Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 209 of 320
Found at i:69928737 original size:40 final size:40
Alignment explanation
Indices: 69928642--69928871 Score: 320
Period size: 40 Copynumber: 5.8 Consensus size: 40
69928632 GGATGATAAT
* * * * **
69928642 CGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
69928682 CGGGC-AAGTCCCGAAGGGATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
69928721 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
69928761 CAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
69928801 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATC
* *
69928841 CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69928872 AGCTATATCC
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 32 0.19
40 137 0.80
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:69930913 original size:21 final size:21
Alignment explanation
Indices: 69930889--69930940 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
69930879 AATAGGGCAT
*
69930889 ACGCCCGTGTGGGAGGGTAAC
1 ACGCCCGTGTGAGAGGGTAAC
69930910 ACGCCCGTGTGAGAGGGTAAC
1 ACGCCCGTGTGAGAGGGTAAC
*
69930931 ATGCCCGTGT
1 ACGCCCGTGT
69930941 AAAATTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.17
Consensus pattern (21 bp):
ACGCCCGTGTGAGAGGGTAAC
Found at i:69932253 original size:46 final size:45
Alignment explanation
Indices: 69932156--69932321 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 45
69932146 GTGTCGATGC
* *
69932156 CATGTCCC-AACAGGGTCTTACACTGGC--ACATCTCGTAGCCAATG
1 CATGTCCCAAACA-TGTCTTACACTGGCTTACGTCTCG-AGCCAATG
*
69932200 CATGTCCCAAACATGTCTTACACTGGCTTACGTCACGAGGCCAATG
1 CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA-GCCAATG
* * * * *
69932246 CATGTCCCAAACATGTCTCACACTAGCTTACGTCTCAATGTCGATG
1 CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA-GCCAATG
*
69932292 CCATGTCCCATACATGGTCTTACACTGGCT
1 -CATGTCCCAAACAT-GTCTTACACTGGCT
69932322 CTCATAATGT
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
44 21 0.20
45 5 0.05
46 52 0.50
47 13 0.13
48 12 0.12
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (45 bp):
CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGCCAATG
Found at i:69934203 original size:32 final size:32
Alignment explanation
Indices: 69934162--69934227 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
69934152 GGGTGTTCGA
69934162 CACTTACACCCATATAAAGCCTCATAAGGCGC
1 CACTTACACCCATATAAAGCCTCATAAGGCGC
69934194 CACTTACACCCATATAAAGCCTCATAAGGCGC
1 CACTTACACCCATATAAAGCCTCATAAGGCGC
69934226 CA
1 CA
69934228 TTTTCAAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.18
Consensus pattern (32 bp):
CACTTACACCCATATAAAGCCTCATAAGGCGC
Found at i:69939965 original size:46 final size:45
Alignment explanation
Indices: 69939718--69940026 Score: 167
Period size: 46 Copynumber: 6.5 Consensus size: 45
69939708 ATGTTGAGGC
* * * * *
69939718 CATGTCCCAGACATGGTCTTACACTGGCTCA-TTCATCAAGTCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCGAGCCGATG
* * ** * *
69939764 CCATGTCCTAGACATTGTCTTACACTGAC-TATCGAAATCGAGGCTGACG
1 -CATGTCCCAGACA-TGTCTTACACTGGCTTA-CG-TCTCGA-GCCGATG
* * * * * *
69939813 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGTCGATAC
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACGTCT-CGAGCCGAT-G
* * * *
69939864 CATGTCCCAGACAGGGTCTTACACTGAC--ACATCTCGTAGCCGGTG
1 CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCG-AGCCGATG
*
69939909 CATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGA-GCCGATG
* * * * *
69939955 CATGTCCCAGACATGTCTCACACTAGCTTATGTCTCAATGCCTATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGA-GCCGATG
*
69940001 CCATGTCACAGACATGGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
69940027 AACTCTTATA
Statistics
Matches: 201, Mismatches: 43, Indels: 35
0.72 0.15 0.13
Matches are distributed among these distances:
44 12 0.06
45 16 0.08
46 61 0.30
47 37 0.18
48 14 0.07
49 27 0.13
50 29 0.14
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGCCGATG
Found at i:69943965 original size:19 final size:19
Alignment explanation
Indices: 69943941--69943977 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
69943931 TTATTTTCAG
* *
69943941 ATTTATCTACCTAAATAAT
1 ATTTATATACCAAAATAAT
69943960 ATTTATATACCAAAATAA
1 ATTTATATACCAAAATAA
69943978 CTTTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTATATACCAAAATAAT
Found at i:69946464 original size:50 final size:51
Alignment explanation
Indices: 69946387--69946515 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
69946377 GACCATGGCA
69946387 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
69946438 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
69946488 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
69946516 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:69946529 original size:31 final size:31
Alignment explanation
Indices: 69946491--69946639 Score: 230
Period size: 31 Copynumber: 4.8 Consensus size: 31
69946481 ACAAATGACA
*
69946491 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
69946522 AGTGAAAAGTGGTAGCTTCTGCTACCTGGTC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
69946553 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
69946584 AGTGAAATA-TGGTAGCTTCGGCTACCTGATC
1 AGTGAAA-AGTGGTAGCTTCGGCTACCTGATC
*
69946615 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
69946640 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
30 3 0.03
31 103 0.94
32 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:69946734 original size:47 final size:46
Alignment explanation
Indices: 69946664--69946829 Score: 162
Period size: 47 Copynumber: 3.7 Consensus size: 46
69946654 AAGTGATTTC
* * *
69946664 CGTATAAGACCATATCTGGGATATGGCATCTGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
69946710 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
69946757 CGTGTAAGACCGTAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG-ATA
* * * *
69946799 TGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
69946830 TTATGTGAAG
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
41 7 0.07
42 30 0.29
46 26 0.25
47 41 0.39
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:69946815 original size:42 final size:43
Alignment explanation
Indices: 69946758--69946872 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
69946748 TATGTGATTC
* *
69946758 GTGTAAGACCGTAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
69946800 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
69946842 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
69946873 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:69951961 original size:22 final size:22
Alignment explanation
Indices: 69951936--69951980 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69951926 AAGTGGGAGA
69951936 TTGTTCAGAAATGTGCCCATAT
1 TTGTTCAGAAATGTGCCCATAT
**
69951958 TTGTTGGGAAATGTGCCCATAT
1 TTGTTCAGAAATGTGCCCATAT
69951980 T
1 T
69951981 GTAGTAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (22 bp):
TTGTTCAGAAATGTGCCCATAT
Found at i:69951993 original size:22 final size:22
Alignment explanation
Indices: 69951944--69951993 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
69951934 GATTGTTCAG
* *
69951944 AAATGTGCCCATATTTGTTGGG
1 AAATGTGCCCATATTTGTAGGA
*
69951966 AAATGTGCCCATA-TTGTAGTA
1 AAATGTGCCCATATTTGTAGGA
69951987 AACATGT
1 AA-ATGT
69951994 AATTGTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (22 bp):
AAATGTGCCCATATTTGTAGGA
Found at i:69952079 original size:16 final size:16
Alignment explanation
Indices: 69952058--69952088 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69952048 TTCACTATTA
*
69952058 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
69952074 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
69952089 GCATGCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:69953672 original size:39 final size:39
Alignment explanation
Indices: 69953619--69953719 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
69953609 GGACTTTAGC
* * * * *
69953619 CCGGACATATTTCCAGCACGTAGCCTGGAAACCTTAGGT
1 CCGGATATAATTCCAGCACATAGCCTGCAAACCTTAAGT
* * *
69953658 CCGGTTATAATTCCAACACATAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAAACCTTAAGT
69953697 CCGGATATAATTCCAGCACATAG
1 CCGGATATAATTCCAGCACATAG
69953720 TGTAATAGCC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCAAACCTTAAGT
Found at i:69956160 original size:37 final size:37
Alignment explanation
Indices: 69956110--69956188 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
69956100 TTATTACGAA
* *
69956110 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
69956147 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
69956184 GTCTT
1 GTCTT
69956189 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:69956466 original size:47 final size:47
Alignment explanation
Indices: 69956306--69956671 Score: 642
Period size: 47 Copynumber: 7.7 Consensus size: 47
69956296 GCCCTTCGGG
*
69956306 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
69956356 GCTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
69956405 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69956452 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
69956499 CCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
69956546 GCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69956593 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69956640 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
69956672 ATACTATCAT
Statistics
Matches: 310, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 225 0.73
49 82 0.26
50 3 0.01
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:69958998 original size:40 final size:38
Alignment explanation
Indices: 69958953--69959178 Score: 238
Period size: 40 Copynumber: 5.7 Consensus size: 38
69958943 AAGTGAATAT
*
69958953 ATCCGGATTAAGATCCGAAGGCATTTGTGCGAGATACAA
1 ATCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACAA
*
69958992 ATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGATACAA
1 A-TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACAA
* *
69959032 ATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAA
1 A-TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATAC-AA
* *
69959073 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATCAA
1 ATCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATA-CAA
* * *
69959113 ATCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAA
1 ATCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATAC-AA
* * *
69959152 AACCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGT-CCGAAGGCATTTG
69959179 AACGAGGAGC
Statistics
Matches: 168, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 34 0.20
40 129 0.77
41 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
ATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACAA
Found at i:69959051 original size:80 final size:80
Alignment explanation
Indices: 69958914--69959178 Score: 290
Period size: 80 Copynumber: 3.3 Consensus size: 80
69958904 TTGAATGCTG
* * * * **
69958914 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAAT-ATATCCGGATTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T--ATCAAATCCGGGTTAAGCCCCGAAGGCA
69958976 TTTGTGCGAGATAC-AAA
63 TTTGTGCGAGATACTAAA
* *
69958993 TTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGGCAT
69959057 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
* * * *
69959074 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATCAAATCCGGGTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTT
* *
69959138 GTGTGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
69959153 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
69959179 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
79 40 0.25
80 102 0.64
81 16 0.10
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:69959130 original size:120 final size:121
Alignment explanation
Indices: 69958914--69959142 Score: 297
Period size: 120 Copynumber: 1.9 Consensus size: 121
69958904 TTGAATGCTG
* * * *
69958914 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCCGAAGGCTTTGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
69958979 GTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATT-TGTGCGAGATACAAAT
66 GTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGTGCGAGATACAAAT
* * *
69959034 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCG-AGAT-ACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGCCCCGAAGG-CTTTGTGCGAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* * *
69959096 TTCGTGCGAGTTATCAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTG
63 TTCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGTG
69959143 AGTTACTAAA
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
119 1 0.01
120 76 0.81
121 17 0.18
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGCCCCGAAGGCTTTGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
GTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGTGCGAGATACAAAT
Found at i:69959196 original size:79 final size:80
Alignment explanation
Indices: 69958953--69959211 Score: 210
Period size: 80 Copynumber: 3.3 Consensus size: 80
69958943 AAGTGAATAT
* * * *
69958953 ATCCGGATTAAGAT-CCGAAGG-CATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGC
1 ATCCGGGTTAAG-TCCCGAAGGCCA-TTGTGCGAGATACTAAA-ACCGGGCTAAGTCCCGAAGGC
* **
69959015 ATTTGTGCGAGAT-A-CAA
63 ATTCGAACGAG-TGAGCAA
* * * *
69959032 ATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 A-TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
69959097 TCGTGCGAGTTATCAA
65 TCGAACGAGTGAGCAA
* * * *
69959113 ATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
69959177 TGAACGAG-GAGCTAT
66 CGAACGAGTGAGC-AA
*
69959192 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
69959212 TACGTGATTT
Statistics
Matches: 152, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
78 16 0.11
79 49 0.32
80 79 0.52
81 8 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGTGAGCAA
Found at i:69962781 original size:68 final size:64
Alignment explanation
Indices: 69962716--69962923 Score: 197
Period size: 67 Copynumber: 3.2 Consensus size: 64
69962706 CATCATGTGT
*
69962716 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCACATGGGTGATACAATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCACATGGGTGATACAATGTGTACACCATG
69962781 TAG
62 TAG
* * * * * * *
69962784 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGCTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGT-GATACA-ATG-TGTACACCATGT
69962849 AG
63 AG
* * * * *
69962851 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATAC-AATGTGTACACCATGTAG
69962913 TACAAGAGAGC
1 -ACAAGAGAGC
69962924 CGAACTATAT
Statistics
Matches: 116, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 20 0.17
65 10 0.09
66 20 0.17
67 33 0.28
68 13 0.11
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACAATGTGTACACCATGTAG
Found at i:69968847 original size:55 final size:55
Alignment explanation
Indices: 69968763--69968876 Score: 219
Period size: 55 Copynumber: 2.1 Consensus size: 55
69968753 GAAAAAGCCC
*
69968763 GTTTGAACCTTGGGAATAGGTTAGAATACAAGTGACATGTCACTAAGATATTTGA
1 GTTTGAACCTTGGGAATAGATTAGAATACAAGTGACATGTCACTAAGATATTTGA
69968818 GTTTGAACCTTGGGAATAGATTAGAATACAAGTGACATGTCACTAAGATATTTGA
1 GTTTGAACCTTGGGAATAGATTAGAATACAAGTGACATGTCACTAAGATATTTGA
69968873 GTTT
1 GTTT
69968877 CGAGCTCGTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (55 bp):
GTTTGAACCTTGGGAATAGATTAGAATACAAGTGACATGTCACTAAGATATTTGA
Found at i:69974383 original size:53 final size:54
Alignment explanation
Indices: 69974244--69974402 Score: 196
Period size: 53 Copynumber: 3.0 Consensus size: 54
69974234 TTATCTTCTT
* * * **
69974244 TCCCCACATGACGCCATAATCCCAAACTAGGTCTTACACTATGTGGTCTTCTTT
1 TCCCCATATGATGCCATAATCCCAAACTAGGTCTTACACTATATGGTCTTCTCA
* * *
69974298 TCCCTATATGATGCCAT-AGCCTCAAACTAGGTCTTACACTTTATGGTCTT-TCA
1 TCCCCATATGATGCCATAATCC-CAAACTAGGTCTTACACTATATGGTCTTCTCA
* * *
69974351 TCCCCATATGATGCCATAATCCCAGACTAGGTCTTACAATATATAGTCTTCT
1 TCCCCATATGATGCCATAATCCCAAACTAGGTCTTACACTATATGGTCTTCT
69974403 TGCCATGACC
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 44 0.50
54 44 0.50
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (54 bp):
TCCCCATATGATGCCATAATCCCAAACTAGGTCTTACACTATATGGTCTTCTCA
Found at i:69975191 original size:20 final size:22
Alignment explanation
Indices: 69975145--69975192 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
69975135 GAAGGCAACC
**
69975145 CTTCTTTAACTTAACCTGAGTA
1 CTTCTTTAACTTAACCCCAGTA
69975167 C-TCTTTAA-TTAACCCCAGT-
1 CTTCTTTAACTTAACCCCAGTA
69975186 CTTCTTT
1 CTTCTTT
69975193 GGAACTAGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.04
20 14 0.61
21 7 0.30
22 1 0.04
ACGTcount: A:0.23, C:0.27, G:0.06, T:0.44
Consensus pattern (22 bp):
CTTCTTTAACTTAACCCCAGTA
Found at i:69975448 original size:29 final size:30
Alignment explanation
Indices: 69975403--69975474 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
69975393 CTTTTAGTTT
69975403 ATTTCTCTCATAGGTTACCAGTCAGATTTC
1 ATTTCTCTCATAGGTTACCAGTCAGATTTC
* *
69975433 ATTT-TCTCATGGGTTACCAGTTAGATTTC
1 ATTTCTCTCATAGGTTACCAGTCAGATTTC
*
69975462 ATTTATCGTCATA
1 ATTTCTC-TCATA
69975475 ATCTGACTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 27 0.73
30 6 0.16
31 4 0.11
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (30 bp):
ATTTCTCTCATAGGTTACCAGTCAGATTTC
Found at i:69980485 original size:17 final size:17
Alignment explanation
Indices: 69980455--69980487 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
69980445 TGGGTCCTAA
69980455 AAATGCTTCATCTCCTC
1 AAATGCTTCATCTCCTC
69980472 AAAT-CTTCAGTCTCCT
1 AAATGCTTCA-TCTCCT
69980488 ATGTGGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATGCTTCATCTCCTC
Found at i:69980790 original size:17 final size:18
Alignment explanation
Indices: 69980770--69980804 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
69980760 TCTAAAAGTG
69980770 CTTTTGGAGCCA-AAGCA
1 CTTTTGGAGCCATAAGCA
*
69980787 CTTTTGGCGCCATAAGCA
1 CTTTTGGAGCCATAAGCA
69980805 ATAAAGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (18 bp):
CTTTTGGAGCCATAAGCA
Found at i:69983096 original size:161 final size:162
Alignment explanation
Indices: 69982831--69983156 Score: 557
Period size: 161 Copynumber: 2.0 Consensus size: 162
69982821 TTGATGATTC
* *
69982831 ACCTGATGATTTCAAACATGAAGCATTAATAACATTGAAAGTCAAAGAACCAACGGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
* *
69982896 CTACAAAGGTAACATTATTTGTATGTTTATCTTTCCAGGGAAAATCACCATTCTTACTACTATCG
66 CTACAAAGGTAACATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
69982961 CTGCAGTTTGAGGATT-GTCTTTAATGGCAAT
131 CTGCAGTTTGAGGATTCGTCTTTAATGGCAAT
69982992 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
* * *
69983057 CTACAAATGTGGA-ATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTGCTACTATC
66 CTACAAAGGT-AACATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATC
*
69983121 GCTGCAGTTTGAGGTTTCGTCTTTAATGGCAAT
130 GCTGCAGTTTGAGGATTCGTCTTTAATGGCAAT
69983154 ACC
1 ACC
69983157 ACCAATATCA
Statistics
Matches: 155, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
161 136 0.88
162 19 0.12
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (162 bp):
ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
CTACAAAGGTAACATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
CTGCAGTTTGAGGATTCGTCTTTAATGGCAAT
Found at i:69984679 original size:21 final size:21
Alignment explanation
Indices: 69984623--69984679 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
69984613 ACACATAGGT
69984623 TTAAATCATTTT--AAACCATA
1 TTAAAT-ATTTTCCAAACCATA
*
69984643 -TAAATATTTACACAAA-CATA
1 TTAAATATTTTC-CAAACCATA
69984663 TTAAATAATTTTCCAAA
1 TTAAAT-ATTTTCCAAA
69984680 AAATTATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
18 4 0.13
19 5 0.17
20 4 0.13
21 12 0.40
22 5 0.17
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (21 bp):
TTAAATATTTTCCAAACCATA
Found at i:69986964 original size:14 final size:14
Alignment explanation
Indices: 69986945--69986975 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
69986935 ACTATCTTTA
69986945 CATTGAGAGTCCGC
1 CATTGAGAGTCCGC
*
69986959 CATTGATAGTCCGC
1 CATTGAGAGTCCGC
69986973 CAT
1 CAT
69986976 GACTATTCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (14 bp):
CATTGAGAGTCCGC
Found at i:69988727 original size:35 final size:35
Alignment explanation
Indices: 69988660--69988754 Score: 109
Period size: 35 Copynumber: 2.7 Consensus size: 35
69988650 ATATTTTGAT
* * ** *
69988660 TATGATTCACATGTTAAGTATGCTATTGTTCTGCC
1 TATGATTCACATGTTAAGCATGCCATAATTCTGAC
*
69988695 TATGATTCACATGTTAAGCATGCCATAATTCTGAT
1 TATGATTCACATGTTAAGCATGCCATAATTCTGAC
* * *
69988730 TCTGATTCGCATGTTAAACATGCCA
1 TATGATTCACATGTTAAGCATGCCA
69988755 CTGTGTTAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (35 bp):
TATGATTCACATGTTAAGCATGCCATAATTCTGAC
Found at i:69997343 original size:22 final size:21
Alignment explanation
Indices: 69997312--69997362 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
69997302 GGTCAAAATG
*
69997312 CCCATGTGGAGGAAGGCACACA
1 CCCATGTGGAAG-AGGCACACA
* *
69997334 CCCATTTGGAAGAGGTACACA
1 CCCATGTGGAAGAGGCACACA
*
69997355 CCCGTGTG
1 CCCATGTG
69997363 AAACAAGGAC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.16
Consensus pattern (21 bp):
CCCATGTGGAAGAGGCACACA
Found at i:70007251 original size:46 final size:46
Alignment explanation
Indices: 70007101--70007316 Score: 226
Period size: 46 Copynumber: 4.7 Consensus size: 46
70007091 TTTGTATGCT
* * *
70007101 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGAGAGCC
* * * * *
70007147 AGTGTAAGACCATGTCTGGGACATGGGATCAACATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGAGAGCC
*
70007195 AGTATAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-AGAGCC
* *
70007241 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGAGAGCC
*
70007285 AGTGTAAGACCATGTTTGGGACATGGCATCAG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG
70007317 ATGTGTTAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 67 0.47
47 29 0.20
48 21 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAGAGCC
Found at i:70009041 original size:14 final size:14
Alignment explanation
Indices: 70009022--70009053 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
70009012 TGACAGAGTA
70009022 TGAGCGTGAGTTTG
1 TGAGCGTGAGTTTG
70009036 TGAGCGTGAGTTTG
1 TGAGCGTGAGTTTG
70009050 TGAG
1 TGAG
70009054 ATTCAGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.44, T:0.34
Consensus pattern (14 bp):
TGAGCGTGAGTTTG
Found at i:70016019 original size:13 final size:13
Alignment explanation
Indices: 70016001--70016026 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70015991 TAAGAAATCG
70016001 CACACGGGCGTGT
1 CACACGGGCGTGT
70016014 CACACGGGCGTGT
1 CACACGGGCGTGT
70016027 TCCTGCCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:70022269 original size:47 final size:46
Alignment explanation
Indices: 70022159--70022289 Score: 131
Period size: 47 Copynumber: 2.8 Consensus size: 46
70022149 TTATTTGTGT
* * * *
70022159 GCTAGTGTAAGACATGTCTAGGACAT-GCATCAGCAACATTATGAGA
1 GCTAGTGTAAGACATGTCT-GGACATGGCATCGGCATCATGACGAGA
* *
70022205 GCCAGTGTTAGACCATGTCTGGCACATGGCATCGGCATCGA-GACGAGA
1 GCTAGTGTAAGA-CATGTCTGG-ACATGGCATCGGCATC-ATGACGAGA
* *
70022253 GCTAGTGTAAGACATGTTTGGGACATGGCATTGGCAT
1 GCTAGTGTAAGACATGTCT-GGACATGGCATCGGCAT
70022290 TATACCCTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
46 12 0.17
47 31 0.44
48 26 0.37
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGACATGGCATCGGCATCATGACGAGA
Found at i:70023443 original size:18 final size:19
Alignment explanation
Indices: 70023420--70023455 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70023410 GCCCCAATTT
70023420 TTGG-AAATTTTAAAAATG
1 TTGGAAAATTTTAAAAATG
70023438 TTGGAAAATTTTAAAAAT
1 TTGGAAAATTTTAAAAAT
70023456 TCTGTGTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (19 bp):
TTGGAAAATTTTAAAAATG
Found at i:70024193 original size:27 final size:27
Alignment explanation
Indices: 70024154--70024257 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
70024144 GGAAGCGTCT
*
70024154 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
70024181 TGGTGGCTCTGCCACATATT-TCT-ATTC
1 TGGTGGCTCTGCCACA-ATTATCTGA-TC
* *
70024208 TAGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
* *
70024236 TGGTGACTCTGTCAC-ATTATCT
1 TGGTGGCTCTGCCACAATTATCT
70024258 ATTCTGGCAG
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
26 4 0.06
27 44 0.67
28 17 0.26
29 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:70024259 original size:54 final size:54
Alignment explanation
Indices: 70024156--70024262 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
70024146 AAGCGTCTTG
* *
70024156 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATTCTA
* * *
70024210 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATTCT
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATTCT
70024263 GGCAGCCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATTCTA
Found at i:70030623 original size:46 final size:47
Alignment explanation
Indices: 70030551--70030673 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 47
70030541 GGTGGTATGT
* *
70030551 GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCATT-G-ATACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAGAATAC-A
* *
70030597 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGAATATACA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAG-A-ATACA
*
70030646 -AGCTAGTGTAAGACCTGTCTGGGACATG
1 GAGCTAGTGTAAGACATGTCTGGGACATG
70030674 GCGTCAGCTT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
46 35 0.51
47 1 0.01
48 27 0.40
49 1 0.01
50 4 0.06
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAGAATACA
Found at i:70032122 original size:16 final size:18
Alignment explanation
Indices: 70032103--70032141 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
70032093 AAATCATAAG
70032103 ATAAATAA-AAATAAAA-
1 ATAAATAATAAATAAAAT
*
70032119 ATAAATAATATATAAAAT
1 ATAAATAATAAATAAAAT
70032137 ATAAA
1 ATAAA
70032142 GTTCAACGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 7 0.35
18 5 0.25
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAATAATAAATAAAAT
Found at i:70038033 original size:5 final size:5
Alignment explanation
Indices: 70038023--70038047 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70038013 TATCTCCTGA
70038023 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
70038048 TATAAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:70039040 original size:20 final size:20
Alignment explanation
Indices: 70039015--70039053 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
70039005 TACCTAAGAC
70039015 TCATTACAAACCTAGCCAAA
1 TCATTACAAACCTAGCCAAA
70039035 TCATTACAAACCTAGCCAA
1 TCATTACAAACCTAGCCAA
70039054 GATATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.31, G:0.05, T:0.21
Consensus pattern (20 bp):
TCATTACAAACCTAGCCAAA
Found at i:70040153 original size:50 final size:50
Alignment explanation
Indices: 70040078--70040179 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
70040068 ACTTAGTAAG
*
70040078 TTCGTATTAACTTAAACATAAACTTACCCTTATTAAACTCAATTTATAAA
1 TTCGTATTAACTCAAACATAAACTTACCCTTATTAAACTCAATTTATAAA
*
70040128 TTCGTATTAACTCAAACATAAACTTACCCTTCTTAAACTCAATTTATAAA
1 TTCGTATTAACTCAAACATAAACTTACCCTTATTAAACTCAATTTATAAA
70040178 TT
1 TT
70040180 ATGCATAACA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (50 bp):
TTCGTATTAACTCAAACATAAACTTACCCTTATTAAACTCAATTTATAAA
Found at i:70040166 original size:27 final size:27
Alignment explanation
Indices: 70040082--70040169 Score: 80
Period size: 27 Copynumber: 3.4 Consensus size: 27
70040072 AGTAAGTTCG
*
70040082 TATT-AACTTAAACATAAACTTACCCT
1 TATTAAACTCAAACATAAACTTACCCT
** *
70040108 TATTAAACTCAATTTATAAA-TT---CG
1 TATTAAACTCAA-ACATAAACTTACCCT
70040132 TATT-AACTCAAACATAAACTTACCCT
1 TATTAAACTCAAACATAAACTTACCCT
*
70040158 TCTTAAACTCAA
1 TATTAAACTCAA
70040170 TTTATAAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 13
0.69 0.12 0.19
Matches are distributed among these distances:
22 5 0.11
23 9 0.19
24 5 0.11
26 8 0.17
27 15 0.32
28 5 0.11
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.35
Consensus pattern (27 bp):
TATTAAACTCAAACATAAACTTACCCT
Found at i:70042791 original size:37 final size:37
Alignment explanation
Indices: 70042750--70042895 Score: 206
Period size: 37 Copynumber: 4.0 Consensus size: 37
70042740 GGCGAATGTA
*
70042750 TAGCTCTTATGAGCATTTGGCGTGTTTACGGTTGGAT
1 TAGCTCTTATGAGCATTTGGCATGTTTACGGTTGGAT
* *
70042787 TAGCTCTTATGAGCATTTGGCGTGTTTATGGTTGGAT
1 TAGCTCTTATGAGCATTTGGCATGTTTACGGTTGGAT
* * *
70042824 TAGATCTTATGAGCATTTGGCACG-TTATTGGTTGGAT
1 TAGCTCTTATGAGCATTTGGCATGTTTA-CGGTTGGAT
*
70042861 TAGCTCTTATGAGCGTTTGGCATGTTT-CGGTTGGA
1 TAGCTCTTATGAGCATTTGGCATGTTTACGGTTGGA
70042896 CTATTTGTGT
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
36 10 0.10
37 87 0.88
38 2 0.02
ACGTcount: A:0.17, C:0.12, G:0.29, T:0.41
Consensus pattern (37 bp):
TAGCTCTTATGAGCATTTGGCATGTTTACGGTTGGAT
Found at i:70051193 original size:39 final size:39
Alignment explanation
Indices: 70051126--70051387 Score: 400
Period size: 39 Copynumber: 6.7 Consensus size: 39
70051116 ACAAAGCATG
* * *
70051126 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
70051166 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70051206 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70051245 CGGGACTTAGCCCGGATAGAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
70051284 CGGGACTTAGCCCGGGTATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
70051323 CAGGACTTAGCCTGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
70051362 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
70051388 TTATAAAGTC
Statistics
Matches: 205, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 185 0.90
40 20 0.10
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:70051493 original size:28 final size:28
Alignment explanation
Indices: 70051460--70051541 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
70051450 ATTTAATCAT
*
70051460 TCAATATTTTGTACACTAAGTGTCATTC
1 TCAATATTTTGTACACTAAGTGCCATTC
* * *
70051488 TCAATATCTTGCACATTAAGTGCCATTC
1 TCAATATTTTGTACACTAAGTGCCATTC
* * *
70051516 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTTGTACACTAAGTGCCAT
70051542 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (28 bp):
TCAATATTTTGTACACTAAGTGCCATTC
Found at i:70056905 original size:55 final size:55
Alignment explanation
Indices: 70056817--70056929 Score: 154
Period size: 55 Copynumber: 2.1 Consensus size: 55
70056807 TTTGTGTTAA
* *
70056817 TTTAACAGGTTCAACCACGGGTGTTCCATACGGGCGTGTCAAACGCCCGTGCTGT
1 TTTAACAGGTTCAACCACGGGTCTTCCACACGGGCGTGTCAAACGCCCGTGCTGT
* * * ** *
70056872 TTTAACAGGTTCACCCACGGTTCTTCCACACGGGTGTGTCGCACGCCCGTGTTGT
1 TTTAACAGGTTCAACCACGGGTCTTCCACACGGGCGTGTCAAACGCCCGTGCTGT
70056927 TTT
1 TTT
70056930 GGCAGGCTCG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.29
Consensus pattern (55 bp):
TTTAACAGGTTCAACCACGGGTCTTCCACACGGGCGTGTCAAACGCCCGTGCTGT
Found at i:70056945 original size:55 final size:54
Alignment explanation
Indices: 70056817--70056946 Score: 134
Period size: 55 Copynumber: 2.4 Consensus size: 54
70056807 TTTGTGTTAA
* * *
70056817 TTTAACAGGTTCAACCACGGGTGTTCCATACGGGCGTGTCAAACGCCCGTGCTGT
1 TTTAACAGGCTC-ACCACGGGTCTTCCACACGGGCGTGTCAAACGCCCGTGCTGT
* * * ** *
70056872 TTTAACAGGTTCACCCACGGTTCTTCCACACGGGTGTGTCGCACGCCCGTGTTGT
1 TTTAACAGGCTCA-CCACGGGTCTTCCACACGGGCGTGTCAAACGCCCGTGCTGT
**
70056927 TTTGGCAGGCTCGACCACGG
1 TTTAACAGGCTC-ACCACGG
70056947 CCATATCATA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 1 0.02
55 61 0.97
56 1 0.02
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.26
Consensus pattern (54 bp):
TTTAACAGGCTCACCACGGGTCTTCCACACGGGCGTGTCAAACGCCCGTGCTGT
Found at i:70067613 original size:49 final size:49
Alignment explanation
Indices: 70067547--70067715 Score: 159
Period size: 49 Copynumber: 3.6 Consensus size: 49
70067537 CAACAAAGTC
** * * *
70067547 GATGCCATGTCAAAGACATGTCTTACACTGACTTTCATGTATCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGAGGCT
* * * *
70067596 GATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGAGGCT
* * * * *
70067645 GATGCCATGTCTCAGACAGGTATTACACTGA-T-ACA-C-AAC-AAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGAGGCT
* *
70067689 AACGCCATGTCCCAGACAGGTCTTACA
1 GATGCCATGTCCCAGACAGGTCTTACA
70067716 GTAGCTTGTA
Statistics
Matches: 99, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
44 26 0.26
45 2 0.02
46 1 0.01
47 2 0.02
48 1 0.01
49 67 0.68
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGAGGCT
Found at i:70069993 original size:26 final size:26
Alignment explanation
Indices: 70069964--70070024 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
70069954 AATTTTCTCG
* *
70069964 AAATTTTACCGATG-GTAAAATCGTTA
1 AAATTTTACCG-GGAGTAAAATCGTCA
*
70069990 AAATTTTATCGGGAGTAAAATCGTCA
1 AAATTTTACCGGGAGTAAAATCGTCA
70070016 AAATTTTAC
1 AAATTTTAC
70070025 TAGACTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.03
26 29 0.97
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATTTTACCGGGAGTAAAATCGTCA
Found at i:70078015 original size:25 final size:25
Alignment explanation
Indices: 70077978--70078044 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
70077968 TCATGTACAT
* *
70077978 GTATGCTCATACGAGTTGTGAATCG
1 GTATGCTCATACGAGCTGTAAATCG
*
70078003 GTATGCTCTTACGAGCTGTAAATCG
1 GTATGCTCATACGAGCTGTAAATCG
* * *
70078028 GTAAGCTTATATGAGCT
1 GTATGCTCATACGAGCT
70078045 AAGAATCAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (25 bp):
GTATGCTCATACGAGCTGTAAATCG
Found at i:70083882 original size:25 final size:24
Alignment explanation
Indices: 70083844--70083900 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
70083834 TTAGATCCCA
*
70083844 AAATTTTTATTTTAGA-AATCTTTT
1 AAATTTTTACTTTAGATAATC-TTT
*
70083868 AAATTTTTAACTTTATATAATCTTT
1 AAATTTTT-ACTTTAGATAATCTTT
*
70083893 AGATTTTT
1 AAATTTTT
70083901 TATAATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 8 0.29
25 16 0.57
26 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (24 bp):
AAATTTTTACTTTAGATAATCTTT
Found at i:70083906 original size:18 final size:18
Alignment explanation
Indices: 70083883--70083919 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
70083873 TTTAACTTTA
70083883 TATAATCTTTA-GATTTTT
1 TATAAT-TTTATGATTTTT
70083901 TATAATTTTATGATTTTT
1 TATAATTTTATGATTTTT
70083919 T
1 T
70083920 TAAAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TATAATTTTATGATTTTT
Found at i:70083951 original size:18 final size:19
Alignment explanation
Indices: 70083928--70083963 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
70083918 TTTAAAATAT
*
70083928 AAATTTTATAAA-TATTTA
1 AAATTTTAAAAATTATTTA
70083946 AAATTTTAAAAATTATTT
1 AAATTTTAAAAATTATTT
70083964 TGAATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTTTAAAAATTATTTA
Found at i:70086370 original size:44 final size:45
Alignment explanation
Indices: 70086298--70086419 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 45
70086288 AGGGTCAGGT
*
70086298 GCCGATGTCATGT-CCAGACATGGTCTTACACTGAC-ATCTCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTACCTCTCG-AG
* *
70086343 GCCGATGAATGTCCCAGACATGTCTTACACTGGCTTACCTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TACCTCTCGAG
* * *
70086389 GCCGAAGCATGTCCCAAACAAGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
70086420 AGCACTTGTC
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 16 0.24
45 16 0.24
46 34 0.52
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTACCTCTCGAG
Found at i:70092947 original size:13 final size:13
Alignment explanation
Indices: 70092929--70092953 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70092919 GCACACGTCC
70092929 GTGTGCCTGGCCA
1 GTGTGCCTGGCCA
70092942 GTGTGCCTGGCC
1 GTGTGCCTGGCC
70092954 CATGTCCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.40, T:0.24
Consensus pattern (13 bp):
GTGTGCCTGGCCA
Found at i:70095453 original size:40 final size:40
Alignment explanation
Indices: 70095392--70095569 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
70095382 CGGATGATAA
* *
70095392 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70095432 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70095472 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
70095512 CCGGGCTAAGTCCCGAAAGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
70095552 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70095570 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 15 0.12
40 110 0.88
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70099332 original size:29 final size:30
Alignment explanation
Indices: 70099293--70099371 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
70099283 CTTAATAATC
70099293 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
70099323 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
70099352 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70099372 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:70107312 original size:29 final size:30
Alignment explanation
Indices: 70107273--70107351 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
70107263 CTTAATAATC
70107273 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
70107303 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
70107332 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70107352 ATCTCATGGC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:70121095 original size:510 final size:511
Alignment explanation
Indices: 70120335--70121281 Score: 1707
Period size: 510 Copynumber: 1.9 Consensus size: 511
70120325 ATCTAAGAAA
* ** * * *
70120335 TTATAAAATAATTTATTTGACTCTAGATTTATGGTCCCGAGACCACTATTTCGACTAGGCCCTAA
1 TTATAAAATAATTTATTCGAAACCAGATTTATAGTCCCGAGACCACTATTCCGACTAGGCCCTAA
* * *
70120400 ATCGGGCAGTTACAAAAATACTGTCACATCCCATAAATCAAGAGTTAGTAAAATCGAGTTTGTGA
66 ATCGGGCAGTTACAAAAAAACTGTCACATCCCAAAAATCAAGAGTTAGTAAAATCGAGTTTATGA
70120465 ATCGAGAGAGAGTGGTCATGCCCAAATTTTCGAGATTATCTATATGTTTTAAGAAATAAATGAGG
131 ATCGAGAGAGAGTGGTCATGCCCAAATTTTCGAGATTATCTATATGTTTTAAGAAATAAATGAGG
*
70120530 TATTGGTTTGTTGGTTAACTGTTAGTGAAATGTTCCTTGAAACCTAAGCTCAAATCCCTTCTCTC
196 TATTAGTTTGTTGGTTAACTGTTAGTGAAATGTTCCTTGAAACCTAAGCTCAAATCCCTTCTCTC
70120595 ATATTATTTTTATTATTTTGCAAATTTTGCATCAAACCCTAGTATAAGACATGCCTTGTTTTTAA
261 ATATTATTTTTATTATTTTGCAAATTTTGCATCAAACCCTAGTATAAGACATGCCTTGTTTTTAA
*
70120660 AATAAACATTGCAAATTTATTTT-TGAATGAGAAAATAGCCTAGTGGCTAAAAGAAATATGAGAA
326 AATAAACATTGCAAATTTATTTTAAGAATGAGAAAATAGCCTAGTGGCTAAAAGAAATATGAGAA
*
70120724 AGTATGGAAATTAAAATAAGGTTCTAGGTTCAATTCCCTTGCCTTGCCTGTTGAAGAATGAGCCG
391 AGTATGGAAATTAAAATAAGGTTCTAGGTTCAATTCCCTTACCTTGCCTGTTGAAGAATGAGCCG
70120789 GCGACTCATAGGCAATGGCTTGGTTAAGGGAACCCACTGGAGCCGTAGTATAAGAC
456 GCGACTCATAGGCAATGGCTTGGTTAAGGGAACCCACTGGAGCCGTAGTATAAGAC
70120845 TTATAAAATAATTTATTCGAAACCAGATTTATAGTCCCGAGACCACTATTCCGACTAGGCCCTAA
1 TTATAAAATAATTTATTCGAAACCAGATTTATAGTCCCGAGACCACTATTCCGACTAGGCCCTAA
* *
70120910 ATCGGGTAGTTACAAAAAAACTGTCACATCCCAAAAATCGAGAGTTAGTAAAATCGAGTTTATGA
66 ATCGGGCAGTTACAAAAAAACTGTCACATCCCAAAAATCAAGAGTTAGTAAAATCGAGTTTATGA
* * *
70120975 ATCGAGAGAGAGTGGTCATGCCCTAATTTTTGAGATTATCTTTATGTTTTAAGAAATAAATGAGG
131 ATCGAGAGAGAGTGGTCATGCCCAAATTTTCGAGATTATCTATATGTTTTAAGAAATAAATGAGG
* *
70121040 TATTAGTTTGTTGGTTAACTGTTAGTGAAATGTTCCTTGAAACCTAAGTTCAAATCTCTTCTCTC
196 TATTAGTTTGTTGGTTAACTGTTAGTGAAATGTTCCTTGAAACCTAAGCTCAAATCCCTTCTCTC
*
70121105 ATATTATTTTTATTATTTTGCAAATTTTGCATCAAAGCCTAGTATAAGACATGCCTTGTTTTTAA
261 ATATTATTTTTATTATTTTGCAAATTTTGCATCAAACCCTAGTATAAGACATGCCTTGTTTTTAA
70121170 AATAAACATTGCAAATTTATTTTAAGAATGAGAAAATAGCCTAGTGGCTAAAAGAAATATGAGAA
326 AATAAACATTGCAAATTTATTTTAAGAATGAGAAAATAGCCTAGTGGCTAAAAGAAATATGAGAA
70121235 AGTATGGAAATTAAAATAAGGTTCTAGGTTCAATTCCCTTACCTTGC
391 AGTATGGAAATTAAAATAAGGTTCTAGGTTCAATTCCCTTACCTTGC
70121282 ATTTAAGTCA
Statistics
Matches: 416, Mismatches: 20, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
510 330 0.79
511 86 0.21
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (511 bp):
TTATAAAATAATTTATTCGAAACCAGATTTATAGTCCCGAGACCACTATTCCGACTAGGCCCTAA
ATCGGGCAGTTACAAAAAAACTGTCACATCCCAAAAATCAAGAGTTAGTAAAATCGAGTTTATGA
ATCGAGAGAGAGTGGTCATGCCCAAATTTTCGAGATTATCTATATGTTTTAAGAAATAAATGAGG
TATTAGTTTGTTGGTTAACTGTTAGTGAAATGTTCCTTGAAACCTAAGCTCAAATCCCTTCTCTC
ATATTATTTTTATTATTTTGCAAATTTTGCATCAAACCCTAGTATAAGACATGCCTTGTTTTTAA
AATAAACATTGCAAATTTATTTTAAGAATGAGAAAATAGCCTAGTGGCTAAAAGAAATATGAGAA
AGTATGGAAATTAAAATAAGGTTCTAGGTTCAATTCCCTTACCTTGCCTGTTGAAGAATGAGCCG
GCGACTCATAGGCAATGGCTTGGTTAAGGGAACCCACTGGAGCCGTAGTATAAGAC
Found at i:70125220 original size:23 final size:23
Alignment explanation
Indices: 70125174--70125221 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
70125164 TACAGAACTG
*
70125174 AATGGAACACTACCAAAGTAAGT
1 AATGGAACACTACCAAAGCAAGT
* * *
70125197 AATGGAATACTACTAAAGCGAGT
1 AATGGAACACTACCAAAGCAAGT
70125220 AA
1 AA
70125222 ACAGAGGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (23 bp):
AATGGAACACTACCAAAGCAAGT
Found at i:70127700 original size:26 final size:24
Alignment explanation
Indices: 70127670--70127719 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
70127660 AAATAAAAAA
*
70127670 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
70127696 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
70127720 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:70127739 original size:21 final size:21
Alignment explanation
Indices: 70127690--70127748 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
70127680 ATAATAAATC
*
70127690 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
70127710 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
70127732 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
70127749 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:70128482 original size:19 final size:18
Alignment explanation
Indices: 70128458--70128496 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70128448 ACTTATTTCA
70128458 AATTATTCTTCTAAAAAAT
1 AATTATT-TTCTAAAAAAT
* *
70128477 AATTATTTTTTCAAAAAT
1 AATTATTTTCTAAAAAAT
70128495 AA
1 AA
70128497 CATAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTATTTTCTAAAAAAT
Found at i:70134949 original size:3 final size:3
Alignment explanation
Indices: 70134941--70134979 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
70134931 AGATGATTAA
*
70134941 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG GTG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
70134980 GGGACAAACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:70143321 original size:120 final size:120
Alignment explanation
Indices: 70143151--70143392 Score: 441
Period size: 120 Copynumber: 2.0 Consensus size: 120
70143141 CATCCAAAAC
70143151 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
1 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
*
70143216 GA-TGACAGCTTATAACATTTGTATTCATGTATTCAATATATTCATATGTATAACT
66 -ATTGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
70143271 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
1 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
* *
70143336 ATTGATAGCTTATAACATGTGTATTCATGTGTTCAATATATTCATATGTATAACT
66 ATTGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
70143391 AA
1 AA
70143393 CTTATATGCA
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
119 1 0.01
120 117 0.99
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (120 bp):
AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
ATTGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
Found at i:70144465 original size:120 final size:120
Alignment explanation
Indices: 70144295--70144536 Score: 475
Period size: 120 Copynumber: 2.0 Consensus size: 120
70144285 CATCCAAAAC
70144295 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
1 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
70144360 GATGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
66 GATGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
70144415 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
1 AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
*
70144480 GATGACAGCTTATAACATGTGTATTCATGTGTTCAATATATTCATATGTATAACT
66 GATGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
70144535 AA
1 AA
70144537 CTTATATGCA
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (120 bp):
AAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTCA
GATGACAGCTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAACT
Found at i:70145610 original size:120 final size:120
Alignment explanation
Indices: 70145439--70145681 Score: 450
Period size: 120 Copynumber: 2.0 Consensus size: 120
70145429 ACATCCAAAA
*
70145439 TAAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTT
1 TAAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTC
70145504 AGATGACAACTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAAC
66 AGATGACAACTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAAC
70145559 TAAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTC
1 TAAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTC
* * *
70145624 AGATGACAGCTTATAGCATGTGTATTCATGTGTTCAATATATTCATATGTATAAC
66 AGATGACAACTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAAC
70145679 TAA
1 TAA
70145682 CTTATATGCA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (120 bp):
TAAGTAAAATCAATCTTTAAACATGTAGTATATTCACATACAACCAATATGCCTTTAGACACCTC
AGATGACAACTTATAACATGTGTATTCATGTATTCAATATATTCATATGTATAAC
Found at i:70147099 original size:21 final size:21
Alignment explanation
Indices: 70147067--70147149 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
70147057 CGAACACGCC
70147067 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* * * * *
70147088 AACAGGACCTCAAAAGGGTTG
1 AACAGAAGCTCATAAGAGCTG
*
70147109 AACAGAAGCTCATGAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
70147130 AACAGAAGCTCGTAAGAGCT
1 AACAGAAGCTCATAAGAGCT
70147150 AATCCACCCG
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:70150795 original size:35 final size:35
Alignment explanation
Indices: 70150749--70150819 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
70150739 GAAGGCAATG
70150749 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
1 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
70150784 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
1 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
70150819 T
1 T
70150820 GTGCTGAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (35 bp):
TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
Found at i:70152344 original size:19 final size:19
Alignment explanation
Indices: 70152320--70152365 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
70152310 CTCTCCTTCT
70152320 TTTGCATT-CATTCCACACA
1 TTTGCATTGCATTCCA-ACA
* *
70152339 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCAACA
70152358 TTTGCATT
1 TTTGCATT
70152366 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATTCCAACA
Found at i:70155956 original size:4 final size:4
Alignment explanation
Indices: 70155949--70155979 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
70155939 GGATAATAAT
70155949 AATA AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT
70155980 TTATTCCCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:70156359 original size:22 final size:24
Alignment explanation
Indices: 70156315--70156359 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
70156305 TAGGAGCATT
70156315 TAATTCATTTCGATCATAGCATCC
1 TAATTCATTTCGATCATAGCATCC
70156339 TAATT-ATTT-GA-CATAAGCATC
1 TAATTCATTTCGATCAT-AGCATC
70156360 ATATCTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.15
22 8 0.40
23 4 0.20
24 5 0.25
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (24 bp):
TAATTCATTTCGATCATAGCATCC
Found at i:70156412 original size:64 final size:64
Alignment explanation
Indices: 70156233--70156418 Score: 309
Period size: 64 Copynumber: 2.9 Consensus size: 64
70156223 ATTCATAACG
* * *
70156233 CATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCTTAATTATTTAACATAAGCATCA
1 CATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
70156297 CATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
1 CATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
* * * *
70156361 TATCTAGTTAGGAGCATTTAATTCATTTTGATCATAGCATCCTAATCATTTGGCATAA
1 CATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAA
70156419 ACATAGGCAT
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 115 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (64 bp):
CATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCA
Found at i:70156813 original size:89 final size:87
Alignment explanation
Indices: 70156497--70157393 Score: 854
Period size: 89 Copynumber: 10.2 Consensus size: 87
70156487 CCCTAAACAT
* * *
70156497 TAGTGGAGTAGAT-AGAAGAAAGCAAGCCTTAACCTCCTAAATAGTAGGGTAACAGGCTGAAGAT
1 TAGTGGAGCAGATCA-AAG-AAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGAT
* *
70156561 TGTAGATCTTGTCTCCCTAA-ATA
64 TGCAGATCTTGTCTCCCTAAGTTA
* * *
70156584 GTAGTGGAGCAGATCGAAGAAAGCGAGCCTTAACCCCCTAAGTAGTAAGGTAACAGGCTGAAGAT
1 -TAGTGGAGCAGATCAAAG-AAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGAT
* *
70156649 TTCAGATCTTGTCTCCCTAA-ATA
64 TGCAGATCTTGTCTCCCTAAGTTA
** * *
70156672 GTAGTGGAGCAGATCGAAA-AAGCAAGCCTTAATTCCCAAAGTAGTAGGGTAACAAGCTGAAGAT
1 -TAGTGGAGCAGATC-AAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGAT
70156736 TGCAGATCTTGTCTCCCTGAAGTTA
64 TGCAGATCTTGTCTCCCT-AAGTTA
* * *
70156761 CAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
1 TAGTGGAGCAGATCAAAGA-AGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
* * *
70156826 GTAAATCTTGTCTCCCTAA-ATA
65 GCAGATCTTGTCTCCCTAAGTTA
* * * * * *
70156848 GTAGTGGAGAAAATCGAAGAAGCAAGCTTTAACCCCCTAAGTAGTAGGGTAACAGGTTAAAGATT
1 -TAGTGGAGCAGATCAAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
* * **
70156913 ACAGATC-T-TATCCCTAA-ACA
65 GCAGATCTTGTCTCCCTAAGTTA
* *
70156933 GTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAAGGTAACAGGCTGAAGATT
1 -TAGTGGAGCAGATCAAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
*
70156998 GCAGATCTTGTCTCCCTAAAGTTG
65 GCAGATCTTGTCTCCCT-AAGTTA
* ** * * * *
70157022 CAGTGGAATAGATTAAAGACGGCGAA-CCTTAACCCCCTAAGTAGTAGGGTAATAGTCTGAAGAT
1 TAGTGGAGCAGATCAAAGA-AGC-AAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGAT
*
70157086 TGCAGATCTTGTCTCCCTGAAGTTG
64 TGCAGATCTTGTCTCCCT-AAGTTA
* * *
70157111 TAGTGGAACAGATCAAAGACGACGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
1 TAGTGGAGCAGATCAAAGAAG-CAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
* ***
70157176 GTAGATCTTGTCTCCCTAAACAA
65 GCAGATCTTGTCTCCCTAAGTTA
* * *
70157199 TAGTGGACCAAATCGAAGAAGCAAGCCTTAACCCCTTAACCCCTTAAGTAGTAGGGTAACAGGCT
1 TAGTGGAGCAGATCAAAGAAGCAAGCCTTAA---C----CCCC-TAAGTAGTAGGGTAACAGGCT
* * *
70157264 AAAGATTACAGA-----TCTCCCTAAG-CA
58 GAAGATTGCAGATCTTGTCTCCCTAAGTTA
* * * * *
70157288 GTAGTGGAGCAGATCAAAGACGGTGAA-CCTTAACCCCCTAAGCAGTAAGGTAACAGACTGAAGA
1 -TAGTGGAGCAGATCAAAGA-AG-CAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGA
* * * *
70157352 TAGCAGATCTTATCTCCTTGAAGTTG
63 TTGCAGATCTTGTCTCCCT-AAGTTA
* *
70157378 CAATGGAGCAGATCAA
1 TAGTGGAGCAGATCAA
70157394 GCTATAATTG
Statistics
Matches: 676, Mismatches: 100, Indels: 65
0.80 0.12 0.08
Matches are distributed among these distances:
83 27 0.04
84 4 0.01
85 75 0.11
86 2 0.00
87 121 0.18
88 168 0.25
89 208 0.31
90 28 0.04
91 7 0.01
92 2 0.00
94 4 0.01
95 30 0.04
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (87 bp):
TAGTGGAGCAGATCAAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG
CAGATCTTGTCTCCCTAAGTTA
Found at i:70157008 original size:261 final size:261
Alignment explanation
Indices: 70156518--70157368 Score: 1054
Period size: 261 Copynumber: 3.2 Consensus size: 261
70156508 ATAGAAGAAA
* *
70156518 GCAAGCCTTAACCTCCTAAATAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAAT
1 GCAA-CCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAAT
* *
70156583 AGTAGTGGAGCAGATCGAAGAAAGCGAGCCTTAACCCCCTAAGTAGTAAGGTAACAGGCTGAAGA
65 AGTAGTGGAGAAGATCGAAG-AAGCGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGA
* * * ** *
70156648 TTTCAGATCTTGTCTCCCTAAATAGTAGTGGAGCAGATCGAAAAAGCAAGCCTTAATTCCCAAAG
129 TTACAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCCCCTAAG
*
70156713 TAGTAGGGTAACAAGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTACAGTGGAACAGATCAAA
194 TAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAGTTACAGTGGAACAGATCAAA
70156778 GACG
258 GACG
*
70156782 GCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAAATCTTGTCTCCCTAAAT
1 GCAA-CCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAAT
* * * * *
70156847 AGTAGTGGAGAAAATCGAAGAAGCAAGCTTTAACCCCCTAAGTAGTAGGGTAACAGGTTAAAGAT
65 AGTAGTGGAGAAGATCGAAGAAGCGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGAT
*
70156912 TACAGATC-T-TATCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCCCCTAAGT
130 TACAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCCCCTAAGT
* * * *
70156975 AGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTGGAATAGATTAAAG
195 AGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAGTTACAGTGGAACAGATCAAAG
70157040 ACG
259 ACG
* * * *
70157043 GCGAACCTTAACCCCCTAAGTAGTAGGGTAATAGTCTGAAGATTGCAGATCTTGTCTCCCTGAAG
1 GC-AACCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCT-AAA
* * *
70157108 TTGTAGTGGA-ACAGATCAAAGACGACGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAA
64 TAGTAGTGGAGA-AGATCGAAGAAG-CGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAA
** * * *
70157172 GATTGTAGATCTTGTCTCCCTAAACAATAGTGGACCAAATCGAAGAAGCAAGCCTTAACCCCTTA
127 GATTACAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAA---C---
* * * *
70157237 ACCCCTTAAGTAGTAGGGTAACAGGCTAAAGATTACAGA-----TCTCCCTAAG-CAGTAGTGGA
186 -CCCC-TAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAGTTA-CAGTGGA
*
70157296 GCAGATCAAAGACG
248 ACAGATCAAAGACG
* * * * * * *
70157310 GTGAACCTTAACCCCCTAAGCAGTAAGGTAACAGACTGAAGATAGCAGATCTTATCTCC
1 G-CAACCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCC
70157369 TTGAAGTTGC
Statistics
Matches: 513, Mismatches: 58, Indels: 29
0.86 0.10 0.05
Matches are distributed among these distances:
261 165 0.32
262 23 0.04
263 91 0.18
264 81 0.16
265 40 0.08
267 71 0.14
268 8 0.02
272 4 0.01
273 30 0.06
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (261 bp):
GCAACCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAATA
GTAGTGGAGAAGATCGAAGAAGCGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
ACAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCCCCTAAGTA
GTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAGTTACAGTGGAACAGATCAAAGAC
G
Found at i:70157119 original size:350 final size:348
Alignment explanation
Indices: 70156486--70157391 Score: 1169
Period size: 350 Copynumber: 2.6 Consensus size: 348
70156476 ACAAATCTTA
* * * * * * *
70156486 TCCCTAAACATTAGTGGAGTAGATAGAAGAAAGCAAGCCTTAACCTCCTAAATAGTAGGGTAACA
1 TCCCTAAACAATAGTGGAGAAAATCGAAG-AAGCAAGCTTTAACCCCCTAAGTAGTAGGGTAACA
* ** * *
70156551 GGCTGAAGATTGTAGATCTTGTCTCCCTAAATAGTAGTGGAGCAGATCGAAGAAAGCGAGCCTTA
65 GGCTAAAGATTACAGATC-T-T-TCCCTAAACAGTAGTGGAGCAGATCGAAG-AAGCAAGCCTTA
* * *
70156616 ACCCCCTAAGTAGTAAGGTAACAGGCTGAAGATTTCAGATCTTGTCTCCCTAAA-TAGTAGTGGA
126 ACCCCCTAAGTAGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTGGA
* **
70156680 GCAGATCGAAAAAGCAAGCCTTAATTCCCAAAGTAGTAGGGTAACAAGCTGAAGATTGCAGATCT
191 ACAGATCGAAAAAGCAAGCCTTAACCCCCAAAGTAGTAGGGTAACAAGCTGAAGATTGCAGATCT
*
70156745 TGTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCCTAAGTAGTAGGG
256 TGTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGACAAGCCTTAACCCCCTAAGTAGTAGGG
70156810 TAACAGGCTGAAGATTGTAAATCTTGTC
321 TAACAGGCTGAAGATTGTAAATCTTGTC
* *
70156838 TCCCTAAATAGTAGTGGAGAAAATCGAAGAAGCAAGCTTTAACCCCCTAAGTAGTAGGGTAACAG
1 TCCCTAAACAATAGTGGAGAAAATCGAAGAAGCAAGCTTTAACCCCCTAAGTAGTAGGGTAACAG
*
70156903 GTTAAAGATTACAGATCTTATCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCC
66 GCTAAAGATTACAGATCTT-TCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCC
*
70156968 CCTAAGTAGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTGGAATAG
130 CCTAAGTAGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTGGAACAG
* * * *
70157033 AT-TAAAGACGGCGAA-CCTTAACCCCCTAAGTAGTAGGGTAA-TAGTCTGAAGATTGCAGATCT
195 ATCGAAA-A-AGC-AAGCCTTAACCCCCAAAGTAGTAGGGTAACAAG-CTGAAGATTGCAGATCT
** *
70157095 TGTCTCCCTGAAGTTGTAGTGGAACAGATCAAAGACGACGAGCCTTAACCCCCTAAGTAGTAGGG
256 TGTCTCCCTGAAGTTACAGTGGAACAGATCAAAGACGACAAGCCTTAACCCCCTAAGTAGTAGGG
*
70157160 TAACAGGCTGAAGATTGTAGATCTTGTC
321 TAACAGGCTGAAGATTGTAAATCTTGTC
** *
70157188 TCCCTAAACAATAGTGGACCAAATCGAAGAAGCAAGCCTTAACCCCTTAACCCCTTAAGTAGTAG
1 TCCCTAAACAATAGTGGAGAAAATCGAAGAAGCAAG-C-T------TTAACCCCCTAAGTAGTAG
* * * *
70157253 GGTAACAGGCTAAAGATTACAGATC--TCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAA-
58 GGTAACAGGCTAAAGATTACAGATCTTTCCCTAAACAGTAGTGGAGCAGATCGAAGA-AG-CAAG
* * * * * *
70157315 CCTTAACCCCCTAAGCAGTAAGGTAACAGACTGAAGATAGCAGATCTTATCTCCTTGAAGTTGCA
121 CCTTAACCCCCTAAGTAGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCA
* *
70157380 ATGGAGCAGATC
186 GTGGAACAGATC
70157392 AAGCTATAAT
Statistics
Matches: 488, Mismatches: 50, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
348 67 0.14
349 44 0.09
350 163 0.33
351 49 0.10
352 25 0.05
355 28 0.06
356 68 0.14
357 2 0.00
358 42 0.09
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (348 bp):
TCCCTAAACAATAGTGGAGAAAATCGAAGAAGCAAGCTTTAACCCCCTAAGTAGTAGGGTAACAG
GCTAAAGATTACAGATCTTTCCCTAAACAGTAGTGGAGCAGATCGAAGAAGCAAGCCTTAACCCC
CTAAGTAGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTGGAACAGA
TCGAAAAAGCAAGCCTTAACCCCCAAAGTAGTAGGGTAACAAGCTGAAGATTGCAGATCTTGTCT
CCCTGAAGTTACAGTGGAACAGATCAAAGACGACAAGCCTTAACCCCCTAAGTAGTAGGGTAACA
GGCTGAAGATTGTAAATCTTGTC
Found at i:70157193 original size:44 final size:44
Alignment explanation
Indices: 70156532--70157194 Score: 187
Period size: 44 Copynumber: 15.1 Consensus size: 44
70156522 GCCTTAACCT
* *
70156532 CCTAAATAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
* * * ** * ** *
70156576 CCTAAATAGTAGTGG-AGCA-GATCGAAGAAAGC-GAGCCTTAACCC
1 CCTAAGTAGTAG-GGTAACAGGCT-GAAGATTGCAGA-TCTTGTCTC
* *
70156620 CCTAAGTAGTAAGGTAACAGGCTGAAGATTTCAGATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
* * * ** * *
70156664 CCTAAATAGTAGTGG-AGCA-GATCGAA-AAAGCA-AGCCTTAAT-TC
1 CCTAAGTAGTAG-GGTAACAGGCT-GAAGATTGCAGA-TCTT-GTCTC
* *
70156707 CCAAAGTAGTAGGGTAACAAGCTGAAGATTGCAGATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
* * * ** * ** *
70156751 CCTGAAGTTA-CAGTGG-AACA-GATCAAAGACGGCA-AGCCTTAACCC
1 CCT-AAG-TAGTAG-GGTAACAGGCT-GAAGATTGCAGA-TCTTGTCTC
* *
70156796 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAAATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
* * ** * * *
70156840 CCTAAATAGTAGTGG-AGAAAATC-GAAGA-AGCA-AGCTT-TAACCC
1 CCTAAGTAGTAG-GGTA-ACAGGCTGAAGATTGCAGATCTTGT--CTC
* * * *
70156883 CCTAAGTAGTAGGGTAACAGGTTAAAGATTACAGATC-T-TATC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
** * * * * ** *
70156925 CCTAAACAGTAGTGG-AGCA-GATCGAAGA-AGCA-AGCCTTAACCC
1 CCTAAGTAGTAG-GGTAACAGGCT-GAAGATTGCAGA-TCTTGTCTC
*
70156968 CCTAAGTAGTAAGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
* * * ** * ** * ** *
70157012 CCTAAAGTTGCAGTGG-AATAGATTAAAGACGGC-GAACCTTAACCC
1 CCT-AAGTAGTAG-GGTAACAGGCTGAAGATTGCAG-ATCTTGTCTC
* *
70157057 CCTAAGTAGTAGGGTAATAGTCTGAAGATTGCAGATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
* * * * * ** *
70157101 CCTGAAGTTGTAGTGG-AACA-GATCAAAGA-CG-ACGAGCCTTAACCC
1 CCT-AAGTAGTAG-GGTAACAGGCT-GAAGATTGCA-GA-TCTTGTCTC
*
70157146 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTC
1 CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
70157190 CCTAA
1 CCTAA
70157195 ACAATAGTGG
Statistics
Matches: 425, Mismatches: 139, Indels: 110
0.63 0.21 0.16
Matches are distributed among these distances:
40 1 0.00
41 6 0.01
42 32 0.08
43 82 0.19
44 196 0.46
45 99 0.23
46 9 0.02
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
CCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTC
Found at i:70160131 original size:35 final size:35
Alignment explanation
Indices: 70160085--70160155 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
70160075 GAAGGCAATG
70160085 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
1 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
70160120 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
1 TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
70160155 T
1 T
70160156 GTGCTGAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (35 bp):
TTCAATGTTTGGAAACTCGAGGAATCATGCCCTAC
Found at i:70166350 original size:130 final size:132
Alignment explanation
Indices: 70165928--70166439 Score: 411
Period size: 131 Copynumber: 3.9 Consensus size: 132
70165918 AGGAAATACG
* * * * * * * * *
70165928 AGTGAAATTTCGAAGGGATCTTCGATTGTTTTGAA-CAAATGAAAAACTGCAACCCAGCACGATA
1 AGTGAAATTTTGAAGGGATATTTGATTATTTT-AAGCAAACGAGAAATTGCAACCCAACACGTTA
* * * * * *
70165992 GGGCTCGATTCTCA--AATCGCCAAACATCAAACATCGCCTTCGTTTTGAAAGG-TTTTTAATAA
65 GGGCACGATTC-CACGAATTGCCAAATATCACACATCACTTTCGTTTT-AAAGGATTTTTAA-AA
70166054 -ACATGA
127 GACAT-A
*** * * * * ** * **
70166060 A-TGAAAACCTAAAGGAATATTCGATTGTTTTGAA-CAAACGAGAAATCACAACCCAGCACAATA
1 AGTGAAATTTTGAAGGGATATTTGATTATTTT-AAGCAAACGAGAAATTGCAACCCAACACGTTA
* *** * * * * *
70166123 GGGCATGATTCC-CGAATTATTAAACA-C-CGAGTATTACCTTCGTTTTAAAGGATTTTTAGAAG
65 GGGCACGATTCCACGAATTGCCAAATATCAC-A-CATCACTTTCGTTTTAAAGGATTTTTAAAAG
* *
70166185 ACCTT
128 ACATA
*
70166190 AGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAATCGAGAAATTGCAACCCAACACGTTAG
1 AGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAG
*
70166255 GGCACGATTCCACGAATTGCCAAATATCACACATCACTTTCG-TTTAAGGGA-TTTTAAAAGACA
66 GGCACGATTCCACGAATTGCCAAATATCACACATCACTTTCGTTTTAAAGGATTTTTAAAAGACA
70166318 TA
131 TA
* * * *
70166320 AGTGAAATTTTGAAGTGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAG
1 AGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAG
* * * * *
70166385 GGCACGATTCCGCGAATTGCCAAATATCAAATC-TCGCATTCGTTTTAAAGAATTT
66 GGCACGATTCCACGAATTGCCAAATATCACA-CATCACTTTCGTTTTAAAGGATTT
70166440 CTGAATGAAT
Statistics
Matches: 304, Mismatches: 62, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
130 120 0.39
131 160 0.53
132 21 0.07
133 2 0.01
134 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (132 bp):
AGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAG
GGCACGATTCCACGAATTGCCAAATATCACACATCACTTTCGTTTTAAAGGATTTTTAAAAGACA
TA
Found at i:70167283 original size:14 final size:14
Alignment explanation
Indices: 70167264--70167294 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
70167254 CAAAGGTAGG
70167264 TATCGATAAATGTA
1 TATCGATAAATGTA
70167278 TATCGATAAATGTA
1 TATCGATAAATGTA
70167292 TAT
1 TAT
70167295 ACGCTTGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (14 bp):
TATCGATAAATGTA
Found at i:70167351 original size:21 final size:20
Alignment explanation
Indices: 70167321--70167360 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
70167311 GATTTAAAAG
* *
70167321 ATATATTATAGGAATTATGTA
1 ATATAATATAAGAA-TATGTA
70167342 ATATAATATAAGAATATGT
1 ATATAATATAAGAATATGT
70167361 TTAAAGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (20 bp):
ATATAATATAAGAATATGTA
Found at i:70169135 original size:19 final size:19
Alignment explanation
Indices: 70169113--70169152 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70169103 ATTATGTGGG
*
70169113 TTTTTACTATTTATTTGTT
1 TTTTTACTATTTATTTATT
* *
70169132 TTTTTATTTTTTATTTATT
1 TTTTTACTATTTATTTATT
70169151 TT
1 TT
70169153 GTACTTTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.80
Consensus pattern (19 bp):
TTTTTACTATTTATTTATT
Found at i:70169670 original size:132 final size:132
Alignment explanation
Indices: 70169499--70169929 Score: 702
Period size: 132 Copynumber: 3.3 Consensus size: 132
70169489 GGTGGCTTAA
* * *
70169499 ATCTGCTTCACTGCGACTTCAGGAAAACAGGATCTAAAATTTCAGCCTACTCC-TCTACAACTTT
1 ATCTGCTTCACTGCAACTTCAGGGAAACAGGATCTAAAATTTTAGCCTACTCCAT-TACAACTTT
* *
70169563 AGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAAGAAGCCAAGATCCACCGTCT
65 AGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCT
70169628 TCG
130 TCG
* **
70169631 ATCTGCTTCACTGCAACTTTAGGGAAACAATATCTAAAATTTTAGCCTACTCCATTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAGGGAAACAGGATCTAAAATTTTAGCCTACTCCATTACAACTTTA
* * * *
70169696 GAGAGCTAGGTTGATGGCTTAAATCTGCTTTACTGTAACTTCAGGAAGCCAAGATTCACCGTCTT
66 GGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTT
*
70169761 GG
131 CG
70169763 ATCTGCTTCACTGCAACTTCAGGGAAACAGGATCTAAAATTTTAGCCTACTCCATTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAGGGAAACAGGATCTAAAATTTTAGCCTACTCCATTACAACTTTA
**
70169828 GGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTT
66 GGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTT
70169893 CG
131 CG
*
70169895 ATCTGCTTCATTGCAACTTCAGGGAAACAGGATCT
1 ATCTGCTTCACTGCAACTTCAGGGAAACAGGATCT
70169930 GTAGGATTCA
Statistics
Matches: 274, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 273 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
ATCTGCTTCACTGCAACTTCAGGGAAACAGGATCTAAAATTTTAGCCTACTCCATTACAACTTTA
GGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTT
CG
Found at i:70181628 original size:131 final size:132
Alignment explanation
Indices: 70181380--70181827 Score: 290
Period size: 131 Copynumber: 3.4 Consensus size: 132
70181370 CGAAGGGATC
* * * *
70181380 TTCGATTGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGC-TCGATT-CTCAAATCG
1 TTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCAT-GATTCCTCAAATCA
* * *
70181443 CCAAACATCGAACATCGCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGA
65 CCAAACACCGAACATCACCTTCATTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGA
70181508 ATA
130 ATA
* * * *
70181511 TTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCT-GAATTAT
1 TTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCCTCAAATCAC
* ** * * * * *** *
70181575 TAAACACCGAGTATTACCTTCATTTT-AAAGGATTTTTAGA-AGACCTGAGTGAAATTTTGAAGG
66 CAAACACCGAACATCACCTTCATTTTGAAAGG-TTTTTA-ATAAACATGAATGAAAACCTAAAGG
*
70181638 GATA
129 AATA
* * * * * * * * * **
70181642 TTTGATTATTTT-AAGCAATCGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTG
1 TTCGATTGTTTTGAA-CAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCCTCAAATCA
* * * * * * *** *
70181706 CAAAATATC-ACACATCACCTTC-GTTT-AAGGGATTTTAA-AAGACAT-AAGTGAAATTTTGAA
65 CCAAACACCGA-ACATCACCTTCATTTTGAAAGGTTTTTAATAA-ACATGAA-TGAAAACCTAAA
70181766 GTG-ATA
127 G-GAATA
* * * * * *
70181772 TTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCC
1 TTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCC
70181828 GTGAATTGCC
Statistics
Matches: 255, Mismatches: 51, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
129 3 0.01
130 80 0.31
131 150 0.59
132 22 0.09
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (132 bp):
TTCGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCCTCAAATCAC
CAAACACCGAACATCACCTTCATTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAA
TA
Found at i:70181783 original size:130 final size:131
Alignment explanation
Indices: 70181598--70181845 Score: 372
Period size: 130 Copynumber: 1.9 Consensus size: 131
70181588 TTACCTTCAT
* * * * *
70181598 TTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAATCG
1 TTTAAAGGATTTTTAAAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACG
70181663 AGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCAAAATATCACACATCACCTTC
66 AGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCAAAATATCACACATCACCTTC
70181728 G
131 G
* * *
70181729 TTTAAGGGA-TTTTAAAAGACATAAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAACG
1 TTTAAAGGATTTTTAAAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACG
* * ** *
70181793 CGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGTGAATTGCCAAATATCA
66 AGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCAAAATATCA
70181846 AATCTCGCAT
Statistics
Matches: 104, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
130 96 0.92
131 8 0.08
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (131 bp):
TTTAAAGGATTTTTAAAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACG
AGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCAAAATATCACACATCACCTTC
G
Found at i:70182772 original size:21 final size:20
Alignment explanation
Indices: 70182742--70182781 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
70182732 GATTTAAAAG
*
70182742 ATATATTATAAGAATTATGTA
1 ATATAATATAAGAA-TATGTA
70182763 ATATAATATAAGAATATGT
1 ATATAATATAAGAATATGT
70182782 TTAAAGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (20 bp):
ATATAATATAAGAATATGTA
Found at i:70184546 original size:18 final size:18
Alignment explanation
Indices: 70184523--70184566 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
70184513 ATTATGTGGG
*
70184523 TTTTTACTATTTATTTGT
1 TTTTTACTATTTATTTAT
* *
70184541 TTTTTATTTTTTATTTAT
1 TTTTTACTATTTATTTAT
*
70184559 TTTGTACT
1 TTTTTACT
70184567 TTTGCTCTTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75
Consensus pattern (18 bp):
TTTTTACTATTTATTTAT
Found at i:70189628 original size:16 final size:16
Alignment explanation
Indices: 70189599--70189632 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
70189589 AGAATCTCAA
70189599 TTAACTATTTTAATTT
1 TTAACTATTTTAATTT
70189615 TTAA-TATTTATAATTT
1 TTAACTATTT-TAATTT
70189631 TT
1 TT
70189633 GAAGTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAACTATTTTAATTT
Found at i:70192170 original size:16 final size:16
Alignment explanation
Indices: 70192151--70192190 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
70192141 TTCCAAATTA
*
70192151 AATTTTATATATTCAT
1 AATTTTATATATGCAT
*
70192167 AATTTTATATGTGCAT
1 AATTTTATATATGCAT
*
70192183 TATTTTAT
1 AATTTTAT
70192191 TTAAAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (16 bp):
AATTTTATATATGCAT
Found at i:70197427 original size:29 final size:29
Alignment explanation
Indices: 70197395--70197453 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
70197385 AATTATAAAT
* * *
70197395 TTTTGAGATATTAAAATATAATTTTATTA
1 TTTTGAAAGATTAAAATATAATTTAATTA
*
70197424 TTTTGAAAGGTTAAAATATAATTTAATTA
1 TTTTGAAAGATTAAAATATAATTTAATTA
70197453 T
1 T
70197454 ATATTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.49
Consensus pattern (29 bp):
TTTTGAAAGATTAAAATATAATTTAATTA
Found at i:70197460 original size:23 final size:23
Alignment explanation
Indices: 70197434--70197483 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
70197424 TTTTGAAAGG
70197434 TTAAAATATAATTTAATTATAT-A
1 TTAAAATATAATTTAATTA-ATCA
**
70197457 TTAATTTATAATTTAATTAATCA
1 TTAAAATATAATTTAATTAATCA
70197480 TTAA
1 TTAA
70197484 GTGATTGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAAAATATAATTTAATTAATCA
Found at i:70201159 original size:20 final size:20
Alignment explanation
Indices: 70201134--70201183 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
70201124 TGGCTTAAAA
70201134 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
70201154 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
70201171 GTGGTAGTGGATT
1 TTGGTAGTGGATT
70201184 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:70205798 original size:20 final size:20
Alignment explanation
Indices: 70205773--70205822 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
70205763 TGGCTTAAAA
70205773 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
70205793 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
70205810 GTGGTAGTGGATT
1 TTGGTAGTGGATT
70205823 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:70217317 original size:13 final size:11
Alignment explanation
Indices: 70217281--70217311 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
70217271 CAGCCTGTAT
70217281 TAATTTTTATA
1 TAATTTTTATA
*
70217292 TTATTTTTATA
1 TAATTTTTATA
70217303 TAATTTTTA
1 TAATTTTTA
70217312 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:70217470 original size:30 final size:30
Alignment explanation
Indices: 70217436--70217499 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 30
70217426 ACTTAACAAG
70217436 CAAATGCATCT-AAAATAATAACAAAATTAA
1 CAAATGCAT-TGAAAATAATAACAAAATTAA
*
70217466 CAAATGCCTTGAAAATAATAACAAAATTAA
1 CAAATGCATTGAAAATAATAACAAAATTAA
70217496 CAAA
1 CAAA
70217500 AAAATAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.59, C:0.14, G:0.05, T:0.22
Consensus pattern (30 bp):
CAAATGCATTGAAAATAATAACAAAATTAA
Found at i:70217553 original size:22 final size:22
Alignment explanation
Indices: 70217528--70217570 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
70217518 TATCCAAACA
70217528 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* *
70217550 ATAATAGTAAAATGGTAGCAA
1 ATAATAATAAAATAGTAGCAA
70217571 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:70219194 original size:31 final size:32
Alignment explanation
Indices: 70219121--70219196 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
70219111 TTAATATACT
*
70219121 ATTTAGTATTTGA-ATTTAGTTTCGATACTCA
1 ATTTAGTATTTGAGATTTAGTTTCAATACTCA
* ** * *
70219152 AATTAAAATTTGAGATTT-GTTTCAATATTTA
1 ATTTAGTATTTGAGATTTAGTTTCAATACTCA
70219183 ATTTAGTATTTGAG
1 ATTTAGTATTTGAG
70219197 TTTTTTTAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (32 bp):
ATTTAGTATTTGAGATTTAGTTTCAATACTCA
Found at i:70219493 original size:60 final size:60
Alignment explanation
Indices: 70219382--70219495 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
70219372 ATAAGTACTT
* *
70219382 TAATTGGAACTAGAAAAAACTTAAATACCAAATTGAACATCAAAGCTAAACTCAGGTGCC
1 TAATTGGAACTAAAAAAAACTTAAATACCAAATTGAACATCAAAGCCAAACTCAGGTGCC
* * **
70219442 TAATTGGAA-TAAAAGAAAACTTAAATACCAATTTGAATATTGAAGCCAAACTCA
1 TAATTGGAACTAAAA-AAAACTTAAATACCAAATTGAACATCAAAGCCAAACTCA
70219496 TGTATTAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 4 0.09
60 43 0.91
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (60 bp):
TAATTGGAACTAAAAAAAACTTAAATACCAAATTGAACATCAAAGCCAAACTCAGGTGCC
Found at i:70219507 original size:60 final size:59
Alignment explanation
Indices: 70219382--70219518 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 59
70219372 ATAAGTACTT
* * *
70219382 TAATTGGAACTAGAAAAAACTTAAATACCAAATTGAACATCAAAGCTAAACTCAGGTGCC
1 TAATTGGAA-TAAAAAAAACTTAAATACCAAATTGAACATCAAAGCCAAACTCAGGTGAC
* * ** * *
70219442 TAATTGGAATAAAAGAAAACTTAAATACCAATTTGAATATTGAAGCCAAACTCATGT-AT
1 TAATTGGAATAAAA-AAAACTTAAATACCAAATTGAACATCAAAGCCAAACTCAGGTGAC
*
70219501 TAAATTGGAACAAAAAAA
1 T-AATTGGAATAAAAAAA
70219519 TCAAGTGTCA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
59 8 0.12
60 57 0.88
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (59 bp):
TAATTGGAATAAAAAAAACTTAAATACCAAATTGAACATCAAAGCCAAACTCAGGTGAC
Found at i:70225433 original size:16 final size:17
Alignment explanation
Indices: 70225414--70225451 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
70225404 CAATTATAAA
*
70225414 AAATAA-GATAAATTAT
1 AAATAAGGATAAAGTAT
*
70225430 AAATAAGGTTAAAGTAT
1 AAATAAGGATAAAGTAT
70225447 AAATA
1 AAATA
70225452 TTAAAAACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (17 bp):
AAATAAGGATAAAGTAT
Found at i:70227950 original size:286 final size:286
Alignment explanation
Indices: 70227427--70227987 Score: 883
Period size: 286 Copynumber: 2.0 Consensus size: 286
70227417 CCCCTAACTA
*
70227427 GTATCTATCACCGGACTAGGGTTAAAGGTGTTACCAGACAAATCAGAACATTTTACGAACAATTC
1 GTATCTATCACCGGACTAGGGTTAAAGGCGTTACCAGACAAATCAGAACATTTTACGAACAATTC
* * *
70227492 ATATACTTCATGAGCAATCATATTCAAACATTACCATAGAGTCCCTAAAATAGGTCATTAAGACC
66 ATATACTTCATCAACAATCATATTCAAACACTACCATAGAGTCCCTAAAATAGGTCATTAAGACC
* * ** * *
70227557 TTAAACATGTATTAAAAATGGGTTAGGACTAAACCATGTTCATACAAAATTTTTCAAAGCTTAAA
131 TTAAACATGCATTAAAAAGGGGCCAGGACTAAACCATGCTCATACAAAATTTTTCAAAACTTAAA
*
70227622 CACTTTTCAAAGTTGTACAGGTCACAGACCCGTGTAAACAGGCCGTGTGCCTCACACGACTTTAG
196 CACTTTTCAAAGTTGTACAGGTCACAGACCCGTGTAAACAGGCCATGTGCCTCACACGACTTTAG
*
70227687 ACACGCCCGTGTGTCACCCTAAACCC
261 ACACGCCCATGTGTCACCCTAAACCC
* * *
70227713 GTATCTGTCATCGGACTAGGGTTAAAGGCGTTACCAGACAAATCAGAATATTTTACGAACAATTC
1 GTATCTATCACCGGACTAGGGTTAAAGGCGTTACCAGACAAATCAGAACATTTTACGAACAATTC
*
70227778 ATATACTTCATCAACAATCATATTCAAACACTACCATAGAGTCCGTAAAATAGGTCATTAAGACC
66 ATATACTTCATCAACAATCATATTCAAACACTACCATAGAGTCCCTAAAATAGGTCATTAAGACC
* * *
70227843 TTAAACATGCATTAAAAAGGGGCCGGGACTAATCTGA-GCTCATACAAAATTTTTCAAAACTTAA
131 TTAAACATGCATTAAAAAGGGGCCAGGACTAAAC-CATGCTCATACAAAATTTTTCAAAACTTAA
* * * *
70227907 ACATTTTTCAAAGTTGTACAGGTCACACG-CTCGTGTGAACAGGCCATGTGCCTTACACGACTTT
195 ACACTTTTCAAAGTTGTACAGGTCACA-GACCCGTGTAAACAGGCCATGTGCCTCACACGACTTT
70227971 AGACACGCCCATGTGTC
259 AGACACGCCCATGTGTC
70227988 TAGGCCGTGT
Statistics
Matches: 250, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
286 248 0.99
287 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (286 bp):
GTATCTATCACCGGACTAGGGTTAAAGGCGTTACCAGACAAATCAGAACATTTTACGAACAATTC
ATATACTTCATCAACAATCATATTCAAACACTACCATAGAGTCCCTAAAATAGGTCATTAAGACC
TTAAACATGCATTAAAAAGGGGCCAGGACTAAACCATGCTCATACAAAATTTTTCAAAACTTAAA
CACTTTTCAAAGTTGTACAGGTCACAGACCCGTGTAAACAGGCCATGTGCCTCACACGACTTTAG
ACACGCCCATGTGTCACCCTAAACCC
Found at i:70229943 original size:46 final size:46
Alignment explanation
Indices: 70229848--70229966 Score: 123
Period size: 46 Copynumber: 2.5 Consensus size: 46
70229838 CTCGTAGCCG
* * * * *
70229848 ATGCATGTCCTCGACATGTCTTACGCTGGCTTACGTCACGAGGCTA
1 ATGCATGTCCTAGACATGTCTTACACTAGCTTACGTCACAAGGCCA
** *
70229894 ATGCATGTCCTAGACATGTCTTACACTAGCTCT-CGTTTCAATGCCA
1 ATGCATGTCCTAGACATGTCTTACACTAGCT-TACGTCACAAGGCCA
*
70229940 ATGCTATGTCCCAGACATGGTCTTACA
1 ATGC-ATGTCCTAGACAT-GTCTTACA
70229967 ATGACTCTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
46 40 0.66
47 13 0.21
48 8 0.13
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCTTACGTCACAAGGCCA
Found at i:70232822 original size:47 final size:47
Alignment explanation
Indices: 70232754--70232888 Score: 166
Period size: 47 Copynumber: 2.9 Consensus size: 47
70232744 GCTACATTAT
* *
70232754 GAGAGCCATTGTAAGACCATGTCTGGGATATAGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGAC
* ** *
70232802 GAGAGCTAGTGTAAGA-CATGTCTGGGACATGACATCTAC-TTGAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCATTGAGAC
*
70232848 GTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
70232889 CTTTACCCAT
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
46 21 0.29
47 37 0.51
48 15 0.21
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGAC
Found at i:70232872 original size:94 final size:94
Alignment explanation
Indices: 70232711--70232888 Score: 241
Period size: 94 Copynumber: 1.9 Consensus size: 94
70232701 TTTGTGTGTA
* * *
70232711 AGCTAGTATAAGACATGTCTGAGACATGAATCGGCTACATTATGAGAGCCATTGTAAGACCATGT
1 AGCTAGTATAAGACATGTCTGAGACATGAATCGACTACATGATGAGAGCCAGTGTAAGACCATGT
*
70232776 CTGGGATATAGCATCGGCATTGAGACGAG
66 CTGGGACATAGCATCGGCATTGAGACGAG
* * * ** *
70232805 AGCTAGTGTAAGACATGTCTGGGACATGACATCTACTTGA-GATGTGAGCCAGTGTAAGACCATG
1 AGCTAGTATAAGACATGTCTGAGACATGA-ATCGACTACATGATGAGAGCCAGTGTAAGACCATG
*
70232869 TCTGGGACATGGCATCGGCA
65 TCTGGGACATAGCATCGGCA
70232889 CTTTACCCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
94 66 0.92
95 6 0.08
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
AGCTAGTATAAGACATGTCTGAGACATGAATCGACTACATGATGAGAGCCAGTGTAAGACCATGT
CTGGGACATAGCATCGGCATTGAGACGAG
Found at i:70241493 original size:47 final size:47
Alignment explanation
Indices: 70241424--70241675 Score: 477
Period size: 47 Copynumber: 5.4 Consensus size: 47
70241414 GAAATGTTAG
*
70241424 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241471 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70241518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241565 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241612 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241659 TAAGGCCTAATAGCCGA
1 TAAGGCCTAATAGCCGA
70241676 AAGTGTATAT
Statistics
Matches: 200, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 200 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70241683 original size:33 final size:33
Alignment explanation
Indices: 70241641--70241708 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
70241631 TGATGAATGT
70241641 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
70241674 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
70241707 GA
1 GA
70241709 TGTGATGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (33 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCC
Found at i:70241690 original size:80 final size:80
Alignment explanation
Indices: 70241594--70241755 Score: 324
Period size: 80 Copynumber: 2.0 Consensus size: 80
70241584 TGATGAATGT
70241594 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241659 TAAGGCCTAATAGCC
66 TAAGGCCTAATAGCC
70241674 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241739 TAAGGCCTAATAGCC
66 TAAGGCCTAATAGCC
70241754 GA
1 GA
70241756 TGTGATGAAT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (80 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCC
Found at i:70241694 original size:127 final size:127
Alignment explanation
Indices: 70241547--70241802 Score: 494
Period size: 127 Copynumber: 2.0 Consensus size: 127
70241537 TGATGAATGT
*
70241547 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241612 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
70241674 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70241739 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
70241801 GA
1 GA
70241803 TGTGATGAAT
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (127 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
Found at i:70241727 original size:47 final size:47
Alignment explanation
Indices: 70241674--70241883 Score: 321
Period size: 47 Copynumber: 4.5 Consensus size: 47
70241664 CCTAATAGCC
70241674 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
70241721 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
70241768 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * *
70241815 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
70241862 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
70241884 TCCCGAAGGG
Statistics
Matches: 151, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 151 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:70241790 original size:174 final size:174
Alignment explanation
Indices: 70241500--70241832 Score: 639
Period size: 174 Copynumber: 1.9 Consensus size: 174
70241490 TGATGAATGT
* *
70241500 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70241565 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
70241630 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
131 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
70241674 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70241739 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
70241804 GTGATGAATGTGAAAGTGTATATATGTGA
131 GTGATGAATGTGAAAGTGTATATATGTGA
70241833 CAGGGCCGAG
Statistics
Matches: 156, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 156 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (174 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
Found at i:70241864 original size:221 final size:221
Alignment explanation
Indices: 70241453--70241883 Score: 745
Period size: 221 Copynumber: 2.0 Consensus size: 221
70241443 TGATGAATGT
70241453 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70241518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* * * *
70241583 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
131 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
* *
70241648 TATATATGTGATAAGGCCTAATAGCC
196 CATAAATGTGATAAGGCCTAATAGCC
70241674 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70241739 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* * * *
70241804 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
131 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
70241869 CATAAATGTGATAAG
196 CATAAATGTGATAAG
70241884 TCCCGAAGGG
Statistics
Matches: 197, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
221 197 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (221 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
CATAAATGTGATAAGGCCTAATAGCC
Found at i:70242058 original size:37 final size:37
Alignment explanation
Indices: 70242002--70242080 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
70241992 CCGAGCTCTA
* *
70242002 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
70242039 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70242076 AAGAC
1 AAGAC
70242081 TTCATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70243995 original size:43 final size:43
Alignment explanation
Indices: 70243947--70244048 Score: 204
Period size: 43 Copynumber: 2.4 Consensus size: 43
70243937 TGGTTTTCAA
70243947 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGG
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGG
70243990 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGG
1 CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGG
70244033 CACTAAGTGTGCGGGC
1 CACTAAGTGTGCGGGC
70244049 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
CACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGG
Found at i:70244065 original size:29 final size:29
Alignment explanation
Indices: 70244030--70244103 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
70244020 GTTGTGAGAT
* *
70244030 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
70244059 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
70244088 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70244104 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:70244537 original size:40 final size:40
Alignment explanation
Indices: 70244493--70244689 Score: 297
Period size: 40 Copynumber: 4.9 Consensus size: 40
70244483 GAGTTACTAA
70244493 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
70244533 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
70244573 ATCCGGGCTAAGTCCCGAAGAGCATTCATACTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
70244613 ATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
70244653 ATCCGTGCTAAATCCCGAAGAGCAATT-ATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGC-ATTCATGCTAGTGA
70244690 CGTGTATTCG
Statistics
Matches: 142, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 139 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:70244551 original size:80 final size:79
Alignment explanation
Indices: 70244414--70244689 Score: 308
Period size: 80 Copynumber: 3.5 Consensus size: 79
70244404 TCGAATGATG
** ** *
70244414 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCGAAGAGCA
* * * *
70244476 TTGGTGCGAGTTACTAAA
63 TTCGTGCTAGTGA-TATA
70244494 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATT
* * *
70244559 CATGCTAGCGATGTA
65 CGTGCTAGTGATATA
* *
70244574 TCCGGGCTAAGTCCCGAAGAGCATTCATACTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATT
70244639 CGTGCTAGTGATATA
65 CGTGCTAGTGATATA
* * *
70244654 TCCGTGCTAAATCCCGAAGAGCAATT-ATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGC-ATTCATGCTAGTGA
70244690 CGTGTATTCG
Statistics
Matches: 169, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 140 0.83
81 22 0.13
82 6 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
GTGCTAGTGATATA
Found at i:70248447 original size:47 final size:47
Alignment explanation
Indices: 70248381--70248632 Score: 468
Period size: 47 Copynumber: 5.4 Consensus size: 47
70248371 GAAATGATAG
*
70248381 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70248428 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70248475 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70248522 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70248569 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70248616 TAAGGCCTAATAGCCGA
1 TAAGGCCTAATAGCCGA
70248633 AAGTGTATAT
Statistics
Matches: 200, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 200 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Done.