATGTGACCTAATTTAGAGAGTTACACTAGCA-AGGACACGGGCTGGTACACGGCCAT
1 GCTTGGCCATATGACCTAACTCAGAGAGTTACACGAGCACA-GACACGAGCTGGGACACGACCAT
* * *
68478272 GTGTCCCTATTTCGATTGTTAAACGGCCTGAGACACAGGCGTGCATCTCAACCGTGTGT
65 GTGACCCTATTTCGATTGTTAAACGGCCTAAGACACAGGCGTGCATCTCAACCATGTGT
68478331 GTCAAATAGC
Statistics
Matches: 101, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
150 1 0.01
151 100 0.99
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (151 bp):
GCTTGGCCATATGACCTAACTCAGAGAGTTACACGAGCACAGACACGAGCTGGGACACGACCATG
TGACCCTATTTCGATTGTTAAACGGCCTAAGACACAGGCGTGCATCTCAACCATGTGTATCACAC
GGCCTGGCATACGGACATGCA
Found at i:68490922 original size:40 final size:40
Alignment explanation
Indices: 68490878--68491049 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
68490868 GGACTAAGAT
*
68490878 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
68490918 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * ** *
68490958 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
68490998 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
68491037 CCGAAGGCATTTG
1 CCGAAGGCATTTG
68491050 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.28
40 80 0.69
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:68490963 original size:80 final size:79
Alignment explanation
Indices: 68490878--68491049 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
68490868 GGACTAAGAT
*
68490878 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
68490942 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
68490958 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
68491023 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
68491037 CCGAAGGCATTTG
1 CCGAAGGCATTTG
68491050 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:68491067 original size:79 final size:80
Alignment explanation
Indices: 68490905--68491082 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
68490895 AGATACAAAT
* * * *
68490905 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
68490970 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
68490985 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
68491049 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
68491064 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68491083 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:68498867 original size:40 final size:40
Alignment explanation
Indices: 68498823--68498994 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
68498813 GGACTAAGAT
*
68498823 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
68498863 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * ** *
68498903 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
68498943 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
68498982 CCGAAGGCATTTG
1 CCGAAGGCATTTG
68498995 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.28
40 80 0.69
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:68498908 original size:80 final size:79
Alignment explanation
Indices: 68498823--68498994 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
68498813 GGACTAAGAT
*
68498823 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
68498887 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
68498903 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
68498968 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
68498982 CCGAAGGCATTTG
1 CCGAAGGCATTTG
68498995 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:68499012 original size:79 final size:80
Alignment explanation
Indices: 68498850--68499027 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
68498840 AGATACAAAT
* * * *
68498850 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
68498915 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
68498930 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
68498994 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
68499009 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68499028 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:68508516 original size:45 final size:43
Alignment explanation
Indices: 68508467--68508643 Score: 182
Period size: 45 Copynumber: 4.0 Consensus size: 43
68508457 TAGGATTTTG
68508467 ATATGTATTTCTGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATG-ATTTC-GAGTAAGACCATGTCTGGGACGTTGGCATCGAT
* *
68508512 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATA--TGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * * *
68508557 ATACATGGTTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T
1 AT--ATGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * *
68508601 AT-TAGA-TTCGAGTAAGACCCTGTTTGGGAAGTT-GCATCGAT
1 ATAT-GATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
68508642 AT
1 AT
68508644 GAGATAGCAT
Statistics
Matches: 114, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
40 6 0.05
41 25 0.22
42 1 0.01
44 3 0.03
45 72 0.63
46 4 0.04
47 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
ATATGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATCGAT
Found at i:68509473 original size:6 final size:6
Alignment explanation
Indices: 68509457--68509706 Score: 176
Period size: 6 Copynumber: 41.0 Consensus size: 6
68509447 AGATTGGAAC
* *
68509457 CAGAAT GAGAAT TAGAAT CAGAAT CAGTAA- CAGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAG-AAT CAGAAT CAGAAT CAGAAT
* * * *
68509505 CA-ATAT TAGTAA- CAGAAT CAGAAT CAAAAT CAGAAT TAG-GT GACAGAAT
1 CAGA-AT CAG-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT
* * * * *
68509554 TAGAAT CAGAAT CAGCAA- CAAAAT CAGAAT CAGAAT TAGTAT TAGTAA-
1 CAGAAT CAGAAT CAG-AAT CAGAAT CAGAAT CAGAAT CAGAAT CAG-AAT
* *
68509602 CAGAAT CAGAAT CAGAAT CAGAAT TACGTGA- CAGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* * *
68509651 CAG-GT GACAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT
1 CAGAAT --CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
68509701 CAGAAT
1 CAGAAT
68509707 GTGAATGCAA
Statistics
Matches: 193, Mismatches: 29, Indels: 44
0.73 0.11 0.17
Matches are distributed among these distances:
5 14 0.07
6 158 0.82
7 16 0.08
8 5 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:68509554 original size:85 final size:85
Alignment explanation
Indices: 68509464--68509702 Score: 370
Period size: 85 Copynumber: 2.8 Consensus size: 85
68509454 AACCAGAATG
*
68509464 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
68509529 CAAAATCAGAATTAGGTGAC
66 CAAAATCAGAATTACGTGAC
* * *
68509549 AGAATTAGAATCAGAATCAGCAACAAAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAAT
1 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
68509614 CAGAATCAGAATTACGTGAC
66 CAAAATCAGAATTACGTGAC
* * * *
68509634 AGAATCAGAATCAGAATCAGGTGACAGAATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AGAATTAGAATCAGAATCA-GTAACAGAATCAGAATCAGAATCAGTATTA-GTAACAGAATCAGA
68509699 ATCA
64 ATCA
68509703 GAATGTGAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
85 97 0.70
86 25 0.18
87 17 0.12
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAAAATCAGAATTACGTGAC
Found at i:68509692 original size:25 final size:25
Alignment explanation
Indices: 68509523--68509703 Score: 125
Period size: 25 Copynumber: 6.8 Consensus size: 25
68509513 GTAACAGAAT
* * *
68509523 CAGAATCAAAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
68509548 CAGAATTAGAATCAGAATCA-GCAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
68509572 CAAAATCAGAATCAGAATTAGTATTAGTAA
1 CAGAATCAGAATCAGAATCAG-----GTAA
*
68509602 CAGAATCAGAATCAGAATCAGAATTACGTGA
1 CAGAATCAGAATCAGAATCAG------GTAA
*
68509633 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
68509658 CAGAATCAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
68509682 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
68509704 AATGTGAATG
Statistics
Matches: 127, Mismatches: 19, Indels: 19
0.77 0.12 0.12
Matches are distributed among these distances:
24 23 0.18
25 55 0.43
26 2 0.02
30 22 0.17
31 25 0.20
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:68509899 original size:27 final size:27
Alignment explanation
Indices: 68509843--68509900 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
68509833 GTGATGAAGT
* * *
68509843 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
68509870 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
68509897 CACC
1 CACC
68509901 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:68510268 original size:27 final size:26
Alignment explanation
Indices: 68510203--68510285 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
68510193 TCGATCGGTC
* * *
68510203 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
68510229 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
68510256 AACAGATATTTGTGGCATACCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68510283 AAC
1 AAC
68510286 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68510586 original size:54 final size:53
Alignment explanation
Indices: 68510486--68510671 Score: 223
Period size: 54 Copynumber: 3.5 Consensus size: 53
68510476 GGCAAAATGG
* * *
68510486 TAATTTTACCCCACAAGGGTATCTCGATAATTTTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGATAA-TTTACCCTACAGGGGTATTTCGA
* * * *
68510540 TATTTCTACCCAACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGATAATT-TACCCTACAGGGGTATTTCGA
* * *
68510594 TAATTCTATCCTATAAGGGTATTTC-AGTAATTTACCCTATAGGGGTATTTCGGA
1 TAATTCTACCCTACAAGGGTATTTCGA-TAATTTACCCTACAGGGGTATTTC-GA
*
68510648 -AATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
68510672 AGTAATTGGT
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
53 41 0.36
54 72 0.64
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (53 bp):
TAATTCTACCCTACAAGGGTATTTCGATAATTTACCCTACAGGGGTATTTCGA
Found at i:68510678 original size:27 final size:26
Alignment explanation
Indices: 68510485--68510678 Score: 192
Period size: 27 Copynumber: 7.2 Consensus size: 26
68510475 GGGCAAAATG
* * * *
68510485 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTCTACCCTACAGGGGTATTTC
*
68510511 GATAATTTTACCCTACAGGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
* * *
68510538 GATATTTCTACCCAACAAGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
*
68510565 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTA-TTTC
* * *
68510593 GTAATTCTATCCTATAAGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
*
68510619 AGTAATT-TACCCTATAGGGGTATTTC
1 -GTAATTCTACCCTACAGGGGTATTTC
*
68510645 GGAAATTCTACCCTACAGGGGTATTTC
1 -GTAATTCTACCCTACAGGGGTATTTC
68510672 AGTAATT
1 -GTAATT
68510679 GGTAAACTAA
Statistics
Matches: 142, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 26 0.18
27 112 0.79
28 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
GTAATTCTACCCTACAGGGGTATTTC
Found at i:68512606 original size:40 final size:41
Alignment explanation
Indices: 68512551--68512701 Score: 168
Period size: 40 Copynumber: 3.8 Consensus size: 41
68512541 GGATATAACT
* * *
68512551 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTAGAGTA
*
68512591 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTAGAGTA
* * *
68512631 ACTCGCACAATTGCCTTTGGGACTTAGCTCGGATT--AGTC
1 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTAGAGTA
* **
68512670 ACTAGTGCAGA-TGCCTTCGGGACTTAGCCCGG
1 ACTCGCACA-ATTGCCTTCGGGACTTAGCCCGG
68512702 TTTTCATCCA
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 28 0.29
40 67 0.69
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (41 bp):
ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:68520460 original size:40 final size:41
Alignment explanation
Indices: 68520405--68520521 Score: 175
Period size: 40 Copynumber: 2.9 Consensus size: 41
68520395 GGATATAACT
* *
68520405 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* *
68520445 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
*
68520485 ACTCGCACAAATGCCTTCGGGACTTGGCCCGGATTAG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAG
68520522 TCACTAGTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
40 66 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:68520538 original size:39 final size:40
Alignment explanation
Indices: 68520412--68520553 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 40
68520402 ACTACTCGCT
* * *
68520412 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* *
68520452 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* * **
68520492 CAAATGCCTTCGGGACTTGGCCCGGA-TTAGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
68520531 CAGATGCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
68520554 AGTTTTCATC
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
39 29 0.33
40 58 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:68534577 original size:43 final size:43
Alignment explanation
Indices: 68534295--68534570 Score: 324
Period size: 43 Copynumber: 6.5 Consensus size: 43
68534285 AATATTTTTT
* * * *
68534295 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGG-AGAGCGTCGC
1 TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * *
68534337 TAAAAGTCATGTTCTATAGTGGCGTTTGT-GGAAAAGCGCCAC
1 TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
* *
68534379 TAAAGGTCTTGTTCTATAACGGCGTTTGTGGG-AAAGACGCCAC
1 TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAG-CGCCGC
* * * *
68534422 TAAAGGTTTTGTTCTATAGCAGCGTTTGTGGGAAAAACGCTGC
1 TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
* *
68534465 TAAAGGTCTTATTCTATAGCGGCGTTTGTGGGAAAAGCACCGC
1 TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * * *
68534508 TAAAAGTTTTGTTCTATAGCGGCGTTTGTGGGAGAAGCACTGC
1 TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
*
68534551 TAAAGGTCATGTTCTATAGC
1 TAAAGGTCTTGTTCTATAGC
68534571 TACGTTTTTC
Statistics
Matches: 200, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
41 2 0.01
42 62 0.31
43 133 0.67
44 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (43 bp):
TAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:68535508 original size:118 final size:118
Alignment explanation
Indices: 68535355--68535591 Score: 420
Period size: 118 Copynumber: 2.0 Consensus size: 118
68535345 TGAATGAATG
*
68535355 TGAATGTTTTATATTTGAAAATGGAAAAGTGTATGAGAAATGTATGTTTAATTGTGTTATAAGTT
1 TGAATGTTTTATATTTGAAAATGGAAAAGTATATGAGAAATGTATGTTTAATTGTGTTATAAGTT
* *
68535420 TGGTAATACTCCGTAACCCTATTATGGCAATGAATATTGGTGAGGGCTGTCCT
66 TGGTAATACTCCATAACCCTATTATGGCAATGAATACTGGTGAGGGCTGTCCT
*
68535473 TGAATGTTTTATATTTGAAAATGGAAAATTATATGAGAAATGTATGTTTAATTGTGTTATAAGTT
1 TGAATGTTTTATATTTGAAAATGGAAAAGTATATGAGAAATGTATGTTTAATTGTGTTATAAGTT
* *
68535538 TGGTAATACTCCATAACCCTATTTTGGCAATGAATACTGGTGAGGGGTGTCCT
66 TGGTAATACTCCATAACCCTATTATGGCAATGAATACTGGTGAGGGCTGTCCT
68535591 T
1 T
68535592 ATGGGGCAAT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 113 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (118 bp):
TGAATGTTTTATATTTGAAAATGGAAAAGTATATGAGAAATGTATGTTTAATTGTGTTATAAGTT
TGGTAATACTCCATAACCCTATTATGGCAATGAATACTGGTGAGGGCTGTCCT
Found at i:68537117 original size:24 final size:25
Alignment explanation
Indices: 68537090--68537142 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
68537080 GCCTAGCCTC
68537090 TTTTAAT-AACT-GGGACAAAGCCCT
1 TTTTAATAAACTAGGG-CAAAGCCCT
*
68537114 TTTTGATAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
68537139 TTTT
1 TTTT
68537143 CGGTAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 6 0.23
25 17 0.65
26 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:68537125 original size:25 final size:25
Alignment explanation
Indices: 68537097--68537167 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
68537087 CTCTTTTAAT
68537097 AACTGGGACAAAGCCCTTTTT-GATA
1 AACTGGG-CAAAGCCCTTTTTCGATA
*
68537122 AACTAGGGCAAAGCCCTTTTTCGGTA
1 AACT-GGGCAAAGCCCTTTTTCGATA
* *
68537148 AATTGGGGCATAGCCCTTTT
1 AACT-GGGCAAAGCCCTTTT
68537168 GCACTTTCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
25 17 0.43
26 23 0.57
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
AACTGGGCAAAGCCCTTTTTCGATA
Found at i:68537328 original size:25 final size:25
Alignment explanation
Indices: 68537300--68537348 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
68537290 ATAATTAAAC
* *
68537300 CCTAGGGGTATAACAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
*
68537325 CCTAGGGGCAAAATAGTCATTTTT
1 CCTAGGGGCAAAACAGTCATTTTT
68537349 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:68543988 original size:30 final size:29
Alignment explanation
Indices: 68543916--68543998 Score: 107
Period size: 29 Copynumber: 2.8 Consensus size: 29
68543906 AATCAGTCTC
*
68543916 AACATATACTAGGCCGAAGCCTTTCATTA
1 AACATATACTGGGCCGAAGCCTTTCATTA
68543945 AACGAT-TACTGGGCCGAAGCCTTTCA-TA
1 AAC-ATATACTGGGCCGAAGCCTTTCATTA
*
68543973 ATTCATATCACTGGGCCGAAGCCTTT
1 A-ACATAT-ACTGGGCCGAAGCCTTT
68543999 TCTGTAAACG
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
28 5 0.10
29 24 0.50
30 19 0.40
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (29 bp):
AACATATACTGGGCCGAAGCCTTTCATTA
Found at i:68544243 original size:24 final size:24
Alignment explanation
Indices: 68544216--68544286 Score: 97
Period size: 26 Copynumber: 2.9 Consensus size: 24
68544206 CCTCTTTAAT
68544216 AACTGGGGCAAAGCCCTTTTGATA
1 AACTGGGGCAAAGCCCTTTTGATA
* *
68544240 AACTGGGGCAAAGCCTTTTTTCGGTA
1 AACTGGGGCAAAGCC-CTTTT-GATA
*
68544266 AACTGGGGCATAGCCCTTTTG
1 AACTGGGGCAAAGCCCTTTTG
68544287 CACTTCCTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.39
25 8 0.20
26 17 0.41
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTTGATA
Found at i:68544359 original size:20 final size:20
Alignment explanation
Indices: 68544334--68544380 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
68544324 ATATGAATAC
*
68544334 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAA
*
68544354 ATCATGTGCATATCATTCAA
1 ATCATGTGCATATCATACAA
68544374 ATCATGT
1 ATCATGT
68544381 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAA
Found at i:68544445 original size:25 final size:25
Alignment explanation
Indices: 68544417--68544464 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
68544407 ATAATTAAAC
* * *
68544417 CCTAAGGGTATAACGGTCATTTTTA
1 CCTAAGGGCAAAACAGTCATTTTTA
*
68544442 CCTAGGGGCAAAACAGTCATTTT
1 CCTAAGGGCAAAACAGTCATTTT
68544465 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
CCTAAGGGCAAAACAGTCATTTTTA
Found at i:68546839 original size:18 final size:18
Alignment explanation
Indices: 68546795--68546839 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
68546785 GCCTAGGCCC
*
68546795 AAAACCAAATAAACAAAA
1 AAAACCAAACAAACAAAA
*
68546813 AATAA-CAAACAAAGAAAA
1 AA-AACCAAACAAACAAAA
68546831 AAAACCAAA
1 AAAACCAAA
68546840 ATAAATAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 19 0.83
19 2 0.09
ACGTcount: A:0.78, C:0.16, G:0.02, T:0.04
Consensus pattern (18 bp):
AAAACCAAACAAACAAAA
Found at i:68548139 original size:28 final size:28
Alignment explanation
Indices: 68548108--68548161 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
68548098 TTGTACATTT
* *
68548108 TTATTTCTATTTTATTTTACTTATTTAC
1 TTATTTATATTGTATTTTACTTATTTAC
*
68548136 TTATTTATATTGTATTTTTCTTATTT
1 TTATTTATATTGTATTTTACTTATTT
68548162 GGTGTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (28 bp):
TTATTTATATTGTATTTTACTTATTTAC
Found at i:68559497 original size:46 final size:46
Alignment explanation
Indices: 68559447--68559622 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68559437 TGGTTGAGCA
68559447 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68559493 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68559538 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68559586 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68559623 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68559603 original size:93 final size:93
Alignment explanation
Indices: 68559444--68559615 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68559434 GGATGGTTGA
* *
68559444 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68559509 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68559537 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68559602 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68559616 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68571597 original size:19 final size:20
Alignment explanation
Indices: 68571573--68571612 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
68571563 TTGTCCCAAT
*
68571573 TTTAACATTCA-AATTTACA
1 TTTAACATTCACAATATACA
68571592 TTTAACATTCACAATATACA
1 TTTAACATTCACAATATACA
68571612 T
1 T
68571613 ATTTCAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTAACATTCACAATATACA
Found at i:68574556 original size:27 final size:27
Alignment explanation
Indices: 68574525--68574582 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
68574515 ACCCTCTAAT
68574525 TGATAAAATGACTGTTATGCCCCTATG
1 TGATAAAATGACTGTTATGCCCCTATG
** * *
68574552 TGATAAAATGGTTGTTTTGCCCTTATG
1 TGATAAAATGACTGTTATGCCCCTATG
68574579 TGAT
1 TGAT
68574583 GTATGATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (27 bp):
TGATAAAATGACTGTTATGCCCCTATG
Found at i:68579122 original size:39 final size:39
Alignment explanation
Indices: 68579068--68579146 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
68579058 AGAGTTTGTG
68579068 TTAAAAAATTTACCCATGGATGACATGCATGTGTTTTGA
1 TTAAAAAATTTACCCATGGATGACATGCATGTGTTTTGA
68579107 TTAAAAAATTTACCCATGGATGACATGCATGTGTTTTGA
1 TTAAAAAATTTACCCATGGATGACATGCATGTGTTTTGA
68579146 T
1 T
68579147 GTTTAATGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.37
Consensus pattern (39 bp):
TTAAAAAATTTACCCATGGATGACATGCATGTGTTTTGA
Found at i:68579412 original size:30 final size:30
Alignment explanation
Indices: 68579360--68579418 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
68579350 TATGAGCATT
*
68579360 GGGGCAAAAGTGCAAATATGTGAAAGTTTA
1 GGGGCAAAAGTGAAAATATGTGAAAGTTTA
*
68579390 GGGGTCAAAA-TGAAAATTTGTGAAAGTTT
1 GGGG-CAAAAGTGAAAATATGTGAAAGTTT
68579419 TATTTTTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.39, C:0.05, G:0.29, T:0.27
Consensus pattern (30 bp):
GGGGCAAAAGTGAAAATATGTGAAAGTTTA
Found at i:68580001 original size:43 final size:44
Alignment explanation
Indices: 68579927--68580063 Score: 134
Period size: 51 Copynumber: 3.0 Consensus size: 44
68579917 GAGATATATG
** *
68579927 GCATCCGAGCTCTTTGAGAGGTTTGAATTCATTATGGATGTG-A
1 GCATCCGAGCTCTTTGAGAGGTCCGAGTTCATTATGGATGTGTA
* *
68579970 GCATCCGAGCTCTTTGAGTGGTCCGAGTTCATAATGGATGCAATTCATGTA
1 GCATCCGAGCTCTTTGAGAGGTCCGAGTTCATTATGGATG-------TGTA
*
68580021 ACATCCGAGCT-TGTTGAGAGGTCCGAGTTCATTATGGATGTGT
1 GCATCCGAGCTCT-TTGAGAGGTCCGAGTTCATTATGGATGTGT
68580064 TACATGTTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
43 35 0.45
44 3 0.04
50 3 0.04
51 36 0.47
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (44 bp):
GCATCCGAGCTCTTTGAGAGGTCCGAGTTCATTATGGATGTGTA
Found at i:68583840 original size:15 final size:15
Alignment explanation
Indices: 68583777--68583840 Score: 94
Period size: 15 Copynumber: 4.3 Consensus size: 15
68583767 GTATCGTATA
*
68583777 TTGGATTTCTGTATC
1 TTGGATTTCTTTATC
68583792 TTGGATTTCTTTATC
1 TTGGATTTCTTTATC
68583807 TTGGATTT-TTCTATC
1 TTGGATTTCTT-TATC
*
68583822 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
68583837 TTGG
1 TTGG
68583841 TCTTCTTGTC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.04
15 41 0.91
16 2 0.04
ACGTcount: A:0.12, C:0.11, G:0.17, T:0.59
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:68590963 original size:23 final size:23
Alignment explanation
Indices: 68590933--68590979 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
68590923 TTTTAAGTTG
68590933 TCATCAACCGATCTAGCTATTTC
1 TCATCAACCGATCTAGCTATTTC
*
68590956 TCATCAACCGTTCTAGCTATTTC
1 TCATCAACCGATCTAGCTATTTC
68590979 T
1 T
68590980 ACCATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.30, G:0.09, T:0.38
Consensus pattern (23 bp):
TCATCAACCGATCTAGCTATTTC
Found at i:68593182 original size:46 final size:48
Alignment explanation
Indices: 68592978--68593194 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 48
68592968 ACAACAAGCT
* * *** * * *
68592978 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCAAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTGGCTAAAATATCTCGAGGCC
* * * * * * *
68593027 GATGCATGTCCCAGACATGCCTCACACTAGCT---CTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAAAAT-ATCTCGAGGCC
* * * *
68593073 AATGCCTGTCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAAAATATCTCGAGGCC
* *
68593121 GAAGCATGTCCCAGACATGTCTTACACTGGC-AAACATAT-T-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAAA-ATATCTCGAGGCC
68593167 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
68593195 AGCACACAGA
Statistics
Matches: 138, Mismatches: 25, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.47
47 3 0.02
48 64 0.46
49 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTAAAATATCTCGAGGCC
Found at i:68594653 original size:47 final size:48
Alignment explanation
Indices: 68594568--68594692 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 48
68594558 GACGAGTGCT
* * **
68594568 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAT-ATAAACC
* * *
68594614 AGTGTAAGACCATATCTAGGACATGGCTTCGACT-TGAGATATAAACC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGATATAAACC
* *
68594661 AGTGTAAGACCACGTCTAGGACACGGCATCGA
1 AGTGTAAGACCATGTCTAGGACATGGCATCGA
68594693 TACCTTACCC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 11 0.17
47 47 0.72
48 7 0.11
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGATATAAACC
Found at i:68604028 original size:45 final size:45
Alignment explanation
Indices: 68603972--68604062 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
68603962 GAATTATGTA
* *
68603972 ATCTGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
*
68604017 ATCTGAACTCATTGAGTTATGGTCTGAGTTCGTGATATATGTGAC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
68604062 A
1 A
68604063 CATGTTTTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGAC
Found at i:68611653 original size:25 final size:26
Alignment explanation
Indices: 68611625--68611676 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
68611615 ATCATCCCAA
*
68611625 TTAAA-GGTTCTTTGTGAA-CTTCCCG
1 TTAAATGGTTCATTGT-AAGCTTCCCG
68611650 TTAAATTGGTTCATTGTAAGCTTCCCG
1 TTAAA-TGGTTCATTGTAAGCTTCCCG
68611677 ATAGTGCTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.22
26 2 0.09
27 16 0.70
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (26 bp):
TTAAATGGTTCATTGTAAGCTTCCCG
Found at i:68611768 original size:24 final size:23
Alignment explanation
Indices: 68611715--68611840 Score: 101
Period size: 24 Copynumber: 5.3 Consensus size: 23
68611705 GGCTATCAGA
* *
68611715 AGCTTCCCGATATGGTTCTTTGTG
1 AGCTTCCCGATATGGCTC-TTATG
*
68611739 AACTTCCCGATTATGGCTCTTATG
1 AGCTTCCCGA-TATGGCTCTTATG
* * ** *
68611763 AGCTTCCTGTTATATAGCTCGAATA
1 AGCTTCCCG--ATATGGCTCTTATG
68611788 AGCTTCCCGATA-GGCTCTTTATG
1 AGCTTCCCGATATGGCTC-TTATG
* *
68611811 AGCTTCCCGAAATGGCTCTATGTG
1 AGCTTCCCGATATGGCTCT-TATG
68611835 AGCTTC
1 AGCTTC
68611841 TCGTTATAAG
Statistics
Matches: 80, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
22 4 0.05
23 17 0.21
24 34 0.43
25 24 0.30
26 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (23 bp):
AGCTTCCCGATATGGCTCTTATG
Found at i:68611837 original size:72 final size:73
Alignment explanation
Indices: 68611714--68611856 Score: 186
Period size: 72 Copynumber: 2.0 Consensus size: 73
68611704 TGGCTATCAG
* * *
68611714 AAGCTTCCCGATATGGTTCTTTGTGAACTTCCCGATTATGGCTCTTATGAGCTTC-CTGTTATAT
1 AAGCTTCCCGATATGGCTCTTTATGAACTTCCCGATAATGGCTCTTATGAGCTTCTC-GTTATA-
68611778 A-GCTCGAAT
64 AGGCTCGAAT
* *
68611787 AAGCTTCCCGATA-GGCTCTTTATGAGCTTCCCGA-AATGGCTCTATGTGAGCTTCTCGTTATAA
1 AAGCTTCCCGATATGGCTCTTTATGAACTTCCCGATAATGGCTCT-TATGAGCTTCTCGTTATAA
68611850 GGCTCGA
65 GGCTCGA
68611857 GTGTGTGTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
71 9 0.15
72 39 0.63
73 14 0.23
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (73 bp):
AAGCTTCCCGATATGGCTCTTTATGAACTTCCCGATAATGGCTCTTATGAGCTTCTCGTTATAAG
GCTCGAAT
Found at i:68621622 original size:41 final size:39
Alignment explanation
Indices: 68621564--68621687 Score: 108
Period size: 41 Copynumber: 3.0 Consensus size: 39
68621554 TGGGGATAGC
*
68621564 GATTCAGGCTTTATGCCTAGCATGCTTTGTGCTGGTGTATT
1 GATTCAGGCTTTGTGCCTAGCA-GCTTTGTGC-GGTGTATT
*
68621605 GATTCAGGCTTTGTGCCTAACCAGCTTCATGT-CGGTGTATT
1 GATTCAGGCTTTGTGCCT-AGCAGCTT--TGTGCGGTGTATT
* * * *
68621646 G-TATCAGGCCTTGAGCCTAGCAAGCTTCGTGCCAGTGTATT
1 GAT-TCAGGCTTTGTGCCTAGC-AGCTTTGTG-CGGTGTATT
68621687 G
1 G
68621688 TATCAAGTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
39 2 0.03
40 3 0.04
41 57 0.83
42 4 0.06
43 3 0.04
ACGTcount: A:0.17, C:0.21, G:0.27, T:0.35
Consensus pattern (39 bp):
GATTCAGGCTTTGTGCCTAGCAGCTTTGTGCGGTGTATT
Found at i:68621688 original size:41 final size:41
Alignment explanation
Indices: 68621578--68621692 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 41
68621568 CAGGCTTTAT
* * * * *
68621578 GCCTAGCATGCTTTGTGCTGGTGTATTG-ATTCAGGCTTTGT
1 GCCTAGCAAGCTTCGTGCCGGTGTATTGTA-TCAGGCCTTGA
* * * *
68621619 GCCTAACCAGCTTCATGTCGGTGTATTGTATCAGGCCTTGA
1 GCCTAGCAAGCTTCGTGCCGGTGTATTGTATCAGGCCTTGA
*
68621660 GCCTAGCAAGCTTCGTGCCAGTGTATTGTATCA
1 GCCTAGCAAGCTTCGTGCCGGTGTATTGTATCA
68621693 AGTAACTTGT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
41 58 0.98
42 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.35
Consensus pattern (41 bp):
GCCTAGCAAGCTTCGTGCCGGTGTATTGTATCAGGCCTTGA
Found at i:68629832 original size:22 final size:25
Alignment explanation
Indices: 68629798--68629848 Score: 81
Period size: 22 Copynumber: 2.2 Consensus size: 25
68629788 GATGACATAT
68629798 TTAATATATAAAAAAGAAAT-AA-C
1 TTAATATATAAAAAAGAAATGAATC
68629821 TTAATA-ATAAAAAAGAAATGAATC
1 TTAATATATAAAAAAGAAATGAATC
68629845 TTAA
1 TTAA
68629849 AAAAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.50
23 8 0.31
24 5 0.19
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (25 bp):
TTAATATATAAAAAAGAAATGAATC
Found at i:68629869 original size:14 final size:16
Alignment explanation
Indices: 68629830--68629869 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 16
68629820 CTTAATAATA
68629830 AAAAAGAAATGAATCTT
1 AAAAAGAAAT-AATCTT
68629847 AAAAA-AAAT-AT-TT
1 AAAAAGAAATAATCTT
68629860 AAAAAGAAAT
1 AAAAAGAAAT
68629870 GAAATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 7 0.32
14 6 0.27
16 4 0.18
17 5 0.23
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (16 bp):
AAAAAGAAATAATCTT
Found at i:68629942 original size:13 final size:13
Alignment explanation
Indices: 68629924--68629950 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68629914 GACACCTGTT
68629924 TCCTCCCAAATGG
1 TCCTCCCAAATGG
68629937 TCCTCCCAAATGG
1 TCCTCCCAAATGG
68629950 T
1 T
68629951 GGAAAATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.26
Consensus pattern (13 bp):
TCCTCCCAAATGG
Found at i:68636102 original size:18 final size:18
Alignment explanation
Indices: 68636079--68636113 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
68636069 CTCCATTAAA
68636079 AGTTTTTATT-TACAATAT
1 AGTTTTT-TTGTACAATAT
68636097 AGTTTTTTTGTACAATA
1 AGTTTTTTTGTACAATA
68636114 AAAACTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (18 bp):
AGTTTTTTTGTACAATAT
Found at i:68638107 original size:29 final size:31
Alignment explanation
Indices: 68638075--68638137 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
68638065 TTTTAGCTGT
* *
68638075 ATTTGGCCTTCAACCTATT-AAAAAG-GTT-A
1 ATTTGACCATCAACCT-TTCAAAAAGAGTTGA
68638104 ATTTGACCATCAACCTTTCAAAAAGAGTTGA
1 ATTTGACCATCAACCTTTCAAAAAGAGTTGA
68638135 ATT
1 ATT
68638138 AATTTTTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.07
29 20 0.69
30 3 0.10
31 4 0.14
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (31 bp):
ATTTGACCATCAACCTTTCAAAAAGAGTTGA
Found at i:68639043 original size:29 final size:29
Alignment explanation
Indices: 68639008--68639066 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
68638998 TTATGTCAAA
68639008 TTTAAAGTATAAAGATTAAATCTCAAGTC
1 TTTAAAGTATAAAGATTAAATCTCAAGTC
68639037 TTTAAAGTATAAAGATTAAATCTCAAGTC
1 TTTAAAGTATAAAGATTAAATCTCAAGTC
68639066 T
1 T
68639067 AAGTGTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (29 bp):
TTTAAAGTATAAAGATTAAATCTCAAGTC
Found at i:68645918 original size:39 final size:40
Alignment explanation
Indices: 68645745--68645935 Score: 246
Period size: 40 Copynumber: 4.8 Consensus size: 40
68645735 GGATATAGCT
* *
68645745 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG--TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT--AGTA
*
68645785 ACTCGCACAATTGCCTTCGGGACTTAGCCC-GAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TTAGTA
*
68645825 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
68645865 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
68645904 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
68645936 TTATCATCCA
Statistics
Matches: 135, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
39 34 0.25
40 97 0.72
41 2 0.01
42 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:68655418 original size:47 final size:47
Alignment explanation
Indices: 68655355--68656082 Score: 1084
Period size: 47 Copynumber: 15.6 Consensus size: 47
68655345 TATCACATTT
* * * * * *
68655355 ATACAC-T-TTCACATTCATTACATCGGCCATTAGGCCTTACCTCAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
68655400 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
68655447 ATACACCTGTTCACTTTCATCACA-TGG-CATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
68655492 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
68655539 A-ACACATGTTCACTTTCATCACATTGGCCATTCGGCC-TATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
68655584 ATATACATGTTCACTTTCATCACATTGGCCATTCGACCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
68655631 ATACACATGTTCACATTCATCACATTGGCCATTCGGCC--CTCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
68655676 ATACACATGTT-ACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
68655722 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
68655769 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
68655816 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
68655863 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
68655910 ATACACATGTTCACTTTCATCACATTGG-CATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
68655956 ATACACATGTTCACATTCATCACATTCATCACATTGGCCATTC-GCCCTATCACAC
1 ATACACATGTT--CA--C-T----TTCATCACATTGGCCATTCGGCCTTATCACAC
*
68656011 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
68656058 ATACACATG-TCACATTCATCACATT
1 ATACACATGTTCACTTTCATCACATT
68656083 TATTCAATTA
Statistics
Matches: 626, Mismatches: 37, Indels: 39
0.89 0.05 0.06
Matches are distributed among these distances:
44 25 0.04
45 71 0.11
46 155 0.25
47 328 0.52
48 2 0.00
50 2 0.00
51 2 0.00
53 2 0.00
55 34 0.05
56 5 0.01
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:68655980 original size:9 final size:9
Alignment explanation
Indices: 68655966--68655990 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68655956 ATACACATGT
68655966 TCACATTCA
1 TCACATTCA
68655975 TCACATTCA
1 TCACATTCA
68655984 TCACATT
1 TCACATT
68655991 GGCCATTCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (9 bp):
TCACATTCA
Found at i:68655987 original size:55 final size:56
Alignment explanation
Indices: 68655920--68656082 Score: 215
Period size: 55 Copynumber: 3.1 Consensus size: 56
68655910 ATACACATGT
*
68655920 TCACTTTCATCACATTGG-CATTCGGCCTTATCACACATACACATGTTCACATTCA
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
* *
68655975 TCACATTCATCACATTGGCCATTC-GCCCTATCACACATATACATGTT--CA--C-
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
68656025 T----TTCATCACATTGGCCATTCGGCCTTATCACACATACACATG-TCACATTCA
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
68656076 TCACATT
1 TCACATT
68656083 TATTCAATTA
Statistics
Matches: 92, Mismatches: 5, Indels: 22
0.77 0.04 0.18
Matches are distributed among these distances:
46 20 0.22
47 19 0.21
48 2 0.02
50 2 0.02
51 2 0.02
53 2 0.02
55 40 0.43
56 5 0.05
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (56 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
Found at i:68658820 original size:39 final size:41
Alignment explanation
Indices: 68658741--68658836 Score: 119
Period size: 39 Copynumber: 2.4 Consensus size: 41
68658731 GGATGTCACA
* *
68658741 CTTCGGGACTTAGCCC-GGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGGATCTAGTAACTAGCACAAATGC
* * *
68658781 CTTCGGGACTT-GCCCGGGA-CTAGTCACTAGCGCAGATGC
1 CTTCGGGACTTAGCCCGGGATCTAGTAACTAGCACAAATGC
68658820 CTTC-GGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
68658837 TTATCATCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
38 6 0.12
39 29 0.59
40 14 0.29
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGGATCTAGTAACTAGCACAAATGC
Found at i:68673269 original size:16 final size:16
Alignment explanation
Indices: 68673248--68673278 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
68673238 GGCTGGGAAA
68673248 AACAGACTGCAGATAT
1 AACAGACTGCAGATAT
68673264 AACAGACTGCAGATA
1 AACAGACTGCAGATA
68673279 AGTGATCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.16
Consensus pattern (16 bp):
AACAGACTGCAGATAT
Found at i:68673864 original size:7 final size:7
Alignment explanation
Indices: 68673861--68673899 Score: 62
Period size: 7 Copynumber: 5.6 Consensus size: 7
68673851 AAGTTTTTTA
68673861 TTTTATT
1 TTTTATT
68673868 TTTTA-T
1 TTTTATT
68673874 TTTTATT
1 TTTTATT
68673881 TTTTATT
1 TTTTATT
68673888 TTTTACTT
1 TTTTA-TT
68673896 TTTT
1 TTTT
68673900 GAAGATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.20
7 18 0.60
8 6 0.20
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:68673877 original size:13 final size:13
Alignment explanation
Indices: 68673854--68673890 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
68673844 AAGTTTTAAG
68673854 TTTTTTA-TTTTA
1 TTTTTTATTTTTA
68673866 TTTTTTATTTTTA
1 TTTTTTATTTTTA
68673879 TTTTTTATTTTT
1 TTTTTTATTTTT
68673891 TACTTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:68673877 original size:20 final size:20
Alignment explanation
Indices: 68673854--68673899 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
68673844 AAGTTTTAAG
*
68673854 TTTTTTATTTTATTTTTTA-
1 TTTTTTTTTTTATTTTTTAC
68673873 TTTTTATTTTTTATTTTTTAC
1 TTTTT-TTTTTTATTTTTTAC
68673894 TTTTTT
1 TTTTTT
68673900 GAAGATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 5 0.21
20 14 0.58
21 5 0.21
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTTTTTTATTTTTTAC
Found at i:68674513 original size:22 final size:22
Alignment explanation
Indices: 68674488--68674530 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
68674478 TCTTACATAA
*
68674488 CCATAAATC-ATAATCCTTAAAC
1 CCAT-AATCTATAAACCTTAAAC
68674510 CCATAATCTATAAACCTTAAA
1 CCATAATCTATAAACCTTAAA
68674531 ATAATAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.28
Consensus pattern (22 bp):
CCATAATCTATAAACCTTAAAC
Found at i:68674567 original size:14 final size:14
Alignment explanation
Indices: 68674548--68674574 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68674538 CTCATACACT
68674548 TTAAACCCTAAACC
1 TTAAACCCTAAACC
68674562 TTAAACCCTAAAC
1 TTAAACCCTAAAC
68674575 TATAATGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:68674744 original size:21 final size:21
Alignment explanation
Indices: 68674720--68674762 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
68674710 AAAACATAAG
68674720 CCCTGAA-CCATGAACCCCTAA
1 CCCTGAACCCAT-AACCCCTAA
* *
68674741 CCCTTAACCCCTAACCCCTAA
1 CCCTGAACCCATAACCCCTAA
68674762 C
1 C
68674763 ACTTAAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.30, C:0.49, G:0.05, T:0.16
Consensus pattern (21 bp):
CCCTGAACCCATAACCCCTAA
Found at i:68674749 original size:14 final size:14
Alignment explanation
Indices: 68674732--68674789 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
68674722 CTGAACCATG
68674732 AACCCCTAACCCTT
1 AACCCCTAACCCTT
*
68674746 AACCCCTAACCCCT
1 AACCCCTAACCCTT
* * **
68674760 AACACTTAAATCTT
1 AACCCCTAACCCTT
68674774 AAACCCC-AACCCTT
1 -AACCCCTAACCCTT
68674788 AA
1 AA
68674790 ATGACCTTTA
Statistics
Matches: 33, Mismatches: 10, Indels: 3
0.72 0.22 0.07
Matches are distributed among these distances:
13 2 0.06
14 27 0.82
15 4 0.12
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCCTAACCCTT
Found at i:68674762 original size:7 final size:7
Alignment explanation
Indices: 68674732--68674762 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
68674722 CTGAACCATG
68674732 AACCCCT
1 AACCCCT
*
68674739 AACCCTT
1 AACCCCT
68674746 AACCCCT
1 AACCCCT
68674753 AACCCCT
1 AACCCCT
68674760 AAC
1 AAC
68674763 ACTTAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCCT
Found at i:68675057 original size:40 final size:40
Alignment explanation
Indices: 68674973--68675057 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
68674963 CAAATACATT
* *
68674973 TAAAACAAATATTAAAATAAGAAACAAATAAAAATGATAT
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAATGATAA
* * * *
68675013 TAAAACAATTATTAAAACAATAGACAAATTGAAAAT-ATAA
1 TAAAACAAATATTAAAACAAGAAACAAA-TAAAAATGATAA
68675053 TAAAA
1 TAAAA
68675058 AGTGATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 32 0.84
41 6 0.16
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.24
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAATGATAA
Found at i:68675396 original size:81 final size:80
Alignment explanation
Indices: 68675245--68675491 Score: 316
Period size: 81 Copynumber: 3.0 Consensus size: 80
68675235 ATTATATGAC
* * *
68675245 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGTTCTAGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTTTTTAGCGGCGTTTTACCAAAAGC
68675310 GCCGCTAATGCTCTGGT
65 GCCGCTAATGCTCT-GT
* * *
68675327 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGTTTTTAACGGCGTTTTACCAAAAGTG
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCG
*
68675392 CCGCTAATGTTCTGT
66 CCGCTAATGCTCTGT
* * * * * * *
68675407 TTTTAGAGGCGTTTTAACAAAAAACGCTGCTATTGCTCTATTTTTAGCGGCGTTTTACCAAAAAC
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGC
*
68675472 GCCGCTATTGCT-TCGT
65 GCCGCTAATGCTCT-GT
68675488 TTTT
1 TTTT
68675492 TATAATTTTT
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
80 17 0.12
81 93 0.65
82 34 0.24
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (80 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCG
CCGCTAATGCTCTGT
Found at i:68675493 original size:41 final size:40
Alignment explanation
Indices: 68675245--68675491 Score: 316
Period size: 41 Copynumber: 6.1 Consensus size: 40
68675235 ATTATATGAC
* * *
68675245 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGTTCTAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
68675286 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
*
68675327 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * *
68675367 TTTTAACGGCGTTTTACCAAAAGTGCCGCTAATGTTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * * * * *
68675407 TTTTAGAGGCGTTTTAACAAAAAACGCTGCTATTGCTCTAT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTAATGCTCTGT
* *
68675448 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCT-TCGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
68675488 TTTT
1 TTTT
68675492 TATAATTTTT
Statistics
Matches: 182, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.41
41 106 0.58
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:68679140 original size:35 final size:35
Alignment explanation
Indices: 68679040--68679170 Score: 131
Period size: 35 Copynumber: 3.6 Consensus size: 35
68679030 GGCAAAGTGT
* * **
68679040 GAAATGTAGGTATGGTATCAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
68679075 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
68679115 GAAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
68679151 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
68679171 AATAAGGAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 14
0.80 0.07 0.14
Matches are distributed among these distances:
35 49 0.60
36 2 0.02
39 2 0.02
40 29 0.35
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:68683463 original size:39 final size:39
Alignment explanation
Indices: 68683409--68683528 Score: 231
Period size: 39 Copynumber: 3.1 Consensus size: 39
68683399 AATTATATTA
*
68683409 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68683448 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68683487 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68683526 CCA
1 CCA
68683529 ATGTCTTGAA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:68692992 original size:29 final size:29
Alignment explanation
Indices: 68692950--68693009 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
68692940 GTAAAAGAAG
68692950 TCAGTTATTTTCCCTCTTATGGTTGTTCA
1 TCAGTTATTTTCCCTCTTATGGTTGTTCA
68692979 TCAGTTATTTTCCCTCTTATGGTTGTTCA
1 TCAGTTATTTTCCCTCTTATGGTTGTTCA
68693008 TC
1 TC
68693010 TTACAATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.13, C:0.22, G:0.13, T:0.52
Consensus pattern (29 bp):
TCAGTTATTTTCCCTCTTATGGTTGTTCA
Found at i:68694378 original size:33 final size:33
Alignment explanation
Indices: 68694333--68694421 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 33
68694323 TGAATACTCC
*
68694333 TAATTTGGATGCAAATTAAAGA-TTAACAACTTA
1 TAATTTGAATGCAAATTAAA-ATTTAACAACTTA
* *
68694366 TAATTTGAATGCAACTTAAAATTTAAGAAC-T-
1 TAATTTGAATGCAAATTAAAATTTAACAACTTA
* *
68694397 T-ATTTGAGTGCTAATTAAAATTTAA
1 TAATTTGAATGCAAATTAAAATTTAA
68694422 AGGCTTATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
30 21 0.43
31 1 0.02
32 2 0.04
33 25 0.51
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (33 bp):
TAATTTGAATGCAAATTAAAATTTAACAACTTA
Found at i:68695423 original size:24 final size:24
Alignment explanation
Indices: 68695387--68695435 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
68695377 TACGGGTAAA
* *
68695387 ATCAAGTGATACTAGCCAAAATTT
1 ATCAACTGATACTAACCAAAATTT
*
68695411 ATCAACTGGTACTAACCAAAATTT
1 ATCAACTGATACTAACCAAAATTT
68695435 A
1 A
68695436 CACCTGAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (24 bp):
ATCAACTGATACTAACCAAAATTT
Found at i:68702530 original size:33 final size:33
Alignment explanation
Indices: 68702493--68702560 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
68702483 CCGTGGCCTT
*
68702493 TTATTC-ACATGCCATAACCCAATTATGGTCTTA
1 TTATTCGA-ATGCCATAACCCAACTATGGTCTTA
* * *
68702526 TTATTCGATTGCCATAGCCCAGCTATGGTCTTA
1 TTATTCGAATGCCATAACCCAACTATGGTCTTA
68702559 TT
1 TT
68702561 TGGTAACTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (33 bp):
TTATTCGAATGCCATAACCCAACTATGGTCTTA
Found at i:68714840 original size:20 final size:19
Alignment explanation
Indices: 68714810--68714855 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
68714800 ACTGGGCCTA
68714810 GCCCATATCAACACAGTTG
1 GCCCATATCAACACAGTTG
* *
68714829 GACCCATTTCAATACAGTTG
1 G-CCCATATCAACACAGTTG
68714849 GCCCATA
1 GCCCATA
68714856 ACAAAATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (19 bp):
GCCCATATCAACACAGTTG
Found at i:68719848 original size:72 final size:73
Alignment explanation
Indices: 68719731--68719911 Score: 251
Period size: 72 Copynumber: 2.5 Consensus size: 73
68719721 TTGCCCGCAT
* * * *
68719731 TTGAGCTACTCACGGATTTGTACACAAAGTCAGCA-CTCGGACCCCAAAGCATTATCATG-TAAT
1 TTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCTCGGACCCCAAAGCATTAACATGAT-AT
68719794 GCCTGCTCA
65 GCCTGCTCA
68719803 TTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCT-GGACCCCAAAGCATTAACATGATATG
1 TTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCTCGGACCCCAAAGCATTAACATGATATG
*
68719867 CTTGCTCA
66 CCTGCTCA
** * *
68719875 GCGAGTTACTCACAGGTTTATACACAAAGTCAGTACC
1 TTGAGCTACTCACGGGTTTATACACAAAGTCAGTACC
68719912 CAGACCCACA
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
72 95 0.97
73 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (73 bp):
TTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCTCGGACCCCAAAGCATTAACATGATATG
CCTGCTCA
Found at i:68724892 original size:93 final size:93
Alignment explanation
Indices: 68724782--68724953 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68724772 CGCCCATAAG
* *
68724782 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
68724847 ACAAGCTCGGATGCCTAGTTACGTCTCA
66 ACAAGCTCGGATGCCTAGTTACGTCTCA
* *
68724875 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
68724940 ACGAGTTCGGATGC
66 ACAAGCTCGGATGC
68724954 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACGTCTCA
Found at i:68724950 original size:46 final size:46
Alignment explanation
Indices: 68724775--68724950 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
68724765 TGTAACCCGC
* *
68724775 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
** *
68724821 CCATAAATGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACG--T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TT-CGCAT
* *
68724871 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
68724914 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
68724951 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
46 62 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 1 0.01
51 2 0.02
52 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68732401 original size:93 final size:93
Alignment explanation
Indices: 68732291--68732462 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68732281 CGCCCATAAG
* *
68732291 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
68732356 ACAAGCTCGGATGCCTAGTTACGTCTCA
66 ACAAGCTCGGATGCCTAGTTACGTCTCA
* *
68732384 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
68732449 ACGAGTTCGGATGC
66 ACAAGCTCGGATGC
68732463 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACGTCTCA
Found at i:68732459 original size:46 final size:46
Alignment explanation
Indices: 68732284--68732459 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
68732274 TGTAACCCGC
* *
68732284 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
** *
68732330 CCATAAATGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACG--T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TT-CGCAT
* *
68732380 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
68732423 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
68732460 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
46 62 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 1 0.01
51 2 0.02
52 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68735319 original size:18 final size:19
Alignment explanation
Indices: 68735296--68735343 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
68735286 GTGGAGTAGG
68735296 CCGTGTGG-TTACACATGC
1 CCGTGTGGCTTACACATGC
**
68735314 CCGTGTGGCTTGGACATGC
1 CCGTGTGGCTTACACATGC
*
68735333 CCGTGTAGCTT
1 CCGTGTGGCTT
68735344 GGGACATGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.12, C:0.27, G:0.31, T:0.29
Consensus pattern (19 bp):
CCGTGTGGCTTACACATGC
Found at i:68735332 original size:19 final size:20
Alignment explanation
Indices: 68735308--68735351 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
68735298 GTGTGGTTAC
*
68735308 ACATGCCCGTGTGGCTT-GG
1 ACATGCCCGTGTAGCTTGGG
68735327 ACATGCCCGTGTAGCTTGGG
1 ACATGCCCGTGTAGCTTGGG
68735347 ACATG
1 ACATG
68735352 TCCATGTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.25
Consensus pattern (20 bp):
ACATGCCCGTGTAGCTTGGG
Found at i:68736999 original size:72 final size:72
Alignment explanation
Indices: 68736921--68737088 Score: 205
Period size: 72 Copynumber: 2.3 Consensus size: 72
68736911 ATGGGTCTGG
* * **
68736921 TACACAAAGTTAGCACCC-AGACCCCAAAGCATTATCATG-TAATGCCCGCTCATTGAGCTACTC
1 TACACAAAGTCAGCACCCGAG-CCCCAAAGCATTAACATGAT-ATGCCCGCTCAGCGAGCTACTC
68736984 ACAGGTTTA
64 ACAGGTTTA
* * * *
68736993 TACACAAAGTCAGTACCCGAGCCCCAAAGCATTAACATGATATGCTCGCTCAGCGAGTTACTCAT
1 TACACAAAGTCAGCACCCGAGCCCCAAAGCATTAACATGATATGCCCGCTCAGCGAGCTACTCAC
*
68737058 GGGTTTA
66 AGGTTTA
* *
68737065 TACACAAAGTCAGTACCCGGGCCC
1 TACACAAAGTCAGCACCCGAGCCC
68737089 ACATTACATA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
72 81 0.96
73 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (72 bp):
TACACAAAGTCAGCACCCGAGCCCCAAAGCATTAACATGATATGCCCGCTCAGCGAGCTACTCAC
AGGTTTA
Found at i:68738662 original size:26 final size:26
Alignment explanation
Indices: 68738633--68738740 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
68738623 TGGTAAAAAT
68738633 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
68738659 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68738685 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68738711 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68738737 TGAT
1 TGAT
68738741 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68744592 original size:55 final size:55
Alignment explanation
Indices: 68744526--68744629 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
68744516 GTGCTAATAT
68744526 GCTATATTAATTTTATTTTTATGAGTTTGAATGATTCAAATAATATTTATGGCTA
1 GCTATATTAATTTTATTTTTATGAGTTTGAATGATTCAAATAATATTTATGGCTA
68744581 GCTATATTAATTTTATTTTTATGAGTTTGAATGATTCAAATAATATTTA
1 GCTATATTAATTTTATTTTTATGAGTTTGAATGATTCAAATAATATTTA
68744630 CAAAATTATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.50
Consensus pattern (55 bp):
GCTATATTAATTTTATTTTTATGAGTTTGAATGATTCAAATAATATTTATGGCTA
Found at i:68745635 original size:17 final size:18
Alignment explanation
Indices: 68745602--68745635 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68745592 TCTGAAAGAG
68745602 TTAGTGAGTTAGTGGGAT
1 TTAGTGAGTTAGTGGGAT
*
68745620 TTAGTG-GTTTGTGGGA
1 TTAGTGAGTTAGTGGGA
68745636 GGTTAGGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (18 bp):
TTAGTGAGTTAGTGGGAT
Found at i:68745641 original size:18 final size:18
Alignment explanation
Indices: 68745599--68745641 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
68745589 ATTTCTGAAA
68745599 GAGTTAGTGAGTTAGTGG
1 GAGTTAGTGAGTTAGTGG
* *
68745617 GATTTAGTG-GTTTGTGG
1 GAGTTAGTGAGTTAGTGG
68745634 GAGGTTAG
1 GA-GTTAG
68745642 GATAGATATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (18 bp):
GAGTTAGTGAGTTAGTGG
Found at i:68748153 original size:40 final size:40
Alignment explanation
Indices: 68748108--68748301 Score: 252
Period size: 40 Copynumber: 4.9 Consensus size: 40
68748098 GGATATAGCT
* * *
68748108 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
68748148 ACTCGCACAATTGCCTTCGGGACTTAGCCCGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
68748187 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
68748227 ACTCGCACAAATGCCTTCGGGACTT-GCCCGG-AACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
68748266 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
68748302 CATCCAAATA
Statistics
Matches: 136, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 66 0.49
40 69 0.51
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:68748242 original size:79 final size:79
Alignment explanation
Indices: 68748108--68748300 Score: 264
Period size: 79 Copynumber: 2.4 Consensus size: 79
68748098 GGATATAGCT
* * *
68748108 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCGCACAAATGCCTTCGGGACTT
**
68748173 AGCCC-GATTTAGTA
66 -GCCCGGAACTAGTA
*
68748187 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTAGAGTAACTCGCACAAATGCCTTCGGGACT
*
68748251 TGCCCGGAACTAGTC
65 TGCCCGGAACTAGTA
* * *
68748266 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
68748301 TCATCCAAAT
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
78 6 0.06
79 93 0.92
80 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCGCACAAATGCCTTCGGGACTT
GCCCGGAACTAGTA
Found at i:68756361 original size:39 final size:40
Alignment explanation
Indices: 68756188--68756378 Score: 246
Period size: 40 Copynumber: 4.8 Consensus size: 40
68756178 GGATATAGCT
* *
68756188 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG--TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATT--AGTA
*
68756228 ACTCGCACAATTGCCTTCGGGACTTAGCCC-GAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TTAGTA
*
68756268 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
68756308 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
68756347 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
68756379 TTATCATCCA
Statistics
Matches: 135, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
39 34 0.25
40 97 0.72
41 2 0.01
42 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:68762533 original size:41 final size:41
Alignment explanation
Indices: 68762476--68762585 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
68762466 TAGCGGCGCA
*
68762476 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCGCT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCGCG
* * *
68762517 AAAAACTAAGCAATAGCGGCATTTTTGGTCCAAATGCCGCG
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCGCG
*
68762558 AAAAACTGAGCAATAGCGGCGCTTTTGG
1 AAAAACTGAGCAATAGCGGCGTTTTTGG
68762586 AAAAACGCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCGCG
Found at i:68762616 original size:41 final size:41
Alignment explanation
Indices: 68762571--68762875 Score: 319
Period size: 41 Copynumber: 7.7 Consensus size: 41
68762561 AACTGAGCAA
**
68762571 TAGCGGCGCTTTTGGAAAAACGCTACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * *
68762612 TAGCGGCGCTTTTGGAAAAACACCGCTATTGCTC-A-G---
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * *
68762648 T----GCGCTTTTGGAAAAACGCCGCTATTGCTC-AGATTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * *
68762684 TAGTGGTGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
*
68762725 TAGCGGCGCTTTTGGAAAAAAAGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGG-AAAAACGCCGCTATAGATCGAGGTTT
* *
68762767 TAGCGGCGCTTTTGGAAAAACACCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * * ** *
68762808 TAGCTGCGCTTTTGGAAAAACACCACTAT-TCTC-AGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* *
68762847 TAGCGGCACTTCTGGAAAAACGCCGCTAT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTAT
68762876 TACTCAGTTT
Statistics
Matches: 226, Mismatches: 28, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
32 29 0.13
36 2 0.01
39 30 0.13
40 28 0.12
41 97 0.43
42 40 0.18
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:68762658 original size:32 final size:32
Alignment explanation
Indices: 68762617--68762679 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
68762607 GGTTTTAGCG
68762617 GCGCTTTTGGAAAAACACCGCTATTGCTCAGT
1 GCGCTTTTGGAAAAACACCGCTATTGCTCAGT
*
68762649 GCGCTTTTGGAAAAACGCCGCTATTGCTCAG
1 GCGCTTTTGGAAAAACACCGCTATTGCTCAG
68762680 ATTTTAGTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (32 bp):
GCGCTTTTGGAAAAACACCGCTATTGCTCAGT
Found at i:68762703 original size:72 final size:73
Alignment explanation
Indices: 68762576--68762795 Score: 199
Period size: 72 Copynumber: 2.9 Consensus size: 73
68762566 AGCAATAGCG
* * *
68762576 GCGCTTTTGGAAAAACGCTACTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACACCGCTAT
1 GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACCGCTAT
68762641 TGCTCAGT
66 TGCTCAGT
* * * * * *
68762649 GCGCTTTTGGAAAAACGCCGCTATTGCTC-AGATTTTAGTGGTGCTTTTGAAAAAACGCCGCTAT
1 GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACCGCTAT
* *
68762713 AGATCGAGGTTTT
66 TGCTC-A-G---T
* * * *
68762726 AGCGGCGCTTTTGGAAAAAAAGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACACC
1 ----GCGCTTTTGG-AAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACC
*
68762791 ACTAT
61 GCTAT
68762796 AGATCGAGGT
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
72 33 0.28
73 26 0.22
74 1 0.01
77 1 0.01
81 10 0.09
82 16 0.14
83 29 0.25
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (73 bp):
GCGCTTTTGGAAAAACGCCACTATAGATCGAGATTTTAGCGGCGCTTTTGAAAAAACACCGCTAT
TGCTCAGT
Found at i:68762786 original size:83 final size:81
Alignment explanation
Indices: 68762649--68762875 Score: 278
Period size: 83 Copynumber: 2.8 Consensus size: 81
68762639 ATTGCTCAGT
* * * *
68762649 GCGCTTTTGG-AAAAACGCCGCTATTGCTCAGATTTTAGTGGTGCTTTTGAAAAAACGCCGCTAT
1 GCGCTTTTGGAAAAAAAGCCGCTA-TGCTCAGATTTTAGCGGCGCTTTTGGAAAAACGCCGCTAT
68762713 AGATCGAGGTTTTAGCG
65 AGATCGAGGTTTTAGCG
* * * *
68762730 GCGCTTTTGGAAAAAAAGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACACCACTA
1 GCGCTTTTGGAAAAAAAGCCGCTAT-GCTC-AGATTTTAGCGGCGCTTTTGGAAAAACGCCGCTA
*
68762795 TAGATCGAGGTTTTAGCT
64 TAGATCGAGGTTTTAGCG
* * * * * *
68762813 GCGCTTTTGGAAAAACA-CCACTATTCTCAGTTTTTAGCGGCACTTCTGGAAAAACGCCGCTAT
1 GCGCTTTTGGAAAAAAAGCCGCTATGCTCAGATTTTAGCGGCGCTTTTGGAAAAACGCCGCTAT
68762876 TACTCAGTTT
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
80 30 0.24
81 13 0.10
82 21 0.17
83 61 0.49
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (81 bp):
GCGCTTTTGGAAAAAAAGCCGCTATGCTCAGATTTTAGCGGCGCTTTTGGAAAAACGCCGCTATA
GATCGAGGTTTTAGCG
Found at i:68763692 original size:21 final size:21
Alignment explanation
Indices: 68763662--68763704 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
68763652 ATATATGTTC
68763662 ATGGTCTAGGATTT-AGGATTT
1 ATGGTCTAGGATTTGA-GATTT
*
68763683 ATGGTTTAGGATTTGAGATTT
1 ATGGTCTAGGATTTGAGATTT
68763704 A
1 A
68763705 ATTTTTAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (21 bp):
ATGGTCTAGGATTTGAGATTT
Found at i:68764128 original size:7 final size:7
Alignment explanation
Indices: 68764115--68764170 Score: 76
Period size: 7 Copynumber: 7.6 Consensus size: 7
68764105 AAATCTTCAA
68764115 AAAAATT
1 AAAAATT
*
68764122 GAAAATTT
1 -AAAAATT
68764130 AAAAATT
1 AAAAATT
68764137 AAAAATT
1 AAAAATT
68764144 AAAAATT
1 AAAAATT
68764151 AAAAACTT
1 AAAAA-TT
68764159 AAAAACTT
1 AAAAA-TT
68764167 AAAA
1 AAAA
68764171 TTTTAATATT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 25 0.56
8 20 0.44
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:68764134 original size:8 final size:8
Alignment explanation
Indices: 68764089--68764176 Score: 65
Period size: 8 Copynumber: 10.9 Consensus size: 8
68764079 TTTATATGTT
68764089 AATTTAAA
1 AATTTAAA
*
68764097 AATGATAAA
1 AAT-TTAAA
68764106 AATCTTCAAAA
1 AAT-TT--AAA
* *
68764117 AAATTGAA
1 AATTTAAA
68764125 AATTTAAA
1 AATTTAAA
68764133 AA-TTAAA
1 AATTTAAA
68764140 AA-TTAAA
1 AATTTAAA
68764147 AA-TTAAA
1 AATTTAAA
*
68764154 AACTTAAA
1 AATTTAAA
*
68764162 AACTTAAA
1 AATTTAAA
*
68764170 ATTTTAA
1 AATTTAA
68764177 TATTTAATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
7 21 0.31
8 31 0.46
9 8 0.12
10 2 0.03
11 5 0.07
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (8 bp):
AATTTAAA
Found at i:68764140 original size:22 final size:22
Alignment explanation
Indices: 68764115--68764173 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 22
68764105 AAATCTTCAA
68764115 AAAAATTGAAAATTTAAAAA-TT
1 AAAAATT-AAAATTTAAAAACTT
*
68764137 AAAAATTAAAAATTAAAAACTT
1 AAAAATTAAAATTTAAAAACTT
68764159 AAAAACTTAAAATTT
1 AAAAA-TTAAAATTT
68764174 TAATATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 11 0.33
22 14 0.42
23 8 0.24
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAATTAAAATTTAAAAACTT
Found at i:68770258 original size:42 final size:42
Alignment explanation
Indices: 68770203--68770297 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
68770193 AGGTCATGGT
* * *
68770203 TTTTAGTGACGTTTGCTGGAAGAACGCCACTAAAGACTATGA-
1 TTTTAGCGGCGTTTGCTGGAA-AACGCCACTAAAGACCATGAC
** * *
68770245 TTTTAGCGGCGTTTTTTGGAAAGCGCCGCTAAAGACCATGAC
1 TTTTAGCGGCGTTTGCTGGAAAACGCCACTAAAGACCATGAC
68770287 TTTTAGCGGCG
1 TTTTAGCGGCG
68770298 CTTTTAACGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 17 0.38
42 28 0.62
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
TTTTAGCGGCGTTTGCTGGAAAACGCCACTAAAGACCATGAC
Found at i:68771328 original size:46 final size:48
Alignment explanation
Indices: 68771222--68771398 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 48
68771212 CCAAATTATG
* * * *
68771222 AGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGACATTGAGACG-
1 AGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGGC-TCGAGGCGT
* *
68771270 AGAACTAGTGTAAGA-CATGTTCGGGACAT-GCATCGGGCTCGAGGCGT
1 AGAGCCAGTGTAAGACCATGTTCGGGACATGGCATC-GGCTCGAGGCGT
*
68771317 A-AGCCAGTGTAAGA-CATG-TCTGGGACAT-GCATCGGCTACGA-G-AT
1 AGAGCCAGTGTAAGACCATGTTC-GGGACATGGCATCGGCT-CGAGGCGT
* * *
68771361 AATAGTCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 -AGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCG
68771399 ACTTAAGATA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
44 1 0.01
45 8 0.07
46 53 0.49
47 27 0.25
48 20 0.18
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGGCTCGAGGCGT
Found at i:68771408 original size:47 final size:46
Alignment explanation
Indices: 68771226--68771439 Score: 138
Period size: 47 Copynumber: 4.6 Consensus size: 46
68771216 ATTATGAGAG
* ** *
68771226 CCAGTGTAAGACCATGTCCGGGACATGGCATCGACATTGAGACGA-GAA
1 CCAGTGTAAGA-CATGTCTGGGACATGGCATCGAC-TACAGA-TATGAA
* * ***
68771274 CTAGTGTAAGACATGT-TCGGGACAT-GCATCGGGCT-C-GAGGCGTAA
1 CCAGTGTAAGACATGTCT-GGGACATGGCATC-GACTACAGATATG-AA
* *
68771319 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATAAT-AG
1 -CCAGTGTAAGACATGTCTGGGACATGGCATCGACTAC-AGAT-ATGAA
* *
68771366 TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTA-AGATATGAA
1 CCAGTGTAAGA-CATGTCTGGGACATGGCATCGAC-TACAGATATGAA
*
68771413 CCAGTGTAAGAACATGTCTAGGACATG
1 CCAGTGTAAG-ACATGTCTGGGACATG
68771440 ACATTGGCAC
Statistics
Matches: 134, Mismatches: 17, Indels: 31
0.74 0.09 0.17
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 6 0.04
46 46 0.34
47 56 0.42
48 20 0.15
49 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGGCATCGACTACAGATATGAA
Found at i:68776061 original size:49 final size:49
Alignment explanation
Indices: 68775989--68776175 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
68775979 TAGTCGAAGC
68775989 TATCTGGTAGCA--TAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTA-CACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
68776037 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * * * * *
68776088 TTTCGGGTACGCATAGTAGCCTTCACTTAATACTACACATGCGACTAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
68776137 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
68776176 CGTGACCTCA
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.02
48 8 0.07
49 64 0.56
50 2 0.02
51 38 0.33
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Done.