Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 206 of 320
Found at i:68776115 original size:100 final size:99
Alignment explanation
Indices: 68775994--68776180 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 99
68775984 GAAGCTATCT
*
68775994 GGTAGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCT
1 GGTAGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCT
68776059 GCACTTAGTACTACACACGTGATCACAGTTTTCG
66 GCACTTAGTACTACACACGTGATCACAGTTTTCG
* * *
68776093 GGTACGCATAGTAGCCTTCACTTAATACTACACATGCGACTAATTATCTGGTACACGTAGTAGCC
1 GGTA-GCATAGTAGCCTGCACTTAATACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
68776158 TGCACTTAGTACTACACACGTGA
65 TGCACTTAGTACTACACACGTGA
68776181 CCTCACAATA
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 4 0.05
100 79 0.95
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (99 bp):
GGTAGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:68778598 original size:79 final size:81
Alignment explanation
Indices: 68778454--68778638 Score: 193
Period size: 79 Copynumber: 2.3 Consensus size: 81
68778444 GCTACTCGTT
* * *
68778454 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCATTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGGACTTAACCCG
* *
68778518 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * **
68778534 CCAATA-CCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATTTTAGTC
1 -CAA-AGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGGA-CTTAACC
* *
68778595 CGGATATGGTCACTTAGCA
63 CGGATATAGTAACTTAGCA
68778614 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
68778639 CATCATTCGA
Statistics
Matches: 87, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
78 4 0.05
79 55 0.63
80 24 0.28
81 3 0.03
82 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:68778638 original size:40 final size:40
Alignment explanation
Indices: 68778435--68778638 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
68778425 CGGAATTTAA
** *
68778435 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
68778475 CCGGTTATAGTAACTCGCATAAATGCATTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68778515 CCGGATTTAGTAACTCGCACCAATACCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68778554 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATTTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68778594 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68778634 CCGGA
1 CCGGA
68778639 CATCATTCGA
Statistics
Matches: 133, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.24
40 87 0.65
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68779928 original size:23 final size:26
Alignment explanation
Indices: 68779877--68779931 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
68779867 GGATGGACAC
*
68779877 ATTT-TTTTTCTTTTGTTTTCATCCT
1 ATTTCTTTCTCTTTTGTTTTCATCCT
68779902 -TTTCTTTCTCTTTT-TTTTC-T-CT
1 ATTTCTTTCTCTTTTGTTTTCATCCT
68779924 ATTTCTTT
1 ATTTCTTT
68779932 ATTACTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 2 0.07
23 8 0.30
24 8 0.30
25 9 0.33
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (26 bp):
ATTTCTTTCTCTTTTGTTTTCATCCT
Found at i:68786616 original size:39 final size:40
Alignment explanation
Indices: 68786491--68786671 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
68786481 GCTACTCGTT
*
68786491 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * * *
68786531 CAAATGCATTCGGGACTTAACCCAGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
68786571 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
68786610 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
68786651 CAAA-GCCTTCAGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
68786672 TGGACATCAT
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 71 0.61
41 13 0.11
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68787946 original size:23 final size:22
Alignment explanation
Indices: 68787915--68787968 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
68787905 GATGGACACA
*
68787915 TTTT-TTTTCTTTTGTTTTCATCC
1 TTTTCTTTCCTTTT-TTTTC-TCC
68787938 TTTTCTTTCCCTTTTTTTTCTCC
1 TTTTCTTT-CCTTTTTTTTCTCC
*
68787961 ATTTCTTT
1 TTTTCTTT
68787969 ATTACTAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 14 0.52
24 8 0.30
25 5 0.19
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTTCTTTCCTTTTTTTTCTCC
Found at i:68793001 original size:47 final size:48
Alignment explanation
Indices: 68792824--68793037 Score: 167
Period size: 47 Copynumber: 4.6 Consensus size: 48
68792814 TGAGAGCAAA
* * ** * * *
68792824 TGTAAGACCATGTCCGAGACATGGCATCAGCTTTGAGACGA-GGGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGA-TATGAGCCAG
* * ** ** *
68792872 TGTAAGA-GATGTCTAGGACAT-GCATTGGCCT-CGAGGCATAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAG-CTACGAGATATGAGCCAG
*
68792918 TGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGATGAT-AGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAT-ATGAGCCAG
*
68792964 TGTAAGACCATGTCTGGGACATGGCATC-GACT-TGAGATATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAG-CTACGAGATATGAGCCAG
* *
68793011 TGTAAAACCATGTCTAGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
68793038 TGGCACCTTA
Statistics
Matches: 135, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.02
46 54 0.40
47 64 0.47
48 14 0.10
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGATATGAGCCAG
Found at i:68793032 original size:140 final size:141
Alignment explanation
Indices: 68792780--68793041 Score: 320
Period size: 140 Copynumber: 1.9 Consensus size: 141
68792770 TGAGCTAGTA
* * *
68792780 TAAGACATGTTTGGGACATGCATCGGCCATAGTATGAGAGCAAATGTAAGACCATGTCCGAGACA
1 TAAGACATGTCTGGGACATGCATCAGCCAGAGTATGAGAGCAAATGTAAGACCATGTCCGAGACA
* * * *
68792845 TGGCATCAGCTTTGAGACGAGGGCTAGTGTAAGAGATGTCTAGGACAT-GCATTGGCCTCGAGGC
66 TGGCATCAGCTTTGAGACGAGAGCCAGTGTAAAACATGTCTAGGACATGGCATTGGCCTCGAGGC
68792909 ATAAGCCAGTG
131 ATAAGCCAGTG
* * * * *
68792920 TAAGACATGTCTGGGACATGCATCAGCTACGAG-ATGATAGTC-AGTGTAAGACCATGTCTGGGA
1 TAAGACATGTCTGGGACATGCATCAGCCA-GAGTATGAGAG-CAAATGTAAGACCATGTCCGAGA
*
68792983 CATGGCATC-GAC-TTGAGA-TATGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGC
64 CATGGCATCAG-CTTTGAGACGA-GAGCCAGTGTAAAA-CATGTCTAGGACATGGCATTGGC
68793042 ACCTTACCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 73 0.71
141 11 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
TAAGACATGTCTGGGACATGCATCAGCCAGAGTATGAGAGCAAATGTAAGACCATGTCCGAGACA
TGGCATCAGCTTTGAGACGAGAGCCAGTGTAAAACATGTCTAGGACATGGCATTGGCCTCGAGGC
ATAAGCCAGTG
Found at i:68799897 original size:46 final size:46
Alignment explanation
Indices: 68799839--68800013 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
68799829 TGTAACCCGC
* *
68799839 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
68799885 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
68799935 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
68799978 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
68800014 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:68799975 original size:93 final size:93
Alignment explanation
Indices: 68799846--68800017 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
68799836 CGCCCATAAG
* * *
68799846 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68799911 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
68799939 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68800004 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68800018 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68807054 original size:93 final size:93
Alignment explanation
Indices: 68806941--68807112 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68806931 CGCCCATAAG
* *
68806941 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68807006 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68807034 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68807099 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68807113 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68807109 original size:46 final size:46
Alignment explanation
Indices: 68806934--68807109 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68806924 TGTAACCCGC
* * *
68806934 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68806980 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68807030 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68807073 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68807110 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68809714 original size:30 final size:30
Alignment explanation
Indices: 68809680--68809747 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
68809670 TGTGTCCAGG
*
68809680 CCGTGTGTCTCACACGGCCAAGGGACACGC
1 CCGTGTGTCTCACACAGCCAAGGGACACGC
68809710 CCGTGTGTCTCACACAGCCAAGGGACACGC
1 CCGTGTGTCTCACACAGCCAAGGGACACGC
68809740 CCGTGTGT
1 CCGTGTGT
68809748 TAGGCCGTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.16
Consensus pattern (30 bp):
CCGTGTGTCTCACACAGCCAAGGGACACGC
Found at i:68812270 original size:40 final size:40
Alignment explanation
Indices: 68812186--68812410 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
68812176 TTGAATGATG
* * * *
68812186 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68812226 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68812266 TCCGGGCAAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68812305 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68812345 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68812386 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68812411 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 32 0.20
40 119 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68812432 original size:119 final size:119
Alignment explanation
Indices: 68812193--68812443 Score: 269
Period size: 119 Copynumber: 2.1 Consensus size: 119
68812183 ATGTCCGGGC
*
68812193 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * ** *
68812258 ATACTAATTCCGGGCAAAGCCTGAAGGCATTTGTGCGAGTTACTAAATCTGGGT
66 ATACTAATACCGGGCAAAGCCCGAAGGCATTTGAACGAGTTACTAAATCTCGGT
* * * **
68812312 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * * *
68812375 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATC-CGGT
64 AGATACTAAT-ACCGGGCAAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATCTCGGT
* *
68812431 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
68812444 TACGTGATTT
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.70
120 30 0.27
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCAAAGCCCGAAGGCATTTGAACGAGTTACTAAATCTCGGT
Found at i:68815718 original size:48 final size:48
Alignment explanation
Indices: 68815591--68815906 Score: 350
Period size: 48 Copynumber: 6.6 Consensus size: 48
68815581 TCCACATGTT
** * * * *
68815591 GATGCCAAATCCCAGAGATGGTCTTACACTAGCACACATAT-AAGCGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA-CACC
* * * *
68815639 GATGCCATGT-ACTGACATGGTCTTACACTGGCTCACACATCCACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* *
68815686 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATTTCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* * *
68815734 GATGCCCTGTCTCAGACATGGTCTTACACTGGCTCACATATCAACGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* * *
68815782 GATGCCATATCCCAGATATGGTCTTACACTGGCTCACATATCAACACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
* ** * * * * **
68815830 GATGCCATATCCCAGATTTGGTCTTATA-TGGGGTCTCATATCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GGCTCACATATCAACACC
68815878 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
68815907 GGGACTTTAT
Statistics
Matches: 225, Mismatches: 39, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
47 38 0.17
48 187 0.83
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACACC
Found at i:68817761 original size:38 final size:38
Alignment explanation
Indices: 68817719--68817794 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
68817709 TCTTTCATCA
68817719 TCACAAACCATTAACACTGTTTTAAATTTCAGATCTTT
1 TCACAAACCATTAACACTGTTTTAAATTTCAGATCTTT
*
68817757 TCACAAACCATTAACACTGTTTTAAATTTCTGATCTTT
1 TCACAAACCATTAACACTGTTTTAAATTTCAGATCTTT
68817795 CCAGGACATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.41
Consensus pattern (38 bp):
TCACAAACCATTAACACTGTTTTAAATTTCAGATCTTT
Found at i:68819140 original size:27 final size:27
Alignment explanation
Indices: 68819095--68819371 Score: 182
Period size: 27 Copynumber: 10.3 Consensus size: 27
68819085 CAAATTATTG
* *
68819095 AAATACCCCCAG-TTGTAAAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
* * * *
68819121 AAGTACCCCCAGTTTATAAAACTACCC
1 AAATACCCCCGGTTTATAAAATTACCA
* * * *
68819148 AAATATCCTCGATTTATAGAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
*** * * * *
68819175 TTTTACCCTCGATTTACAAAATTACTA
1 AAATACCCCCGGTTTATAAAATTACCA
** *
68819202 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
* * *
68819229 AAATACCCTC-GATCAGTAAAATTACCA
1 AAATACCCCCGGTTTA-TAAAATTACCA
** * *
68819256 AAATACCCTTGGTTTGTAAAATTACTA
1 AAATACCCCCGGTTTATAAAATTACCA
* * * *
68819283 AAGTACCCCTGGTTTGTAAAATTACTA
1 AAATACCCCCGGTTTATAAAATTACCA
* *
68819310 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCCGGTTTATAAAATTACCA
*** * *
68819337 AAATACCCCTAATTTGTAAAA-TACTA
1 AAATACCCCCGGTTTATAAAATTACCA
68819363 AAATACCCC
1 AAATACCCC
68819372 TGTAAGGTAG
Statistics
Matches: 207, Mismatches: 41, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
26 27 0.13
27 178 0.86
28 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATACCCCCGGTTTATAAAATTACCA
Found at i:68819225 original size:54 final size:54
Alignment explanation
Indices: 68819107--68819370 Score: 232
Period size: 54 Copynumber: 4.9 Consensus size: 54
68819097 ATACCCCCAG
* * * ** * * *
68819107 TTGTAAAATTACCAAAGTACCC-CCAGTTTATAAAACTACCCAAATATCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGA-TTTATAAAATTACTAAAATACCCTTGGT
* * *** *
68819161 TTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTTGGT
** * *
68819215 TTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGATTTA-TAAAATTACTAAAATACCCTTGGT
* * * * *
68819269 TTGTAAAATTACTAAAGTACCC-CTGGTTTGTAAAATTACTAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTC-GATTTATAAAATTACTAAAATACCCTTGGT
* *
68819323 TTGTAAAATTACCAAAATACCC-CTAATTTGTAAAA-TACTAAAATACCC
1 TTGTAAAATTACCAAAATACCCTC-GATTTATAAAATTACTAAAATACCC
68819371 CTGTAAGGTA
Statistics
Matches: 172, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
53 16 0.09
54 153 0.89
55 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACTAAAATACCCTTGGT
Found at i:68819233 original size:81 final size:81
Alignment explanation
Indices: 68819111--68819373 Score: 228
Period size: 81 Copynumber: 3.3 Consensus size: 81
68819101 CCCCAGTTGT
* * ** * * * * *
68819111 AAAATTACCAAAGTACCCCCAGTTTATAAAACTACCCAAATATCCTCGATTTA-TAGAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
***
68819175 TTTTACCCTCGATTTAC
65 AAATACCCTCGATTTAC
* *
68819192 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
* * **
68819257 AATACCCTTGGTTTGT
66 AATACCCTCGATTTAC
* * * * **
68819273 AAAATTACTAAAGTACCCCTGGTTTGTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTC-GATCAGTAAAATTACCA
* **
68819337 AAATACCC-CTAATTTGT
65 AAATACCCTC-GATTTAC
68819354 AAAA-TACTAAAATACCCCTG
1 AAAATTACTAAAATACCCCTG
68819374 TAAGGTAGAA
Statistics
Matches: 149, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
80 18 0.12
81 131 0.88
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCTCGATTTAC
Found at i:68819402 original size:27 final size:27
Alignment explanation
Indices: 68819363--68819467 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
68819353 TAAAATACTA
* *
68819363 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
68819390 GAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
68819417 AAATACCCTTGTAGGGTAGAATTACC-
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
68819443 AAGATACCCATGTGGGGTAAAATTA
1 AA-ATACCCTTGTAGGGTAGAATTA
68819468 TCATTTTGCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.03
27 66 0.97
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:68819699 original size:25 final size:25
Alignment explanation
Indices: 68819671--68819740 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
68819661 AGGAAGTGCT
68819671 AAAAGGG-TTATGCCCCAGTTTACCA
1 AAAAGGGCTT-TGCCCCAGTTTACCA
* *
68819696 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
68819721 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
68819741 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:68819753 original size:24 final size:24
Alignment explanation
Indices: 68819681--68819767 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 24
68819671 AAAAGGGTTA
*
68819681 TGCCCCAGTTTACCAAAA-AGGGCTT
1 TGCCCCAG-TTATCAAAAGA-GGCTT
*
68819706 TGCCTCAGTTTATCAAAA-AGGGCTT
1 TGCCCCAG-TTATCAAAAGA-GGCTT
* *
68819731 TGCCCCAGTTATTAAAAGAGGCTA
1 TGCCCCAGTTATCAAAAGAGGCTT
*
68819755 GGCCTCCAGTTAT
1 TGCC-CCAGTTAT
68819768 ATGCTAAAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
24 15 0.28
25 39 0.72
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
TGCCCCAGTTATCAAAAGAGGCTT
Found at i:68821665 original size:40 final size:40
Alignment explanation
Indices: 68821603--68821783 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
68821593 AACCCAAGTA
* * *
68821603 CCTTCGGGATTTAG-TCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68821642 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68821681 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68821721 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68821761 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68821784 CATTCGAATA
Statistics
Matches: 132, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 49 0.37
40 82 0.62
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68821734 original size:79 final size:80
Alignment explanation
Indices: 68821603--68821783 Score: 287
Period size: 79 Copynumber: 2.3 Consensus size: 80
68821593 AACCCAAGTA
* * * *
68821603 CCTTCGGGATTTAG-TCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
68821667 TCAATAGCAC-AATG
66 TCAATAGCACAAATG
68821681 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
68821745 GTCACTAGCACAAATG
65 GTCAATAGCACAAATG
68821761 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68821784 CATTCGAATA
Statistics
Matches: 95, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
78 13 0.14
79 54 0.57
80 28 0.29
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAATG
Found at i:68829733 original size:40 final size:40
Alignment explanation
Indices: 68829671--68829891 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
68829661 AACCCAAGTA
* * *
68829671 CCTTCGGGATTTAG-TCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68829710 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68829749 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68829789 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68829829 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
68829869 CCTTCAGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
68829892 CATTTGAATA
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 49 0.29
40 120 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68836717 original size:8 final size:8
Alignment explanation
Indices: 68836704--68836729 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
68836694 TTCATTTCAA
68836704 TCCACATT
1 TCCACATT
68836712 TCCACATT
1 TCCACATT
68836720 TCCACATT
1 TCCACATT
68836728 TC
1 TC
68836730 TTAGCTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (8 bp):
TCCACATT
Found at i:68840256 original size:48 final size:48
Alignment explanation
Indices: 68839839--68840253 Score: 438
Period size: 48 Copynumber: 8.7 Consensus size: 48
68839829 TCATGTCAGT
* * * *
68839839 GCCGATGCCATGTCCGAGACATGGTCTTACACTAGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * *
68839887 GCCGATGCCATGTCCTAGACATGATTTTACACTGGCTCACATATCCAA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-CAAC
* * *
68839935 GCCGATGCCATGTCCTAGATATGGTCTTACACTGGCTCACATTTCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * *
68839983 GCCGATGCCATGTCCGAAACATGGTCTTACATTGGCTCACATTTCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * *
68840031 GTCGATGCCATATCCCAAACATGGTCTAACACTGGCTCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
** * * * * *
68840079 GTTGATGCCATATGCTAGACATGGTCTTACCCTAG-TCACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* * * * *
68840126 GCCGATGCCATATCCCAGATATGGTCTTACACTAGCTCACATATCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
* ** * * * * * * *
68840174 GCTGATGCCATAACCCAGAGATGGTCTTATACGGGGTCTCATATCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
*
68840222 GCTGATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
68840254 GGGACCTTAT
Statistics
Matches: 318, Mismatches: 46, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
47 44 0.14
48 271 0.85
49 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC
Found at i:68846114 original size:8 final size:9
Alignment explanation
Indices: 68846084--68846121 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
68846074 TTATATTTTA
68846084 TTATTTGAT
1 TTATTTGAT
*
68846093 TTCTTGTGAT
1 TTATT-TGAT
68846103 TTATTT-AT
1 TTATTTGAT
68846111 TTATTTGAT
1 TTATTTGAT
68846120 TT
1 TT
68846122 CTTTTTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 8 0.32
9 9 0.36
10 8 0.32
ACGTcount: A:0.18, C:0.03, G:0.11, T:0.68
Consensus pattern (9 bp):
TTATTTGAT
Found at i:68846141 original size:27 final size:28
Alignment explanation
Indices: 68846073--68846142 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
68846063 TTCCACATGT
68846073 TTTATATT-TTATTATTTGATTTCTTGTGA
1 TTTAT-TTATTATTATTTGATTTCTTGT-A
68846102 TTTATTTA-T-TTATTTGATTTCTT-T-
1 TTTATTTATTATTATTTGATTTCTTGTA
*
68846126 TTTTTCTTATTATTATT
1 TTTAT-TTATTATTATT
68846143 AGTATTGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
24 4 0.11
25 3 0.08
26 2 0.06
27 19 0.53
28 3 0.08
29 5 0.14
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (28 bp):
TTTATTTATTATTATTTGATTTCTTGTA
Found at i:68851524 original size:34 final size:34
Alignment explanation
Indices: 68851481--68851548 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
68851471 CTCGAAGAGA
68851481 AAGATAAGATATATTGACCATTAACCAACTAGAC
1 AAGATAAGATATATTGACCATTAACCAACTAGAC
68851515 AAGATAAGATATATTGACCATTAACCAACTAGAC
1 AAGATAAGATATATTGACCATTAACCAACTAGAC
68851549 GGATAATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (34 bp):
AAGATAAGATATATTGACCATTAACCAACTAGAC
Found at i:68853952 original size:50 final size:50
Alignment explanation
Indices: 68853837--68854215 Score: 334
Period size: 50 Copynumber: 7.5 Consensus size: 50
68853827 CTGGTATGCA
* * * * * *
68853837 TAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
*
68853886 TAGTAGCCAGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * ** * * *
68853936 TAGTAGCCTGCGCTTAGTACTACACACGTGA-TTGAA-GTTGTCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AACCATCT-GA-TACACG
* * * *
68853987 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* *
68854037 TAGTAGCCTACACTTAGTACAACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * *** * * * *
68854087 TAGTAGCCTGCACCTAGTACTACACATGTGA-CTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATCTGATACACG
* * * * *
68854138 TAGTAGCCTGCACTTAATACTACACATGTGACCTAAGACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-A-ACCATCTGATACACG
* * *
68854190 TTGCAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
68854216 TGTGTTCTCA
Statistics
Matches: 265, Mismatches: 55, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
49 34 0.13
50 125 0.47
51 71 0.27
52 34 0.13
53 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:68854071 original size:151 final size:151
Alignment explanation
Indices: 68853834--68854173 Score: 549
Period size: 151 Copynumber: 2.3 Consensus size: 151
68853824 TATCTGGTAT
* *
68853834 GCATAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCCGGTACACGTAGTAGCCAGCA
1 GCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACACGTAGTAGCCAGCA
* * *
68853898 CTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCGCTTAGTACTACACAC
66 CTTAGTACAACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACCTAGTACTACACAC
*
68853963 GTGATTGAAGTTGTCGAGTAC
131 GTGACTGAAGTTGTCGAGTAC
* * *
68853984 GCATAGTAGCCTACACTTAGTACTACACATGTGACCTAACTATCTGGTACACGTAGTAGCCTA-C
1 GCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACACGTAGTAGCC-AGC
68854048 ACTTAGTACAACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACCTAGTACTACACA
65 ACTTAGTACAACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACCTAGTACTACACA
* *
68854113 TGTGACTGAAGTTGTCGGGTAC
130 CGTGACTGAAGTTGTCGAGTAC
*
68854135 GCATAGTAGCCTGCACTTAATACTACACATGTGACCTAA
1 GCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
68854174 GACCATCTTA
Statistics
Matches: 175, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
150 33 0.19
151 141 0.81
152 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (151 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCCGGTACACGTAGTAGCCAGCA
CTTAGTACAACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACCTAGTACTACACAC
GTGACTGAAGTTGTCGAGTAC
Found at i:68854134 original size:101 final size:101
Alignment explanation
Indices: 68853823--68854219 Score: 365
Period size: 101 Copynumber: 3.9 Consensus size: 101
68853813 ATAACTGAAG
** * * * * * * * *
68853823 CTATCTGGTATGCATAGTAGCCTGTACTTAGTACTACACATGCGACC--AACAATCCGGTACACG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATCTGATACACA
* *
68853886 TAGTAGCCAGCACTTAGTACTACACACGTGACCTAA
66 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * ** * *
68853922 CCATCTGATACACGTAGTAGCCTGCGCTTAGTACTACACACGTGA-TTGAA-GTTGTCGAGTACG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATCT-GA-TACA
*
68853985 CATAGTAGCCTACACTTAGTACTACACATGTGACCTAA
64 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * *
68854023 CTATCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGTGACCT-AACCATCTGATACACG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATCTGATACACA
*
68854087 TAGTAGCCTGCACCTAGTACTACACATGTGA-CTGAA
66 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * * * * * * *
68854123 GTTGTCGGGTACGCATAGTAGCCTGCACTTAATACTACACATGTGACCTAAGACCATCTTAAACA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-ACCATCTGATACA
* * *
68854188 CATTGCAGCCTGCACATAGTACTACACATGTG
64 CATAGTAGCCTGCACTTAGTACTACACATGTG
68854220 TTCTCACAAT
Statistics
Matches: 240, Mismatches: 48, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
99 39 0.16
100 38 0.16
101 120 0.50
102 4 0.02
103 39 0.16
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACCATCTGATACACA
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:68859079 original size:27 final size:27
Alignment explanation
Indices: 68858812--68859155 Score: 357
Period size: 27 Copynumber: 12.7 Consensus size: 27
68858802 TTAGTTTACC
* *
68858812 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
68858839 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
68858866 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
68858893 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
68858920 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
68858947 AAATTACTAAAATACCTTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
68858974 AAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTGTA
*
68859001 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
68859028 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * *
68859055 AAATTACCAAAATAAACTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * ***
68859082 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * **
68859109 AAATTATGAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
68859136 AAATTACCAAAGTATCCTTG
1 AAATTACCAAAATACCCTTG
68859156 ATTTACAGAA
Statistics
Matches: 265, Mismatches: 50, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 264 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:68859221 original size:27 final size:27
Alignment explanation
Indices: 68859191--68859331 Score: 196
Period size: 27 Copynumber: 5.2 Consensus size: 27
68859181 CGATTTACAA
*
68859191 AATTACTGAAAT-CCCCTTATAGGGTAG
1 AATTACTGAAATACCCC-TGTAGGGTAG
* *
68859218 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
68859245 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
68859272 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
68859299 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
68859326 AATTAC
1 AATTAC
68859332 CGAGATACTT
Statistics
Matches: 102, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.01
27 97 0.95
28 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:68859233 original size:54 final size:54
Alignment explanation
Indices: 68859189--68859357 Score: 200
Period size: 54 Copynumber: 3.1 Consensus size: 54
68859179 CTCGATTTAC
*
68859189 AAAATTACTGAAAT-CCCCTTATAGGGTAGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCC-TATAGGGTAGAATTACCGAAATACCCTCGTAGGGT
* *
68859243 AGAATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCC-CTGTAGGGT
1 AAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTC-GTAGGGT
* * * * * * * *
68859297 AGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGATA-CTTTGTGGGGT
1 AAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTCGTAGGGT
68859350 AAAATTAC
1 AAAATTAC
68859358 CATTTTGCCC
Statistics
Matches: 100, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
53 14 0.14
54 82 0.82
55 4 0.04
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTCGTAGGGT
Found at i:68859837 original size:22 final size:22
Alignment explanation
Indices: 68859785--68859849 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
68859775 TTAAAGCCTT
* * *
68859785 CTGATTATGGCTTTTTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
68859807 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
68859829 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
68859850 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:68860044 original size:26 final size:27
Alignment explanation
Indices: 68860008--68860081 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
68859998 ATTCTGTTAA
* *
68860008 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
68860034 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
68860061 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
68860082 ATAACTGAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:68860256 original size:6 final size:6
Alignment explanation
Indices: 68860222--68860368 Score: 106
Period size: 6 Copynumber: 23.7 Consensus size: 6
68860212 ATTCACTTTT
* *
68860222 TGATTC TTGATTC TG-TTACC TGATAC TGATTC TGATTT TGATTC TG-TTACC
1 TGATTC -TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGATT--C
* * *
68860273 TGATAC TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* *
68860322 TGATTC TG-TCACC TGATTC TGATTC TGATTC TAATTC T-AGTTC TGAT
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
68860369 AATGTTTCTT
Statistics
Matches: 113, Mismatches: 13, Indels: 29
0.73 0.08 0.19
Matches are distributed among these distances:
5 8 0.07
6 82 0.73
7 19 0.17
8 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:68860263 original size:31 final size:31
Alignment explanation
Indices: 68860222--68860351 Score: 224
Period size: 31 Copynumber: 4.2 Consensus size: 31
68860212 ATTCACTTTT
68860222 TGATTCTTGATTCTGTTACCTGATACTGATTC
1 TGATT-TTGATTCTGTTACCTGATACTGATTC
68860254 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTTTGATTCTGTTACCTGATACTGATTC
68860285 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTTTGATTCTGTTACCTGATACTGATTC
* * *
68860316 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTTTGATTCTGTTACCTGATACTGATTC
68860347 TGATT
1 TGATT
68860352 CTAATTCTAG
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
31 90 0.95
32 5 0.05
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (31 bp):
TGATTTTGATTCTGTTACCTGATACTGATTC
Found at i:68860352 original size:31 final size:31
Alignment explanation
Indices: 68860222--68860384 Score: 222
Period size: 31 Copynumber: 5.3 Consensus size: 31
68860212 ATTCACTTTT
68860222 TGATTCTTGATTCTGTTACCTGATACTGATTC
1 TGATTC-TGATTCTGTTACCTGATACTGATTC
*
68860254 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTTACCTGATACTGATTC
*
68860285 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTTACCTGATACTGATTC
* *
68860316 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTGATACTGATTC
* * *
68860347 TGATTCTAATTCTAGTT--CTGATAATGTTTC
1 TGATTCTGATTCT-GTTACCTGATACTGATTC
*
68860377 TTATTCTG
1 TGATTCTG
68860385 TAATGGGTTA
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 16 0.13
31 96 0.81
32 7 0.06
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
TGATTCTGATTCTGTTACCTGATACTGATTC
Found at i:68864220 original size:50 final size:50
Alignment explanation
Indices: 68864111--68864539 Score: 275
Period size: 50 Copynumber: 8.5 Consensus size: 50
68864101 CTGGTACGCA
* *** ** *
68864111 TAGTAGCCTGCATTTAGTACTACACATGCGACC-AAGAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
*
68864160 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
* * * ** * * *
68864210 TAGTTGCCTGCACTTAGTACTACACACGTGA-TTGAA-GTTGTCAAGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACATGACCT-AACCATCT-GA-TACACG
* * * * *
68864261 TAGGAGCCTACACTTAGT-C-CCACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACAT--GACCTAACCATCTGATACACG
*
68864311 TAGTAGCCTACACTTAGTA-TA-ACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACA--TGACCTAACCATCTGATACACG
* * * *** * * * *
68864361 TAGTAGCTTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACATGACCT-AA-CCATCTGATACACG
* * *
68864412 TAGTAGCCTAG-ACTTAGTACTACACATGA-GACCTAACTATCTGGTACACG
1 TAGTAGCCT-GCACTTAGTACTACACA-CATGACCTAACCATCTGATACACG
* ** * * *
68864462 TAGTAGCCTGCATTTAGTACTACACATGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACATGACCT--AACCATCTGATACACG
* * *
68864514 TAGTAACCTTCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
68864540 AGAGTTCTGA
Statistics
Matches: 293, Mismatches: 64, Indels: 43
0.73 0.16 0.11
Matches are distributed among these distances:
49 40 0.14
50 150 0.51
51 60 0.20
52 43 0.15
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
Found at i:68864343 original size:151 final size:152
Alignment explanation
Indices: 68864104--68864539 Score: 603
Period size: 151 Copynumber: 2.9 Consensus size: 152
68864094 AAGCTATCTG
* * **
68864104 GTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACC-AAGAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
* *
68864168 TGCACTTAGTACTACACACA--TGACCTAACCATTTGATACACGTAGTTGCCTGCACTTAGTACT
66 TGCACTTAGTACTA-ACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACT
68864231 ACACACGTGATTGAAGTTGTCAA
130 ACACACGTGATTGAAGTTGTCAA
* * * *
68864254 GTACACATAGGAGCCTACACTTAGTCCCACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
* *
68864319 TACACTTAGTA-TAACACATGTGACCTAACCATCTGATACACGTAGTAGCTTGCACTTAGTACTA
66 TGCACTTAGTACTAACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
**
68864383 CACACGTGATTGAAGTTGTCGG
131 CACACGTGATTGAAGTTGTCAA
* *
68864405 GTACGCATAGTAGCCTAGACTTAGTACTACACATGAGACCTAACTATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
* * * * * * *
68864470 TGCATTTAGTACT-ACACATGTGACCTAAAACCATCTTAAACACATAGTAACCTTCACATAGTAC
66 TGCACTTAGTACTAACACATGTGACCT--AACCATCTGATACACGTAGTAGCCTGCACTTAGTAC
68864534 TACACA
129 TACACA
68864540 AGAGTTCTGA
Statistics
Matches: 251, Mismatches: 29, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
149 5 0.02
150 36 0.14
151 174 0.69
152 1 0.00
153 35 0.14
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (152 bp):
GTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
TGCACTTAGTACTAACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CACACGTGATTGAAGTTGTCAA
Found at i:68864408 original size:101 final size:101
Alignment explanation
Indices: 68864303--68864492 Score: 283
Period size: 101 Copynumber: 1.9 Consensus size: 101
68864293 CTAACTATCT
* *
68864303 GGTACACGTAGTAGCCTACACTTAGTA-TAACACATGTGACCTAACCATCTGATACACGTAGTAG
1 GGTACACATAGTAGCCTACACTTAGTACT-ACACATGAGACCTAACCATCTGATACACGTAGTAG
*
68864367 CTTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
65 CCTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
* * * *
68864404 GGTACGCATAGTAGCCTAGACTTAGTACTACACATGAGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTACACTTAGTACTACACATGAGACCTAACCATCTGATACACGTAGTAGC
* *
68864469 CTGCATTTAGTACTACACATGTGA
66 CTGCACTTAGTACTACACACGTGA
68864493 CCTAAAACCA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 78 0.99
102 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (101 bp):
GGTACACATAGTAGCCTACACTTAGTACTACACATGAGACCTAACCATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATTGAAGTTGTCG
Found at i:68868725 original size:42 final size:42
Alignment explanation
Indices: 68868619--68868729 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 42
68868609 TACCATACCA
* ** *
68868619 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATCAAATCTCATATCG
* * * * *
68868661 ATTCCAATAGCCCAGCTATGGTCTTACA-CAAAGTCTCATCTGG
1 ATGCC-ATATCCCAGATATGGTCTTACATCAAA-TCTCATATCG
68868704 ATGCCATATCCCAGATATGGTCTTAC
1 ATGCCATATCCCAGATATGGTCTTAC
68868730 TGTAACCCTA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
42 25 0.45
43 30 0.55
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATCAAATCTCATATCG
Found at i:68874087 original size:25 final size:25
Alignment explanation
Indices: 68874035--68874119 Score: 68
Period size: 25 Copynumber: 3.4 Consensus size: 25
68874025 ACAACTCTCT
* * *
68874035 TGAGCTTCCCAA-TACTTGACTCTCA
1 TGAGCTTCCTAATTACTAG-CTCACA
*
68874060 TGAGCTTCCTAATATAC-AGCTCATA
1 TGAGCTTCCTAAT-TACTAGCTCACA
* *
68874085 TGATCTT-CTCATTACTTAGCTCACA
1 TGAGCTTCCTAATTAC-TAGCTCACA
68874110 TGAGCTTCCT
1 TGAGCTTCCT
68874120 GTTATATAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
23 3 0.06
24 4 0.09
25 34 0.72
26 3 0.06
27 3 0.06
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (25 bp):
TGAGCTTCCTAATTACTAGCTCACA
Found at i:68874129 original size:25 final size:25
Alignment explanation
Indices: 68874058--68874131 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
68874048 ACTTGACTCT
* *
68874058 CATGAGCTTCCTAATATACAGCTCA
1 CATGAGCTTCCTATTATATAGCTCA
* *
68874083 TATGATCTT-CTCATTACT-TAGCTCA
1 CATGAGCTTCCT-ATTA-TATAGCTCA
*
68874108 CATGAGCTTCCTGTTATATAGCTC
1 CATGAGCTTCCTATTATATAGCTC
68874132 GGAAGAGCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
24 3 0.08
25 32 0.84
26 3 0.08
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (25 bp):
CATGAGCTTCCTATTATATAGCTCA
Found at i:68876011 original size:36 final size:36
Alignment explanation
Indices: 68875964--68876036 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
68875954 CATTCAATAA
68875964 GCTTATATGATGAACAAATAATGTCTCAAGGGATGG
1 GCTTATATGATGAACAAATAATGTCTCAAGGGATGG
*
68876000 GCTTATATGATGAACAAATAATGTGTCAAGGGATGG
1 GCTTATATGATGAACAAATAATGTCTCAAGGGATGG
68876036 G
1 G
68876037 TGACTAAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (36 bp):
GCTTATATGATGAACAAATAATGTCTCAAGGGATGG
Found at i:68890071 original size:43 final size:43
Alignment explanation
Indices: 68890024--68890117 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
68890014 TCTGGGATGT
** *
68890024 TGGCATCAACTTGAGA-TATCGTGTAAGACCGTGTTTGGGACAC
1 TGGCATCAACTAAAGATTA-CGTGTAAGACCATGTTTGGGACAC
** *
68890067 TGGCATTGACTAAAGATTACGTGTAAGACCATGTTTGGGACAT
1 TGGCATCAACTAAAGATTACGTGTAAGACCATGTTTGGGACAC
68890110 TGGCATCA
1 TGGCATCA
68890118 TTTTTAATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 40 0.95
44 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
TGGCATCAACTAAAGATTACGTGTAAGACCATGTTTGGGACAC
Found at i:68892762 original size:36 final size:36
Alignment explanation
Indices: 68892676--68892774 Score: 93
Period size: 36 Copynumber: 2.8 Consensus size: 36
68892666 TTTTAATGAC
68892676 CAATTAAACCTC-ATTT-AACTATG-ATTAATTGACAT
1 CAATTAAACCTCAATTTCAA-T-TGAATTAATTGACAT
* *
68892711 --ATATATACACACAATTTCAATTGAATTAATTGACAT
1 CAAT-TAAAC-CTCAATTTCAATTGAATTAATTGACAT
*
68892747 CAATTAAACCTCAA-TTCAATAGAATTAA
1 CAATTAAACCTCAATTTCAATTGAATTAA
68892775 GCAATTAATT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
33 2 0.04
34 4 0.08
35 17 0.33
36 21 0.40
37 6 0.12
38 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.34
Consensus pattern (36 bp):
CAATTAAACCTCAATTTCAATTGAATTAATTGACAT
Found at i:68894438 original size:42 final size:42
Alignment explanation
Indices: 68894315--68894460 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 42
68894305 TTTCGTCATG
* *
68894315 TGATTTCGTGTAAGACCAC-GTCTAGGAC-GTTGGCATC-AACTTT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGTA--TT
* * * **
68894358 TGTTTTACGTGTAATACCATGTCTGGGACA-TCAACATCGTATT
1 TGATTT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGTATT
*
68894401 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATGTT
1 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-TATT
* *
68894444 TGATTACATGTAAGACC
1 TGATTTCGTGTAAGACC
68894461 ACTCTGGGAC
Statistics
Matches: 81, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
42 26 0.32
43 32 0.40
44 22 0.27
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGTATT
Found at i:68897367 original size:47 final size:47
Alignment explanation
Indices: 68897204--68897369 Score: 162
Period size: 47 Copynumber: 3.6 Consensus size: 47
68897194 CGCCCATAAG
* * * * *
68897204 CGAAATCAAACTCAACTCAACGAGCTCGGATGCCTAATTACATTTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * *
68897251 CGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAA
1 CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
* * *
68897296 GTGAACTCGGATTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 -CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
68897344 CGAACTCAGACTCAACTCAACGAGTT
1 CGAACTCAGACTCAACTCAACGAGTT
68897370 TGGACGCACA
Statistics
Matches: 95, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 28 0.29
47 49 0.52
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (47 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68902910 original size:46 final size:46
Alignment explanation
Indices: 68902748--68902913 Score: 131
Period size: 46 Copynumber: 3.6 Consensus size: 46
68902738 TGTAACCCGC
** *
68902748 CCATAAGCGAACTCGGACTCAACTCAATAAGTTCAGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACGTTCACAT
* ** * * * *
68902794 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGGATGCCTAATTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGA--CGT--TCACAT
* * * * *
68902844 --TTCA-CAAACTCGGGCTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACGTTCACAT
*
68902887 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGCGAACTCGGACTCAACTCAA
68902914 TGAGCTCGGA
Statistics
Matches: 86, Mismatches: 27, Indels: 14
0.68 0.21 0.11
Matches are distributed among these distances:
43 4 0.05
45 4 0.05
46 46 0.53
47 23 0.27
48 4 0.05
50 5 0.06
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACGTTCACAT
Found at i:68902919 original size:93 final size:93
Alignment explanation
Indices: 68902757--68902966 Score: 312
Period size: 93 Copynumber: 2.3 Consensus size: 93
68902747 CCCATAAGCG
** * *
68902757 AACTCGGACTCAACTCAATAAGTTCAGGCGTTCACATCCATAAGTGAACTTAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAAC
*
68902822 GAGCTCGGATGCCTAATTACATTTCACA
66 GAGCTCGGATGCCTAATTACATCTCACA
* * * *
68902850 AACTCGGGCTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAAC
* **
68902915 GAGCTCGGATGCCTAGTTACATCTCATG
66 GAGCTCGGATGCCTAATTACATCTCACA
68902943 AACTCGGACTCAACTCAACGAGTT
1 AACTCGGACTCAACTCAACGAGTT
68902967 TGGACGCCCA
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 104 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCAGACGTTCACATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAATTACATCTCACA
Found at i:68902950 original size:47 final size:47
Alignment explanation
Indices: 68902809--68902964 Score: 151
Period size: 47 Copynumber: 3.3 Consensus size: 47
68902799 AGTGAACTTA
* * **
68902809 GACTCAACTCAACGAGCTCGGATGCCTAATTACATTTCACAAACTCG
1 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTCG
* * * * *
68902856 GGCTCAACTCAACGAGTTC--A-GAC--GTTCGCATCCATAAGTGAACTCG
1 GACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-TGAACTCG
*
68902902 GACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCATGAACTCG
1 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTCG
68902949 GACTCAACTCAACGAG
1 GACTCAACTCAACGAG
68902965 TTTGGACGCC
Statistics
Matches: 84, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.04
44 2 0.02
45 3 0.04
46 22 0.26
47 40 0.48
48 3 0.04
49 3 0.04
50 3 0.04
51 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTCG
Found at i:68905882 original size:42 final size:42
Alignment explanation
Indices: 68905836--68905989 Score: 202
Period size: 42 Copynumber: 3.6 Consensus size: 42
68905826 TAGGACTACG
* * * *
68905836 TGTAAAACCATATCTAGGATATGACATCAATATGAGACTTCG
1 TGTAAAACCATATCTGGGATATGGCATCGATATGAGACTTCA
68905878 TGTAAAACCATATCTGGGATATGGCATCGATATGAGACTTCA
1 TGTAAAACCATATCTGGGATATGGCATCGATATGAGACTTCA
* * * *
68905920 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGA-TTACA
1 TGTAAAACCATATCTGGGATA-TGGCATCGATATGAGACTT-CA
*
68905963 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAAACCATATCTGGGATATGGCAT
68905990 TGGTACGGTA
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
42 64 0.64
43 36 0.36
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
TGTAAAACCATATCTGGGATATGGCATCGATATGAGACTTCA
Found at i:68924047 original size:12 final size:12
Alignment explanation
Indices: 68924030--68924054 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68924020 TGAGCCACGT
68924030 AACTCCAAATTA
1 AACTCCAAATTA
68924042 AACTCCAAATTA
1 AACTCCAAATTA
68924054 A
1 A
68924055 GATCCTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (12 bp):
AACTCCAAATTA
Found at i:68924891 original size:51 final size:51
Alignment explanation
Indices: 68924798--68924894 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 51
68924788 CTACCTTCTT
* * *
68924798 CACAAAGTGGCTTTCACATAGTACCACACTTATGACCAAAGCTATCTTTAA
1 CACAAAGTGACTTGCACATAGTACCACACATATGACCAAAGCTATCTTTAA
* * * * *
68924849 CACATAGTGACTTGCACTTAGTACCACACATGTGATCGAAGCTATC
1 CACAAAGTGACTTGCACATAGTACCACACATATGACCAAAGCTATC
68924895 GGGTACGCAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (51 bp):
CACAAAGTGACTTGCACATAGTACCACACATATGACCAAAGCTATCTTTAA
Found at i:68924972 original size:50 final size:51
Alignment explanation
Indices: 68924902--68925033 Score: 169
Period size: 50 Copynumber: 2.6 Consensus size: 51
68924892 ATCGGGTACG
*
68924902 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AACCA-TCTAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATTCTAAT-CA
* * * *
68924952 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAATCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAACCATTCTAATCA
* *
68925004 CATAGTAGCCTACACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
68925034 TGTTCTCACA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 33 0.47
52 33 0.47
53 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATTCTAATCA
Found at i:68926498 original size:20 final size:20
Alignment explanation
Indices: 68926475--68926512 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
68926465 AAACAGTAGC
68926475 TCATCCATATAAACAATAAT
1 TCATCCATATAAACAATAAT
68926495 TCATCCATATAAACAATA
1 TCATCCATATAAACAATA
68926513 TTTATACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (20 bp):
TCATCCATATAAACAATAAT
Found at i:68926701 original size:47 final size:47
Alignment explanation
Indices: 68926640--68926741 Score: 123
Period size: 47 Copynumber: 2.2 Consensus size: 47
68926630 ATCTCTATTG
* * ** * *
68926640 AGCTTAAACGGTAAGCTCTGACGAGCTGAAAATAGTAAGCTTTTACA
1 AGCTGAAACAGTAAGCTCCAACGAGCTGAAAACAGTAAGCTCTTACA
* **
68926687 AGCTGAAACAGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTATG
1 AGCTGAAACAGTAAGCTCCAACGAGCTGAAAACAGTAAGCTCTTACA
68926734 AGCTGAAA
1 AGCTGAAA
68926742 TATCGATAAG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (47 bp):
AGCTGAAACAGTAAGCTCCAACGAGCTGAAAACAGTAAGCTCTTACA
Found at i:68926703 original size:23 final size:23
Alignment explanation
Indices: 68926640--68926729 Score: 72
Period size: 24 Copynumber: 3.8 Consensus size: 23
68926630 ATCTCTATTG
* * *
68926640 AGCTTAAACGGTAAGCTCTGACG
1 AGCTGAAACAGTAAGCTCTGACA
* * *
68926663 AGCTGAAAATAGTAAGCTTTTACA
1 AGCTG-AAACAGTAAGCTCTGACA
** **
68926687 AGCTGAAACAGTAAGCTCCAATG
1 AGCTGAAACAGTAAGCTCTGACA
68926710 AGCTGAAAACAGTAAGCTCT
1 AGCTG-AAACAGTAAGCTCT
68926730 TATGAGCTGA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
23 21 0.40
24 31 0.60
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCTGACA
Found at i:68926724 original size:24 final size:24
Alignment explanation
Indices: 68926687--68926741 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
68926677 AGCTTTTACA
68926687 AGCTG-AAACAGTAAGCTCCAATG
1 AGCTGAAAACAGTAAGCTCCAATG
**
68926710 AGCTGAAAACAGTAAGCTCTTATG
1 AGCTGAAAACAGTAAGCTCCAATG
68926734 AGCTGAAA
1 AGCTGAAA
68926742 TATCGATAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (24 bp):
AGCTGAAAACAGTAAGCTCCAATG
Found at i:68935839 original size:27 final size:28
Alignment explanation
Indices: 68935791--68935848 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
68935781 TAGAATGAGC
* *
68935791 ATATATAAAAAAATGTGATATAATATATA
1 ATATATAAAAAAATATGATATAAGA-ATA
*
68935820 ATATA-AAAAAAATAT-TTATAAGAATA
1 ATATATAAAAAAATATGATATAAGAATA
68935846 ATA
1 ATA
68935849 ATTATATACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 6 0.23
27 6 0.23
28 9 0.35
29 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
ATATATAAAAAAATATGATATAAGAATA
Found at i:68936269 original size:17 final size:16
Alignment explanation
Indices: 68936249--68936336 Score: 55
Period size: 16 Copynumber: 5.6 Consensus size: 16
68936239 ACGTAATACA
68936249 AGTAGAAATATAATAAT
1 AGTA-AAATATAATAAT
68936266 AGTATATAA-ATAATAAT
1 AGTA-A-AATATAATAAT
*
68936283 -GTAAAATAATAATAGTT
1 AGTAAAAT-ATAATA-AT
*
68936300 TGTAAAA-ATAAT-AT
1 AGTAAAATATAATAAT
68936314 A-TAATAA-ATAATAAT
1 AGTAA-AATATAATAAT
68936329 A-TAAAATA
1 AGTAAAATA
68936337 ATGTATAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
13 3 0.05
14 12 0.20
15 8 0.14
16 14 0.24
17 14 0.24
18 8 0.14
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (16 bp):
AGTAAAATATAATAAT
Found at i:68936337 original size:17 final size:16
Alignment explanation
Indices: 68936302--68936337 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
68936292 TAATAGTTTG
*
68936302 TAAAAATAATATATAA
1 TAAAAATAATATAAAA
68936318 TAAATAATAATATAAAA
1 TAAA-AATAATATAAAA
68936335 TAA
1 TAA
68936338 TGTATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAAATAATATAAAA
Found at i:68936337 original size:20 final size:20
Alignment explanation
Indices: 68936314--68936383 Score: 54
Period size: 20 Copynumber: 3.4 Consensus size: 20
68936304 AAAATAATAT
68936314 ATAATAAATAATAATATAAA
1 ATAATAAATAATAATATAAA
** *
68936334 ATAATGTATAATAA-A-ATA
1 ATAATAAATAATAATATAAA
*
68936352 ATTATATAATATATAATATAAA
1 ATAATA-AATA-ATAATATAAA
68936374 GATATATAAA
1 -ATA-ATAAA
68936384 CATTATGTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 9
0.68 0.15 0.17
Matches are distributed among these distances:
18 6 0.17
19 4 0.11
20 16 0.44
21 1 0.03
22 2 0.06
23 4 0.11
24 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
ATAATAAATAATAATATAAA
Found at i:68936349 original size:43 final size:44
Alignment explanation
Indices: 68936255--68936369 Score: 119
Period size: 46 Copynumber: 2.6 Consensus size: 44
68936245 TACAAGTAGA
* *
68936255 AATATAATAATAGTAT-ATAAATAATAATGTAAAATAATAATAGTT
1 AATAAAATAATA-TATAATAAATAATAATATAAAATAATAATAG-T
** *
68936300 TGTAAAAATAATATATAATAAATAATAATATAAAATAAT-GTA-T
1 AAT-AAAATAATATATAATAAATAATAATATAAAATAATAATAGT
*
68936343 AATAAAATAATTATATAATATATAATA
1 AATAAAATAA-TATATAATAAATAATA
68936370 TAAAGATATA
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
42 7 0.12
43 17 0.29
45 6 0.10
46 29 0.49
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (44 bp):
AATAAAATAATATATAATAAATAATAATATAAAATAATAATAGT
Found at i:68936381 original size:50 final size:51
Alignment explanation
Indices: 68936307--68936430 Score: 127
Period size: 50 Copynumber: 2.5 Consensus size: 51
68936297 GTTTGTAAAA
68936307 ATAATATATAATAAATAATAATATAAA-ATAATGT-ATAATAAA-ATAATTAT
1 ATAATATATAATAAATAATAATATAAACATAATGTGATAA-AAATAT-ATTAT
*
68936357 ATAATATATAATATAA-AGAT-ATATAAACATTATGTGATAAAAATATA-T-T
1 ATAATATATAATA-AATA-ATAATATAAACATAATGTGATAAAAATATATTAT
* * *
68936406 ATAATAAATAATAAGTAATGATATA
1 ATAATATATAATAAATAATAATATA
68936431 TGTTAATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
48 3 0.05
49 19 0.30
50 22 0.34
51 14 0.22
52 6 0.09
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (51 bp):
ATAATATATAATAAATAATAATATAAACATAATGTGATAAAAATATATTAT
Found at i:68937517 original size:15 final size:15
Alignment explanation
Indices: 68937497--68937531 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
68937487 TAGTGTGCCG
68937497 ATCACGGATCCTGGA
1 ATCACGGATCCTGGA
68937512 ATCACGGATCCTGGA
1 ATCACGGATCCTGGA
68937527 ATCAC
1 ATCAC
68937532 AACGCTGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (15 bp):
ATCACGGATCCTGGA
Found at i:68938592 original size:204 final size:205
Alignment explanation
Indices: 68938111--68938693 Score: 963
Period size: 205 Copynumber: 2.8 Consensus size: 205
68938101 AAATATGCTT
* *
68938111 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCAACTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
68938176 GTGAAAGCCAAATCGGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * * *
68938241 GGATCTTCTTCAGAATAAACATCTGAAGGTGAGATCTGTTGTGTATCTGCTCTCCGTCGAAGTGG
131 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
68938306 AGATGCCAGA
196 AGATGCCAGA
68938316 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * *
68938381 ATGAAAGCCAAATTAGCTATGTCTTCGATTCACTCCTTGTAAGCACAAGAATGCCAAATCATCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
68938446 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTAT-TTCTCCCCGTCGAAGTGG
131 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
68938510 AGATGCCAGA
196 AGATGCCAGA
*
68938520 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAAAAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
68938585 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
68938650 GGATCTTGCTTCAGTATAAACATCTGAAGGCT-AGATCTGCTATG
131 GGATC-TCCTTCAGTATAAACATCTGAAGG-TGAGATCTGCTATG
68938694 CTGCGGCCTA
Statistics
Matches: 352, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
204 152 0.43
205 199 0.57
206 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGG
AGATGCCAGA
Found at i:68964261 original size:27 final size:27
Alignment explanation
Indices: 68964230--68964407 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
68964220 TAAATTGTAC
*
68964230 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
68964257 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
68964283 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
68964311 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
68964339 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
68964366 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
68964393 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68964408 GACTCAATAA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:68964346 original size:82 final size:81
Alignment explanation
Indices: 68964231--68964386 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
68964221 AAATTGTACA
* * * *
68964231 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68964295 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68964312 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68964377 TGCGAGTTGA
65 TGCGAATTGA
68964387 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68964398 original size:82 final size:81
Alignment explanation
Indices: 68964227--68964407 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
68964217 GATTAAATTG
* * * *
68964227 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68964292 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68964308 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68964372 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68964390 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68964408 GACTCAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68978072 original size:22 final size:22
Alignment explanation
Indices: 68978041--68978086 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
68978031 ATGAAAAGAA
68978041 TTATTCGACACAAGACCTAGAG
1 TTATTCGACACAAGACCTAGAG
*
68978063 TTATTTGACACAAGACCTAGAG
1 TTATTCGACACAAGACCTAGAG
68978085 TT
1 TT
68978087 GGCAGCTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (22 bp):
TTATTCGACACAAGACCTAGAG
Found at i:68988945 original size:46 final size:48
Alignment explanation
Indices: 68988873--68988975 Score: 138
Period size: 46 Copynumber: 2.2 Consensus size: 48
68988863 GACAGGACAG
* * *
68988873 GACAGTAATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
* *
68988919 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
*
68988967 GACAAGAAT
1 GACAGGAAT
68988976 AATTCCTGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
46 25 0.51
47 1 0.02
48 23 0.47
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
Found at i:68993327 original size:50 final size:46
Alignment explanation
Indices: 68993224--68993335 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 46
68993214 GACAGAAATG
* *
68993224 AGCCATGTAAGTCCATATCAGATATATGGATTTGGGGACAAGAATG
1 AGCCATGTAAGTCCATATCAGATATATGGATTTGGAGACAAGAATA
* * *
68993270 AGCCATGTAAGCCCATATTAGATATATGTATGGCATTGGAGACAAGAATA
1 AGCCATGTAAGTCCATATCAGATATATGGAT----TTGGAGACAAGAATA
**
68993320 ATTCATGTAAGTCCAT
1 AGCCATGTAAGTCCAT
68993336 GTCGAAGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 28 0.52
50 26 0.48
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
AGCCATGTAAGTCCATATCAGATATATGGATTTGGAGACAAGAATA
Found at i:68997723 original size:24 final size:25
Alignment explanation
Indices: 68997672--68997797 Score: 114
Period size: 25 Copynumber: 5.1 Consensus size: 25
68997662 CACGCGATCA
* * *
68997672 AGCTTATCGATTCTCAGCTCATATG
1 AGCTTACCGATTCTCAGCTCGTAAG
68997697 AGCTTACCGATT-TCAGCTCGTAAG
1 AGCTTACCGATTCTCAGCTCGTAAG
* * * *
68997721 AGCATACTGATTCTAAGCTCTTATA-
1 AGCTTACCGATTCTCAGCTCGTA-AG
* * *
68997746 AGCTTACCTATTGT-AGCTCGTGAG
1 AGCTTACCGATTCTCAGCTCGTAAG
* *
68997770 AGCTTACTGATTCTCAGCTCGTATG
1 AGCTTACCGATTCTCAGCTCGTAAG
68997795 AGC
1 AGC
68997798 ATACATGTAC
Statistics
Matches: 79, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
23 1 0.01
24 37 0.47
25 40 0.51
26 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (25 bp):
AGCTTACCGATTCTCAGCTCGTAAG
Found at i:68997752 original size:49 final size:49
Alignment explanation
Indices: 68997680--68997789 Score: 150
Period size: 49 Copynumber: 2.2 Consensus size: 49
68997670 CAAGCTTATC
*
68997680 GATTCTCAGCTCATATGAGCTTACCGATT-TCAGCTCGTAAGAGCATACT
1 GATTCTCAGCTCATATAAGCTTACCGATTGT-AGCTCGTAAGAGCATACT
* * * * *
68997729 GATTCTAAGCTCTTATAAGCTTACCTATTGTAGCTCGTGAGAGCTTACT
1 GATTCTCAGCTCATATAAGCTTACCGATTGTAGCTCGTAAGAGCATACT
68997778 GATTCTCAGCTC
1 GATTCTCAGCTC
68997790 GTATGAGCAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
49 52 0.98
50 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (49 bp):
GATTCTCAGCTCATATAAGCTTACCGATTGTAGCTCGTAAGAGCATACT
Found at i:68998192 original size:30 final size:29
Alignment explanation
Indices: 68998154--68998255 Score: 84
Period size: 30 Copynumber: 3.4 Consensus size: 29
68998144 GACTAAATGG
68998154 TAAGTTAAATTCTATGTTATACGAACTAC
1 TAAGTTAAATTCTATGTTATACGAACTAC
** * * *
68998183 TAAGCTTAAA--CATAAATTGTGACTAAATGA-
1 TAAG-TTAAATTC-TATGTTAT-ACGAACT-AC
*
68998213 TAAGTTAAATTCTATGTTATATGAACTAC
1 TAAGTTAAATTCTATGTTATACGAACTAC
68998242 TAAGCTTAAATTCT
1 TAAG-TTAAATTCT
68998256 TACTCGATGT
Statistics
Matches: 54, Mismatches: 11, Indels: 15
0.68 0.14 0.19
Matches are distributed among these distances:
28 2 0.04
29 22 0.41
30 28 0.52
31 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (29 bp):
TAAGTTAAATTCTATGTTATACGAACTAC
Found at i:68998206 original size:59 final size:59
Alignment explanation
Indices: 68998133--68998251 Score: 211
Period size: 59 Copynumber: 2.0 Consensus size: 59
68998123 ATGTTTACTT
*
68998133 ACATAAATTATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
1 ACATAAATTATGACTAAATGATAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
* *
68998192 ACATAAATTGTGACTAAATGATAAGTTAAATTCTATGTTATATGAACTACTAAGCTTAA
1 ACATAAATTATGACTAAATGATAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
68998251 A
1 A
68998252 TTCTTACTCG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (59 bp):
ACATAAATTATGACTAAATGATAAGTTAAATTCTATGTTATACGAACTACTAAGCTTAA
Found at i:68999095 original size:12 final size:12
Alignment explanation
Indices: 68999078--68999104 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
68999068 TTAGGCTGTT
68999078 ACACGGCCTAGC
1 ACACGGCCTAGC
68999090 ACACGGCCTAGC
1 ACACGGCCTAGC
68999102 ACA
1 ACA
68999105 TAGGCATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:69004566 original size:40 final size:40
Alignment explanation
Indices: 69004487--69004704 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
69004477 AAGCCAGGTA
* * * *
69004487 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
69004526 CCTTCGGGACATAGCCCAGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69004566 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69004606 CCTTCAGGG-CTTAACCCGGATATAGTAACCCGCACAAATG
1 CCTTC-GGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
69004646 CTTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
69004686 CCTTCGGGACATAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69004705 TTATCATCCG
Statistics
Matches: 154, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 16 0.10
40 135 0.88
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69012670 original size:40 final size:40
Alignment explanation
Indices: 69012626--69012728 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
69012616 TACTCACTTG
* *
69012626 AATGCCTTCGGGACATAGCCCGGATGTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
69012666 AATGCCTTCGGGGCTTAACCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
69012706 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
69012729 TTATCATCCG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:69019158 original size:24 final size:20
Alignment explanation
Indices: 69019109--69019147 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69019099 GATCTAAAAT
69019109 AATAATTTCATTCAATTAAC
1 AATAATTTCATTCAATTAAC
69019129 AATAATTTCATTCAATTAA
1 AATAATTTCATTCAATTAA
69019148 ATAATTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAATTTCATTCAATTAAC
Found at i:69021256 original size:33 final size:33
Alignment explanation
Indices: 69021212--69021275 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
69021202 CGAAAGGCTA
* * *
69021212 TCTTAGGTGCATCATCACCCTTAATCTTTACTG
1 TCTTAGATGCATCATCACCATCAATCTTTACTG
69021245 TCTTAGATGCATCATCACCATCAATCTTTAC
1 TCTTAGATGCATCATCACCATCAATCTTTAC
69021276 CTGATAGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.25, C:0.28, G:0.09, T:0.38
Consensus pattern (33 bp):
TCTTAGATGCATCATCACCATCAATCTTTACTG
Found at i:69022862 original size:32 final size:32
Alignment explanation
Indices: 69022819--69022892 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
69022809 TTATTTTGGT
*
69022819 CTCCTCTCCTCTCTTTGCCGTCCTTCTCCTTA
1 CTCCTCCCCTCTCTTTGCCGTCCTTCTCCTTA
69022851 CTCCTCCCCTCTCTTTGCCGTCCTTCTCCTTA
1 CTCCTCCCCTCTCTTTGCCGTCCTTCTCCTTA
69022883 CTCCTCCCCT
1 CTCCTCCCCT
69022893 TTTTCTCTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.03, C:0.51, G:0.05, T:0.41
Consensus pattern (32 bp):
CTCCTCCCCTCTCTTTGCCGTCCTTCTCCTTA
Found at i:69025892 original size:22 final size:22
Alignment explanation
Indices: 69025867--69025927 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
69025857 GCAAAAACGT
*
69025867 TTGGCACACAGCTATAACTAGG
1 TTGGCACACAGCCATAACTAGG
* **
69025889 TTGGCACAGAGCCATATGTAGG
1 TTGGCACACAGCCATAACTAGG
* *
69025911 TTGGCGCAAAGCCATAA
1 TTGGCACACAGCCATAA
69025928 TCAGAATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (22 bp):
TTGGCACACAGCCATAACTAGG
Found at i:69026135 original size:41 final size:41
Alignment explanation
Indices: 69026076--69026195 Score: 204
Period size: 41 Copynumber: 2.9 Consensus size: 41
69026066 AAGCCACCGA
*
69026076 TGGATCCACGGTCATCAAGCAACCATGCAATCCTCAATCAG
1 TGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCAG
*
69026117 TGGATCCACGGCCGTCAAGCAACCATGCAATCCTCAATCAG
1 TGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCAG
* *
69026158 TGGATCCATGGTCGTCAAGCAACCATGCGATCCTCAAT
1 TGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAAT
69026196 TTCTTCCTCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCAG
Found at i:69026753 original size:27 final size:27
Alignment explanation
Indices: 69026453--69026848 Score: 212
Period size: 27 Copynumber: 14.7 Consensus size: 27
69026443 TTGGTAAATC
* *
69026453 TACAAACCAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* **
69026480 TACAAACCAATTGTATTTTTG-TAGATTT
1 TACAAATCAAGGGTA-TTTTGATA-ATTT
*
69026508 TGA-AAGTCAAGGGTATTTCT-ATAATTT
1 T-ACAAATCAAGGGTATTT-TGATAATTT
** * *
69026535 TGTAAATCAGGGGTATTTTTG-TAATTA
1 TACAAATCAAGGGTA-TTTTGATAATTT
* *
69026562 T-CTAAATCAAGTGTATTTCGATAATTT
1 TAC-AAATCAAGGGTATTTTGATAATTT
* * *
69026589 TCCAAATTAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * * *
69026616 TCCTAATCAAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * * * *
69026643 TCCTAATCGAGGGTGTTTCGATAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* ** * **
69026670 TATAGGTCGAGGGTATTTCAATAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
** * *
69026697 TACAGGTCGAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* *
69026724 TACAAACCAGGGGTATTTTGATAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * *
69026751 TACAAA-CTAGGGGTATTTTGGTAGTTT
1 TACAAATC-AAGGGTATTTTGATAATTT
* * * * *
69026778 TGCTAATCGAGGGTATTTTGGTATTTT
1 TACAAATCAAGGGTATTTTGATAATTT
* * * **
69026805 TATAAACCAAAGGTATTCAG-TAATTT
1 TACAAATCAAGGGTATTTTGATAATTT
** *
69026831 TGTAAACCAAGGGTATTT
1 TACAAATCAAGGGTATTT
69026849 CAGTAATACT
Statistics
Matches: 294, Mismatches: 62, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
26 25 0.09
27 243 0.83
28 25 0.09
29 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTTGATAATTT
Found at i:69026838 original size:26 final size:27
Alignment explanation
Indices: 69026802--69026855 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
69026792 ATTTTGGTAT
69026802 TTTTATAAACCAAAGGTA-TTCAGTAA
1 TTTTATAAACCAAAGGTATTTCAGTAA
* *
69026828 TTTTGTAAACCAAGGGTATTTCAGTAA
1 TTTTATAAACCAAAGGTATTTCAGTAA
69026855 T
1 T
69026856 ACTAGCCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (27 bp):
TTTTATAAACCAAAGGTATTTCAGTAA
Found at i:69030133 original size:27 final size:27
Alignment explanation
Indices: 69030098--69030154 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
69030088 CTTCAATAAG
* *
69030098 TTTCGATAATTTTATAGGTCGAGGGTA
1 TTTCAATAATTTTACAGGTCGAGGGTA
69030125 TTTCAATAATTTTACAGGTCGAGGGTA
1 TTTCAATAATTTTACAGGTCGAGGGTA
69030152 TTT
1 TTT
69030155 TGGTAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (27 bp):
TTTCAATAATTTTACAGGTCGAGGGTA
Found at i:69030161 original size:27 final size:26
Alignment explanation
Indices: 69030116--69030246 Score: 136
Period size: 27 Copynumber: 4.9 Consensus size: 26
69030106 ATTTTATAGG
*** *
69030116 TCGAGGGTATTTCAATAATTTTACAGG
1 TCGAGGGTATTTTGGTAATTTTACA-A
69030143 TCGAGGGTATTTTGGTAATTTTACAA
1 TCGAGGGTATTTTGGTAATTTTACAA
* *
69030169 ACCAGGGGTATTTTGGTAATTTTACAA
1 TCGA-GGGTATTTTGGTAATTTTACAA
* * * *
69030196 ACTAGGGGTATTTTGGTAGTTTTGCTAA
1 TCGA-GGGTATTTTGGTAATTTTAC-AA
69030224 TCGAGGGTATTTTGGTAATTTTA
1 TCGAGGGTATTTTGGTAATTTTA
69030247 TAAACCAAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 83 0.93
28 4 0.04
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.41
Consensus pattern (26 bp):
TCGAGGGTATTTTGGTAATTTTACAA
Found at i:69030259 original size:27 final size:27
Alignment explanation
Indices: 69030146--69030288 Score: 137
Period size: 27 Copynumber: 5.3 Consensus size: 27
69030136 TTACAGGTCG
*
69030146 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * *
69030173 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTATAAACCA
* * * * *
69030200 GGGGTATTTTGGTAGTTTTGCT-AATCG
1 AGGGTATTTTGGTAATTTT-ATAAACCA
69030227 AGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *** *
69030254 AAGGTA-TTCAATAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
69030280 AGGGTATTT
1 AGGGTATTT
69030289 CAGTAATTCT
Statistics
Matches: 94, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
26 22 0.23
27 72 0.77
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACCA
Found at i:69030276 original size:26 final size:27
Alignment explanation
Indices: 69030239--69030296 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
69030229 GGTATTTTGG
69030239 TAATTTTATAAACCAAAGGTA-TTCAA
1 TAATTTTATAAACCAAAGGTATTTCAA
* * *
69030265 TAATTTTGTAAACCAAGGGTATTTCAG
1 TAATTTTATAAACCAAAGGTATTTCAA
69030292 TAATT
1 TAATT
69030297 CTACCCTACA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
TAATTTTATAAACCAAAGGTATTTCAA
Found at i:69030308 original size:27 final size:27
Alignment explanation
Indices: 69030278--69030333 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
69030268 TTTTGTAAAC
* *
69030278 CAAGGGTATTTCAGTAATTCTACCCTA
1 CAAGGGCATTTCAGTAATACTACCCTA
*
69030305 CAAGGGCATTTCAGTAATACTAGCCTA
1 CAAGGGCATTTCAGTAATACTACCCTA
69030332 CA
1 CA
69030334 TATATGAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (27 bp):
CAAGGGCATTTCAGTAATACTACCCTA
Found at i:69033375 original size:27 final size:27
Alignment explanation
Indices: 69033341--69033396 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
69033331 ACAATCATAC
69033341 ATCACATAGGGGCATAACAATCATTTT
1 ATCACATAGGGGCATAACAATCATTTT
*
69033368 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATAGGGGCATAACAATCATTTT
69033395 AT
1 AT
69033397 TAATTATGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (27 bp):
ATCACATAGGGGCATAACAATCATTTT
Found at i:69040208 original size:28 final size:28
Alignment explanation
Indices: 69040168--69040250 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
69040158 GTCACCAAAT
*
69040168 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATAATTTGTGGCAGTGCCACCAGA
*
69040196 ACAGATAATTTGTGGCAGGGCCACCAGA
1 ACAGATAATTTGTGGCAGTGCCACCAGA
69040224 ACAGATAATTTGTGGCA-TAGCCACCAG
1 ACAGATAATTTGTGGCAGT-GCCACCAG
69040251 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (28 bp):
ACAGATAATTTGTGGCAGTGCCACCAGA
Found at i:69040403 original size:28 final size:28
Alignment explanation
Indices: 69040356--69040420 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
69040346 AAATTAACCC
*
69040356 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
69040384 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
69040412 TAGGGGTAT
1 TAGGGGTAT
69040421 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:69042955 original size:25 final size:25
Alignment explanation
Indices: 69042927--69043009 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 25
69042917 GTATGTAAAA
69042927 GGGAAGCTCTTTTGAGCCATATAAC
1 GGGAAGCTCTTTTGAGCCATATAAC
* * ***
69042952 GGGAAGCT-TATTAAGTTGTATAAC
1 GGGAAGCTCTTTTGAGCCATATAAC
** *
69042976 GGGAAGCTCTTGCGAGCCAT-TTAC
1 GGGAAGCTCTTTTGAGCCATATAAC
69043000 TGGGAAGCTC
1 -GGGAAGCTC
69043010 AAAAGAGCCA
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
24 22 0.51
25 21 0.49
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (25 bp):
GGGAAGCTCTTTTGAGCCATATAAC
Found at i:69044914 original size:37 final size:37
Alignment explanation
Indices: 69044864--69044942 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69044854 TTATTACGAA
* * *
69044864 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69044901 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69044938 GTCTT
1 GTCTT
69044943 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69045139 original size:47 final size:47
Alignment explanation
Indices: 69045063--69045321 Score: 194
Period size: 47 Copynumber: 5.1 Consensus size: 47
69045053 CTTCGGGACT
* * * * *
69045063 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
69045110 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
69045157 TATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC----ATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * * *
69045208 TATCTCATATATACGCATCTCATATATACGCTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATA--CA---C-T-T-T-CACATT--CA----TCACATCGGCCACTAGGCCC
* * *
69045270 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
69045317 TATCA
1 TATCA
69045322 TCATTTCATA
Statistics
Matches: 177, Mismatches: 16, Indels: 38
0.77 0.07 0.16
Matches are distributed among these distances:
47 77 0.44
49 2 0.01
51 47 0.27
52 1 0.01
53 5 0.03
54 2 0.01
55 2 0.01
56 5 0.03
57 1 0.01
58 2 0.01
60 2 0.01
62 31 0.18
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:69045229 original size:15 final size:15
Alignment explanation
Indices: 69045209--69045238 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69045199 ATTAGGCCTT
69045209 ATCTCATATATACGC
1 ATCTCATATATACGC
69045224 ATCTCATATATACGC
1 ATCTCATATATACGC
69045239 TTTCACATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
ATCTCATATATACGC
Found at i:69045242 original size:62 final size:62
Alignment explanation
Indices: 69045167--69045283 Score: 207
Period size: 62 Copynumber: 1.9 Consensus size: 62
69045157 TATCACATAT
*
69045167 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACGCATCTC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCATCTC
* *
69045229 ATATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69045284 ACTTTCACAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 52 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.33
Consensus pattern (62 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCATCTC
Found at i:69049221 original size:40 final size:40
Alignment explanation
Indices: 69049165--69049280 Score: 169
Period size: 40 Copynumber: 2.9 Consensus size: 40
69049155 GAATACACGT
* * *
69049165 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
69049205 CACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACAT
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
69049245 CACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
69049281 TTAGTAACTC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAA
Found at i:69049305 original size:40 final size:40
Alignment explanation
Indices: 69049181--69049398 Score: 173
Period size: 40 Copynumber: 5.5 Consensus size: 40
69049171 CATGATTGCT
* *
69049181 CTTCGGGACCTAGCCCGGATATA--ACAC-CAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTA-ACTC-GCACCAATGC
* * * * **
69049220 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATGC
*
69049260 TCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATGC
* *
69049301 CTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACCAATGC
* * * * *
69049340 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACCAATGC
69049380 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
69049399 CATCATTCGA
Statistics
Matches: 145, Mismatches: 24, Indels: 18
0.78 0.13 0.10
Matches are distributed among these distances:
38 2 0.01
39 32 0.22
40 91 0.63
41 20 0.14
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATGC
Found at i:69049305 original size:80 final size:79
Alignment explanation
Indices: 69049164--69049318 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 79
69049154 TGAATACACG
* *
69049164 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACCAATGCTCTTCGG-A
69049229 CTTAGCCCGGATACA
65 CTTAGCCCGGATACA
* * *
69049244 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-CTTCG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACCAATGCTCTTCG
*
69049306 GGCTTAGCCCGGA
63 GACTTAGCCCGGA
69049319 ATTAGTATCT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
79 11 0.17
80 39 0.59
81 9 0.14
82 3 0.05
83 4 0.06
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (79 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACCAATGCTCTTCGGAC
TTAGCCCGGATACA
Found at i:69049744 original size:29 final size:29
Alignment explanation
Indices: 69049705--69049783 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
69049695 CTTAATAATC
*
69049705 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69049735 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69049764 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69049784 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69051728 original size:37 final size:37
Alignment explanation
Indices: 69051678--69051756 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69051668 TTATTACGAA
* * *
69051678 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69051715 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69051752 GTCTT
1 GTCTT
69051757 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69051953 original size:47 final size:47
Alignment explanation
Indices: 69051875--69052167 Score: 442
Period size: 47 Copynumber: 6.1 Consensus size: 47
69051865 CCCTTCGGGA
* * * * * *
69051875 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69051922 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69051969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69052016 CCTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69052067 CTTATCTCATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69052114 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69052161 CTTATCA
1 CTTATCA
69052168 TCATTTCATA
Statistics
Matches: 225, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 180 0.80
51 45 0.20
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69052149 original size:145 final size:145
Alignment explanation
Indices: 69051886--69052167 Score: 465
Period size: 145 Copynumber: 1.9 Consensus size: 145
69051876 TTATCACATT
* * * *
69051886 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
69051951 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69052016 CCTATCACATATATA
131 CCTATCACATATATA
* * * * *
69052031 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACGCTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
*
69052096 TCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69052161 CTTATCA
131 CCTATCA
69052168 TCATTTCATA
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
145 126 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (145 bp):
TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CCTATCACATATATA
Found at i:69057545 original size:55 final size:54
Alignment explanation
Indices: 69057390--69057596 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 54
69057380 TTCCTTTTTA
* * * *
69057390 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
69057443 AACTCAACATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
69057497 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
69057552 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
69057597 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.36
54 38 0.31
55 41 0.33
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTAACAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:69062061 original size:45 final size:45
Alignment explanation
Indices: 69061959--69062266 Score: 390
Period size: 45 Copynumber: 6.9 Consensus size: 45
69061949 TTTTCTCAAA
** * * *
69061959 TCACCGGCATTTTA-CCTGCTAGGCTC-GAGGCCCGATTA-TCATT
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
69062002 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCTGAATAGTATC
1 TCACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* * *
69062047 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
69062092 TCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAATGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
69062137 TCACTGGCATAATAGCCTACTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
69062182 TCACCGGCATAATAGCCTGATAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
69062227 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCTGAATA
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
69062267 TAATACCAAC
Statistics
Matches: 236, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
43 13 0.06
44 15 0.06
45 206 0.87
46 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:69062307 original size:38 final size:38
Alignment explanation
Indices: 69062264--69062344 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 38
69062254 AAAGGCCTGA
* *
69062264 ATATAATACCAACACTAGGCCTGCAGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGCAGGATTTAACCCGG
* *
69062302 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGCAGGATTTAACCCGG
69062340 ATATA
1 ATATA
69062345 CATCAAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.21
Consensus pattern (38 bp):
ATATAATACCAACACGAAGCCTGCAGGATTTAACCCGG
Found at i:69075806 original size:79 final size:79
Alignment explanation
Indices: 69075682--69075937 Score: 322
Period size: 79 Copynumber: 3.2 Consensus size: 79
69075672 AAACCAAGTA
* * *
69075682 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGAACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATA
*
69075745 GTAAC-CGCACAAGTG
64 GTAACTCGCACAAATG
* * * * *
69075760 CCTTTGGAATTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC-GGTATAG
69075825 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
69075840 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAG
* *
69075904 TCACTAGCACAAATG
65 TAACTCGCACAAATG
*
69075919 CCTTCGGGACTTAGCCCGG
1 CCTTCGGAACTTAGCCCGG
69075938 TTATCATCCG
Statistics
Matches: 158, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
78 16 0.10
79 89 0.56
80 53 0.34
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTATAGT
AACTCGCACAAATG
Found at i:69075814 original size:40 final size:40
Alignment explanation
Indices: 69075715--69075941 Score: 325
Period size: 40 Copynumber: 5.7 Consensus size: 40
69075705 GCTACTTGCT
69075715 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAAC-CGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
69075754 CAAGTGCCTTTGGAATTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69075794 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69075834 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
69075874 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
69075913 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
69075942 CATCCGAATA
Statistics
Matches: 169, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 66 0.39
40 101 0.60
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:69075914 original size:119 final size:119
Alignment explanation
Indices: 69075715--69075935 Score: 329
Period size: 119 Copynumber: 1.9 Consensus size: 119
69075705 GCTACTTGCT
* * * * * *
69075715 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACCGCACAAGTGCCTTTGGAATTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACAGCACAAATGCCTTCGGAACTTAGCCCGGA
*
69075780 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
66 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
*
69075834 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG-GCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC-AGCACAAATGCCTTCGGAACTTAGCCCGG
*
69075898 A-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
65 ATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
69075936 GGTTATCATC
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
118 1 0.01
119 76 0.84
120 14 0.15
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACAGCACAAATGCCTTCGGAACTTAGCCCGGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
Found at i:69080701 original size:39 final size:40
Alignment explanation
Indices: 69080644--69080743 Score: 139
Period size: 39 Copynumber: 2.5 Consensus size: 40
69080634 TGGATGAAAA
* *
69080644 CCGGGCTAAGTCCTGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAAT
* ** *
69080683 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAAT
69080723 CCGGGCTAAGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
69080744 ATTGTGCGAG
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
39 30 0.56
40 24 0.44
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAAT
Found at i:69080734 original size:40 final size:39
Alignment explanation
Indices: 69080644--69080794 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 39
69080634 TGGATGAAAA
* * ** * *
69080644 CCGGGCTAAGTCCTGAAGGCATCTGCACTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
69080683 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
69080723 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* * *
69080763 CCGGGCTATGTCCCAAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69080795 AGTTATATCC
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 30 0.31
40 64 0.65
41 2 0.02
42 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Done.