Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 210 of 320
Found at i:70248640 original size:33 final size:33
Alignment explanation
Indices: 70248598--70248665 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
70248588 TGATGAATGT
70248598 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
70248631 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCC
70248664 GA
1 GA
70248666 TGTGATGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (33 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCC
Found at i:70248648 original size:80 final size:80
Alignment explanation
Indices: 70248551--70248712 Score: 315
Period size: 80 Copynumber: 2.0 Consensus size: 80
70248541 TGATGAATGT
*
70248551 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70248616 TAAGGCCTAATAGCC
66 TAAGGCCTAATAGCC
70248631 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70248696 TAAGGCCTAATAGCC
66 TAAGGCCTAATAGCC
70248711 GA
1 GA
70248713 TGTGATGAAT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (80 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCC
Found at i:70248651 original size:127 final size:127
Alignment explanation
Indices: 70248504--70248759 Score: 485
Period size: 127 Copynumber: 2.0 Consensus size: 127
70248494 TGATGAATGT
* *
70248504 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70248569 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
70248631 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70248696 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
70248758 GA
1 GA
70248760 TGTGATGAAT
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 126 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (127 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
Found at i:70248684 original size:47 final size:47
Alignment explanation
Indices: 70248631--70248840 Score: 321
Period size: 47 Copynumber: 4.5 Consensus size: 47
70248621 CCTAATAGCC
70248631 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
70248678 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
70248725 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * *
70248772 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
70248819 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
70248841 TCCCGAAGGG
Statistics
Matches: 151, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 151 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:70248747 original size:174 final size:174
Alignment explanation
Indices: 70248457--70248789 Score: 630
Period size: 174 Copynumber: 1.9 Consensus size: 174
70248447 TGATGAATGT
* *
70248457 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70248522 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
70248587 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
131 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
70248631 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70248696 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
70248761 GTGATGAATGTGAAAGTGTATATATGTGA
131 GTGATGAATGTGAAAGTGTATATATGTGA
70248790 CAGGGCCGAG
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 155 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (174 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
Found at i:70248821 original size:221 final size:221
Alignment explanation
Indices: 70248410--70248840 Score: 736
Period size: 221 Copynumber: 2.0 Consensus size: 221
70248400 TGATGAATGT
70248410 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70248475 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* * * * *
70248540 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
131 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
* *
70248605 TATATATGTGATAAGGCCTAATAGCC
196 CATAAATGTGATAAGGCCTAATAGCC
70248631 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70248696 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* * * *
70248761 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
131 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
70248826 CATAAATGTGATAAG
196 CATAAATGTGATAAG
70248841 TCCCGAAGGG
Statistics
Matches: 196, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
221 196 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (221 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
CATAAATGTGATAAGGCCTAATAGCC
Found at i:70249015 original size:37 final size:37
Alignment explanation
Indices: 70248959--70249037 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
70248949 CCGAGCTCTA
* * *
70248959 AAGACCCGATGACTACGTGTGG-GAATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
70248996 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70249033 AAGAC
1 AAGAC
70249038 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70251833 original size:50 final size:47
Alignment explanation
Indices: 70251762--70251885 Score: 123
Period size: 50 Copynumber: 2.6 Consensus size: 47
70251752 CGAGGCTGAA
* * * *
70251762 GCCATGTCCTGGACATGGTCTTACACTGGCTCTCATCTC-TCCATGTCGAT
1 GCCATGTCC-CGACATAGTCTTACACTGGCTCACATCTCGT--A-GCCGAT
*
70251812 GCCATGTCCCAGACATAGTCTTACACT-G-ACACATCTCGTAGCCGAT
1 GCCATGTCCC-GACATAGTCTTACACTGGCTCACATCTCGTAGCCGAT
70251858 G-CATGTCCCGACATA-TCTTACACTGGCT
1 GCCATGTCCCGACATAGTCTTACACTGGCT
70251886 TACGTCACGA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
43 9 0.14
44 7 0.11
45 8 0.12
46 6 0.09
47 1 0.02
48 7 0.11
49 2 0.03
50 24 0.38
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCGACATAGTCTTACACTGGCTCACATCTCGTAGCCGAT
Found at i:70254095 original size:42 final size:44
Alignment explanation
Indices: 70254039--70254166 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 44
70254029 GTCTAATTGT
70254039 AATCAAATATCGATGCC-AC-TGCCCCAGACAGGGTCTTACACG-A
1 AATCAAATATCGATGCCAACAT--CCCAGACAGGGTCTTACACGTA
* *
70254082 AATCAAATA-CGATGCCAACATCTCAGACATGGTCTTACACGTA
1 AATCAAATATCGATGCCAACATCCCAGACAGGGTCTTACACGTA
* * * *
70254125 AATCATAA-GTCAATGCCAACGTCCTAGAC-GTGGTCTTACACG
1 AATCA-AATATCGATGCCAACATCCCAGACAG-GGTCTTACACG
70254167 ATAACACATA
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
42 25 0.35
43 17 0.24
44 29 0.41
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (44 bp):
AATCAAATATCGATGCCAACATCCCAGACAGGGTCTTACACGTA
Found at i:70255877 original size:8 final size:8
Alignment explanation
Indices: 70255864--70257246 Score: 1597
Period size: 8 Copynumber: 171.4 Consensus size: 8
70255854 TTTGAGGAGT
*
70255864 TGTATGTA
1 TGTATGTG
*
70255872 TGTATGTA
1 TGTATGTG
*
70255880 TGTATGTA
1 TGTATGTG
*
70255888 TGTATGTA
1 TGTATGTG
*
70255896 TGTATGTA
1 TGTATGTG
*
70255904 TGTATGTA
1 TGTATGTG
* *
70255912 TCTATGTA
1 TGTATGTG
* *
70255920 TGTATATA
1 TGTATGTG
* *
70255928 TGTATATA
1 TGTATGTG
* *
70255936 TGTATATA
1 TGTATGTG
70255944 TGTATGTG
1 TGTATGTG
*
70255952 TGTATGTA
1 TGTATGTG
*
70255960 TGTATGTA
1 TGTATGTG
70255968 TGTATGTG
1 TGTATGTG
70255976 TGTATGTG
1 TGTATGTG
*
70255984 TGTATGTA
1 TGTATGTG
*
70255992 TGTATGTA
1 TGTATGTG
70256000 TGTA--TG
1 TGTATGTG
70256006 TGTATGTG
1 TGTATGTG
70256014 TGTATGTGTG
1 TGTA--TGTG
*
70256024 TGTATGTA
1 TGTATGTG
* *
70256032 TGTGTGTA
1 TGTATGTG
70256040 TGTATGTG
1 TGTATGTG
70256048 TGTATGTGTG
1 TGTA--TGTG
*
70256058 TGTATGTA
1 TGTATGTG
70256066 TGTATGTG
1 TGTATGTG
*
70256074 TGTATGTA
1 TGTATGTG
70256082 TG--TGTG
1 TGTATGTG
* *
70256088 TATGTGTG
1 TGTATGTG
*
70256096 TGTATGTA
1 TGTATGTG
*
70256104 TGTATGTA
1 TGTATGTG
*
70256112 TGTATGTA
1 TGTATGTG
* *
70256120 TATATGTA
1 TGTATGTG
*
70256128 TGCATGTG
1 TGTATGTG
*
70256136 TGTATGTA
1 TGTATGTG
70256144 TGTATGTG
1 TGTATGTG
*
70256152 TGTATGTA
1 TGTATGTG
70256160 TGTATGTG
1 TGTATGTG
*
70256168 TGTATGTA
1 TGTATGTG
70256176 TGTATGTG
1 TGTATGTG
70256184 TATATGTATGTG
1 ----TGTATGTG
*
70256196 TGTATGTA
1 TGTATGTG
70256204 TGTATGTG
1 TGTATGTG
*
70256212 TGTATGTA
1 TGTATGTG
70256220 TGTATGTG
1 TGTATGTG
*
70256228 TGTATGTA
1 TGTATGTG
*
70256236 TGTATGTA
1 TGTATGTG
70256244 TGTATGTG
1 TGTATGTG
*
70256252 TGTATGTA
1 TGTATGTG
*
70256260 TGTATGTA
1 TGTATGTG
*
70256268 TGTATGTA
1 TGTATGTG
70256276 TGTATGTG
1 TGTATGTG
70256284 TGTATGTG
1 TGTATGTG
*
70256292 TGCATGTG
1 TGTATGTG
*
70256300 TGCATGTGTG
1 TG--TATGTG
70256310 CATGTATGTG
1 --TGTATGTG
70256320 TGTATGTG
1 TGTATGTG
70256328 TGTATGTG
1 TGTATGTG
70256336 TGTATGTG
1 TGTATGTG
70256344 TGTATGTG
1 TGTATGTG
*
70256352 TATATGTG
1 TGTATGTG
70256360 TGTATGTG
1 TGTATGTG
70256368 TGTATGTG
1 TGTATGTG
70256376 TGTATGTG
1 TGTATGTG
70256384 TGTATGTG
1 TGTATGTG
70256392 TGTATGTG
1 TGTATGTG
70256400 TGTATGTG
1 TGTATGTG
*
70256408 TGTAGGTG
1 TGTATGTG
70256416 TGTATGTG
1 TGTATGTG
*
70256424 TGTAGGTG
1 TGTATGTG
70256432 TGTATGTG
1 TGTATGTG
*
70256440 TGTAGGTG
1 TGTATGTG
*
70256448 TGTAGGTG
1 TGTATGTG
70256456 TGTATGTG
1 TGTATGTG
70256464 TGTATGTG
1 TGTATGTG
70256472 TGTATGTG
1 TGTATGTG
70256480 TGTATGTG
1 TGTATGTG
70256488 TGTATGTG
1 TGTATGTG
70256496 TGTATGTG
1 TGTATGTG
70256504 TGTATGTG
1 TGTATGTG
70256512 TGTATGTG
1 TGTATGTG
70256520 TGTATGTG
1 TGTATGTG
70256528 TGTATGTG
1 TGTATGTG
70256536 TGTATGTG
1 TGTATGTG
*
70256544 TGTATGTA
1 TGTATGTG
*
70256552 TGTGTGTG
1 TGTATGTG
*
70256560 TGTGTGTG
1 TGTATGTG
70256568 TGTATGTG
1 TGTATGTG
*
70256576 TGTGTGTG
1 TGTATGTG
70256584 TGTATGTG
1 TGTATGTG
70256592 TGTATGTG
1 TGTATGTG
70256600 TGTATGTG
1 TGTATGTG
70256608 TGTATGTG
1 TGTATGTG
70256616 TGTATGTG
1 TGTATGTG
*
70256624 TGTATATG
1 TGTATGTG
70256632 TGTATGTG
1 TGTATGTG
70256640 TGTATGTATG
1 TGTATG--TG
70256650 TGTATGTG
1 TGTATGTG
70256658 TGTA----
1 TGTATGTG
70256662 TGTATGTG
1 TGTATGTG
*
70256670 TGTATGTT
1 TGTATGTG
* *
70256678 TGTGTGTA
1 TGTATGTG
*
70256686 TGTATGTA
1 TGTATGTG
70256694 TGTATGTG
1 TGTATGTG
*
70256702 TGTATGTA
1 TGTATGTG
*
70256710 TGTATATG
1 TGTATGTG
70256718 TGTATGTG
1 TGTATGTG
*
70256726 TGTATGTA
1 TGTATGTG
*
70256734 TGTATGTACATA
1 TGTATG----TG
*
70256746 TGTATGTA
1 TGTATGTG
*
70256754 TGTACGTG
1 TGTATGTG
70256762 TGTATGTG
1 TGTATGTG
70256770 TGTATGTG
1 TGTATGTG
70256778 TGTATGTG
1 TGTATGTG
70256786 TG--TGTG
1 TGTATGTG
70256792 TG--TGTG
1 TGTATGTG
70256798 TGTATGTG
1 TGTATGTG
70256806 TGTATGTG
1 TGTATGTG
70256814 TGTATGTG
1 TGTATGTG
*
70256822 TGCATGTG
1 TGTATGTG
*
70256830 TGCATGTG
1 TGTATGTG
*
70256838 TGCATGTG
1 TGTATGTG
*
70256846 TGCATGTG
1 TGTATGTG
*
70256854 TGCATGTG
1 TGTATGTG
*
70256862 TGCATGTG
1 TGTATGTG
*
70256870 TGCATGTG
1 TGTATGTG
*
70256878 TGCATGTG
1 TGTATGTG
*
70256886 TGCATGTG
1 TGTATGTG
*
70256894 TGCATGTG
1 TGTATGTG
*
70256902 TGCATGTG
1 TGTATGTG
70256910 TGTATGTATG
1 TGTATG--TG
70256920 TATGTATGTG
1 --TGTATGTG
70256930 TGTATGTG
1 TGTATGTG
70256938 TGTATGTG
1 TGTATGTG
70256946 TGTATGTG
1 TGTATGTG
70256954 TGTATGTG
1 TGTATGTG
70256962 TGTATGTG
1 TGTATGTG
70256970 TGTATGTG
1 TGTATGTG
*
70256978 TG--TGTA
1 TGTATGTG
*
70256984 TGTGTGTG
1 TGTATGTG
*
70256992 TATATGTG
1 TGTATGTG
*
70257000 TGTATGTA
1 TGTATGTG
* *
70257008 TGTGTGTA
1 TGTATGTG
*
70257016 TGTATGTA
1 TGTATGTG
*
70257024 TGTATGTA
1 TGTATGTG
*
70257032 TGTATGTA
1 TGTATGTG
70257040 TGTATGTG
1 TGTATGTG
70257048 TGTATGTG
1 TGTATGTG
70257056 TGTATGTATG
1 TGTATG--TG
70257066 TATGTATGTG
1 --TGTATGTG
70257076 TGTATGTG
1 TGTATGTG
* *
70257084 TTTATGTA
1 TGTATGTG
70257092 TGTATGTG
1 TGTATGTG
*
70257100 TGTATGTA
1 TGTATGTG
70257108 TGTATGTG
1 TGTATGTG
70257116 TGTATGTG
1 TGTATGTG
70257124 TGTATGTG
1 TGTATGTG
70257132 TGTATGTG
1 TGTATGTG
70257140 TGTATGTG
1 TGTATGTG
*
70257148 CGTATGTG
1 TGTATGTG
*
70257156 CGTATGTG
1 TGTATGTG
*
70257164 CGTATGTG
1 TGTATGTG
*
70257172 CGTATGTG
1 TGTATGTG
70257180 TGTATGTG
1 TGTATGTG
70257188 TGTATGTG
1 TGTATGTG
70257196 TGTATGTG
1 TGTATGTG
*
70257204 TGTATGTA
1 TGTATGTG
70257212 TGTATGTG
1 TGTATGTG
* *
70257220 TGTATATA
1 TGTATGTG
70257228 TGTATGTG
1 TGTATGTG
70257236 TGTATGTG
1 TGTATGTG
70257244 TGT
1 TGT
70257247 CCGTTATATT
Statistics
Matches: 1239, Mismatches: 98, Indels: 76
0.88 0.07 0.05
Matches are distributed among these distances:
4 4 0.00
6 26 0.02
8 1138 0.92
10 41 0.03
12 30 0.02
ACGTcount: A:0.16, C:0.02, G:0.34, T:0.48
Consensus pattern (8 bp):
TGTATGTG
Found at i:70261705 original size:24 final size:25
Alignment explanation
Indices: 70261655--70261711 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
70261645 AAGCCAAACC
* *
70261655 AAGCCTTTGTGATGAATTATCTGAA
1 AAGCCTTTATGATGAATTATCTCAA
* *
70261680 AAGCTTTTATGATGTATTAT-TCAAA
1 AAGCCTTTATGATGAATTATCTC-AA
70261705 AAGCCTT
1 AAGCCTT
70261712 AATGGCGAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (25 bp):
AAGCCTTTATGATGAATTATCTCAA
Found at i:70266373 original size:29 final size:29
Alignment explanation
Indices: 70266340--70266398 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
70266330 GCTCCGGGAC
70266340 TAGTGACCACACGTTGAAGTAAAAACTTA
1 TAGTGACCACACGTTGAAGTAAAAACTTA
*
70266369 TAGTGACCACACTTTGAAGTAAAAACTTA
1 TAGTGACCACACGTTGAAGTAAAAACTTA
70266398 T
1 T
70266399 CTTTGCATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (29 bp):
TAGTGACCACACGTTGAAGTAAAAACTTA
Found at i:70267505 original size:20 final size:21
Alignment explanation
Indices: 70267470--70267508 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70267460 AAAGCAACAA
70267470 AAAAAAAGTTAAATTTTTTTT
1 AAAAAAAGTTAAATTTTTTTT
*
70267491 AAAAAAAGTT-TATTTTTT
1 AAAAAAAGTTAAATTTTTT
70267509 AAAGCTTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
AAAAAAAGTTAAATTTTTTTT
Found at i:70268522 original size:17 final size:16
Alignment explanation
Indices: 70268497--70268531 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
70268487 AATCCTTAAC
70268497 TCGTCAAATTCCCCAAA
1 TCGTCAAA-TCCCCAAA
*
70268514 TCGTGAAATCCCCAAA
1 TCGTCAAATCCCCAAA
70268530 TC
1 TC
70268532 CATAACATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.34, C:0.34, G:0.09, T:0.23
Consensus pattern (16 bp):
TCGTCAAATCCCCAAA
Found at i:70268582 original size:16 final size:16
Alignment explanation
Indices: 70268563--70268615 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
70268553 TGAATTCCTA
70268563 AAATCTTGAAATCCCT
1 AAATCTTGAAATCCCT
* * *
70268579 AAATATTAAAAT-CTT
1 AAATCTTGAAATCCCT
*
70268594 CAAATTTTGAAATCCCT
1 -AAATCTTGAAATCCCT
70268611 AAATC
1 AAATC
70268616 ATTAGTATTC
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
15 2 0.07
16 24 0.86
17 2 0.07
ACGTcount: A:0.43, C:0.19, G:0.04, T:0.34
Consensus pattern (16 bp):
AAATCTTGAAATCCCT
Found at i:70269012 original size:117 final size:117
Alignment explanation
Indices: 70268802--70269012 Score: 359
Period size: 117 Copynumber: 1.8 Consensus size: 117
70268792 TTTGGTTTGT
* *
70268802 TGGTTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATATAGGGCTTGTTTTGTCGATTTGT
1 TGGTTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATATAGGGCTTGTTTTATCAATTTGT
70268867 GATGCGACAATGGTCCCGATGTTATTGATAAAGCTGTTATTAAAATTGTTTA
66 GATGCGACAATGGTCCCGATGTTATTGATAAAGCTGTTATTAAAATTGTTTA
* *
70268919 TGGTTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTATCAATTTGT
1 TGGTTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATATAGGGCTTGTTTTATCAATTTGT
* * *
70268984 GATGCGACAGTGGTCTCGATGTTGTTGAT
66 GATGCGACAATGGTCCCGATGTTATTGAT
70269013 TTCTGTTACC
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 87 1.00
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.44
Consensus pattern (117 bp):
TGGTTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATATAGGGCTTGTTTTATCAATTTGT
GATGCGACAATGGTCCCGATGTTATTGATAAAGCTGTTATTAAAATTGTTTA
Found at i:70269371 original size:23 final size:23
Alignment explanation
Indices: 70269341--70269387 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
70269331 TGTCATGTTA
70269341 ATATATTTTCATGAGCTTGGTAC
1 ATATATTTTCATGAGCTTGGTAC
70269364 ATATATTTTCATGAGCTTGGTAC
1 ATATATTTTCATGAGCTTGGTAC
70269387 A
1 A
70269388 GTAGGGTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.43
Consensus pattern (23 bp):
ATATATTTTCATGAGCTTGGTAC
Found at i:70269681 original size:33 final size:33
Alignment explanation
Indices: 70269540--70269682 Score: 114
Period size: 33 Copynumber: 4.3 Consensus size: 33
70269530 TGTTGACTAC
* * *
70269540 TGGGAAGGGTGATGTTGAAGGGCTAGAAGTTAA
1 TGGGAAGGGTGATGTAGAAGGGGTAGAAGTTGA
*
70269573 TGGGAAGGGTGATG-ATGAAGGGTTAGAA-TCTGA
1 TGGGAAGGGTGATGTA-GAAGGGGTAGAAGT-TGA
* * * * *
70269606 TGATGAA-GGTGATCTGGAAAGGGTAGAATTTG-
1 TG-GGAAGGGTGATGTAGAAGGGGTAGAAGTTGA
* * *
70269638 TGGGGGAGGGTGATGTAGGAGGGGTACAAGTTGA
1 T-GGGAAGGGTGATGTAGAAGGGGTAGAAGTTGA
70269672 TGGGAAGGGTG
1 TGGGAAGGGTG
70269683 TGTCTGTTAC
Statistics
Matches: 85, Mismatches: 17, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
32 4 0.05
33 76 0.89
34 5 0.06
ACGTcount: A:0.28, C:0.03, G:0.45, T:0.24
Consensus pattern (33 bp):
TGGGAAGGGTGATGTAGAAGGGGTAGAAGTTGA
Found at i:70270387 original size:12 final size:12
Alignment explanation
Indices: 70270370--70270394 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70270360 CTGTTGTTAT
70270370 ATAGTGAAGAAA
1 ATAGTGAAGAAA
70270382 ATAGTGAAGAAA
1 ATAGTGAAGAAA
70270394 A
1 A
70270395 AATGGCTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
ATAGTGAAGAAA
Found at i:70275181 original size:43 final size:42
Alignment explanation
Indices: 70275134--70275237 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
70275124 TCACGGTCAG
** * *
70275134 GGTCTTACACGAAAT-GGAATAACGATGCCAATGTCCTAGATAA
1 GGTCTTACACGAAATCACAAT-AC-ATGCCAATGTCCCAGACAA
* *
70275177 GGTCTTACACGTAATCACAATACATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCACAATACATGCCAATGTCCCAGACAA
* *
70275219 GGTCTTACATGTAATCACA
1 GGTCTTACACGAAATCACA
70275238 TCTCAGTAAC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 34 0.64
43 16 0.30
44 3 0.06
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCACAATACATGCCAATGTCCCAGACAA
Found at i:70275210 original size:42 final size:42
Alignment explanation
Indices: 70275158--70275237 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
70275148 TGGAATAACG
* *
70275158 ATGCCAATGTCCTAGATAAGGTCTTACACGTAATCACAATAC
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACAATAC
* *
70275200 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACA
70275238 TCTCAGTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAAGGTCTTACACGTAATCACAATAC
Found at i:70278584 original size:85 final size:85
Alignment explanation
Indices: 70278441--70278619 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
70278431 GGCCGGCCAT
70278441 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
70278506 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
70278526 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
70278591 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
70278611 GAGCATGGG
1 GAGCATGGG
70278620 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:70279983 original size:40 final size:40
Alignment explanation
Indices: 70279787--70279969 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
70279777 GAATGATGTT
* * * *
70279787 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAC
* *
70279827 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-AC
*
70279867 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
* *
70279906 CGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
*
70279946 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
70279970 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
Found at i:70279991 original size:79 final size:79
Alignment explanation
Indices: 70279838--70279992 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
70279828 GGACTAAGAT
* **
70279838 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
70279903 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
70279917 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
70279980 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
70279993 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:70304418 original size:40 final size:38
Alignment explanation
Indices: 70304365--70304503 Score: 125
Period size: 40 Copynumber: 3.5 Consensus size: 38
70304355 CATGATTGCT
* * *
70304365 CTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 CTTCGGAACTTAGCCCGGATATATCACTAGCAC-AATGC
* * *
70304404 TCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGAACTTAGCCCGGATATA-TCACTAGCA-CAATGC
* * * *
70304445 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACAATGC
*
70304485 CTTCGGGACTTAGCCCGGA
1 CTTCGGAACTTAGCCCGGA
70304504 CATCATTCGA
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
40 62 0.78
41 16 0.20
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (38 bp):
CTTCGGAACTTAGCCCGGATATATCACTAGCACAATGC
Found at i:70304848 original size:29 final size:29
Alignment explanation
Indices: 70304809--70304887 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70304799 CTTAATAATC
*
70304809 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70304839 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70304868 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70304888 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70304930 original size:43 final size:43
Alignment explanation
Indices: 70304869--70304971 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
70304859 TGCATTTCAA
*
70304869 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTAAACACTTATT
70304912 GCCCGCACACTTAGTGCCAATCTCACAACCGTAAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTAAACACTTATT
70304955 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
70304972 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTAAACACTTATT
Found at i:70306874 original size:37 final size:37
Alignment explanation
Indices: 70306824--70306902 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70306814 TTATTACGAA
* * *
70306824 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70306861 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70306898 GTCTT
1 GTCTT
70306903 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70307171 original size:47 final size:47
Alignment explanation
Indices: 70307021--70307352 Score: 540
Period size: 47 Copynumber: 7.1 Consensus size: 47
70307011 CCCTTCGGGA
* * * * * * *
70307021 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70307068 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70307114 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70307161 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70307208 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70307255 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70307302 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70307349 CTTA
1 CTTA
70307353 CTATCATTTC
Statistics
Matches: 269, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 40 0.15
47 229 0.85
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70312117 original size:143 final size:143
Alignment explanation
Indices: 70311859--70312134 Score: 390
Period size: 143 Copynumber: 1.9 Consensus size: 143
70311849 AAAATGGTGG
* * * * *
70311859 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATCGAAGCCACCAGTCTTATCTTCCTGAAGTTAC
1 ATCTTATCCTCCTGAAGTTGCAGTGGAGAAGATCGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
* *
70311924 AACAGAGCAGACTGAAGACAACGAATCTTGTTTTCCTGATATTATAGTGGAATAGATTAAAGCTA
66 AACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGATATTATAGTGGAATAGATTAAAGCTA
70311989 CAAATTATGGCGA
131 CAAATTATGGCGA
* ** *
70312002 ATCTTATCCTCTTGAAGTTGCAGTGGAGAAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCCTCCTGAAGTTGCAGTGGAGAAGATCGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
* * * * * * *
70312067 AGCGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGATGTTGTAGTGGAATAGATTGAAGCTA
66 AACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGATATTATAGTGGAATAGATTAAAGCTA
70312132 CAA
131 CAA
70312135 GTCGTAAACC
Statistics
Matches: 115, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
143 115 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (143 bp):
ATCTTATCCTCCTGAAGTTGCAGTGGAGAAGATCGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
AACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGATATTATAGTGGAATAGATTAAAGCTA
CAAATTATGGCGA
Found at i:70318406 original size:3 final size:3
Alignment explanation
Indices: 70318400--70318475 Score: 127
Period size: 3 Copynumber: 25.7 Consensus size: 3
70318390 TCCAGGTAAG
70318400 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
70318448 TCT TAT TCT TCT TCT TCT T-T TAT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
70318476 AACTTTTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
2 2 0.03
3 67 0.97
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:70320484 original size:448 final size:448
Alignment explanation
Indices: 70319649--70320546 Score: 1760
Period size: 448 Copynumber: 2.0 Consensus size: 448
70319639 TTTATTCCAC
70319649 TGCCCCCTCCTACCTTATGAAATCTACTAGGATAGAGAAGCTTTAGATTTGGTTTTAAGTTTGGA
1 TGCCCCCTCCTACCTTATGAAATCTACTAGGATAGAGAAGCTTTAGATTTGGTTTTAAGTTTGGA
70319714 ATCAAGTTTGAATACCTTTTTTAATTACTTCATTGTTAAAAAATTTTGGAGGCATGACCAATTGT
66 ATCAAGTTTGAATACCTTTTTTAATTACTTCATTGTTAAAAAATTTTGGAGGCATGACCAATTGT
*
70319779 GGTAAGTGATATTTGATGCAACAAGTCAAATTTGGATAGGATAAAGACCAAGGAATTCTATCAGC
131 GGTAAGTGATATTTGATGCAACAAGTCAAATTTGGATAGGATAAAGACCAAGGAATCCTATCAGC
* *
70319844 ACTAGGGAATAAGTACATTGGTCTCAAGGTATCAGAAAAAGACCTAAAAGTAGTAGGTTTTTGGT
196 ACTAGGGAATAAGTACATTGGTCTCAAGGTATCAAAAAAAGACCTAAAAATAGTAGGTTTTTGGT
70319909 GGAATGGAACCTGAATAAGCCGCTTATTTTGCCTAGAGTTTGACCATACTTTTTAAACCTTAGTA
261 GGAATGGAACCTGAATAAGCCGCTTATTTTGCCTAGAGTTTGACCATACTTTTTAAACCTTAGTA
*
70319974 ATACTTCATAACCTAGTTGTACTGCATTGTGCTAACTACGTTTAGAGAACCATTTGAAGGGGGAA
326 ATACTTCATAACCTAGTTGTACTGCATTGTGCTAACAACGTTTAGAGAACCATTTGAAGGGGGAA
70320039 AGAGATGTGAATGCCTATTGTTGTTGCCTTAATTATATTGTTCTCAATTATCTTTTGT
391 AGAGATGTGAATGCCTATTGTTGTTGCCTTAATTATATTGTTCTCAATTATCTTTTGT
70320097 TGCCCCCTCCTACCTTATGAAATCTACTAGGATAGAGAAGCTTTAGATTTGGTTTTAAGTTTGGA
1 TGCCCCCTCCTACCTTATGAAATCTACTAGGATAGAGAAGCTTTAGATTTGGTTTTAAGTTTGGA
70320162 ATCAAGTTTGAATACCTTTTTTAATTACTTCATTGTTAAAAAATTTTGGAGGCATGACCAATTGT
66 ATCAAGTTTGAATACCTTTTTTAATTACTTCATTGTTAAAAAATTTTGGAGGCATGACCAATTGT
70320227 GGTAAGTGATATTTGATGCAACAAGTCAAATTTGGATAGGATAAAGACCAAGGAATCCTATCAGC
131 GGTAAGTGATATTTGATGCAACAAGTCAAATTTGGATAGGATAAAGACCAAGGAATCCTATCAGC
70320292 ACTAGGGAATAAGTACATTGGTCTCAAGGTATCAAAAAAAGACCTAAAAATAGTAGGTTTTTGGT
196 ACTAGGGAATAAGTACATTGGTCTCAAGGTATCAAAAAAAGACCTAAAAATAGTAGGTTTTTGGT
70320357 GGAATGGAACCTGAATAAGCCGCTTATTTTGCCTAGAGTTTGACCATACTTTTTAAACCTTAGTA
261 GGAATGGAACCTGAATAAGCCGCTTATTTTGCCTAGAGTTTGACCATACTTTTTAAACCTTAGTA
70320422 ATACTTCATAACCTAGTTGTACTGCATTGTGCTAACAACGTTTAGAGAACCATTTGAAGGGGGAA
326 ATACTTCATAACCTAGTTGTACTGCATTGTGCTAACAACGTTTAGAGAACCATTTGAAGGGGGAA
70320487 AGAGATGTGAATGCCTATTGTTGTTGCCTTAATTATATTGTTCTCAATTATCTTTTGT
391 AGAGATGTGAATGCCTATTGTTGTTGCCTTAATTATATTGTTCTCAATTATCTTTTGT
70320545 TG
1 TG
70320547 GTTCCTATGC
Statistics
Matches: 446, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
448 446 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (448 bp):
TGCCCCCTCCTACCTTATGAAATCTACTAGGATAGAGAAGCTTTAGATTTGGTTTTAAGTTTGGA
ATCAAGTTTGAATACCTTTTTTAATTACTTCATTGTTAAAAAATTTTGGAGGCATGACCAATTGT
GGTAAGTGATATTTGATGCAACAAGTCAAATTTGGATAGGATAAAGACCAAGGAATCCTATCAGC
ACTAGGGAATAAGTACATTGGTCTCAAGGTATCAAAAAAAGACCTAAAAATAGTAGGTTTTTGGT
GGAATGGAACCTGAATAAGCCGCTTATTTTGCCTAGAGTTTGACCATACTTTTTAAACCTTAGTA
ATACTTCATAACCTAGTTGTACTGCATTGTGCTAACAACGTTTAGAGAACCATTTGAAGGGGGAA
AGAGATGTGAATGCCTATTGTTGTTGCCTTAATTATATTGTTCTCAATTATCTTTTGT
Found at i:70322667 original size:15 final size:15
Alignment explanation
Indices: 70322647--70322678 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
70322637 CCCTTAAATG
70322647 ATGGTAACTTTAGTC
1 ATGGTAACTTTAGTC
70322662 ATGGTAACTTTAGTC
1 ATGGTAACTTTAGTC
70322677 AT
1 AT
70322679 TGCTTGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (15 bp):
ATGGTAACTTTAGTC
Found at i:70324245 original size:32 final size:32
Alignment explanation
Indices: 70324197--70324272 Score: 116
Period size: 32 Copynumber: 2.3 Consensus size: 32
70324187 TTGAATTTGT
70324197 TTGATATTGATTATGTTTTAAGCTTGTTAGATA
1 TTGA-ATTGATTATGTTTTAAGCTTGTTAGATA
* *
70324230 TTGAATTTATTATGTTTTAAGCTTGTTCGATA
1 TTGAATTGATTATGTTTTAAGCTTGTTAGATA
*
70324262 TTGAAATGATT
1 TTGAATTGATT
70324273 GACAATGACA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 35 0.90
33 4 0.10
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.51
Consensus pattern (32 bp):
TTGAATTGATTATGTTTTAAGCTTGTTAGATA
Found at i:70325835 original size:14 final size:14
Alignment explanation
Indices: 70325798--70325824 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70325788 CCAGAAAAGT
70325798 AAATCATTTTCCAA
1 AAATCATTTTCCAA
70325812 AAATCATTTTCCA
1 AAATCATTTTCCA
70325825 GAGAATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:70326321 original size:21 final size:22
Alignment explanation
Indices: 70326281--70326321 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
70326271 TTAAGAAGGG
70326281 CACACGGGCGTGTCGCCCCTTC
1 CACACGGGCGTGTCGCCCCTTC
*
70326303 CACACTGGCGTGT-GCCCCT
1 CACACGGGCGTGTCGCCCCT
70326322 GTTTCAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.44, G:0.27, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTCGCCCCTTC
Found at i:70328562 original size:41 final size:42
Alignment explanation
Indices: 70328437--70328582 Score: 113
Period size: 41 Copynumber: 3.4 Consensus size: 42
70328427 ATGTGTTCTT
* * *
70328437 GTGTAAGACCAC-GTTTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACC-CTGTCTGGGAAG-TGGCATCG--ATATGTGATTAC
* * * *
70328482 GTATAAGAACATGTCTGGGACA-TCGGCATCG-TATTTGATT-C
1 GTGTAAGACCCTGTCTGGGA-AGT-GGCATCGATATGTGATTAC
70328523 GTGTAAGACCCTGTCTGGGAAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCCTGTCTGGGAAGTGGCATCGATATGTGATTAC
* *
70328565 ATATAAGACCAC-GTCTGG
1 GTGTAAGACC-CTGTCTGG
70328583 AACATTGGCA
Statistics
Matches: 81, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
40 8 0.10
41 27 0.33
42 22 0.27
43 1 0.01
44 1 0.01
45 22 0.27
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCCTGTCTGGGAAGTGGCATCGATATGTGATTAC
Found at i:70328581 original size:83 final size:85
Alignment explanation
Indices: 70328437--70328592 Score: 201
Period size: 83 Copynumber: 1.8 Consensus size: 85
70328427 ATGTGTTCTT
* * * * * *
70328437 GTGTAAGACCACGTTTGGGACGTTGGCATCGATATATGTGGTTACGTATAAGAACATGTCTGGGA
1 GTGTAAGACCACGTCTGGGAAGTTGGCATCGA-ATATGTGATTACATATAAGAACACGTCTGGAA
70328502 CATCGGCATCGTATTTGATTC
65 CATCGGCATCGTATTTGATTC
*
70328523 GTGTAAGACC-CTGTCTGGGAAG-TGGCATCG-ATATGTGATTACATATAAGACCACGTCTGGAA
1 GTGTAAGACCAC-GTCTGGGAAGTTGGCATCGAATATGTGATTACATATAAGAACACGTCTGGAA
*
70328585 CATTGGCA
65 CATCGGCA
70328593 CTATACGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
83 34 0.56
85 9 0.15
86 18 0.30
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (85 bp):
GTGTAAGACCACGTCTGGGAAGTTGGCATCGAATATGTGATTACATATAAGAACACGTCTGGAAC
ATCGGCATCGTATTTGATTC
Found at i:70335847 original size:49 final size:49
Alignment explanation
Indices: 70335791--70335918 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
70335781 TATGTGTGCT
* *
70335791 AGTGTAAGACCTGTCTGGGACACGGCATCGGCATCGATAGATG-AGAGCC
1 AGTGTAAGACCTGTCTGGGACACGGCATCGGCATCAAGAGATGCA-AGCC
* * * * *
70335840 AGTGTAAGACCTATCTAGGACACGGCATCGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACACGGCATCGGCATCAAGAGATGCAAGCC
* * *
70335889 AGTGTAAGACCTGTCCGAGACATGGCATCG
1 AGTGTAAGACCTGTCTGGGACACGGCATCG
70335919 ACTTAAGGTG
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 65 0.98
50 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACACGGCATCGGCATCAAGAGATGCAAGCC
Found at i:70336007 original size:49 final size:46
Alignment explanation
Indices: 70335791--70336009 Score: 135
Period size: 49 Copynumber: 4.6 Consensus size: 46
70335781 TATGTGTGCT
* *
70335791 AGTGTAAGACCTGTCTGGGACACGGCATCGGCATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATC-GCA-CGATAG-TGAGAGCC
* * * *
70335840 AGTGTAAGACCTATCTAGGACACGGCATCGGCCTCAAGATA-TGCA-AGCT
1 AGTGTAAGACCTGTCTAGGACATGGCATC-G---CACGATAGTG-AGAGCC
* * * * *
70335889 AGTGTAAGACCTGTC-CGAGACATGGCATCG-AC-TTAAG-GTGTGTC
1 AGTGTAAGACCTGTCTAG-GACATGGCATCGCACGAT-AGTGAGAGCC
* * * *
70335933 AATGTAAGACCTATCTGGGATATGGCATCGACACAGATAAGTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCG-CAC-GAT-AGTGAGAGCC
*
70335982 AGTGTAAGAGCTGTCTAGGACATGGCAT
1 AGTGTAAGACCTGTCTAGGACATGGCAT
70336010 AAGCCTCAAT
Statistics
Matches: 130, Mismatches: 26, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
43 1 0.01
44 28 0.22
45 1 0.01
46 2 0.02
48 6 0.05
49 85 0.65
50 1 0.01
51 4 0.03
52 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGCACGATAGTGAGAGCC
Found at i:70336172 original size:16 final size:16
Alignment explanation
Indices: 70336149--70336204 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
70336139 CGTTTGGTTG
*
70336149 GCTGTAATGGAATAGG
1 GCTGTAATGGAATAGA
* *
70336165 GTTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
70336181 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
70336197 GCTGTAAT
1 GCTGTAAT
70336205 AAGTAATTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:70336279 original size:44 final size:46
Alignment explanation
Indices: 70336186--70336279 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
70336176 ATAGAGCTGT
*
70336186 AATGGAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
***
70336232 AATGGAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
70336276 AATG
1 AATG
70336280 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
Found at i:70340653 original size:27 final size:27
Alignment explanation
Indices: 70340622--70340681 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
70340612 AAATTCTAAT
*
70340622 AAAAATCT-TTAAAAATGAAAAAAATTAC
1 AAAAATATATTAAAAAT--AAAAAATTAC
*
70340650 AAAAATATATTAAAAATATAAAATTAC
1 AAAAATATATTAAAAATAAAAAATTAC
70340677 AAAAA
1 AAAAA
70340682 AACTATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 14 0.48
28 7 0.24
29 8 0.28
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAAATATATTAAAAATAAAAAATTAC
Found at i:70340690 original size:27 final size:27
Alignment explanation
Indices: 70340642--70340693 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
70340632 AAAAATGAAA
*
70340642 AAAATTACAAAAATATATTAAAAATAT
1 AAAATTACAAAAAAATATTAAAAATAT
70340669 AAAATTACAAAAAAACTA-TAAAAAT
1 AAAATTACAAAAAAA-TATTAAAAAT
70340694 TTACTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (27 bp):
AAAATTACAAAAAAATATTAAAAATAT
Found at i:70342250 original size:13 final size:14
Alignment explanation
Indices: 70342232--70342268 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
70342222 GAATGAAGAA
70342232 GAAGGAAGATGA-T
1 GAAGGAAGATGAGT
70342245 GAAGGAAGATGATGT
1 GAAGGAAGATGA-GT
70342260 GAAGGAAGA
1 GAAGGAAGA
70342269 AGAAGCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 12 0.55
15 10 0.45
ACGTcount: A:0.46, C:0.00, G:0.41, T:0.14
Consensus pattern (14 bp):
GAAGGAAGATGAGT
Found at i:70345181 original size:17 final size:17
Alignment explanation
Indices: 70345159--70345243 Score: 54
Period size: 17 Copynumber: 4.9 Consensus size: 17
70345149 AAAACAGAAT
70345159 AAATAATAATAAAAATA
1 AAATAATAATAAAAATA
*
70345176 AAATAA-AATAGCAAATAA
1 AAATAATAATA-AAAAT-A
*
70345194 TAAATAATAA-AGAAATA
1 -AAATAATAATAAAAATA
70345211 AAGA-AATAA-AATAAA-A
1 AA-ATAATAATAA-AAATA
70345227 AAATAAATAATATAAAA
1 AAAT-AATAATA-AAAA
70345244 GATAAGGGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
15 1 0.02
16 15 0.27
17 20 0.36
18 9 0.16
19 8 0.15
20 2 0.04
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.20
Consensus pattern (17 bp):
AAATAATAATAAAAATA
Found at i:70345196 original size:36 final size:35
Alignment explanation
Indices: 70345156--70345248 Score: 102
Period size: 36 Copynumber: 2.6 Consensus size: 35
70345146 ACAAAAACAG
*
70345156 AATAAATAATAATAAAA-ATAAAATAAAATAGCAAAT
1 AATAAATAATAATAAAAGATAAAATAAAATA--AAAA
* *
70345192 AATAAATAATAA-AGAAATAAAGAAATAAAATAAAAA
1 AATAAATAATAATA-AAAGATA-AAATAAAATAAAAA
70345228 AATAAATAAT-ATAAAAGATAA
1 AATAAATAATAATAAAAGATAA
70345249 GGGTAAAAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
34 1 0.02
35 7 0.14
36 29 0.59
37 2 0.04
38 10 0.20
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.20
Consensus pattern (35 bp):
AATAAATAATAATAAAAGATAAAATAAAATAAAAA
Found at i:70345225 original size:21 final size:22
Alignment explanation
Indices: 70345173--70345243 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
70345163 AATAATAAAA
* ** *
70345173 ATAAAATAAAATAGCAAATAAT
1 ATAAAATAAAAAAATAAAGAAT
*
70345195 A-AATAATAAAGAAATAAAGAA-
1 ATAA-AATAAAAAAATAAAGAAT
*
70345216 ATAAAATAAAAAAATAAATAAT
1 ATAAAATAAAAAAATAAAGAAT
70345238 ATAAAA
1 ATAAAA
70345244 GATAAGGGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
21 18 0.46
22 21 0.54
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.20
Consensus pattern (22 bp):
ATAAAATAAAAAAATAAAGAAT
Found at i:70345236 original size:4 final size:4
Alignment explanation
Indices: 70345188--70345242 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
70345178 ATAAAATAGC
* * *
70345188 AAAT -AAT AAAT -AAT AAAG AAAT AAAG AAAT AAAAT AAAA AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT
70345235 AATAT AAA
1 AA-AT AAA
70345243 AGATAAGGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
3 6 0.15
4 27 0.66
5 8 0.20
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:70348901 original size:5 final size:6
Alignment explanation
Indices: 70348858--70348915 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
70348848 ATTAGAAAAC
* * * * **
70348858 AAAATT AAACTA AAAACA AAAACA AAAAT- GCAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
70348905 AAAATA AAAAT
1 AAAATA AAAAT
70348916 CTAGTGTTCC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 3 0.07
6 39 0.93
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:70349998 original size:30 final size:30
Alignment explanation
Indices: 70349964--70350021 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
70349954 CATAGGCTGG
70349964 CACATGGGTC-TGTTGC-CAGCCTGTGTGGCT
1 CACATGGG-CATG-TGCTCAGCCTGTGTGGCT
70349994 CACATGGGCATGTGCTCAGCCTGTGTGG
1 CACATGGGCATGTGCTCAGCCTGTGTGG
70350022 GAATGCCCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.12, C:0.26, G:0.34, T:0.28
Consensus pattern (30 bp):
CACATGGGCATGTGCTCAGCCTGTGTGGCT
Found at i:70350829 original size:23 final size:23
Alignment explanation
Indices: 70350802--70350846 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
70350792 AAAAGATTAA
*
70350802 GGATTTCACGATTTGGGTCTAAG
1 GGATTTCAAGATTTGGGTCTAAG
*
70350825 GGATTTCAAGATTTGGTTCTAA
1 GGATTTCAAGATTTGGGTCTAA
70350847 AAGATTAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.38
Consensus pattern (23 bp):
GGATTTCAAGATTTGGGTCTAAG
Found at i:70350852 original size:23 final size:23
Alignment explanation
Indices: 70350803--70350852 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
70350793 AAAGATTAAG
* **
70350803 GATTTCACGATTTGGGTCTAAGG
1 GATTTCAAGATTTGGGTCTAAAA
*
70350826 GATTTCAAGATTTGGTTCTAAAA
1 GATTTCAAGATTTGGGTCTAAAA
70350849 GATT
1 GATT
70350853 AAGGATGTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (23 bp):
GATTTCAAGATTTGGGTCTAAAA
Found at i:70353400 original size:12 final size:12
Alignment explanation
Indices: 70353352--70353402 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
70353342 AGGTCATGAT
*
70353352 CGTGGTCGTGGT
1 CGTGGTCGTGGA
70353364 CGTGGTCGTGGA
1 CGTGGTCGTGGA
* * *
70353376 CGTAGTAGGGGA
1 CGTGGTCGTGGA
*
70353388 CGTGGTCGAGGA
1 CGTGGTCGTGGA
70353400 CGT
1 CGT
70353403 ACTAGTAATC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.12, C:0.16, G:0.49, T:0.24
Consensus pattern (12 bp):
CGTGGTCGTGGA
Found at i:70361680 original size:15 final size:15
Alignment explanation
Indices: 70361660--70361691 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
70361650 GATACTGATC
70361660 CACCGTACCGATCAT
1 CACCGTACCGATCAT
70361675 CACCGTACCGATCAT
1 CACCGTACCGATCAT
70361690 CA
1 CA
70361692 AATCATCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.41, G:0.12, T:0.19
Consensus pattern (15 bp):
CACCGTACCGATCAT
Found at i:70364412 original size:16 final size:16
Alignment explanation
Indices: 70364391--70364447 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
70364381 TTCGCTGTAT
70364391 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
70364407 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
70364423 TGGAATAAAGGTGTAA
1 TGGAATAGAGGCGTAA
*
70364439 TGGATTAGA
1 TGGAATAGA
70364448 TGTGTAATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.39, C:0.04, G:0.35, T:0.23
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:70364452 original size:16 final size:16
Alignment explanation
Indices: 70364386--70364455 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
70364376 TTTGGTTCGC
*
70364386 TGTATTGGAATAGAGG
1 TGTAATGGAATAGAGG
*
70364402 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
* *
70364418 CGTAATGGAATAAAGG
1 TGTAATGGAATAGAGG
* *
70364434 TGTAATGGATTAGATG
1 TGTAATGGAATAGAGG
70364450 TGTAAT
1 TGTAAT
70364456 AGCAAATCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.36, C:0.03, G:0.33, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:70364769 original size:61 final size:61
Alignment explanation
Indices: 70364704--70365014 Score: 240
Period size: 61 Copynumber: 5.2 Consensus size: 61
70364694 TTATAATTAA
*
70364704 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTATTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * *
70364765 AATATATGATACT-ATAAAA-TA-T-A-AATTAACATAATTATTAT-TAAATATA-TTATAATTA
1 AATATATAAT-TTAATAAAATTATTAATAATT-A-AT-ATTCTTATATGAATTTACTCA-AATCA
*
70364823 A
61 T
*
70364824 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTATTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * *
70364885 AATATATGATACT-ATAAAA-TATAAATTAAATTAATTATTTTTAAATAT-AATTTAAT--AA--
1 AATATATAAT-TTAATAAAATTATTAA-T-AATTAA-TATTCTT--ATATGAATTTACTCAAATC
70364943 A-
60 AT
* * *
70364944 AATATATAATTTAATAAAATTATTAATAGTAAATA-TCATTATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTATTAATAATTAATATTC-TTATATGAATTTACTCAAATCAT
70365005 AATATATAAT
1 AATATATAAT
70365015 ACTATAAAAT
Statistics
Matches: 192, Mismatches: 31, Indels: 54
0.69 0.11 0.19
Matches are distributed among these distances:
55 4 0.02
56 8 0.04
57 8 0.04
58 12 0.06
59 44 0.23
60 27 0.14
61 54 0.28
62 14 0.07
63 10 0.05
64 7 0.04
65 4 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTATTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:70364837 original size:14 final size:15
Alignment explanation
Indices: 70364788--70364839 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
70364778 ATAAAATATA
70364788 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
70364803 TATTAAATATATTAT
1 AATTAAATATATTAT
70364818 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
70364831 AATTTAATA
1 AATTAAATA
70364840 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:70364885 original size:120 final size:120
Alignment explanation
Indices: 70364672--70365039 Score: 598
Period size: 120 Copynumber: 3.1 Consensus size: 120
70364662 ATCATATTTA
*
70364672 AACATAATTACTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
70364737 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
70364792 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
70364857 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * * * *
70364912 AA-ATTAATTATTTTTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTATTAATAGTA
1 AACA-TAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
* * *
70364975 AATA-TCATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTT
64 AATATTC-TTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
70365032 AAAATAAT
1 AACATAAT
70365040 AAAATTTGAA
Statistics
Matches: 235, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
119 3 0.01
120 228 0.97
121 4 0.02
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:70365348 original size:17 final size:16
Alignment explanation
Indices: 70365326--70365393 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 16
70365316 CTTATATGCT
70365326 TTAATTTATTGCATGTA
1 TTAATTTATT-CATGTA
**
70365343 TTAATTTATTTTTGATA
1 TTAATTTATTCATG-TA
*
70365360 TTATTTTTATATCATGTA
1 TTA-ATTTAT-TCATGTA
70365378 TTAATTTATTGCATGT
1 TTAATTTATT-CATGT
70365394 TTGTATTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
16 3 0.07
17 25 0.61
18 10 0.24
19 3 0.07
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.59
Consensus pattern (16 bp):
TTAATTTATTCATGTA
Found at i:70375575 original size:115 final size:115
Alignment explanation
Indices: 70375373--70375602 Score: 460
Period size: 115 Copynumber: 2.0 Consensus size: 115
70375363 TGGGGGGGGG
70375373 GGAGGTTAATTGAAAATACATGCTTGACCCTATGGGATTATCAGTTTTCTTTGGTATCTTAAATA
1 GGAGGTTAATTGAAAATACATGCTTGACCCTATGGGATTATCAGTTTTCTTTGGTATCTTAAATA
70375438 TATTCCCGGGAAACAAGCAGAATTTTTACATAGTAATCAAAAGGGTAATA
66 TATTCCCGGGAAACAAGCAGAATTTTTACATAGTAATCAAAAGGGTAATA
70375488 GGAGGTTAATTGAAAATACATGCTTGACCCTATGGGATTATCAGTTTTCTTTGGTATCTTAAATA
1 GGAGGTTAATTGAAAATACATGCTTGACCCTATGGGATTATCAGTTTTCTTTGGTATCTTAAATA
70375553 TATTCCCGGGAAACAAGCAGAATTTTTACATAGTAATCAAAAGGGTAATA
66 TATTCCCGGGAAACAAGCAGAATTTTTACATAGTAATCAAAAGGGTAATA
70375603 TAACTTTATA
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 115 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (115 bp):
GGAGGTTAATTGAAAATACATGCTTGACCCTATGGGATTATCAGTTTTCTTTGGTATCTTAAATA
TATTCCCGGGAAACAAGCAGAATTTTTACATAGTAATCAAAAGGGTAATA
Found at i:70381676 original size:14 final size:14
Alignment explanation
Indices: 70381657--70381688 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
70381647 TTTATATCAT
70381657 TAAAAAGTATCAAA
1 TAAAAAGTATCAAA
70381671 TAAAAAGTATCAAA
1 TAAAAAGTATCAAA
70381685 TAAA
1 TAAA
70381689 GTCGCTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (14 bp):
TAAAAAGTATCAAA
Found at i:70383229 original size:38 final size:38
Alignment explanation
Indices: 70383187--70383262 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
70383177 AGTTGAAGAG
*
70383187 AGTATTAAACTGTTCGCAAGAAGTCAATTGAATTTTAA
1 AGTATTAAACTGTTCACAAGAAGTCAATTGAATTTTAA
70383225 AGTATTAAACTGTTCACAAGAAGTCAATTGAATTTTAA
1 AGTATTAAACTGTTCACAAGAAGTCAATTGAATTTTAA
70383263 CTTAATTGGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (38 bp):
AGTATTAAACTGTTCACAAGAAGTCAATTGAATTTTAA
Found at i:70384400 original size:14 final size:15
Alignment explanation
Indices: 70384365--70384420 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
70384355 AATTCAGTAT
* *
70384365 TTAAGTTTTCAATAC
1 TTAATTTTTCAACAC
70384380 TTAATTTTTCAACAC
1 TTAATTTTTCAACAC
* * *
70384395 TTATTTTTTCAGCAT
1 TTAATTTTTCAACAC
70384410 TTAATTTTTCA
1 TTAATTTTTCA
70384421 GTTTATCAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.04, T:0.54
Consensus pattern (15 bp):
TTAATTTTTCAACAC
Found at i:70389533 original size:64 final size:64
Alignment explanation
Indices: 70389323--70389577 Score: 194
Period size: 64 Copynumber: 4.0 Consensus size: 64
70389313 AGACAAGGAA
* * * * * * *
70389323 AAGCCACTCGAGTGAGTGGGATCTCACATGGGCCTGGGAGAAGCGAAAGA-AACCCTACACGGCC
1 AAGCCACACGAGTGTGTGGGATCTCACATGGGCATGGGAGAAGCGAAGGAGATCAC-ACACGACC
* * * * * *
70389387 AAGCCACACG-GTCGTGTGCGAT-TCCACACGGGCATAGGAGAAGCAAAGGGGATCATACACGGA
1 AAGCCACACGAGT-GTGTGGGATCT-CACATGGGCATGGGAGAAGCGAAGGAGATCACACAC-GA
*
70389450 -T
63 CC
* * * * * *
70389451 GAGCCACACGGGCGTGTGGGATCTCACATGGGCTTGGGAGAAGTGAAGGAGATTACACACGACC
1 AAGCCACACGAGTGTGTGGGATCTCACATGGGCATGGGAGAAGCGAAGGAGATCACACACGACC
* * * * * * * *
70389515 AAGCCACACGAGTGTGTGGAATCTTACATAGGCGTGGGAGAAGCAAAGAAAAACACACACGAC
1 AAGCCACACGAGTGTGTGGGATCTCACATGGGCATGGGAGAAGCGAAGGAGATCACACACGAC
70389578 TTGGCACACG
Statistics
Matches: 145, Mismatches: 39, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
63 5 0.03
64 135 0.93
65 5 0.03
ACGTcount: A:0.32, C:0.23, G:0.31, T:0.14
Consensus pattern (64 bp):
AAGCCACACGAGTGTGTGGGATCTCACATGGGCATGGGAGAAGCGAAGGAGATCACACACGACC
Found at i:70389575 original size:128 final size:128
Alignment explanation
Indices: 70389338--70389575 Score: 266
Period size: 128 Copynumber: 1.9 Consensus size: 128
70389328 ACTCGAGTGA
* *
70389338 GTGGGATCTCACATGGGCCTGGGAGAAGCGAAAGAAACCCTACACGGCCAAGCCACACGGTCGTG
1 GTGGGATCTCACATGGGCCTGGGAGAAGCGAAAGAAACACTACACGACCAAGCCACACGGTCGTG
* * *** * *
70389403 TGCGATTCCACACGGGCATAGGAGAAGCAAAGGGGATCATACACGGATGAGCCACACGGGCGT
66 TGCGAATCCACACAGGCATAGGAGAAGCAAAGAAAAACACACACGGATGAGCCACACGGGCGT
* * * **
70389466 GTGGGATCTCACATGGGCTTGGGAGAAGTGAAGGAGATTAC-ACACGACCAAGCCACACGAGT-G
1 GTGGGATCTCACATGGGCCTGGGAGAAGCGAAAGA-AACACTACACGACCAAGCCACACG-GTCG
* * * *
70389529 TGTG-GAATCTTACATAGGCGTGGGAGAAGCAAAGAAAAACACACACG
64 TGTGCGAATC-CACACAGGCATAGGAGAAGCAAAGAAAAACACACACG
70389576 ACTTGGCACA
Statistics
Matches: 89, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
127 4 0.04
128 81 0.91
129 4 0.04
ACGTcount: A:0.32, C:0.23, G:0.32, T:0.14
Consensus pattern (128 bp):
GTGGGATCTCACATGGGCCTGGGAGAAGCGAAAGAAACACTACACGACCAAGCCACACGGTCGTG
TGCGAATCCACACAGGCATAGGAGAAGCAAAGAAAAACACACACGGATGAGCCACACGGGCGT
Found at i:70390229 original size:28 final size:27
Alignment explanation
Indices: 70390165--70390231 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
70390155 ACATAAATTG
* * *
70390165 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
70390192 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
70390221 AAAATAAAATA
1 AAAATAAAATA
70390232 TATATATATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 4 0.12
28 20 0.62
29 8 0.25
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:70390920 original size:20 final size:20
Alignment explanation
Indices: 70390895--70390941 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
70390885 GCTGGATTCT
70390895 CCTTCAAGACTGAAGACCTC
1 CCTTCAAGACTGAAGACCTC
* *
70390915 CCTTCAAGACTGAAGATCTT
1 CCTTCAAGACTGAAGACCTC
70390935 CCTTCAA
1 CCTTCAA
70390942 TTTCCTTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.26
Consensus pattern (20 bp):
CCTTCAAGACTGAAGACCTC
Found at i:70391894 original size:25 final size:24
Alignment explanation
Indices: 70391831--70391896 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 24
70391821 ATTTTCTTTC
70391831 TTTATTATTTGTTAT-AT-TATTTA
1 TTTATTATTT-TTATAATCTATTTA
*
70391854 TTT-TTA-TTTTACTAATCTATTTT
1 TTTATTATTTTTA-TAATCTATTTA
70391877 TTTATTATTTTTATTAATCT
1 TTTATTATTTTTA-TAATCT
70391897 TATACTTAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
20 3 0.08
21 3 0.08
22 5 0.14
23 11 0.31
24 3 0.08
25 11 0.31
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTATTATTTTTATAATCTATTTA
Found at i:70392039 original size:24 final size:23
Alignment explanation
Indices: 70392004--70392053 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 23
70391994 ATTAAGTTTA
70392004 TTTCTTTTCTTTTTATATTTTGT
1 TTTCTTTTCTTTTTATATTTTGT
70392027 TTTCTTTTTCTTTTTATATTTTGT
1 TTTC-TTTTCTTTTTATATTTTGT
70392051 TTT
1 TTT
70392054 TAGTTGCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (23 bp):
TTTCTTTTCTTTTTATATTTTGT
Found at i:70392066 original size:25 final size:24
Alignment explanation
Indices: 70392004--70392065 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
70391994 ATTAAGTTTA
*
70392004 TTTCT-TTTCTTTTTATATTTTGT
1 TTTCTGTTGCTTTTTATATTTTGT
* *
70392027 TTTCTTTTTCTTTTTATATTTTGT
1 TTTCTGTTGCTTTTTATATTTTGT
70392051 TTT-TAGTTGCTTTTT
1 TTTCT-GTTGCTTTTT
70392066 TTTATTTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 6 0.17
24 29 0.83
ACGTcount: A:0.08, C:0.08, G:0.06, T:0.77
Consensus pattern (24 bp):
TTTCTGTTGCTTTTTATATTTTGT
Found at i:70396781 original size:44 final size:45
Alignment explanation
Indices: 70396666--70396818 Score: 177
Period size: 44 Copynumber: 3.4 Consensus size: 45
70396656 ACTCGGGAAA
* * * * *
70396666 CTCGCACACTTAGTGCCAAATA-A-ATAGCCGAAGCTGTATCAAT
1 CTCGCACACTAAGTGCCAAATATATATAGCTGAAGCTATCTCGAT
70396709 CTCGCACACTAAGTGCCAATATACATATATATAGCTGAAGCTATCTCGAT
1 CTCGCACACTAAGTGCC---A-A-ATATATATAGCTGAAGCTATCTCGAT
*
70396759 CTCGCACACTAAGTG-CAAATATATATAGCTGAAGCTATCTTGAT
1 CTCGCACACTAAGTGCCAAATATATATAGCTGAAGCTATCTCGAT
*
70396803 TTCGCACACTAAGTGC
1 CTCGCACACTAAGTGC
70396819 ACATAATTAG
Statistics
Matches: 95, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
43 16 0.17
44 39 0.41
45 1 0.01
46 2 0.02
47 1 0.01
48 3 0.03
49 2 0.02
50 31 0.33
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (45 bp):
CTCGCACACTAAGTGCCAAATATATATAGCTGAAGCTATCTCGAT
Found at i:70398295 original size:16 final size:16
Alignment explanation
Indices: 70398274--70398308 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
70398264 CCAATATCTA
* *
70398274 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
70398290 ATTATCACATTTACAC
1 ATTATCACATTTACAC
70398306 ATT
1 ATT
70398309 TATTCATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:70400763 original size:26 final size:26
Alignment explanation
Indices: 70400717--70400769 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
70400707 TCAAACATGC
*
70400717 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
70400743 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
70400769 A
1 A
70400770 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:70402287 original size:26 final size:26
Alignment explanation
Indices: 70402257--70402338 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
70402247 TGAAATGCCC
*
70402257 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
70402283 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
*
70402309 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAACCCATT
70402335 ATCA
1 ATCA
70402339 GTTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAACCCATT
Found at i:70409538 original size:6 final size:6
Alignment explanation
Indices: 70409527--70409558 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
70409517 GGATTCATCA
70409527 TCTTGC TCTTGC TCTTGC TCTTGC TCTTGC TC
1 TCTTGC TCTTGC TCTTGC TCTTGC TCTTGC TC
70409559 ATCATGTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.16, T:0.50
Consensus pattern (6 bp):
TCTTGC
Found at i:70419910 original size:39 final size:39
Alignment explanation
Indices: 70419866--70420024 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
70419856 ATTATATTAT
* *
70419866 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
70419905 CAGCACGAAGCCTGCGGGACTTTGGCCCAGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
70419944 CAGCATGAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
70419983 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
70420022 CAG
1 CAG
70420025 TGTCTTGCAT
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:70427970 original size:6 final size:6
Alignment explanation
Indices: 70427965--70428054 Score: 108
Period size: 6 Copynumber: 15.0 Consensus size: 6
70427955 TATACCTATA
* *
70427965 TATATA TATATG TATATG CATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* * * * * *
70428013 TATATG TATATG TGTATG TGTTTG TGTATG TGTATG TGTATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG
70428055 CGTGTTATGG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 78 1.00
ACGTcount: A:0.28, C:0.01, G:0.21, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:70428369 original size:22 final size:22
Alignment explanation
Indices: 70428344--70428409 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 22
70428334 TAATTATACA
70428344 TAGTTTTAATTGGTATAATAAT
1 TAGTTTTAATTGGTATAATAAT
* *
70428366 TAG-TTTAGTT--T-T--TAAA
1 TAGTTTTAATTGGTATAATAAT
70428382 TAGTTTTAATTGGTATAATAAT
1 TAGTTTTAATTGGTATAATAAT
70428404 TAGTTT
1 TAGTTT
70428410 AGTTTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
16 6 0.18
17 6 0.18
18 1 0.03
19 2 0.06
20 1 0.03
21 6 0.18
22 12 0.35
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (22 bp):
TAGTTTTAATTGGTATAATAAT
Found at i:70428385 original size:38 final size:38
Alignment explanation
Indices: 70428343--70428423 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
70428333 TTAATTATAC
70428343 ATAGTTTTAATTGGTATAATAATTAGTTTAGTTTTTAA
1 ATAGTTTTAATTGGTATAATAATTAGTTTAGTTTTTAA
70428381 ATAGTTTTAATTGGTATAATAATTAGTTTAGTTTTTAA
1 ATAGTTTTAATTGGTATAATAATTAGTTTAGTTTTTAA
70428419 A-AGTT
1 ATAGTT
70428424 ACATATTTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 4 0.09
38 39 0.91
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.52
Consensus pattern (38 bp):
ATAGTTTTAATTGGTATAATAATTAGTTTAGTTTTTAA
Found at i:70430469 original size:17 final size:16
Alignment explanation
Indices: 70430449--70430489 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
70430439 TTTTGTTGAC
*
70430449 TTTAGATTTCGGTTAAT
1 TTTAGATTT-GGATAAT
*
70430466 TTTAGATTTTGATAAT
1 TTTAGATTTGGATAAT
70430482 TTTAGATT
1 TTTAGATT
70430490 CTAGTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.27, C:0.02, G:0.15, T:0.56
Consensus pattern (16 bp):
TTTAGATTTGGATAAT
Found at i:70436423 original size:19 final size:20
Alignment explanation
Indices: 70436401--70436453 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
70436391 TGAATCAAAA
70436401 TTTAAAA-TTTTAATAATTT
1 TTTAAAATTTTTAATAATTT
*
70436420 TTTAAAATTTTTATTAA--T
1 TTTAAAATTTTTAATAATTT
70436438 TTTAAGAATTTTTAAT
1 TTTAA-AATTTTTAAT
70436454 TGTTTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 6 0.20
19 16 0.53
20 8 0.27
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTAAAATTTTTAATAATTT
Found at i:70436437 original size:20 final size:19
Alignment explanation
Indices: 70436401--70436440 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
70436391 TGAATCAAAA
70436401 TTTAAAATTTTAATAATTT
1 TTTAAAATTTTAATAATTT
*
70436420 TTTAAAATTTTTATTAATTT
1 TTTAAAA-TTTTAATAATTT
70436440 T
1 T
70436441 AAGAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTAAAATTTTAATAATTT
Found at i:70436450 original size:10 final size:10
Alignment explanation
Indices: 70436408--70436453 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
70436398 AAATTTAAAA
70436408 TTTTAATAATT
1 TTTTAATAA-T
70436419 TTTTAA-AAT
1 TTTTAATAAT
*
70436428 TTTTATTAA-
1 TTTTAATAAT
*
70436437 TTTTAAGAAT
1 TTTTAATAAT
70436447 TTTTAAT
1 TTTTAAT
70436454 TGTTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
9 13 0.45
10 10 0.34
11 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:70437795 original size:17 final size:17
Alignment explanation
Indices: 70437769--70437812 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
70437759 CAAGACTTAT
70437769 GTAGTGTTTTTAATTAA
1 GTAGTGTTTTTAATTAA
*
70437786 GTAGTATTTTTAATTAA
1 GTAGTGTTTTTAATTAA
70437803 GTAGTGTTTT
1 GTAGTGTTTT
70437813 AAGACATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
GTAGTGTTTTTAATTAA
Found at i:70452618 original size:37 final size:36
Alignment explanation
Indices: 70452522--70452631 Score: 102
Period size: 37 Copynumber: 3.0 Consensus size: 36
70452512 TACAAGATAA
* *
70452522 AAATTAAATTAA-ATTCAA-TATTAAGATAATCACTTT
1 AAATTAAATTAATATTAAACTATTAAGATAATTA--TT
* *
70452558 AATCTTAAATTAATA-AAATACTATTAAGATAATTATT
1 AA-ATTAAATTAATATTAA-ACTATTAAGATAATTATT
*
70452595 AAATTAAATTTAATATTAAACTATTAAAATAA-TATT
1 AAATTAAA-TTAATATTAAACTATTAAGATAATTATT
70452631 A
1 A
70452632 TTTTTGGAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
36 12 0.20
37 32 0.52
38 4 0.07
39 13 0.21
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (36 bp):
AAATTAAATTAATATTAAACTATTAAGATAATTATT
Found at i:70462268 original size:40 final size:40
Alignment explanation
Indices: 70462185--70462447 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
70462175 GTGAATGCTG
* * * * * *
70462185 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
70462225 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
70462265 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
70462305 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
70462345 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70462385 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70462424 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70462448 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:70462467 original size:79 final size:80
Alignment explanation
Indices: 70462224--70462482 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
70462214 AAGTGAATAT
* * * * * *
70462224 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
70462288 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
70462304 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
70462369 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
70462384 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
70462448 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
70462463 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
70462483 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:70484941 original size:46 final size:46
Alignment explanation
Indices: 70484891--70485019 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
70484881 TGGTTAAGCA
*
70484891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
70484937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
70484983 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70485020 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:70502770 original size:30 final size:30
Alignment explanation
Indices: 70502736--70502836 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
70502726 AGCTCACTCC
*
70502736 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCATTTTCAGCTCACGAGCTAAACCT
** * * * * *
70502766 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCATTTTCAGCTCACGAGCTAAACCT
* * *
70502796 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTC-ATTTTCAGCTCACGAGCTAAACCT
70502826 TAGCTCATTTT
1 TAGCTCATTTT
70502837 AGTTTATACT
Statistics
Matches: 51, Mismatches: 19, Indels: 3
0.70 0.26 0.04
Matches are distributed among these distances:
29 4 0.08
30 44 0.86
31 3 0.06
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (30 bp):
TAGCTCATTTTCAGCTCACGAGCTAAACCT
Found at i:70503257 original size:13 final size:13
Alignment explanation
Indices: 70503239--70503263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70503229 GTATTGATCA
70503239 TGTGTTCACACCT
1 TGTGTTCACACCT
70503252 TGTGTTCACACC
1 TGTGTTCACACC
70503264 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:70504232 original size:10 final size:10
Alignment explanation
Indices: 70504209--70504264 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
70504199 AAAGTATATT
*
70504209 AAAAAAATCCA
1 AAAAAAAT-AA
70504220 AAAAAAATAA
1 AAAAAAATAA
70504230 AAAAAAA-AGA
1 AAAAAAATA-A
* **
70504240 AAAAGAATTC
1 AAAAAAATAA
70504250 AAAAAAATAA
1 AAAAAAATAA
70504260 AAAAA
1 AAAAA
70504265 GAGGTGTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
9 1 0.03
10 27 0.75
11 8 0.22
ACGTcount: A:0.82, C:0.05, G:0.04, T:0.09
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:70505226 original size:15 final size:14
Alignment explanation
Indices: 70505206--70505251 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 14
70505196 AAGAAATGAA
70505206 AAGAAAAAGCAAAAG
1 AAGAAAAAG-AAAAG
70505221 AAGAAAAAGAAAATG
1 AAGAAAAAGAAAA-G
*
70505236 AAATAAAAAGAAAAG
1 -AAGAAAAAGAAAAG
70505251 A
1 A
70505252 GCGGCAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 5 0.18
15 11 0.39
16 12 0.43
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (14 bp):
AAGAAAAAGAAAAG
Found at i:70505230 original size:31 final size:30
Alignment explanation
Indices: 70505187--70505251 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 30
70505177 TTCTTGTAAC
70505187 AAGAAAACAAAG-AAATGAAAAGAAAAAGCAA
1 AAGAAAACAAAGAAAATG-AAAGAAAAAG-AA
*
70505218 AAGAAGAA-AAAGAAAATGAAATAAAAAGAA
1 AAGAA-AACAAAGAAAATGAAAGAAAAAGAA
70505248 AAGA
1 AAGA
70505252 GCGGCAAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
30 6 0.19
31 18 0.58
32 7 0.23
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.05
Consensus pattern (30 bp):
AAGAAAACAAAGAAAATGAAAGAAAAAGAA
Found at i:70505379 original size:30 final size:29
Alignment explanation
Indices: 70505332--70505410 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 29
70505322 TTGGAAAACA
*
70505332 AAAAAGAAATG-AAAAGAAAATGAGATTG
1 AAAAAGAAATGAAAAAGAAAATGAGAGTG
**
70505360 AAAAAGAGAATGAAAAAGAATTTGAGAGTG
1 AAAAAGA-AATGAAAAAGAAAATGAGAGTG
* *
70505390 AAGAGGAAGATGAAAAAGAAA
1 AAAAAGAA-ATGAAAAAGAAA
70505411 TTGAAACAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 7 0.17
29 5 0.12
30 30 0.71
ACGTcount: A:0.62, C:0.00, G:0.25, T:0.13
Consensus pattern (29 bp):
AAAAAGAAATGAAAAAGAAAATGAGAGTG
Found at i:70510343 original size:10 final size:10
Alignment explanation
Indices: 70510330--70510364 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
70510320 AAGCTCGGTT
70510330 GAGCTCAAAC
1 GAGCTCAAAC
*
70510340 GAGCTGAAAC
1 GAGCTCAAAC
*
70510350 GAGCTCAAAT
1 GAGCTCAAAC
70510360 GAGCT
1 GAGCT
70510365 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:70510373 original size:20 final size:20
Alignment explanation
Indices: 70510327--70510374 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
70510317 AGTAAGCTCG
70510327 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
70510347 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
70510367 GTTGAGCT
1 GTTGAGCT
70510375 GGACGAAGCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:70514377 original size:6 final size:5
Alignment explanation
Indices: 70514353--70514409 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
70514343 AAGAGAAAAT
*
70514353 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGAA AAAGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAG-A AAAGA AA-AGA
70514400 AAAGA AAAGA
1 AAAGA AAAGA
70514410 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 16 0.36
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:70514402 original size:25 final size:25
Alignment explanation
Indices: 70514357--70514405 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
70514347 GAAAATAAAG
70514357 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAAGAAAAA-CAAAAGAAGA
*
70514383 AAAAGAAAAAGAAATA-AAAAGAA
1 AAAAG-AAAAGAAAAACAAAAGAA
70514406 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 5 0.24
27 9 0.43
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAGAAAAACAAAAGAAGA
Found at i:70516026 original size:27 final size:27
Alignment explanation
Indices: 70515996--70516173 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70515986 ATATTGAGTC
* * * *
70515996 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70516023 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70516050 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70516078 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70516105 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70516132 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70516159 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70516174 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70516135 original size:82 final size:81
Alignment explanation
Indices: 70516017--70516172 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70516007 TGCTATATAA
* *
70516017 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70516082 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70516099 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70516163 CACTTAGTGC
65 CACTTAGTGC
70516173 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70524213 original size:27 final size:27
Alignment explanation
Indices: 70524183--70524333 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
70524173 ATATTGAGTC
* * * *
70524183 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70524210 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70524237 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70524265 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
70524292 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70524319 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70524334 GTACAATTTA
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 85 0.79
28 23 0.21
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70524275 original size:55 final size:55
Alignment explanation
Indices: 70524183--70524333 Score: 198
Period size: 55 Copynumber: 2.8 Consensus size: 55
70524173 ATATTGAGTC
* * * *
70524183 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAT
** ** *
70524237 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAT
*
70524292 CGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCT
70524334 GTACAATTTA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 35 0.41
55 50 0.59
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAT
Found at i:70528265 original size:30 final size:30
Alignment explanation
Indices: 70528170--70528266 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
70528160 AGCTCACTCC
* * *
70528170 TAGCTC-ACTTTCAACTCATGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * **
70528200 TAGCTCAACTTTAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
70528230 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
70528260 TAGCTCA
1 TAGCTCA
70528267 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.81
31 8 0.15
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:70531787 original size:26 final size:26
Alignment explanation
Indices: 70531751--70531860 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
70531741 TGATACAAAT
70531751 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
70531777 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
70531803 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
70531829 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
70531855 TGATAA
1 TGATAA
70531861 GGATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:70534595 original size:16 final size:16
Alignment explanation
Indices: 70534565--70534594 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70534555 GTTTACAAAA
70534565 AAAAACAAAGATTTTC
1 AAAAACAAAGATTTTC
70534581 AAAAACAAA-ATTTT
1 AAAAACAAAGATTTT
70534595 TTTTGCGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (16 bp):
AAAAACAAAGATTTTC
Found at i:70535006 original size:10 final size:10
Alignment explanation
Indices: 70534991--70535017 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
70534981 TACTCCTTCA
70534991 AGCTCAAATC
1 AGCTCAAATC
70535001 AGCTCAAATC
1 AGCTCAAATC
70535011 AGCTCAA
1 AGCTCAA
70535018 CTTCAACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:70535039 original size:10 final size:10
Alignment explanation
Indices: 70534991--70535039 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
70534981 TACTCCTTCA
*
70534991 AGCTCAAATC
1 AGCTCAACTC
*
70535001 AGCTCAAATC
1 AGCTCAACTC
70535011 AGCTCAACTTC
1 AGCTCAAC-TC
* *
70535022 AACTCAACTT
1 AGCTCAACTC
70535032 AGCTCAAC
1 AGCTCAAC
70535040 GAGCTCGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 25 0.74
11 9 0.26
ACGTcount: A:0.37, C:0.33, G:0.08, T:0.22
Consensus pattern (10 bp):
AGCTCAACTC
Found at i:70542251 original size:24 final size:24
Alignment explanation
Indices: 70542219--70542383 Score: 224
Period size: 24 Copynumber: 6.9 Consensus size: 24
70542209 TCGGTCAAGG
* *
70542219 AAATTCGCACACATAGTGCCATGC
1 AAATCCGCACACATAGTGCCATTC
* *
70542243 TAACCCGCACACATAGTGCC-TTGC
1 AAATCCGCACACATAGTGCCATT-C
* *
70542267 TAATCCGCACACGTAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
* *
70542291 AAATTCGCACACATAGTGTCATTC
1 AAATCCGCACACATAGTGCCATTC
70542315 AAATCCGCACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
*
70542339 AAATCCGCACACATAGTGCCATTT
1 AAATCCGCACACATAGTGCCATTC
*
70542363 AAATCCACACACATAGTGCCA
1 AAATCCGCACACATAGTGCCA
70542384 ATGTCATTTC
Statistics
Matches: 125, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 1 0.01
24 122 0.98
25 2 0.02
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATTC
Found at i:70544236 original size:31 final size:31
Alignment explanation
Indices: 70544198--70544307 Score: 211
Period size: 31 Copynumber: 3.5 Consensus size: 31
70544188 TTTAACAGTT
*
70544198 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
70544229 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
70544260 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
70544291 ACTGGGCCGAAGCCTTA
1 ACTGGGCCGAAGCCTTA
70544308 CAGTAAACAG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 78 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:70544554 original size:25 final size:25
Alignment explanation
Indices: 70544526--70544595 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
70544516 CTCTTTTAAT
70544526 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
70544551 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
70544576 AACTAGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
70544596 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:70545435 original size:27 final size:27
Alignment explanation
Indices: 70545405--70545469 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
70545395 GGGCATATTC
70545405 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
70545432 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
70545459 GTCTTTTTACC
1 GTCATTTTACC
70545470 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:70545471 original size:26 final size:28
Alignment explanation
Indices: 70545427--70545478 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
70545417 TACAAGGGTA
70545427 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
70545454 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
70545479 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:70545628 original size:56 final size:54
Alignment explanation
Indices: 70545499--70545682 Score: 169
Period size: 54 Copynumber: 3.4 Consensus size: 54
70545489 ATTTCATCCT
* * * * *
70545499 ACAAGGGTGTTTTGGTAA-ATCTACAAACCAAGGGTATTTCAGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCTGTAATTTTGTAA
* * *
70545552 ACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAA
1 A-CAAGGGTATTT-TGGTAATTTTTACAAA-TCAAGGGTATTTCTGTAATTTTGTAA
* * * **
70545608 ATCAGGGGTATTTTGGTAA-TTTTACAAATTAGGGGTATTT-TGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCT-GTAATTTTGTAA
70545662 ACTAAGGGTATTTTGGTAATT
1 AC-AAGGGTATTTTGGTAATT
70545683 CTATCCTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
53 3 0.03
54 48 0.46
55 17 0.16
56 37 0.35
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
ACAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCTGTAATTTTGTAA
Found at i:70545636 original size:27 final size:27
Alignment explanation
Indices: 70545500--70545682 Score: 147
Period size: 27 Copynumber: 6.7 Consensus size: 27
70545490 TTTCATCCTA
* * * *
70545500 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
70545527 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
70545554 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
**
70545583 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
70545610 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
70545637 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
70545663 CTAAGGGTATTTTGGTAATT
1 C-AAGGGTATTTTGGTAATT
70545683 CTATCCTACA
Statistics
Matches: 128, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.77
28 14 0.11
29 15 0.12
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:70545697 original size:27 final size:26
Alignment explanation
Indices: 70545586--70545724 Score: 118
Period size: 27 Copynumber: 5.2 Consensus size: 26
70545576 AGAAAGTCAA
**
70545586 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAA-CAG
*
70545613 GGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAA-CAG
*
70545640 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAAC-AG
* **
70545667 GGGTATTTTGGTAATTCTATCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAG
** * * *
70545694 GGGTATTTCAGTAATTTCACAATCAA
1 GGGTATTTTGGTAATTTTACAAACAG
70545720 GGGTA
1 GGGTA
70545725 AAACGGTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
26 9 0.10
27 80 0.87
28 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:70545752 original size:27 final size:27
Alignment explanation
Indices: 70545714--70545886 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
70545704 GTAATTTCAC
* * *
70545714 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
70545741 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
70545768 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
70545795 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
70545822 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
70545849 AATCGAGGGTAAAATGGTAATTATGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
70545876 AGTCGGGGGTA
1 AATCGAGGGTA
70545887 CTTTGGTTAT
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:70547179 original size:17 final size:17
Alignment explanation
Indices: 70547157--70547189 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70547147 CCCACTTAAT
*
70547157 ATATTATAACTTATTTA
1 ATATTATAACATATTTA
70547174 ATATTATAACATATTT
1 ATATTATAACATATTT
70547190 CAATTATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATTATAACATATTTA
Found at i:70549902 original size:12 final size:12
Alignment explanation
Indices: 70549885--70549909 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70549875 TTTGAGTAAT
70549885 GAAACGGAATAA
1 GAAACGGAATAA
70549897 GAAACGGAATAA
1 GAAACGGAATAA
70549909 G
1 G
70549910 CATTTAATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.28, T:0.08
Consensus pattern (12 bp):
GAAACGGAATAA
Done.