Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 208 of 320
Found at i:69480159 original size:79 final size:80
Alignment explanation
Indices: 69480068--69480224 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
69480058 AACCCAGTTA
* * * *
69480068 TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCGCAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
69480131 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * *
69480147 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
69480212 GACTTAGCCCGGA
66 GACTTAGCCCGGA
69480225 CATCATTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 45 0.68
80 18 0.27
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:69488251 original size:39 final size:40
Alignment explanation
Indices: 69488134--69488314 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
69488124 GCTACTCGTT
*
69488134 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
69488174 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGC-A
* *
69488215 -AAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
69488253 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69488294 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
69488315 TGGACATCAT
Statistics
Matches: 119, Mismatches: 15, Indels: 14
0.80 0.10 0.09
Matches are distributed among these distances:
38 3 0.03
39 31 0.26
40 71 0.60
41 14 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69496221 original size:7 final size:7
Alignment explanation
Indices: 69496211--69496237 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
69496201 AATGATGAAT
69496211 GATGAGG
1 GATGAGG
69496218 GATGAGG
1 GATGAGG
69496225 GATGAGG
1 GATGAGG
69496232 GATGAG
1 GATGAG
69496238 TAGAAATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.56, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:69498083 original size:26 final size:25
Alignment explanation
Indices: 69498038--69498087 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
69498028 TCATTCATTT
69498038 ATTAAAACATACTTATGAAAGAAATG
1 ATTAAAACATACTTATGAAA-AAATG
69498064 ATTAAAACATACTTGA-GAAAAAAT
1 ATTAAAACATACTT-ATGAAAAAAT
69498088 TTAAAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 4 0.17
26 18 0.78
27 1 0.04
ACGTcount: A:0.56, C:0.08, G:0.10, T:0.26
Consensus pattern (25 bp):
ATTAAAACATACTTATGAAAAAATG
Found at i:69510401 original size:40 final size:40
Alignment explanation
Indices: 69510357--69510445 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
69510347 AAAGTGCAGT
*
69510357 CAGGGGCACGAA-TATGCTAATAAGGACACTGAAGTGTTTA
1 CAGGGGCAC-AATTATGCAAATAAGGACACTGAAGTGTTTA
* * *
69510397 CAGGGGCACAATTGTGCAAATAGGGACATTGAAGTGTTTA
1 CAGGGGCACAATTATGCAAATAAGGACACTGAAGTGTTTA
69510437 CAGGGGCAC
1 CAGGGGCAC
69510446 TGGCTGCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (40 bp):
CAGGGGCACAATTATGCAAATAAGGACACTGAAGTGTTTA
Found at i:69512515 original size:46 final size:45
Alignment explanation
Indices: 69512462--69512637 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
69512452 TATTTGGGCA
69512462 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
69512508 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* ** *
69512555 TCCGAGCTCGTTGAGTTGAGTATGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
69512601 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69512638 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 67 0.64
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69514354 original size:27 final size:27
Alignment explanation
Indices: 69514323--69514380 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
69514313 ACAATCATAC
*
69514323 ATCACATAAGGACAAAACAGTCATTTT
1 ATCACATAAGGACAAAACAATCATTTT
* * *
69514350 ATCACATAGGGGCATAACAATCATTTT
1 ATCACATAAGGACAAAACAATCATTTT
69514377 ATCA
1 ATCA
69514381 ATTAGAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (27 bp):
ATCACATAAGGACAAAACAATCATTTT
Found at i:69518132 original size:27 final size:27
Alignment explanation
Indices: 69518100--69518154 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
69518090 ATCATACATT
*
69518100 ACATAGGGGCAAAATAATCATTTTATC
1 ACATAGGGGCAAAACAATCATTTTATC
* *
69518127 ACATAGGGGCATAACAGTCATTTTATC
1 ACATAGGGGCAAAACAATCATTTTATC
69518154 A
1 A
69518155 ATTAGAGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
ACATAGGGGCAAAACAATCATTTTATC
Found at i:69520135 original size:17 final size:17
Alignment explanation
Indices: 69520113--69520145 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
69520103 AAAACCCTTT
69520113 ATCAATTCTAAT-ATTTA
1 ATCAATT-TAATCATTTA
69520130 ATCAATTTAATCATTT
1 ATCAATTTAATCATTT
69520146 TCTCAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
ATCAATTTAATCATTTA
Found at i:69524951 original size:27 final size:28
Alignment explanation
Indices: 69524882--69524956 Score: 109
Period size: 27 Copynumber: 2.7 Consensus size: 28
69524872 ATAGGAAAAC
* *
69524882 AAAATAAACATAAAAAGAAAGAAAAATA
1 AAAATAAACATAAAGATAAAGAAAAATA
69524910 AAAATAAACATAAAGATAAA-AAAACA-A
1 AAAATAAACATAAAGATAAAGAAAA-ATA
69524937 AAAATAAACATAAAGATAAA
1 AAAATAAACATAAAGATAAA
69524957 TGGACTCAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.12
Consensus pattern (28 bp):
AAAATAAACATAAAGATAAAGAAAAATA
Found at i:69526596 original size:20 final size:19
Alignment explanation
Indices: 69526528--69526598 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 19
69526518 TATAAAGGAA
*
69526528 AAAATAAATAATAATAATAG
1 AAAATAAATAATAATAA-AT
69526548 AAAATAAATAATAA-AGAATT
1 AAAATAAATAATAATA-AA-T
69526568 AAGGCAATAAATAATAATTAAAT
1 AA---AATAAATAATAA-TAAAT
69526591 AAAATAAA
1 AAAATAAA
69526599 GAAAATGGGG
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
19 2 0.05
20 23 0.53
23 15 0.35
24 2 0.05
25 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (19 bp):
AAAATAAATAATAATAAAT
Found at i:69530236 original size:13 final size:13
Alignment explanation
Indices: 69530218--69530246 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
69530208 GCTTAGCAGG
69530218 GACACGCCCGTGT
1 GACACGCCCGTGT
69530231 GACACGCCCGTGT
1 GACACGCCCGTGT
69530244 GAC
1 GAC
69530247 GTGATTGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.38, G:0.31, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:69533293 original size:25 final size:25
Alignment explanation
Indices: 69533259--69533315 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
69533249 TCATGTGCTC
69533259 TCCTCTGCGTC-CCCCCATTAGGTCT
1 TCCTCTGCGTCTCCCCC-TTAGGTCT
*
69533284 TCCTTTGCGTCTCCCCCTTAGGTCT
1 TCCTCTGCGTCTCCCCCTTAGGTCT
69533309 TCCTCTG
1 TCCTCTG
69533316 GTATGTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.05, C:0.42, G:0.16, T:0.37
Consensus pattern (25 bp):
TCCTCTGCGTCTCCCCCTTAGGTCT
Found at i:69535209 original size:49 final size:50
Alignment explanation
Indices: 69535156--69535297 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 50
69535146 AAGGTGGAAG
69535156 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAT-ATAT
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAATGATAT
* * ** * *
69535205 CAGTGGCAGTATATCTACATATCAGTGGTCACTTGTCCACAAAGTGTTAT
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAATGATAT
* * * * *
69535255 TAGTGGTAGTTTATCTGCAAACCAGTGGTGGCTTATCCACAAA
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAA
69535298 TGGTGTTTCT
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
49 40 0.52
50 37 0.48
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (50 bp):
CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAATGATAT
Found at i:69538523 original size:15 final size:15
Alignment explanation
Indices: 69538503--69538567 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
69538493 GTATCTTGGG
69538503 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
69538518 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
69538533 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
* *
69538548 TTTTTTTATTC-GGT
1 TTTCTTTATTCTGGA
69538562 TTTCTT
1 TTTCTT
69538568 GTTATTTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 11 0.26
15 27 0.64
16 4 0.10
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69538535 original size:30 final size:31
Alignment explanation
Indices: 69538499--69538567 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
69538489 TATCGTATCT
69538499 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
*
69538529 TGGGTTT-TTCTATCTTGGATTTTTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
69538559 -GGTTTTCTT
1 TGGGTTTCTT
69538568 GTTATTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.09, C:0.12, G:0.17, T:0.62
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:69540872 original size:49 final size:49
Alignment explanation
Indices: 69540706--69540930 Score: 299
Period size: 49 Copynumber: 4.5 Consensus size: 49
69540696 TGAGGTCGCA
* * * *
69540706 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAA-T-TGGTCACG
* **
69540757 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
*
69540807 TGTGTCGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
69540856 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
*
69540905 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
69540931 TGCGTACTAG
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
49 78 0.50
50 46 0.29
51 32 0.21
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:69540880 original size:99 final size:100
Alignment explanation
Indices: 69540699--69540938 Score: 315
Period size: 99 Copynumber: 2.4 Consensus size: 100
69540689 TCTATTGTGA
* *
69540699 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACGTGTGTAG
* **
69540764 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
69540799 AGGTCACGTGTGTCGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAA-T-TGGTCACGTGTGT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-GAAAACTGTGATCACGTGTGT
*
69540861 AGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
64 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
69540898 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACT
69540939 AGATAGCTTT
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
98 34 0.28
99 45 0.38
100 2 0.02
101 39 0.32
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:69544041 original size:25 final size:25
Alignment explanation
Indices: 69544013--69544086 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
69544003 ATTCCGACCC
*
69544013 ATAGCTCGTGTGAGCATACCGATTT
1 ATAGCTCGTGTGAGCATACAGATTT
** *
69544038 ATAGCTCGTGAAAGCATACAGATCT
1 ATAGCTCGTGTGAGCATACAGATTT
* ** *
69544063 ACAGCTCAAGTGAGCATACTGATT
1 ATAGCTCGTGTGAGCATACAGATT
69544087 CACAACTCGT
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
ATAGCTCGTGTGAGCATACAGATTT
Found at i:69547313 original size:27 final size:27
Alignment explanation
Indices: 69547282--69547459 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69547272 TAAATTGTAC
69547282 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69547309 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69547335 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69547363 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69547391 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69547418 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69547445 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69547460 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69547396 original size:82 final size:81
Alignment explanation
Indices: 69547283--69547438 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69547273 AAATTGTACA
* *
69547283 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
69547347 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
69547364 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
69547429 TGCGAGTTGA
65 TGCGAATTGA
69547439 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:69547450 original size:82 final size:81
Alignment explanation
Indices: 69547279--69547459 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
69547269 GATTAAATTG
* *
69547279 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69547344 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
69547360 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
69547424 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69547442 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69547460 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69555500 original size:27 final size:27
Alignment explanation
Indices: 69555469--69555646 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69555459 TAAATTGTAC
69555469 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69555496 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69555522 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69555550 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69555578 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69555605 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69555632 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69555647 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69555583 original size:82 final size:81
Alignment explanation
Indices: 69555470--69555625 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69555460 AAATTGTACA
* *
69555470 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
69555534 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
69555551 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
69555616 TGCGAGTTGA
65 TGCGAATTGA
69555626 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:69555637 original size:82 final size:81
Alignment explanation
Indices: 69555466--69555646 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
69555456 GATTAAATTG
* *
69555466 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69555531 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
69555547 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
69555611 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69555629 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69555647 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69558719 original size:111 final size:114
Alignment explanation
Indices: 69558544--69558887 Score: 463
Period size: 111 Copynumber: 3.1 Consensus size: 114
69558534 TTACCAAATT
69558544 TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACTTGGAAATTAATATT
1 TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACTTGGAAATTAATATT
69558609 CTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTC
66 CTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTC
* * *
69558658 TATTAATA-AAATAGTT-TATTAATTAATTT-AGTTAAAATATAAAAGA-TATGGAAATTAATAT
1 TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACT-TGGAAATTAATAT
* * ** * ** * *** *
69558719 TCGTTTGGAAAGAATATAATT-AAATAT-TAA-TTTATATATTTTACAAATT
65 TCTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCAT-TTGT-CTTCTC
69558768 TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACTT-GAAATTAATATT
1 TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACTTGGAAATTAATATT
69558832 CTTTTGAAAA-AATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTC
66 CTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTC
69558880 TATTAATA
1 TATTAATA
69558888 AGGAATAATT
Statistics
Matches: 190, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
108 5 0.03
109 6 0.03
110 14 0.07
111 63 0.33
112 59 0.31
113 29 0.15
114 14 0.07
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.43
Consensus pattern (114 bp):
TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACTTGGAAATTAATATT
CTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTC
Found at i:69558950 original size:72 final size:74
Alignment explanation
Indices: 69558831--69558969 Score: 212
Period size: 72 Copynumber: 1.9 Consensus size: 74
69558821 AAATTAATAT
* *
69558831 TCTTTTGAAAAAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAG-GAATA
1 TCTTTTGAAAAAATATAATTCATTTTTCTAACTTTCCATTTGACTTCTATATTAATAAGAGAATA
69558895 ATTCTATAC
66 ATTCTATAC
* *
69558904 TCTTTTAGAAAGAATATAA-T-ATTTTTTTAACTTTCCATTTGACTTCTATATTAATAAGAGAAT
1 TCTTTT-GAAAAAATATAATTCATTTTTCTAACTTTCCATTTGACTTCTATATTAATAAGAGAAT
69558967 AAT
65 AAT
69558970 CTTGGTTTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 35 0.58
73 14 0.23
74 11 0.18
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.46
Consensus pattern (74 bp):
TCTTTTGAAAAAATATAATTCATTTTTCTAACTTTCCATTTGACTTCTATATTAATAAGAGAATA
ATTCTATAC
Found at i:69559376 original size:18 final size:17
Alignment explanation
Indices: 69559353--69559395 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
69559343 TTTAAATTTT
69559353 TATAATAATA-AAATATAA
1 TATAATAA-AGAAATA-AA
69559371 TATAATAAAGAAATAAA
1 TATAATAAAGAAATAAA
69559388 TATCAATA
1 TAT-AATA
69559396 GATTGAAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
TATAATAAAGAAATAAA
Found at i:69566012 original size:19 final size:21
Alignment explanation
Indices: 69565968--69566009 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
69565958 TTGAAATATA
69565968 TAATTATCTTTACAATAGAAT
1 TAATTATCTTTACAATAGAAT
69565989 TAATTAT-TTTA-AATA-AAT
1 TAATTATCTTTACAATAGAAT
69566007 TAA
1 TAA
69566010 ATTTAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
20 4 0.19
21 7 0.33
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (21 bp):
TAATTATCTTTACAATAGAAT
Found at i:69567349 original size:14 final size:14
Alignment explanation
Indices: 69567330--69567361 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
69567320 ATTTTAGGGT
69567330 TGTGAAACTGAGAC
1 TGTGAAACTGAGAC
*
69567344 TGTGAAATTGAGAC
1 TGTGAAACTGAGAC
69567358 TGTG
1 TGTG
69567362 TAAGACTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (14 bp):
TGTGAAACTGAGAC
Found at i:69574039 original size:24 final size:23
Alignment explanation
Indices: 69574012--69574081 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
69574002 CAACAGGAAA
69574012 CTCAGAAGAGTTTTAATCAGGGAG
1 CTCAGAAGAGTTTT-ATCAGGGAG
* * * *
69574036 CTCA-TAGAGCTTTAT-AGGTAA
1 CTCAGAAGAGTTTTATCAGGGAG
*
69574057 CTCCGAAGAGTTATTATCAGGGAG
1 CTCAGAAGAGTT-TTATCAGGGAG
69574081 C
1 C
69574082 ACCAGATAAG
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
21 7 0.21
22 7 0.21
23 11 0.32
24 9 0.26
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (23 bp):
CTCAGAAGAGTTTTATCAGGGAG
Found at i:69576874 original size:19 final size:19
Alignment explanation
Indices: 69576850--69576887 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
69576840 TCGATACTAC
69576850 CACCACCAAACCACCACTT
1 CACCACCAAACCACCACTT
* *
69576869 CACCACCATAGCACCACTT
1 CACCACCAAACCACCACTT
69576888 TACCTTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.50, G:0.03, T:0.13
Consensus pattern (19 bp):
CACCACCAAACCACCACTT
Found at i:69577866 original size:15 final size:14
Alignment explanation
Indices: 69577841--69577870 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
69577831 CCACATATGT
69577841 GATGGTGTGTTTTG
1 GATGGTGTGTTTTG
69577855 GATGGATGTGTTTTG
1 GATGG-TGTGTTTTG
69577870 G
1 G
69577871 GGAACCCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.10, C:0.00, G:0.43, T:0.47
Consensus pattern (14 bp):
GATGGTGTGTTTTG
Found at i:69579208 original size:28 final size:28
Alignment explanation
Indices: 69579177--69579242 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
69579167 AAATAGCCTG
* *
69579177 CAGTAACAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAGTCTGGGCCTAAGCCCAATA
* *
69579205 CAGTAACAGTGTGGGCCTAAGCCCAATT
1 CAGTAACAGTCTGGGCCTAAGCCCAATA
*
69579233 CAGTATCAGT
1 CAGTAACAGT
69579243 ACAGTGCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTAAGCCCAATA
Found at i:69579296 original size:21 final size:21
Alignment explanation
Indices: 69579271--69579327 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
69579261 CCACCCCAAT
*
69579271 CCAACCAACACACCACCTGTA
1 CCAACCAACACACCACCCGTA
69579292 CCAACCAACACACCACCCGTA
1 CCAACCAACACACCACCCGTA
*
69579313 CCAACCAAGACACCA
1 CCAACCAACACACCA
69579328 ATATCACAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.49, G:0.05, T:0.05
Consensus pattern (21 bp):
CCAACCAACACACCACCCGTA
Found at i:69579432 original size:28 final size:26
Alignment explanation
Indices: 69579368--69579433 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
69579358 AACAATGCTG
69579368 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGCAAAGCCA
* *
69579395 CCAGA-GCAGTAACTACGTGGCAAAGCCA
1 CTA-ATACAGTAA--ACGTGGCAAAGCCA
69579423 CTAATACAGTA
1 CTAATACAGTA
69579434 CTTCTTCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
26 6 0.19
27 3 0.10
28 22 0.71
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGCAAAGCCA
Found at i:69585279 original size:34 final size:33
Alignment explanation
Indices: 69585241--69585321 Score: 126
Period size: 34 Copynumber: 2.4 Consensus size: 33
69585231 TTAGCCCCTC
69585241 TTTCAGTAGCAGTAGCAGTCTGGGCCTAAGCCCA
1 TTTCAGTA-CAGTAGCAGTCTGGGCCTAAGCCCA
* *
69585275 TTTCAGTAACAGTGGCAGTCTGGGCCTTAGCCCA
1 TTTCAGT-ACAGTAGCAGTCTGGGCCTAAGCCCA
69585309 TTTCAGTACAGTA
1 TTTCAGTACAGTA
69585322 TGCAAACAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.12
34 37 0.86
35 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (33 bp):
TTTCAGTACAGTAGCAGTCTGGGCCTAAGCCCA
Found at i:69586612 original size:10 final size:10
Alignment explanation
Indices: 69586599--69586623 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69586589 AAAGAGCAGG
69586599 GAAGAGAAAA
1 GAAGAGAAAA
69586609 GAAGAGAAAA
1 GAAGAGAAAA
69586619 GAAGA
1 GAAGA
69586624 CAAGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (10 bp):
GAAGAGAAAA
Found at i:69597075 original size:24 final size:24
Alignment explanation
Indices: 69597030--69597075 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
69597020 TAAGTACTTT
*
69597030 TTATTTCATTTTCCTTTATTATTA
1 TTATTTCATTTTACTTTATTATTA
*
69597054 TTATTTCAATTTTAGTTT-TTAT
1 TTATTTC-ATTTTACTTTATTAT
69597076 AATTTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.22, C:0.09, G:0.02, T:0.67
Consensus pattern (24 bp):
TTATTTCATTTTACTTTATTATTA
Found at i:69602690 original size:34 final size:34
Alignment explanation
Indices: 69602652--69602727 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
69602642 TTAGCCCCTC
* *
69602652 TTTCAGTAGCAGTAGCAGTCTGGGCCTGAGCCCA
1 TTTCAGTAACAGTAGCAGCCTGGGCCTGAGCCCA
* *
69602686 TTTCAGTAACAGTGGCAGCCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAGCAGCCTGGGCCTGAGCCCA
69602720 TTTCAGTA
1 TTTCAGTA
69602728 CATTATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAGCCTGGGCCTGAGCCCA
Found at i:69611335 original size:40 final size:40
Alignment explanation
Indices: 69611276--69611409 Score: 142
Period size: 40 Copynumber: 3.4 Consensus size: 40
69611266 GGTTATTTGT
* * *
69611276 GGCACTTAGTATGCAATACGACATAGCTTCAACTATATAG
1 GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAC
* **
69611316 GGCACTTAGTGTGCGATACGATATAGCTTCGGCTATATAC
1 GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAC
* * ** * * *
69611356 GACACCTAGTGTGCGATTTGAGATAGCTTCATCTATGTAC
1 GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAC
*
69611396 AGCACTTAGTGTGC
1 GGCACTTAGTGTGC
69611410 AAATTATTAG
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (40 bp):
GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAC
Found at i:69611451 original size:28 final size:28
Alignment explanation
Indices: 69611420--69611479 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
69611410 AAATTATTAG
*
69611420 GTATAGCACTTAGTGTGTGAGATATCGA
1 GTATAGCACTTAGTGTGCGAGATATCGA
* *
69611448 GTATGGCACTTAGTGTGCGAGATATTGA
1 GTATAGCACTTAGTGTGCGAGATATCGA
69611476 GTAT
1 GTAT
69611480 TCAACGACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33
Consensus pattern (28 bp):
GTATAGCACTTAGTGTGCGAGATATCGA
Found at i:69631241 original size:20 final size:20
Alignment explanation
Indices: 69631216--69631255 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
69631206 ACCACTCTAT
69631216 TTAC-TTCCTATTCCATTTAC
1 TTACTTTCC-ATTCCATTTAC
*
69631236 TTACTTTCCATTTCATTTAC
1 TTACTTTCCATTCCATTTAC
69631256 ATAGCATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.20, C:0.28, G:0.00, T:0.53
Consensus pattern (20 bp):
TTACTTTCCATTCCATTTAC
Found at i:69631246 original size:15 final size:16
Alignment explanation
Indices: 69631214--69631248 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
69631204 GAACCACTCT
*
69631214 ATTTACTTCCTATTCC
1 ATTTACTTACTATTCC
69631230 ATTTACTTACT-TTCC
1 ATTTACTTACTATTCC
69631245 ATTT
1 ATTT
69631249 CATTTACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.20, C:0.26, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTACTTACTATTCC
Found at i:69642314 original size:25 final size:26
Alignment explanation
Indices: 69642284--69642335 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
69642274 TCATCTTTTC
* * *
69642284 CAAAACCAAATTTTAGGAAAAAATTT
1 CAAACCCAAATTTGAGAAAAAAATTT
*
69642310 CAAACCCTAATTTGAGAAAAAAATTT
1 CAAACCCAAATTTGAGAAAAAAATTT
69642336 AACATTCCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.27
Consensus pattern (26 bp):
CAAACCCAAATTTGAGAAAAAAATTT
Found at i:69647401 original size:43 final size:44
Alignment explanation
Indices: 69647353--69647499 Score: 183
Period size: 43 Copynumber: 3.4 Consensus size: 44
69647343 TCCAAGATGA
* * *
69647353 GATTACATGTAAGACCATGTGTGGGACATTGGCATTGTAT-TGT
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATATGT
* * *
69647396 GATTACGTGTAAGACTATGTTTGGGACATTGACATCGT-TATAT
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATATGT
* *
69647439 GATTTCGTGTAAGACCATGTTTGGGACATTGGCATCG-ATATGA
1 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATATGT
* *
69647482 GATAACTTGTAAGACCAT
1 GATTACGTGTAAGACCAT
69647500 ATCTGGGATA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.01
43 87 0.99
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATATGT
Found at i:69657818 original size:43 final size:43
Alignment explanation
Indices: 69657768--69657917 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
69657758 TATCCCAGAT
* * *
69657768 ATGGTCTTACATGTTATCAC-ATATTGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCACAATA-CGATGCCAATGTCCTAGAC
* * * * *
69657811 AGGGTCTTATATGAAATCATAATACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCTAGAC
* * *
69657854 ATGGTCTTACACGTAATCACAATACAATGCGAATGT-CTCAGAC
1 ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCT-AGAC
69657897 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACATGTAATCACA
69657918 TCTTGATAAC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 84 0.95
44 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCTAGAC
Found at i:69661127 original size:12 final size:12
Alignment explanation
Indices: 69661110--69661140 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69661100 TATGAGGAGT
69661110 TGAGGAGAGATA
1 TGAGGAGAGATA
69661122 TGAGGAGAGATA
1 TGAGGAGAGATA
*
69661134 TTAGGAG
1 TGAGGAG
69661141 GAAATCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (12 bp):
TGAGGAGAGATA
Found at i:69662289 original size:27 final size:27
Alignment explanation
Indices: 69662251--69662563 Score: 308
Period size: 27 Copynumber: 11.6 Consensus size: 27
69662241 TCGGCCATGT
69662251 ATGACCGAAATACCCCCATAAGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
* *
69662278 ATGACAGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
** * *
69662305 ATGATTGAAATACCTCTATAAGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
*
69662332 ATGACCGAAATACCCCCA-AGGGGTAAA
1 ATGACCGAAATACCCCCATA-AGGTAAA
* * *
69662359 ATGATCGAAACAGCCCCAT-AGGATAAA
1 ATGACCGAAATACCCCCATAAGG-TAAA
* * *
69662386 ATGACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
*
69662413 ATGACCGAAATACCCCCATAAGGGAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
* *
69662440 ATGACCAAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
*
69662467 ATGACCGAAATACCCCGAT-AGGATAAA
1 ATGACCGAAATACCCCCATAAGG-TAAA
* * ** *
69662494 ATGACTGTAATACCCCTGTACGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
* * ** *
69662521 ATGACTGTAATACCCCTGTAGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAA
* * *
69662548 ATAACTGTAATACCCC
1 ATGACCGAAATACCCC
69662564 TGTAGGGAAA
Statistics
Matches: 241, Mismatches: 39, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.02
27 232 0.96
28 4 0.02
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.18
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAAGGTAAA
Found at i:69662342 original size:54 final size:54
Alignment explanation
Indices: 69662251--69662579 Score: 349
Period size: 54 Copynumber: 6.1 Consensus size: 54
69662241 TCGGCCATGT
*
69662251 ATGACCGAAATACCCCCATAAGGTAAAATGACAGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAA
** * *
69662305 ATGATTGAAATACCTCTATAAGGTAAAATGACCGAAATACCCCCA-AGGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATA-GGGTAAA
* * * * *
69662359 ATGATCGAAACAGCCCCAT-AGGATAAAATGACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAAGG-TAAAATGACCGAAATACCCCCATAGGGTAAA
* *
69662413 ATGACCGAAATACCCCCATAAGGGAAAATGACCAAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAA
* * * ** *
69662467 ATGACCGAAATACCCCGAT-AGGATAAAATGACTGTAATACCCCTGTACGGTAAA
1 ATGACCGAAATACCCCCATAAGG-TAAAATGACCGAAATACCCCCATAGGGTAAA
* * ** * * * * ** *
69662521 ATGACTGTAATACCCCTGTAGGGTAAAATAACTGTAATACCCCTGTAGGGAAAA
1 ATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAA
69662575 ATGAC
1 ATGAC
69662580 TATAATACCT
Statistics
Matches: 236, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
53 7 0.03
54 223 0.94
55 6 0.03
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (54 bp):
ATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAA
Found at i:69662386 original size:81 final size:80
Alignment explanation
Indices: 69662251--69662660 Score: 362
Period size: 81 Copynumber: 5.1 Consensus size: 80
69662241 TCGGCCATGT
* **
69662251 ATGACCGAAATACCCCCATAAGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGATTGAAAT
1 ATGACCGAAATACCCCCATAGGGTAAAATGAC-GAAATACCCCCATAGGGTAAAATGACCGAAAT
*
69662316 ACCTCTATAAGGTAAA
65 ACCCCTATAAGGTAAA
* * * *
69662332 ATGACCGAAATACCCCCA-AGGGGTAAAATGATCGAAACAGCCCCATAGGATAAAATGACCAAAA
1 ATGACCGAAATACCCCCATA-GGGTAAAATGA-CGAAATACCCCCATAGGGTAAAATGACCGAAA
*
69662396 TACCCCTATAGGGTAAA
64 TACCCCTATAAGGTAAA
*
69662413 ATGACCGAAATACCCCCATAAGGG-AAAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAA
1 ATGACCGAAATACCCCCAT-AGGGTAAAATGA-CGAAATACCCCCATAGGGTAAAATGACCGAAA
*
69662477 TACCCCGAT-AGGATAAA
64 TACCCCTATAAGG-TAAA
* * ** * * ** * * *
69662494 ATGACTGTAATACCCCTGTACGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATAACTGTAAT
1 ATGACCGAAATACCCCCATAGGGTAAAATGAC-GAAATACCCCCATAGGGTAAAATGACCGAAAT
* * *
69662559 ACCCCTGTAGGGAAAA
65 ACCCCTATAAGGTAAA
* * ** * *** * *
69662575 ATGA-CTATAATACCTCTGTAGGGTAAAATGACTATAATACCCTTGTAAGGTAAAATGA-CTATA
1 ATGACCGA-AATACCCCCATAGGGTAAAATGACGA-AATACCCCCATAGGGTAAAATGACCGA-A
* *
69662638 ATACCCCTGTAAAGTAAA
63 ATACCCCTATAAGGTAAA
69662656 ATGAC
1 ATGAC
69662661 TTATTTGCCC
Statistics
Matches: 268, Mismatches: 49, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
80 7 0.03
81 254 0.95
82 6 0.02
83 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (80 bp):
ATGACCGAAATACCCCCATAGGGTAAAATGACGAAATACCCCCATAGGGTAAAATGACCGAAATA
CCCCTATAAGGTAAA
Found at i:69662564 original size:27 final size:27
Alignment explanation
Indices: 69662272--69662661 Score: 304
Period size: 27 Copynumber: 14.4 Consensus size: 27
69662262 ACCCCCATAA
* * **
69662272 GGTAAAATGACAGAAATACCCCCATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * * * *
69662299 GGTAAAATGATTGAAATACCTCTATAA
1 GGTAAAATGACTGTAATACCCCTGTAG
* * **
69662326 GGTAAAATGACCGAAATACCCC-CAAGG
1 GGTAAAATGACTGTAATACCCCTGTA-G
* * *
69662353 GGTAAAATGA-TCGAAACAGCCCC-ATAG
1 GGTAAAATGACT-GTAATA-CCCCTGTAG
* *** *
69662380 GATAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * **
69662407 GGTAAAATGACCGAAATACCCCCATAAG
1 GGTAAAATGACTGTAATACCCCTGT-AG
*** **
69662435 GG-AAAATGACCAAAATACCCCCATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* *
69662461 GGTAAAATGACCGAAATACCCC-GATAG
1 GGTAAAATGACTGTAATACCCCTG-TAG
* *
69662488 GATAAAATGACTGTAATACCCCTGTAC
1 GGTAAAATGACTGTAATACCCCTGTAG
69662515 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
*
69662542 GGTAAAATAACTGTAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * *
69662569 GGAAAAATGACTATAATACCTCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * *
69662596 GGTAAAATGACTATAATACCCTTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAG
* *
69662623 GGTAAAATGACTATAATACCCCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAG
*
69662650 AGTAAAATGACT
1 GGTAAAATGACT
69662662 TATTTGCCCT
Statistics
Matches: 312, Mismatches: 42, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.03
27 293 0.94
28 10 0.03
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAG
Found at i:69664020 original size:43 final size:43
Alignment explanation
Indices: 69663972--69664058 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
69663962 TCAACGATGC
**
69663972 ATCACAAAATGCTACAAACTCTTTACCCAATTATGGCTGTACT
1 ATCACAAAACACTACAAACTCTTTACCCAATTATGGCTGTACT
*** *
69664015 ATCACAAAACACTACAAACTCTTTACTTGATTCTGGCTGTACT
1 ATCACAAAACACTACAAACTCTTTACCCAATTATGGCTGTACT
69664058 A
1 A
69664059 ACACTGGAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (43 bp):
ATCACAAAACACTACAAACTCTTTACCCAATTATGGCTGTACT
Found at i:69665248 original size:16 final size:16
Alignment explanation
Indices: 69665229--69665260 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
69665219 CATGCAATGT
69665229 TAGCCAATCCACACCC
1 TAGCCAATCCACACCC
69665245 TAGCCAATCCACACCC
1 TAGCCAATCCACACCC
69665261 AGAATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.50, G:0.06, T:0.12
Consensus pattern (16 bp):
TAGCCAATCCACACCC
Found at i:69668473 original size:43 final size:43
Alignment explanation
Indices: 69668408--69668573 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 43
69668398 AGCTCGCACA
* * * *
69668408 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA-TG
* * * * * *
69668450 ATGCCACTGTCCCAAACAAGGTCTTACATGAAATCATAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATG
* *
69668493 ATGCCAATGTCCCAGACATGATCTTACACGTAATCACAATATA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATG
69668536 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
69668574 TCTCGATAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
42 5 0.05
43 97 0.92
44 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATG
Found at i:69669862 original size:42 final size:42
Alignment explanation
Indices: 69669775--69669923 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 42
69669765 CCGAGATGAA
* * * *
69669775 ATTACATGTAAGACCATGTCTAGAACATTGACATTGTATTGTG
1 ATTACATGTAAGACCATATCTAGGACATTGACATCGTA-TATG
69669818 ATTACATGTAAGACCATATCT-GGACATTGACATCGTTATATG
1 ATTACATGTAAGACCATATCTAGGACATTGACATCG-TATATG
* * * * * *
69669860 ATTTCGTATAAGACCATGTCTAGGGCATTGGCATCG-ATATGAG
1 ATTACATGTAAGACCATATCTAGGACATTGACATCGTATAT--G
*
69669903 ATAACATGTAAGACCATATCT
1 ATTACATGTAAGACCATATCT
69669924 GGGATATGGC
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 4 0.05
42 32 0.37
43 51 0.59
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (42 bp):
ATTACATGTAAGACCATATCTAGGACATTGACATCGTATATG
Found at i:69683017 original size:7 final size:6
Alignment explanation
Indices: 69682989--69683039 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
69682979 TTTTATTGCA
* * *
69682989 TTTTAT TTTTGT TTTTAA TTTAAT TTTTAT TTTATAAT TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-T-AT TTTTAT TTTTAT
69683038 TT
1 TT
69683040 GCTTCTGGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
5 5 0.14
6 24 0.67
7 2 0.06
8 5 0.14
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:69683028 original size:14 final size:14
Alignment explanation
Indices: 69683009--69683037 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
69682999 GTTTTTAATT
69683009 TAATTTTTATTTTA
1 TAATTTTTATTTTA
69683023 TAATTTTTATTTTA
1 TAATTTTTATTTTA
69683037 T
1 T
69683038 TTGCTTCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TAATTTTTATTTTA
Found at i:69683884 original size:27 final size:27
Alignment explanation
Indices: 69683854--69683916 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
69683844 TAAAGCTGCT
*
69683854 AGTATCTGTATATGTGGCAAAGCCACC
1 AGTATCAGTATATGTGGCAAAGCCACC
*
69683881 AGTAACAGTATATGTGGCAAAGCCACC
1 AGTATCAGTATATGTGGCAAAGCCACC
69683908 AGTAT-AGTA
1 AGTATCAGTA
69683917 CACTTCCTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.12
27 29 0.88
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AGTATCAGTATATGTGGCAAAGCCACC
Found at i:69688951 original size:46 final size:46
Alignment explanation
Indices: 69688806--69688951 Score: 115
Period size: 46 Copynumber: 3.2 Consensus size: 46
69688796 AACCCGCCCA
*
69688806 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCC
* * * * * * *
69688854 TCA-CGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCATCATCC
69688898 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCC
69688946 T-AGTGA
1 TAAGTGA
69688952 CATGTCACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 4 0.05
46 32 0.42
47 27 0.35
48 10 0.13
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC
Found at i:69711336 original size:43 final size:43
Alignment explanation
Indices: 69711237--69711337 Score: 109
Period size: 43 Copynumber: 2.3 Consensus size: 43
69711227 CTCGCATAAT
69711237 CACACATATCATACAATGCCAATGTCCCAGACGTGGTCTTACATG
1 CACACATAT-AT-CAATGCCAATGTCCCAGACGTGGTCTTACATG
* * *
69711282 TA-ATCACATATCAATGCCACTGTCCCAGACAG-GGTCTTA-ATCG
1 CACA-CATATATCAATGCCAATGTCCCAGAC-GTGGTCTTACAT-G
69711325 CACACATATATCA
1 CACACATATATCA
69711338 GAATCACATA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.04
43 35 0.74
44 5 0.11
45 5 0.11
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.25
Consensus pattern (43 bp):
CACACATATATCAATGCCAATGTCCCAGACGTGGTCTTACATG
Found at i:69713494 original size:38 final size:35
Alignment explanation
Indices: 69713410--69713483 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
69713400 TTCTTTTACT
* * *
69713410 TGTTTCTTTTATTATTCTTAATTTATCTTCTTGAC
1 TGTTTATTTTATTATTCTTAATGTATCTTCTGGAC
*
69713445 TGTTTATTTTATTATTCTTAATGTA-GTTCTGGAC
1 TGTTTATTTTATTATTCTTAATGTATCTTCTGGAC
69713479 ATGTT
1 -TGTT
69713484 GATTATTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 7 0.21
35 27 0.79
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59
Consensus pattern (35 bp):
TGTTTATTTTATTATTCTTAATGTATCTTCTGGAC
Found at i:69730767 original size:27 final size:27
Alignment explanation
Indices: 69730729--69730783 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
69730719 TTTAAATGTG
69730729 TTAGTGGGCCTTTAGAAGGCCCAGGCC
1 TTAGTGGGCCTTTAGAAGGCCCAGGCC
69730756 TTAGTGGGCCTTTAGAAGGCCCAGGCC
1 TTAGTGGGCCTTTAGAAGGCCCAGGCC
69730783 T
1 T
69730784 AAGTTAAACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.24
Consensus pattern (27 bp):
TTAGTGGGCCTTTAGAAGGCCCAGGCC
Found at i:69749547 original size:16 final size:16
Alignment explanation
Indices: 69749526--69749576 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
69749516 GTAAATCCCA
69749526 AAATGCTGAAAAGTCG
1 AAATGCTGAAAAGTCG
* *
69749542 AAATGCCGAAAAGCCG
1 AAATGCTGAAAAGTCG
*
69749558 AAATG-TCGAAAAGTTG
1 AAATGCT-GAAAAGTCG
69749574 AAA
1 AAA
69749577 GTTTAGCTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.47, C:0.14, G:0.24, T:0.16
Consensus pattern (16 bp):
AAATGCTGAAAAGTCG
Found at i:69749834 original size:29 final size:29
Alignment explanation
Indices: 69749792--69749911 Score: 152
Period size: 29 Copynumber: 4.2 Consensus size: 29
69749782 CATGTATACA
*
69749792 AATGTGATTTGGGCCTAATGGGCCGTATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* *
69749821 AATGTTATTTGGGCCTAATGGGCCATACG
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
69749850 AATATGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * * *
69749879 AATGAGA-TTAGGCCTAGTGGGCTATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
69749907 CATGT
1 AATGT
69749912 ATGTAGACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 21 0.27
29 57 0.73
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:69754066 original size:16 final size:16
Alignment explanation
Indices: 69754045--69754079 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
69754035 GCAAATCCCA
* *
69754045 AAATGCTGAAAAGCTG
1 AAATGCCGAAAAGCCG
69754061 AAATGCCGAAAAGCCG
1 AAATGCCGAAAAGCCG
69754077 AAA
1 AAA
69754080 GTTTAGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:69754330 original size:29 final size:29
Alignment explanation
Indices: 69754288--69754411 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
69754278 GAAAGCATGT
*
69754288 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
69754317 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
69754346 CTACGAATATGATTTGGGCCT-GTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
69754374 ATATGAATGAGA-TTGGGCATAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
69754402 ATATGCATGT
1 ATATGAATGT
69754412 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 7 0.09
28 28 0.35
29 46 0.57
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:69757918 original size:39 final size:40
Alignment explanation
Indices: 69757801--69758023 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
69757791 GCTCCTCGTT
* *
69757801 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
69757841 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
69757881 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
69757920 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
69757959 CAAATGCCTTC-GGATCTTAGTCC-GAATATTGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TCGCA
69758000 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69758024 CATCATTCAA
Statistics
Matches: 164, Mismatches: 10, Indels: 18
0.85 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 90 0.55
40 64 0.39
41 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:69757978 original size:79 final size:79
Alignment explanation
Indices: 69757801--69758023 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 79
69757791 GCTCCTCGTT
* *
69757801 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
69757866 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* *
69757881 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCG
*
69757943 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
* * * * * *
69757959 CAAATGCCTTCGGATCTTAGTCCGAATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCG
69758022 GA
64 GA
69758024 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 47 0.38
79 59 0.48
80 17 0.14
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:69761904 original size:47 final size:47
Alignment explanation
Indices: 69761821--69762084 Score: 422
Period size: 47 Copynumber: 5.6 Consensus size: 47
69761811 TATTTGAATA
69761821 AATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATG
*
69761870 AATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69761917 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69761964 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
69762011 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG-CGAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG-ATGTGATG
* *
69762058 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69762085 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 184 0.91
49 17 0.08
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69763558 original size:43 final size:43
Alignment explanation
Indices: 69763510--69763612 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
69763500 TTGGTTTTCA
69763510 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
69763553 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
69763596 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
69763613 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:69763629 original size:29 final size:29
Alignment explanation
Indices: 69763594--69763667 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
69763584 GTTGTGAGAT
* *
69763594 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
69763623 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
*
69763652 TGACACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69763668 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:69764116 original size:80 final size:80
Alignment explanation
Indices: 69763980--69764202 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 80
69763970 TCGAATGATG
* * * * *
69763980 TCCGGGCTAAGTCTCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGTTCCGAAGAGCA
* *
69764042 TTGGTGCGAGTTACTAAA
64 TTCGTGCGAGTGA-TAAA
*
69764060 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
* *
69764125 CGTGCTAGTGATATA
66 CGTGCGAGTGATAAA
* ** * * * * *
69764140 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCA
69764203 ATCATGCTGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
80 95 0.79
81 20 0.17
82 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCGAGTGATAAA
Found at i:69764211 original size:40 final size:40
Alignment explanation
Indices: 69763980--69764215 Score: 210
Period size: 40 Copynumber: 5.9 Consensus size: 40
69763970 TCGAATGATG
* ** *
69763980 TCCGGGCTAAGTCTCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
69764020 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
69764060 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
69764100 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
69764140 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
69764180 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
69764216 CGTGTATTCG
Statistics
Matches: 163, Mismatches: 29, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 143 0.88
41 19 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:69767397 original size:47 final size:47
Alignment explanation
Indices: 69767319--69767535 Score: 335
Period size: 47 Copynumber: 4.6 Consensus size: 47
69767309 TATTTGAATA
69767319 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69767368 AATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69767415 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
69767462 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69767509 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69767536 TCCCGAAGGG
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 144 0.92
49 12 0.08
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69769008 original size:43 final size:43
Alignment explanation
Indices: 69768960--69769062 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
69768950 TTGGTTTTCA
69768960 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
69769003 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
69769046 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
69769063 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:69769079 original size:29 final size:29
Alignment explanation
Indices: 69769044--69769117 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
69769034 GTTGTGAGAT
* *
69769044 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
69769073 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
69769102 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69769118 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:69769553 original size:40 final size:40
Alignment explanation
Indices: 69769430--69769665 Score: 210
Period size: 40 Copynumber: 5.9 Consensus size: 40
69769420 TCGAATGATG
** *
69769430 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
69769470 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
69769510 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
69769550 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
69769590 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
69769630 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
69769666 CGTGTATTCG
Statistics
Matches: 162, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 142 0.88
41 19 0.12
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:69769566 original size:80 final size:80
Alignment explanation
Indices: 69769430--69769652 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 80
69769420 TCGAATGATG
* * * *
69769430 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGTTCCGAAGAGCA
* *
69769492 TTGGTGCGAGTTACTAAA
64 TTCGTGCGAGTGA-TAAA
* *
69769510 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
* *
69769575 CGTGCTAGTGATATA
66 CGTGCGAGTGATAAA
* ** * * * * *
69769590 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCA
69769653 ATCATGCTGG
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 94 0.78
81 20 0.17
82 6 0.05
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCGAGTGATAAA
Found at i:69772594 original size:49 final size:47
Alignment explanation
Indices: 69772480--69772649 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
69772470 TATTTGAATA
69772480 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69772529 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
69772576 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69772623 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69772650 TCCTGAAGGG
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 99 0.89
49 12 0.11
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69795692 original size:39 final size:39
Alignment explanation
Indices: 69795649--69795776 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
69795639 GGTCTTTAAC
** *
69795649 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
69795688 CCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
69795727 TCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
69795766 CTGGATATTTT
1 CCGGATATTTT
69795777 CAATCTCATA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:69815858 original size:44 final size:45
Alignment explanation
Indices: 69815795--69815924 Score: 154
Period size: 45 Copynumber: 2.9 Consensus size: 45
69815785 GGTGAATCCA
* * * * *
69815795 CAAATCTCATCTCCCTGAAGTAGCAGTGGAGCAAATTGAAG-TTG
1 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATGG
* * * * *
69815839 TAGATCTTATCTCCTTGAAGTTGTAGTGGAGTAGACTGAAGATGG
1 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATGG
*
69815884 CAAATCTTATTTCCTTGAAGTTGCAGTGGAGCAGATTGAAG
1 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAG
69815925 CTAAAAGTTG
Statistics
Matches: 69, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
44 32 0.46
45 37 0.54
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (45 bp):
CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATGG
Found at i:69818082 original size:16 final size:16
Alignment explanation
Indices: 69818054--69818089 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
69818044 TGTCTTTTTA
69818054 TTATTTTTTACGCAT-
1 TTATTTTTTACGCATG
69818069 TTATTTTATTACGCATG
1 TTATTTT-TTACGCATG
69818086 TTAT
1 TTAT
69818090 CATTGTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 8 0.42
17 4 0.21
ACGTcount: A:0.22, C:0.11, G:0.08, T:0.58
Consensus pattern (16 bp):
TTATTTTTTACGCATG
Found at i:69821639 original size:11 final size:9
Alignment explanation
Indices: 69821593--69821650 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
69821583 TTCATTCTAG
*
69821593 AATTATAAA
1 AATTATTAA
*
69821602 AATTATAAAA
1 AATTAT-TAA
*
69821612 AATCATTAA
1 AATTATTAA
69821621 AATTATTATA
1 AATTATTA-A
69821631 AATTAATTAA
1 AATT-ATTAA
*
69821641 AATCATTAA
1 AATTATTAA
69821650 A
1 A
69821651 CTAATAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
9 21 0.50
10 17 0.40
11 4 0.10
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
AATTATTAA
Found at i:69821879 original size:49 final size:50
Alignment explanation
Indices: 69821816--69821918 Score: 129
Period size: 49 Copynumber: 2.1 Consensus size: 50
69821806 AAAAATATGT
* * *
69821816 TTTTTTCTAATTTTTATTATTTTAATTAATT-TATAATAAATTTATAAATA
1 TTTTTTATAATTTTTATGATTTTAATGAATTATATAATAAATTTATAAA-A
* **
69821866 TTTTTTAT-ATTTTTATGATTTTAATGAATTATTTTGTAAATTTATAAAA
1 TTTTTTATAATTTTTATGATTTTAATGAATTATATAATAAATTTATAAAA
69821915 TTTT
1 TTTT
69821919 ATGTTTTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
49 25 0.54
50 21 0.46
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (50 bp):
TTTTTTATAATTTTTATGATTTTAATGAATTATATAATAAATTTATAAAA
Found at i:69821920 original size:39 final size:37
Alignment explanation
Indices: 69821867--69821953 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 37
69821857 TTATAAATAT
* * *
69821867 TTTTTATATTTTTATGATTTTAATGAATTATTTTGTAAA
1 TTTTAATAATTTTATGATTTTAATGAA--ATTTTATAAA
* *
69821906 TTTATAA-AATTTTATGTTTTTAATTAAATTTTATAAA
1 TTT-TAATAATTTTATGATTTTAATGAAATTTTATAAA
69821943 TTTTAATAATT
1 TTTTAATAATT
69821954 CAAATAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
36 3 0.07
37 16 0.39
39 20 0.49
40 2 0.05
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (37 bp):
TTTTAATAATTTTATGATTTTAATGAAATTTTATAAA
Found at i:69822169 original size:82 final size:82
Alignment explanation
Indices: 69822017--69822169 Score: 200
Period size: 82 Copynumber: 1.9 Consensus size: 82
69822007 AAATAAATGG
* *
69822017 TATCCAAATTCAAATGAACTTCAACAATCATTTCTTCAAGTTCATTGATATACTTATTTTTAAAA
1 TATCCAAATTCAAATGAACTTCAACAACCATTTCGTCAAGTTCATTGATATACTTATTTTTAAAA
*
69822082 TAATTTAAAATAATTTT
66 GAATTTAAAATAATTTT
* * * * * * *
69822099 TATCTAAATTCAAATGAATTTGAACAACCGTTT-GTCAAGGTTCATTGGTGTACTTATTTTTAAG
1 TATCCAAATTCAAATGAACTTCAACAACCATTTCGTCAA-GTTCATTGATATACTTATTTTTAAA
69822163 AGAATTT
65 AGAATTT
69822170 TTAATTTTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 4 0.07
82 56 0.93
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (82 bp):
TATCCAAATTCAAATGAACTTCAACAACCATTTCGTCAAGTTCATTGATATACTTATTTTTAAAA
GAATTTAAAATAATTTT
Found at i:69825589 original size:22 final size:22
Alignment explanation
Indices: 69825531--69825592 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
69825521 GTTCAAATAT
*
69825531 TTATTTTCATTTTT-TGTTTTAA
1 TTATTTTTATTTTTAT-TTTTAA
*
69825553 TTATTTTT-TATTTTATTTTTAG
1 TTATTTTTAT-TTTTATTTTTAA
69825575 TTATTTTTATTTTTATTT
1 TTATTTTTATTTTTATTT
69825593 AAAAAAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 1 0.03
22 32 0.91
23 2 0.06
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (22 bp):
TTATTTTTATTTTTATTTTTAA
Found at i:69826503 original size:21 final size:21
Alignment explanation
Indices: 69826465--69826512 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
69826455 ATTCAAAGAA
*
69826465 CCATGTCCCTAGCTCACATGG
1 CCATGTCCCTAGCTCACACGG
* *
69826486 GCATGTGCCTTAGC-CACACGG
1 CCATGT-CCCTAGCTCACACGG
69826507 CCATGT
1 CCATGT
69826513 ACATCCTCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.19, C:0.35, G:0.23, T:0.23
Consensus pattern (21 bp):
CCATGTCCCTAGCTCACACGG
Found at i:69831497 original size:27 final size:27
Alignment explanation
Indices: 69831467--69831640 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
69831457 TTATTGAGTC
* *
69831467 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
69831494 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
69831521 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
69831549 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69831576 CG--CAC--AGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
69831599 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
69831626 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69831641 GTACAATTTA
Statistics
Matches: 119, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
23 15 0.13
25 6 0.05
27 74 0.62
28 24 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69839502 original size:27 final size:27
Alignment explanation
Indices: 69839470--69839647 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
69839460 TTATTGAGCC
* *
69839470 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
69839497 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
69839524 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
69839552 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
69839579 CGCACACTTAGTGC-ATCAT-ATCCATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* *
69839606 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
69839633 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69839648 GTACAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 26 0.21
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69839636 original size:54 final size:53
Alignment explanation
Indices: 69839495--69839646 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 53
69839485 ATATAATCAA
* * *
69839495 CTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTG-CACATAGTCCAT
** *
69839550 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TCCAT
1 CTCGCACACTTAGTGCAACATAGTCAA-TCGCACACTTAGTGCA-CATAGTCCAT
*
69839604 TTCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTGC
69839647 TGTACAATTT
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
54 45 0.53
55 40 0.47
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (53 bp):
CTCGCACACTTAGTGCAACATAGTCAATCGCACACTTAGTGCACATAGTCCAT
Found at i:69856926 original size:51 final size:51
Alignment explanation
Indices: 69856866--69856964 Score: 171
Period size: 51 Copynumber: 1.9 Consensus size: 51
69856856 ATTTAAGTTT
69856866 TTTTAAATGGTTAATTGAGTTAAAAATATTATTTAGATCAAGAAACAATTG
1 TTTTAAATGGTTAATTGAGTTAAAAATATTATTTAGATCAAGAAACAATTG
* * *
69856917 TTTTAAATGGTTAATTGGGTTAAAACTATTATTTATATCAAGAAACAA
1 TTTTAAATGGTTAATTGAGTTAAAAATATTATTTAGATCAAGAAACAA
69856965 ATCAACCTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.39
Consensus pattern (51 bp):
TTTTAAATGGTTAATTGAGTTAAAAATATTATTTAGATCAAGAAACAATTG
Found at i:69864434 original size:68 final size:68
Alignment explanation
Indices: 69864291--69864434 Score: 163
Period size: 68 Copynumber: 2.1 Consensus size: 68
69864281 TTATTTTAAC
* * *
69864291 AGTTTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTG
1 AGTTTAATATTAAATTTAATTTAATACATATCTTAATAGTATTTAATAAATTTAATATTAAAGTG
69864356 ATT
66 ATT
* *
69864359 A-TCTTAATATTAAATTTAATTTAATGTACAT-TC-TACTA-T-TTTAATAAGATTTAATATTAT
1 AGT-TTAATATTAAATTTAATTTAA--TACATATCTTAATAGTATTTAATAA-ATTTAATATTAA
69864419 AGTGATT
62 AGTGATT
69864426 AAGTTTAAT
1 -AGTTTAAT
69864435 CATAGTTGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
66 6 0.09
67 20 0.31
68 32 0.49
69 3 0.05
70 4 0.06
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (68 bp):
AGTTTAATATTAAATTTAATTTAATACATATCTTAATAGTATTTAATAAATTTAATATTAAAGTG
ATT
Found at i:69866616 original size:35 final size:35
Alignment explanation
Indices: 69866570--69866639 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
69866560 GCCCTCTTGA
69866570 AGCTTAACTTAAAGCGAAGAAATCGTTGGAGAGAT
1 AGCTTAACTTAAAGCGAAGAAATCGTTGGAGAGAT
69866605 AGCTTAACTTAAAGCGAAGAAATCGTTGGAGAGAT
1 AGCTTAACTTAAAGCGAAGAAATCGTTGGAGAGAT
69866640 TCTGACTCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.26, T:0.23
Consensus pattern (35 bp):
AGCTTAACTTAAAGCGAAGAAATCGTTGGAGAGAT
Found at i:69869381 original size:79 final size:82
Alignment explanation
Indices: 69869270--69869454 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
69869260 GCTACTCGTT
* * *
69869270 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
69869333 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
69869350 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
69869413 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
69869430 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69869455 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:69869454 original size:40 final size:40
Alignment explanation
Indices: 69869251--69869454 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
69869241 CGGAATTTAA
** *
69869251 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69869291 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69869331 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69869370 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69869410 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69869450 CCGGA
1 CCGGA
69869455 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69875347 original size:40 final size:40
Alignment explanation
Indices: 69875299--69875486 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
69875289 GCTACTTGCT
69875299 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69875339 CAAGTGCCTTCGGGACTTAGCCCGGTTATACTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69875379 CAAATGCTTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
69875419 CAAATGCCTTCGGG-CTTAACCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
69875458 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
69875487 CATCTGAATA
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.25
40 97 0.73
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:69876102 original size:40 final size:40
Alignment explanation
Indices: 69876031--69876241 Score: 270
Period size: 40 Copynumber: 5.3 Consensus size: 40
69876021 CCTTCGAAAT
* *
69876031 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTTGCACAAATGCCTTCGGGAC
*
69876070 TTAGCCCGGTTATAGTAACTTGCACAAGTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
* * *
69876110 TTAGCCCGATTAAAGTAACATGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
*
69876150 TTAGCCC-GTATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGT-TATAGTAACTTGCACAAATGCCTTCGGGAC
* * *
69876189 TTAGCCCGG-AATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTA-TAGTAACTTGCACAAATGCCTTCGGGAC
69876229 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
69876242 CATCCGAATA
Statistics
Matches: 150, Mismatches: 15, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 38 0.25
40 110 0.73
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
Found at i:69876545 original size:755 final size:755
Alignment explanation
Indices: 69875095--69877393 Score: 3985
Period size: 755 Copynumber: 3.0 Consensus size: 755
69875085 ATATTCACAC
69875095 ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGCGAATAATATTTAAAAG
1 ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGCGAATAATATTTAAAAG
*
69875160 GAATAAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
66 GAATCAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
*
69875225 TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCAAAATTTAGCCGGATATAG
131 TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGAAATTTAGCCGGATATAG
69875290 CTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAGTGCCTTCGGGAC
196 CTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAGTGCCTTCGGGAC
* * *
69875355 TTAGCCCGGTTATACTAACTCGCACAAATGCTTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
261 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGTATATAGTAACTCGCAC
*
69875420 AAATGCCTTCGGGCTTAACCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTT
326 AAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTT
*
69875485 ATCATCTGAATATCCATGCACATATCAATAAATCATGACACATCTATATTTCATTTTCATAACTA
391 ATCATCCGAATATCCATGCACATATCAATAAATCATGACACATCTATATTTCATTTTCATAACTA
*
69875550 GAATTCAAACACAAGTCACTTATCAAGCATTATCATTTTCAGCTCAATAGTTACATACAAAGAGC
456 GAATTCAAACACAAGTCACTTATCAAGCATTATCATTTTCGGCTCAATAGTTACATACAAAGAGC
69875615 ATGATTTTGATTTACTTAAAACATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAAC
521 ATGATTTTGATTTACTTAAAACATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAAC
69875680 TTACCTCGGATGTTGTCGAACGATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCAA
586 TTACCTCGGATGTTGTCGAACGATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCAA
69875745 CTTTGGTCCTCTAAGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCTA
651 CTTTGGTCCTCTAAGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCTA
69875810 GCTTATGGCCGAATATGACAAGGAGTTTGATAGGAGTTTG
716 GCTTATGGCCGAATATGACAAGGAGTTTGATAGGAGTTTG
*
69875850 ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGAGAATAATATTTAAAAG
1 ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGCGAATAATATTTAAAAG
69875915 GAATCAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
66 GAATCAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
69875980 TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGAAATTTAGCCGGATATAG
131 TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGAAATTTAGCCGGATATAG
*
69876045 CTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAGTGCCTTCGGGAC
196 CTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAGTGCCTTCGGGAC
* *
69876110 TTAGCCCGATTAAAGTAACAT-GCACAAATGCCTTCGGGACTTAGCCCGTATATAGTAACTCGCA
261 TTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGTATATAGTAACTCGCA
69876174 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
325 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
69876239 TATCATCCGAATATCCATGCACATATCAATAAATCATGACACATCTATATTTCATTTTCATAACT
390 TATCATCCGAATATCCATGCACATATCAATAAATCATGACACATCTATATTTCATTTTCATAACT
69876304 AGAATTCAAACACAAGTCACTTATCAAGCATTATCATTTTCGGCTCAATAGTTACATACAAAGAG
455 AGAATTCAAACACAAGTCACTTATCAAGCATTATCATTTTCGGCTCAATAGTTACATACAAAGAG
69876369 CATGATTTTGATTTACTTAAAACATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAA
520 CATGATTTTGATTTACTTAAAACATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAA
69876434 CTTACCTCGGATGTTGTCGAACGATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCA
585 CTTACCTCGGATGTTGTCGAACGATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCA
69876499 ACTTTGGTCCTCTAAGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCT
650 ACTTTGGTCCTCTAAGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCT
69876564 AGCTTATGGCCGAATATGACAAGGAGTTTGATAGGAGTTTG
715 AGCTTATGGCCGAATATGACAAGGAGTTTGATAGGAGTTTG
69876605 ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGCGAATAATATTTAAAAG
1 ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGCGAATAATATTTAAAAG
69876670 GAATCAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
66 GAATCAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
*
69876735 TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGGAATTTAGCCGGATATAG
131 TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGAAATTTAGCCGGATATAG
*
69876800 CTACTTGCTCAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAGTGCCTTCGGGAC
196 CTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAGTGCCTTCGGGAC
*
69876865 TTAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT-TATAGTAACTCGCA
261 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GTATATAGTAACTCGCA
* * * *
69876929 CAAATGCCTTCGGGACTTAGCCCAG-ATATAGTAACTCGCACAAATGCCTTTGGG-CTTAGCCCA
325 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC-
69876992 GAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATCCAAATATCCATGCACA
387 G-----GT---T-------A-----TC---A--T---CC-G----------AATATCCATGCACA
69877057 TATCAATAAATCATGACACATCTATATTTCATTTTCATAACTAGAATTCAAACACAAGTCACTTA
413 TATCAATAAATCATGACACATCTATATTTCATTTTCATAACTAGAATTCAAACACAAGTCACTTA
69877122 TCAAGCATTATCATTTTCGGCTCAATAGTTACATACAAAGAGCATGATTTTGATTTACTTAAAAC
478 TCAAGCATTATCATTTTCGGCTCAATAGTTACATACAAAGAGCATGATTTTGATTTACTTAAAAC
*
69877187 ATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAACTTACCTCGGATGTTGTCGAACA
543 ATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAACTTACCTCGGATGTTGTCGAACG
69877252 ATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCAACTTTGGTCCTCTAAGCTCTTGA
608 ATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCAACTTTGGTCCTCTAAGCTCTTGA
*
69877317 GCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCTAGCTTATCGCCGAATATGACAAG
673 GCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCTAGCTTATGGCCGAATATGACAAG
69877382 GAGTTTGATAGG
738 GAGTTTGATAGG
69877394 TCATATGGCC
Statistics
Matches: 1474, Mismatches: 25, Indels: 50
0.95 0.02 0.03
Matches are distributed among these distances:
754 1 0.00
755 1077 0.73
756 36 0.02
761 2 0.00
764 1 0.00
771 1 0.00
776 2 0.00
779 1 0.00
781 1 0.00
784 2 0.00
785 1 0.00
795 349 0.24
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (755 bp):
ATAAGGGATCAACTTAACCAAAGGCCGGAAGCTCATTAATTGTCTGAGCGAATAATATTTAAAAG
GAATCAACTACTCCAATGCATATACGAAACGTACCTCATCGTTGGGATTTTACGAGCGTATTAAT
TGAAATTATTACAGCAAGATCGCTCATTCCCAAACCAAGTACCTTCGAAATTTAGCCGGATATAG
CTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAGTGCCTTCGGGAC
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGTATATAGTAACTCGCAC
AAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTT
ATCATCCGAATATCCATGCACATATCAATAAATCATGACACATCTATATTTCATTTTCATAACTA
GAATTCAAACACAAGTCACTTATCAAGCATTATCATTTTCGGCTCAATAGTTACATACAAAGAGC
ATGATTTTGATTTACTTAAAACATGATCTAATCGAATCATAATCTAAGATCCATTACTCAAAAAC
TTACCTCGGATGTTGTCGAACGATTTCGGCGGCTATTCGATCACTTTTTCCTTTCCCTTATCCAA
CTTTGGTCCTCTAAGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCTCATTATGCTA
GCTTATGGCCGAATATGACAAGGAGTTTGATAGGAGTTTG
Found at i:69876857 original size:40 final size:40
Alignment explanation
Indices: 69876809--69877036 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
69876799 GCTACTTGCT
*
69876809 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69876849 CAAGTGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
69876889 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
69876929 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
69876969 CAAATGCCTTTGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
69877008 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
69877037 CATCCAAATA
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.19
40 136 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:69876905 original size:80 final size:80
Alignment explanation
Indices: 69876776--69877032 Score: 342
Period size: 80 Copynumber: 3.2 Consensus size: 80
69876766 AAACCAAGTA
* * * * *
69876776 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
69876839 GTAACTCGCACAAGTG
65 GTAACTCGCACAAATG
* *
69876855 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
69876920 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * * *
69876935 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTTGGG-CTTAGCCCAG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
69876998 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
69877014 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69877033 TTATCATCCA
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
78 1 0.01
79 56 0.35
80 101 0.64
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:69880332 original size:46 final size:46
Alignment explanation
Indices: 69880282--69880410 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
69880272 TGATTGAGCA
*
69880282 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
69880328 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
69880374 -CCTGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69880411 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:69882638 original size:28 final size:28
Alignment explanation
Indices: 69882606--69882663 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
69882596 GCTGAAGTAA
69882606 ACCCGTAGGCACTTGATGTTCCACCTTC
1 ACCCGTAGGCACTTGATGTTCCACCTTC
69882634 ACCCGTAGGCACTTGATGTTCCACCTTC
1 ACCCGTAGGCACTTGATGTTCCACCTTC
69882662 AC
1 AC
69882664 TTGCTGACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (28 bp):
ACCCGTAGGCACTTGATGTTCCACCTTC
Found at i:69887826 original size:47 final size:47
Alignment explanation
Indices: 69887757--69887881 Score: 164
Period size: 47 Copynumber: 2.7 Consensus size: 47
69887747 GTTAAATGTT
* *
69887757 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATTGATATAT-G
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAA-TCA-ACATGG
* *
69887804 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAACATGG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAACATGG
* *
69887851 TAATCATGGTATATCCACTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
69887882 TTTCCATTCC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 3 0.04
47 62 0.90
48 4 0.06
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAACATGG
Found at i:69898718 original size:50 final size:50
Alignment explanation
Indices: 69898643--69898991 Score: 349
Period size: 50 Copynumber: 6.9 Consensus size: 50
69898633 ATCGAAGCAC
** * * *
69898643 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
69898693 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
** * * * * *
69898743 TCTAATACACGTAGTAGCCTGCACTTAGTACTACAAATGTGATCGAA-ATTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA--A
* * * * * *
69898794 ACGGGAACGCATAGTAGCCTCCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * ** *
69898844 TCTGATACACATAGTAGCCTGCACTTAGTCCTACATAAGTGATCAAAACTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * ***
69898895 TCGGGCACACATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
*
69898945 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
69898992 AACTGTCTCA
Statistics
Matches: 237, Mismatches: 58, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
50 162 0.68
51 75 0.32
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:69898829 original size:101 final size:101
Alignment explanation
Indices: 69898699--69898979 Score: 393
Period size: 101 Copynumber: 2.8 Consensus size: 101
69898689 TCAATCTGGT
* * * *
69898699 ACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTATCCATCTAATACACGTAGTAGCCTG
1 ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTG
* *
69898764 CACTTAGTACTACA-AATGTGATCGAAATTAACGGGA
66 CACTTAGTACTACATAA-GTGATCAAAACTAACGGGA
* * *
69898800 ACGCATAGTAGCCTCCACTTAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTG
1 ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTG
* * *
69898865 CACTTAGTCCTACATAAGTGATCAAAACTATCGGGC
66 CACTTAGTACTACATAAGTGATCAAAACTAACGGGA
*** * *
69898901 ACACATAGTAGCCTGCACTTAGTACTACACATACGACCTAACAATCTGGTACACGTAGTAGCCTG
1 ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTG
69898966 CACTTAGTACTACA
66 CACTTAGTACTACA
69898980 CACGTGACCT
Statistics
Matches: 158, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
101 156 0.99
102 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTG
CACTTAGTACTACATAAGTGATCAAAACTAACGGGA
Found at i:69898960 original size:151 final size:150
Alignment explanation
Indices: 69898652--69898991 Score: 385
Period size: 151 Copynumber: 2.3 Consensus size: 150
69898642 CTCTGGTATG
* * * * *
69898652 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
* ** * * * * *
69898717 TTAGTACTACACACGTGACTTATCCATCTAATACACGTAGTAGCCTGCACTTAGTACTACAAATG
66 TTAGTACTACACAAGTGACAAAACCATCGAACACACATAGTAGCCTGCACTTAGTACTACAAATA
* * *
69898782 TGATCGAAATTAACGGGAACG
131 CGACCGAAA-TAACGGGAACA
* *
69898803 CATAGTAGCCTCCACTTAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
* * * ** *
69898868 TTAGTCCTACATAAGTGATCAAAACTATCGGGCACACATAGTAGCCTGCACTTAGTACTACACAT
66 TTAGTACTACACAAGTGA-CAAAACCATCGAACACACATAGTAGCCTGCACTTAGTACTACAAAT
* * * *
69898933 ACGACCTAACA-ATCTGGTACA
130 ACGACCGAA-ATAACGGGAACA
*
69898954 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
69898992 AACTGTCTCA
Statistics
Matches: 157, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
151 115 0.73
152 41 0.26
153 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (150 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
TTAGTACTACACAAGTGACAAAACCATCGAACACACATAGTAGCCTGCACTTAGTACTACAAATA
CGACCGAAATAACGGGAACA
Found at i:69906211 original size:17 final size:16
Alignment explanation
Indices: 69906189--69906226 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
69906179 CAAGTAAGTT
*
69906189 AAAAAAAA-TGTTGCGA
1 AAAAAAAAGAGTT-CGA
69906205 AAAAAAAAGAGTTCGA
1 AAAAAAAAGAGTTCGA
69906221 AAAAAA
1 AAAAAA
69906227 TTCAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.66, C:0.05, G:0.16, T:0.13
Consensus pattern (16 bp):
AAAAAAAAGAGTTCGA
Found at i:69906235 original size:12 final size:11
Alignment explanation
Indices: 69906206--69906266 Score: 86
Period size: 11 Copynumber: 5.3 Consensus size: 11
69906196 ATGTTGCGAA
69906206 AAAAAAAGAGTTC
1 AAAAAAA-A-TTC
*
69906219 GAAAAAAATTC
1 AAAAAAAATTC
69906230 AAAAAAAATTC
1 AAAAAAAATTC
69906241 AAAAAAAATTC
1 AAAAAAAATTC
69906252 AAAAAAAAGTTC
1 AAAAAAAA-TTC
69906264 AAA
1 AAA
69906267 TTTTTTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
11 32 0.71
12 7 0.16
13 6 0.13
ACGTcount: A:0.69, C:0.08, G:0.07, T:0.16
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:69906990 original size:15 final size:15
Alignment explanation
Indices: 69906966--69907006 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
69906956 TGCAAGTGTT
*
69906966 CGTCAGAGAGATCAC
1 CGTCAAAGAGATCAC
69906981 CGTCAAAGAGATCAC
1 CGTCAAAGAGATCAC
69906996 CGTCAAAGAGA
1 CGTCAAAGAGA
69907007 CCGGAGACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.12
Consensus pattern (15 bp):
CGTCAAAGAGATCAC
Found at i:69910306 original size:18 final size:19
Alignment explanation
Indices: 69910269--69910306 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
69910259 GATTTGATAC
69910269 GATATGCACATGTTATGTAT
1 GATATGCACATG-TATGTAT
69910289 GATATGCACATG-ATGTAT
1 GATATGCACATGTATGTAT
69910307 TCATTTATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (19 bp):
GATATGCACATGTATGTAT
Found at i:69910393 original size:26 final size:25
Alignment explanation
Indices: 69910349--69910415 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 25
69910339 GAGGAAGTGC
*
69910349 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69910374 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCA
69910400 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
69910416 GGTTATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 16 0.41
26 23 0.59
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69910432 original size:24 final size:25
Alignment explanation
Indices: 69910348--69910432 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
69910338 GGAGGAAGTG
* *
69910348 CAAAAG-GGCTTTGCCCCAGTTTAC
1 CAAAAGAGGCTTTGCCCCAGGTTAT
*
69910372 CGAAAAG-GGCTTTTGCCCCAGTTTAT
1 C-AAAAGAGGC-TTTGCCCCAGGTTAT
69910398 CAAAA-AGGGCTTTGCCCC-GGTTAT
1 CAAAAGA-GGCTTTGCCCCAGGTTAT
*
69910422 TAAAAGAGGCT
1 CAAAAGAGGCT
69910433 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
24 14 0.26
25 21 0.40
26 18 0.34
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGGTTAT
Found at i:69910677 original size:31 final size:31
Alignment explanation
Indices: 69910639--69910722 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
69910629 TTGGTACAGT
69910639 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
69910670 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
69910701 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
69910723 CTGAGATTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:69913063 original size:35 final size:35
Alignment explanation
Indices: 69913024--69913093 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
69913014 GCCTGTGAGA
69913024 ATGGTGCATTTGAAAATTTTTATAGGTACGAAGGT
1 ATGGTGCATTTGAAAATTTTTATAGGTACGAAGGT
69913059 ATGGTGCATTTGAAAATTTTTATAGGTACGAAGGT
1 ATGGTGCATTTGAAAATTTTTATAGGTACGAAGGT
69913094 TTTCTTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (35 bp):
ATGGTGCATTTGAAAATTTTTATAGGTACGAAGGT
Found at i:69922897 original size:46 final size:47
Alignment explanation
Indices: 69922728--69922894 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 47
69922718 AACCCGCCCT
* * *
69922728 TAAGTGAACTAGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCGGACATTCGCATCCA
* * ** * *
69922774 TAAGTGAACTCAGACTCAACTCAACTAGCTAAGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCG--GAC-A-TTCGCATCCA
* * *
69922822 TCA-CGAACTCGGACTCAACTCAATGAG-TTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCGGACATTCGCATCCA
69922867 TAAGTGAACTCGGACTCAACTCAACGAG
1 TAAGTGAACTCGGACTCAACTCAACGAG
69922895 TTCTGATGCT
Statistics
Matches: 93, Mismatches: 19, Indels: 18
0.72 0.15 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 51 0.55
47 21 0.23
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTTCGGACATTCGCATCCA
Found at i:69922919 original size:46 final size:45
Alignment explanation
Indices: 69922826--69922911 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
69922816 TACATCTCAC
* * *
69922826 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
* *
69922872 GAACTCGGACTCAACTCAACGAGTTCTG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
69922912 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:69923376 original size:16 final size:16
Alignment explanation
Indices: 69923335--69923378 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 16
69923325 ACTTTGAAAA
*
69923335 AATTACACTTTTGCCT
1 AATTACACTTTTGCAT
*
69923351 --TTAAACTTTTGCAT
1 AATTACACTTTTGCAT
69923365 AATTACACTTTTGC
1 AATTACACTTTTGC
69923379 CCCTAGGCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 12 0.52
16 11 0.48
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.45
Consensus pattern (16 bp):
AATTACACTTTTGCAT
Found at i:69924321 original size:14 final size:14
Alignment explanation
Indices: 69924302--69924329 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69924292 TTCTTGCACA
69924302 CTTTATCAACAAAC
1 CTTTATCAACAAAC
69924316 CTTTATCAACAAAC
1 CTTTATCAACAAAC
69924330 ACATTCTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
CTTTATCAACAAAC
Done.