Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 211 of 320
Found at i:70550305 original size:40 final size:40
Alignment explanation
Indices: 70550222--70550441 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
70550212 ACCCAAGTAT
* * * *
70550222 CTTCGGGATTTAG-CCGGATATAGCCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * *
70550260 CTTCGGGTTTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
70550300 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
70550340 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
70550380 CTTC-GGATTTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
70550420 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
70550442 CATTCGAATA
Statistics
Matches: 154, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 12 0.08
39 19 0.12
40 119 0.77
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:70554889 original size:27 final size:27
Alignment explanation
Indices: 70554859--70555198 Score: 380
Period size: 27 Copynumber: 12.6 Consensus size: 27
70554849 TTAGTTTACC
70554859 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
70554886 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70554913 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
70554940 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
70554967 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
70554994 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70555021 AAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
70555048 AAATT-CCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
70555074 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * *
70555101 AAATTACCAAAATAAACCTGATTTATG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
70555128 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
70555155 AAATTATGGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
70555182 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
70555199 TTAATTTATA
Statistics
Matches: 263, Mismatches: 47, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 28 0.11
27 233 0.89
28 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:70555267 original size:27 final size:27
Alignment explanation
Indices: 70555237--70555377 Score: 120
Period size: 27 Copynumber: 5.2 Consensus size: 27
70555227 CGATTTACAA
**
70555237 AATTACCGAAACACGTCTATAGGGTAG
1 AATTACCGAAACACCCCTATAGGGTAG
*
70555264 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAACACCCCTATAGGGTAG
* * * * *
70555291 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAACACCCCTATAGGGTAG
** * * *
70555318 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAACACCCCTATAGGGTAG
** * * *
70555345 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAACACCCCTATAGGGTAG
70555372 AATTAC
1 AATTAC
70555378 TGAGATACCT
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAAACACCCCTATAGGGTAG
Found at i:70555378 original size:27 final size:27
Alignment explanation
Indices: 70555256--70555386 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
70555246 AACACGTCTA
* *
70555256 TAGGGTAGAATTACCGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTG
* *
70555283 TAGGGTAGAATTA-TCGCAATACCCTTG
1 TAGGGTAGAATTACT-GAAATACCCCTG
* *
70555310 TAGGGTAGAATTATTGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCCTG
*
70555337 TAGGGTAGAATTACTAAAATACCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTG
* *
70555364 TAGGGTGGAATTACTGAGATACC
1 TAGGGTAGAATTACTGAAATACC
70555387 TTTTGGGGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
27 90 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTG
Found at i:70555883 original size:22 final size:22
Alignment explanation
Indices: 70555831--70555895 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
70555821 TTAAAGCCTT
* *
70555831 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
70555853 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
70555875 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
70555896 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:70556092 original size:26 final size:27
Alignment explanation
Indices: 70556054--70556127 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
70556044 ATTCTGTTAA
*
70556054 GTGGCT-TTGCCACATTATCTGT-TCTG
1 GTGGCTCTT-CCACAATATCTGTATCTG
70556080 GTGGCTCTTCCACAATATCTGTATCTG
1 GTGGCTCTTCCACAATATCTGTATCTG
*
70556107 GTGACTCTGT-CACAATATCTG
1 GTGGCTCT-TCCACAATATCTG
70556128 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 18 0.42
27 24 0.56
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTCTTCCACAATATCTGTATCTG
Found at i:70556301 original size:6 final size:6
Alignment explanation
Indices: 70556267--70556435 Score: 132
Period size: 6 Copynumber: 27.3 Consensus size: 6
70556257 TTGCATTCAC
* * * *
70556267 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATACTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
70556317 -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
70556367 ATTCTG ATTCTG ATTCTA ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
70556416 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
70556436 AATGTTTCTT
Statistics
Matches: 132, Mismatches: 16, Indels: 30
0.74 0.09 0.17
Matches are distributed among these distances:
5 8 0.06
6 102 0.77
7 18 0.14
8 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70556313 original size:31 final size:31
Alignment explanation
Indices: 70556267--70556378 Score: 197
Period size: 31 Copynumber: 3.6 Consensus size: 31
70556257 TTGCATTCAC
70556267 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
70556299 ATACTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
70556330 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
70556361 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
70556379 ATTCTAATTC
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
31 71 0.92
32 6 0.08
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:70556374 original size:43 final size:43
Alignment explanation
Indices: 70556321--70556433 Score: 172
Period size: 43 Copynumber: 2.6 Consensus size: 43
70556311 ATTCTGTTAC
* * * *
70556321 CTGATACTGATTCTGATTTTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATACTGATT
*
70556364 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATACTGATT
*
70556407 CTGATTCTGATTCTGATTCTAGTTCTG
1 CTGATTCTGATTCTGATTCTAATTCTG
70556434 ATAATGTTTC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (43 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATACTGATT
Found at i:70556399 original size:37 final size:36
Alignment explanation
Indices: 70556290--70556426 Score: 161
Period size: 37 Copynumber: 3.7 Consensus size: 36
70556280 ATTCTGTTAC
* * * *
70556290 CTGATACTGATACTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGATTCTGATTCTG-TACCTGATT
*
70556327 CTGATTCTGATTTTGATTCTG-TTACCTGATA-CTGATT
1 CTGATTCTGATTCTGATTCTGATT--CTG-TACCTGATT
*
70556364 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTGATTCTGT-ACCTGATT
70556401 CTGATTCTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCTGATTCT
70556427 AGTTCTGATA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
35 1 0.01
36 6 0.07
37 72 0.84
38 7 0.08
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (36 bp):
CTGATTCTGATTCTGATTCTGATTCTGTACCTGATT
Found at i:70559408 original size:119 final size:120
Alignment explanation
Indices: 70559234--70559473 Score: 419
Period size: 119 Copynumber: 2.0 Consensus size: 120
70559224 ACAAATGCGG
**
70559234 CCCTAATGTCTAGGCCGGGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
1 CCCTAATGTCTAGGCCAAGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
70559299 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
66 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
* * *
70559354 CCCTAATGTCTAGGCCAAG-TTGGGGTGTTACAAATCATATATCTTGAGTGTACTACTTGGGCCT
1 CCCTAATGTCTAGGCCAAGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
*
70559418 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATGAAAAT
66 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
70559473 C
1 C
70559474 TTGAGATAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 97 0.85
120 17 0.15
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (120 bp):
CCCTAATGTCTAGGCCAAGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
Found at i:70564055 original size:11 final size:10
Alignment explanation
Indices: 70564033--70564074 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
70564023 AAATGATGAT
70564033 GAAAAA-AAA
1 GAAAAAGAAA
70564042 GAAAAGAGAAA
1 GAAAA-AGAAA
70564053 GAAAAAGAAA
1 GAAAAAGAAA
*
70564063 AAAAAAGGAAA
1 GAAAAA-GAAA
70564074 G
1 G
70564075 GCTCTCATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 5 0.18
10 11 0.39
11 12 0.43
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:70564073 original size:17 final size:17
Alignment explanation
Indices: 70564037--70564069 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70564027 GATGATGAAA
*
70564037 AAAAAGAAAAGAGAAAG
1 AAAAAGAAAAGAAAAAG
70564054 AAAAAGAAAA-AAAAAG
1 AAAAAGAAAAGAAAAAG
70564070 GAAAGGCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAGAAAAAG
Found at i:70565386 original size:40 final size:40
Alignment explanation
Indices: 70565331--70565430 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
70565321 ATGATAACCG
* *
70565331 GGCTAAGTCCCGAAGGCGTTTGCGCTAATGACTAGT-TCCA
1 GGCTAAGTCCCGAAGGCATTTGCGCGAATGACTA-TATCCA
* * * *
70565371 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAATGACTATATCCA
*
70565411 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
70565431 CGAGCGAGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
39 1 0.02
40 51 0.98
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGCGCGAATGACTATATCCA
Found at i:70565438 original size:40 final size:40
Alignment explanation
Indices: 70565328--70565465 Score: 113
Period size: 40 Copynumber: 3.5 Consensus size: 40
70565318 TGGATGATAA
* * * * *
70565328 CCGGGCTAAGTCCCGAAGGCGTTTGCGCTAATGA-CTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGT-ATCTA-TAT
* * *
70565368 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAT-CTATAT
*
70565408 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTATCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTATCTATAT
* * *
70565448 -CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70565466 TACTTGGCTT
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
39 15 0.19
40 65 0.80
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTATCTATAT
Found at i:70568445 original size:43 final size:42
Alignment explanation
Indices: 70568395--70568493 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 42
70568385 TCCCATACGT
*
70568395 GGTCTTACATGTAATCA-ACTATCGATG-CAACTGTCCCAGACAG
1 GGTCTTACATGTAATCATA-TA-CGATGCCAA-TGTCCCAGACAC
* * *
70568438 GGTCTTACACGAAATCATATACGATGCCGATGTCCCAGACAC
1 GGTCTTACATGTAATCATATACGATGCCAATGTCCCAGACAC
70568480 GGTCTTACATGTAA
1 GGTCTTACATGTAA
70568494 ACCACAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
42 28 0.58
43 19 0.40
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
GGTCTTACATGTAATCATATACGATGCCAATGTCCCAGACAC
Found at i:70573237 original size:64 final size:64
Alignment explanation
Indices: 70573156--70573339 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
70573146 AGACATTATG
* * * *
70573156 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACCAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70573220 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70573285 AA
63 AA
* * * * *
70573287 AT-TGGCTAGGTCACATGGGCGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70573340 CAAACTATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 20 0.21
65 7 0.07
66 17 0.18
67 31 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70577624 original size:68 final size:66
Alignment explanation
Indices: 70577552--70577723 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
70577542 CATCATGTGT
* * * *
70577552 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCACATGCGTGATACTAGTGAAGGACACCA
70577615 TGTAG
62 TGTAG
** * *
70577620 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCACATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGATACTA-GTGAAGGACACCATGT
70577685 AG
65 AG
* * *
70577687 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATG
70577724 GGCGGTACTG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 18 0.20
67 32 0.36
68 13 0.14
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGATACTAGTGAAGGACACCATGTA
G
Found at i:70581371 original size:19 final size:19
Alignment explanation
Indices: 70581347--70581386 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
70581337 TTTCATTCTC
*
70581347 AAACATGGTATACAATTCA
1 AAACATAGTATACAATTCA
70581366 AAACATAGTATACAATTCA
1 AAACATAGTATACAATTCA
70581385 AA
1 AA
70581387 CGTACCTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (19 bp):
AAACATAGTATACAATTCA
Found at i:70581627 original size:44 final size:43
Alignment explanation
Indices: 70581488--70581651 Score: 153
Period size: 43 Copynumber: 3.8 Consensus size: 43
70581478 CAGAAAGCTC
* * * *
70581488 ATACAATGCCAACGTCCTAGACGTGGCCTTACATGT-AATCAA
1 ATACGATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAA
* *
70581530 ATACCGATGCC-ACTATCCCAGA--TAGGATCTTACAC-AAAATCAA
1 ATA-CGATGCCAAC-ATCCTAGACGT-GG-TCTTACACGTAAATCAA
70581573 ATACGATGCCAACATCCTAGACGTGGTCTTACACGTAAATCATA
1 ATACGATGCCAACATCCTAGACGTGGTCTTACACGTAAATCA-A
*
70581617 AGT-CGATGCCAACGT-CTCAGACGTGGTCTTACACG
1 A-TACGATGCCAACATCCT-AGACGTGGTCTTACACG
70581652 ATAACACATA
Statistics
Matches: 101, Mismatches: 9, Indels: 22
0.77 0.07 0.17
Matches are distributed among these distances:
41 1 0.01
42 29 0.29
43 39 0.39
44 31 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
ATACGATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAA
Found at i:70583702 original size:15 final size:15
Alignment explanation
Indices: 70583682--70583712 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70583672 AATTATGAAA
70583682 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
70583697 GATATGTTTTGTATT
1 GATATGTTTTGGATT
70583712 G
1 G
70583713 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:70584369 original size:55 final size:56
Alignment explanation
Indices: 70584285--70584393 Score: 184
Period size: 55 Copynumber: 2.0 Consensus size: 56
70584275 CATGGCTTCG
70584285 ATATATGTGTACGAGAAAGACCACGTTTAAT-CATTGGCATCGATATGTGATTTCA
1 ATATATGTGTACGAGAAAGACCACGTTTAATACATTGGCATCGATATGTGATTTCA
* * *
70584340 ATATATGTGTGCGAGTAAGACCACGTTTAATACTTTGGCATCGATATGTGATTT
1 ATATATGTGTACGAGAAAGACCACGTTTAATACATTGGCATCGATATGTGATTT
70584394 TGATATGTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
55 29 0.58
56 21 0.42
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (56 bp):
ATATATGTGTACGAGAAAGACCACGTTTAATACATTGGCATCGATATGTGATTTCA
Found at i:70584400 original size:13 final size:13
Alignment explanation
Indices: 70584382--70584406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70584372 CTTTGGCATC
70584382 GATATGTGATTTT
1 GATATGTGATTTT
70584395 GATATGTGATTT
1 GATATGTGATTT
70584407 GTAACATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (13 bp):
GATATGTGATTTT
Found at i:70591722 original size:33 final size:33
Alignment explanation
Indices: 70591680--70591743 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
70591670 TTAATAGATG
70591680 AAAGTATCATTGGTCTGTTTGGGTTAAATTCGA
1 AAAGTATCATTGGTCTGTTTGGGTTAAATTCGA
70591713 AAAGTATCATTGGTCTGTTTGGGTTAAATTC
1 AAAGTATCATTGGTCTGTTTGGGTTAAATTC
70591744 AACATTGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (33 bp):
AAAGTATCATTGGTCTGTTTGGGTTAAATTCGA
Found at i:70593985 original size:27 final size:27
Alignment explanation
Indices: 70593963--70594186 Score: 340
Period size: 27 Copynumber: 8.3 Consensus size: 27
70593953 CAATTTGTAA
* *
70593963 AATTACCGTTTTACCCTTGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
*
70593990 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
* *
70594017 AATTATCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
70594044 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
*
70594071 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
* *
70594098 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
* * *
70594125 AATTACCATTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTATAG
*
70594152 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
70594179 AATTACCA
1 AATTACCA
70594187 AAATACCCTT
Statistics
Matches: 181, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTATAG
Found at i:70594029 original size:54 final size:54
Alignment explanation
Indices: 70593963--70594213 Score: 340
Period size: 54 Copynumber: 4.6 Consensus size: 54
70593953 CAATTTGTAA
* * *
70593963 AATTACCGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* *
70594017 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* * *
70594071 AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* * * *
70594125 AATTACCATTTTACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
*** * * *
70594179 AATTACCAAAATACCCTTGGTTTACAAAATTACCA
1 AATTACCATTTTACCCTCGATTTACAGAATTACCA
70594214 AAATATCCTT
Statistics
Matches: 173, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 173 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
Found at i:70594066 original size:81 final size:81
Alignment explanation
Indices: 70593963--70594213 Score: 358
Period size: 81 Copynumber: 3.1 Consensus size: 81
70593953 CAATTTGTAA
* * * *
70593963 AATTACCGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCATTT
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
70594028 TACCCTCGATTTACAG
66 TACCCTCGATTTACAG
* *
70594044 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
70594109 TACCCTCGATTTACAG
66 TACCCTCGATTTACAG
* * * * ***
70594125 AATTACCATTTTACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCAAAA
1 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* * *
70594190 TACCCTTGGTTTACAA
66 TACCCTCGATTTACAG
70594206 AATTACCA
1 AATTACCA
70594214 AAATATCCTT
Statistics
Matches: 152, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 152 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
TACCCTCGATTTACAG
Found at i:70594193 original size:27 final size:27
Alignment explanation
Indices: 70593974--70594363 Score: 191
Period size: 27 Copynumber: 14.4 Consensus size: 27
70593964 ATTACCGTTT
* ***
70593974 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCAAAA
* * ***
70594001 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCAAAA
* ***
70594028 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCAAAA
****
70594055 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCAAAA
****
70594082 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCAAAA
* ***
70594109 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCAAAA
* * * * ***
70594136 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCAAAA
70594163 TACCCTCGATTTATAGAATTACCAAAA
1 TACCCTCGATTTATAGAATTACCAAAA
* * * *
70594190 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAGAATTACCAAAA
* * * *
70594217 TATCCTTGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAGAATTACCAAAA
* * * *
70594244 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTATAGAATTACCAAAA
* * *
70594271 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAGAATTACCAAAA
* *
70594298 TACCCCTGGCTTGTA-A-AATTACCAAAA
1 TA-CCCTCGATT-TATAGAATTACCAAAA
* * *
70594325 TACCCAT-GATTTGT-GAAATTATCGAAA
1 TACCC-TCGATTTATAG-AATTACCAAAA
*
70594352 TACTCTCGATTT
1 TACCCTCGATTT
70594364 GTAAAATATC
Statistics
Matches: 308, Mismatches: 43, Indels: 24
0.82 0.11 0.06
Matches are distributed among these distances:
25 1 0.00
26 10 0.03
27 288 0.94
28 8 0.03
29 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCAAAA
Found at i:70594237 original size:54 final size:54
Alignment explanation
Indices: 70594179--70594411 Score: 204
Period size: 54 Copynumber: 4.3 Consensus size: 54
70594169 CGATTTATAG
* ** * *
70594179 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATATCCTTGATCAGTAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAA
* * * **
70594233 AATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAA
* * ** *
70594287 AATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCATGATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAA
* * * * * * *
70594341 AATTATCGAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCTG-T-AGGGTAG
1 AATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTGATCA--GTAA
*
70594394 AATTACCGAAATACCCCT
1 AATTACCAAAATACCCCT
70594412 ATAAGGTAGA
Statistics
Matches: 146, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
52 1 0.01
53 30 0.21
54 115 0.79
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAA
Found at i:70594338 original size:81 final size:81
Alignment explanation
Indices: 70594170--70594354 Score: 212
Period size: 81 Copynumber: 2.3 Consensus size: 81
70594160 TTTTACCCTC
* * * * *
70594170 GATTTATAGAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATATCCTTGATCAGTAAAA
1 GATTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTGGATCAGTAAAA
*
70594235 TTACCAAAATACCCCT
66 TTACCAAAATACCCAT
* ** * *
70594251 -AGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCT-TGTAA
1 GA-TTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATA-CCCTGGATCAGTAA
70594314 AATTACCAAAATACCCAT
64 AATTACCAAAATACCCAT
* * *
70594332 GATTTGTGAAATTATCGAAATAC
1 GATTTGTAAAATTACCAAAATAC
70594355 TCTCGATTTG
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 1 0.01
81 79 0.92
82 6 0.07
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (81 bp):
GATTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTGGATCAGTAAAA
TTACCAAAATACCCAT
Found at i:70594365 original size:81 final size:80
Alignment explanation
Indices: 70594229--70594385 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 80
70594219 TCCTTGATCA
* *
70594229 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACC
1 GTAAAATTACCAAAATACCCATAGTTTGTAAAATTACTAAAATACCCCTGATTTGTAAAA-TACC
70594294 AAAATACCCCTGGCTT
65 AAAATACCCCTGGCTT
* * *
70594310 GTAAAATTACCAAAATACCCAT-GATTTGTGAAATTA-TCGAAATA-CTCTCGATTTGTAAAATA
1 GTAAAATTACCAAAATACCCATAG-TTTGTAAAATTACT-AAAATACCCCT-GATTTGTAAAATA
* *
70594372 TCGAAATACCCCTG
63 CCAAAATACCCCTG
70594386 TAGGGTAGAA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
80 19 0.29
81 47 0.71
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCATAGTTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATACCA
AAATACCCCTGGCTT
Found at i:70594411 original size:27 final size:27
Alignment explanation
Indices: 70594373--70594563 Score: 256
Period size: 27 Copynumber: 7.0 Consensus size: 27
70594363 TGTAAAATAT
70594373 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
70594400 CGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70594427 CGAAATACACCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
70594454 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * * *
70594481 TGAAATACCCTTATAGGGGAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
70594508 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
70594535 CGAGATACCCTTGTGGGGTAAAAATTAC
1 CGAAATACCCCTGTAGGGT-AGAATTAC
70594563 C
1 C
70594564 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
27 133 0.94
28 8 0.06
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:70594813 original size:25 final size:25
Alignment explanation
Indices: 70594766--70594859 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 25
70594756 AGGAAGTGCT
70594766 AAAAGGG-TTATG-CCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
* *
70594790 AGAAGGGCTTTGCCGCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
70594815 AAAAGGGCTTTTCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
70594840 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
70594860 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
24 8 0.13
25 52 0.87
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:70594872 original size:24 final size:25
Alignment explanation
Indices: 70594778--70594872 Score: 81
Period size: 25 Copynumber: 3.8 Consensus size: 25
70594768 AAGGGTTATG
* *
70594778 CCCAGTTTACCGAGAAG-GGCTTTGC
1 CCCAGTTTATC-AAAAGAGGCTTTGC
* * *
70594803 CGCAGTTTACCGAAAAG-GGCTTTTC
1 CCCAGTTTATC-AAAAGAGGCTTTGC
70594828 CCCAGTTTATCAAAA-AGGGCTTTGC
1 CCCAGTTTATCAAAAGA-GGCTTTGC
*
70594853 CCCAG-TTATTAAAAGAGGCT
1 CCCAGTTTATCAAAAGAGGCT
70594873 AGGTCTCCAG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
24 16 0.27
25 44 0.73
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
CCCAGTTTATCAAAAGAGGCTTTGC
Found at i:70600478 original size:27 final size:27
Alignment explanation
Indices: 70600448--70600625 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
70600438 ATATCGAGTC
* * * *
70600448 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
70600475 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70600502 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70600530 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70600557 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70600584 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70600611 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70600626 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70600587 original size:82 final size:81
Alignment explanation
Indices: 70600469--70600624 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
70600459 TGCTATATAA
*
70600469 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70600534 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70600551 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70600615 CACTTAGTGC
65 CACTTAGTGC
70600625 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70608539 original size:27 final size:27
Alignment explanation
Indices: 70608509--70608686 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
70608499 ATATCGAGTC
* * * *
70608509 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
70608536 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70608563 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70608591 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70608618 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70608645 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70608672 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70608687 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70608648 original size:82 final size:81
Alignment explanation
Indices: 70608530--70608685 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
70608520 TGCTATATAA
*
70608530 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70608595 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70608612 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70608676 CACTTAGTGC
65 CACTTAGTGC
70608686 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70621241 original size:20 final size:20
Alignment explanation
Indices: 70621218--70621309 Score: 103
Period size: 20 Copynumber: 4.6 Consensus size: 20
70621208 TGATATTTAA
70621218 GGCTTTGTGCCACTATTGAT
1 GGCTTTGTGCCACTATTGAT
** *
70621238 GGCTTTGTGCCGTTATTGAC
1 GGCTTTGTGCCACTATTGAT
*
70621258 AGCTTTGTGCCACTATTGAT
1 GGCTTTGTGCCACTATTGAT
* * * *
70621278 GGCTTGGTACCGCCATTGAT
1 GGCTTTGTGCCACTATTGAT
*
70621298 GGCTTCGTGCCA
1 GGCTTTGTGCCA
70621310 TATACTGATA
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (20 bp):
GGCTTTGTGCCACTATTGAT
Found at i:70621308 original size:40 final size:40
Alignment explanation
Indices: 70621218--70621309 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
70621208 TGATATTTAA
* * **
70621218 GGCTTTGTGCCACTATTGATGGCTTTGTGCCGTTATTGAC
1 GGCTTTGTGCCACTATTGATGGCTTGGTACCGCCATTGAC
* *
70621258 AGCTTTGTGCCACTATTGATGGCTTGGTACCGCCATTGAT
1 GGCTTTGTGCCACTATTGATGGCTTGGTACCGCCATTGAC
*
70621298 GGCTTCGTGCCA
1 GGCTTTGTGCCA
70621310 TATACTGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (40 bp):
GGCTTTGTGCCACTATTGATGGCTTGGTACCGCCATTGAC
Found at i:70621372 original size:26 final size:26
Alignment explanation
Indices: 70621343--70621394 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
70621333 TGCGTTACTG
*
70621343 TTACTAGCAACTTTTCTACAATATTA
1 TTACTAGCAACTTTGCTACAATATTA
* * *
70621369 TTACTGGCAGCTTTGCTACGATATTA
1 TTACTAGCAACTTTGCTACAATATTA
70621395 GTGTATTGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (26 bp):
TTACTAGCAACTTTGCTACAATATTA
Found at i:70621965 original size:20 final size:20
Alignment explanation
Indices: 70621940--70621978 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70621930 GTTTAAAAAG
* *
70621940 TAATGACAATTTAAAATGAA
1 TAATGAAAATCTAAAATGAA
70621960 TAATGAAAATCTAAAATGA
1 TAATGAAAATCTAAAATGA
70621979 TTTGAGATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.28
Consensus pattern (20 bp):
TAATGAAAATCTAAAATGAA
Found at i:70626906 original size:10 final size:10
Alignment explanation
Indices: 70626891--70626927 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
70626881 ATACAAGTTA
70626891 AAAAAAATCG
1 AAAAAAATCG
*
70626901 AAAAAAATTCA
1 AAAAAAA-TCG
70626912 AAAAAAATCG
1 AAAAAAATCG
70626922 AAAAAA
1 AAAAAA
70626928 GTGATTTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.76, C:0.08, G:0.05, T:0.11
Consensus pattern (10 bp):
AAAAAAATCG
Found at i:70626906 original size:11 final size:11
Alignment explanation
Indices: 70626890--70626927 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
70626880 TATACAAGTT
70626890 AAAAAAAATCG
1 AAAAAAAATCG
*
70626901 AAAAAAATTC-
1 AAAAAAAATCG
70626911 AAAAAAAATCG
1 AAAAAAAATCG
70626922 AAAAAA
1 AAAAAA
70626928 GTGATTTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.76, C:0.08, G:0.05, T:0.11
Consensus pattern (11 bp):
AAAAAAAATCG
Found at i:70634843 original size:30 final size:29
Alignment explanation
Indices: 70634788--70634851 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
70634778 TTTTTCAATT
* *
70634788 TCTTTTTCACTCTCAAATTTCTTTTCGTTC
1 TCTTTTTCAATCTCAAATCTCTTTTC-TTC
*
70634818 TCTTTTTCAATCTC-AATCTCATTTTCTTT
1 TCTTTTTCAATCTCAAATCTC-TTTTCTTC
70634847 TCTTT
1 TCTTT
70634852 GTTTTTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (29 bp):
TCTTTTTCAATCTCAAATCTCTTTTCTTC
Found at i:70634866 original size:19 final size:20
Alignment explanation
Indices: 70634842--70634882 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
70634832 AATCTCATTT
70634842 TCTTTTCTTTGTTT-TTCTC
1 TCTTTTCTTTGTTTCTTCTC
70634861 TCTTTTCTTTGTTTCTTCTC
1 TCTTTTCTTTGTTTCTTCTC
70634881 TC
1 TC
70634883 GATTTCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTTTCTTTGTTTCTTCTC
Found at i:70637009 original size:13 final size:13
Alignment explanation
Indices: 70636991--70637015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70636981 TAACCTACAA
70636991 AATTAAATAACAT
1 AATTAAATAACAT
70637004 AATTAAATAACA
1 AATTAAATAACA
70637016 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:70637255 original size:10 final size:10
Alignment explanation
Indices: 70637240--70637285 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
70637230 AAAAAGGAAT
70637240 GAGCTAAAAC
1 GAGCTAAAAC
*
70637250 GAGCTAAATTC
1 GAGCTAAA-AC
*
70637261 GAGCTCAAAC
1 GAGCTAAAAC
70637271 GAGCTAAAAC
1 GAGCTAAAAC
70637281 GAGCT
1 GAGCT
70637286 CAAGTTAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.15
Consensus pattern (10 bp):
GAGCTAAAAC
Found at i:70637270 original size:21 final size:20
Alignment explanation
Indices: 70637240--70637288 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
70637230 AAAAAGGAAT
* *
70637240 GAGCTAAAACGAGCTAAATTC
1 GAGCTCAAACGAGCTAAA-AC
70637261 GAGCTCAAACGAGCTAAAAC
1 GAGCTCAAACGAGCTAAAAC
70637281 GAGCTCAA
1 GAGCTCAA
70637289 GTTAGCTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.43, C:0.22, G:0.20, T:0.14
Consensus pattern (20 bp):
GAGCTCAAACGAGCTAAAAC
Found at i:70641609 original size:34 final size:34
Alignment explanation
Indices: 70641566--70641635 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
70641556 CGCATAGAAG
70641566 TCACGCACTAACCCCTCATCCACACTAGGTCTCT
1 TCACGCACTAACCCCTCATCCACACTAGGTCTCT
70641600 TCACGCACTAACCCCTCATCCACACTAGGTCTCT
1 TCACGCACTAACCCCTCATCCACACTAGGTCTCT
70641634 TC
1 TC
70641636 TCACAAAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.23, C:0.44, G:0.09, T:0.24
Consensus pattern (34 bp):
TCACGCACTAACCCCTCATCCACACTAGGTCTCT
Found at i:70641625 original size:17 final size:17
Alignment explanation
Indices: 70641571--70641626 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
70641561 AGAAGTCACG
70641571 CACTAACCCCTCATCCA
1 CACTAACCCCTCATCCA
*** * *
70641588 CACT-AGGTCTCTTCACG
1 CACTAACCCCTCATC-CA
70641605 CACTAACCCCTCATCCA
1 CACTAACCCCTCATCCA
70641622 CACTA
1 CACTA
70641627 GGTCTCTTCT
Statistics
Matches: 27, Mismatches: 10, Indels: 4
0.66 0.24 0.10
Matches are distributed among these distances:
16 6 0.22
17 15 0.56
18 6 0.22
ACGTcount: A:0.27, C:0.46, G:0.05, T:0.21
Consensus pattern (17 bp):
CACTAACCCCTCATCCA
Found at i:70647112 original size:43 final size:43
Alignment explanation
Indices: 70647060--70647158 Score: 180
Period size: 43 Copynumber: 2.3 Consensus size: 43
70647050 ATCTATTGGT
* *
70647060 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAGTTAATTTGC
1 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
70647103 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
1 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
70647146 ACTAAGTGTGCGA
1 ACTAAGTGTGCGA
70647159 GTTTATTGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (43 bp):
ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
Found at i:70652682 original size:28 final size:27
Alignment explanation
Indices: 70652639--70652743 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
70652629 CTGCCACGAT
* * *
70652639 AGATAATATGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
70652666 AAATAATGGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
70652693 AGATATATGTGGTAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
70652720 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
70652744 GACGCTTCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 49 0.74
28 16 0.24
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:70654173 original size:25 final size:24
Alignment explanation
Indices: 70654137--70654196 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 24
70654127 CCAACACTGC
*
70654137 TCTCCCTAATCAGCTCCTAAAACT
1 TCTCCCTTATCAGCTCCTAAAACT
* *
70654161 TCTCCCCTTATCATCTCCTAAATCT
1 TCT-CCCTTATCAGCTCCTAAAACT
70654186 TCTCCCTTATC
1 TCTCCCTTATC
70654197 CCCTCCTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 11 0.34
25 21 0.66
ACGTcount: A:0.22, C:0.40, G:0.02, T:0.37
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAAACT
Found at i:70654202 original size:24 final size:25
Alignment explanation
Indices: 70654140--70654203 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
70654130 ACACTGCTCT
* *
70654140 CCCTAATCAGCTCCTAAAACTTCTC
1 CCCTTATCACCTCCTAAAACTTCTC
* *
70654165 CCCTTATCATCTCCTAAATCTTCT-
1 CCCTTATCACCTCCTAAAACTTCTC
*
70654189 CCCTTATCCCCTCCT
1 CCCTTATCACCTCCT
70654204 TACTCAATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 13 0.38
25 21 0.62
ACGTcount: A:0.20, C:0.44, G:0.02, T:0.34
Consensus pattern (25 bp):
CCCTTATCACCTCCTAAAACTTCTC
Found at i:70658553 original size:68 final size:69
Alignment explanation
Indices: 70658481--70658628 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
70658471 CATCATGTGT
* * * *
70658481 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70658543 ATGTAG
64 ATGTAG
* ** * *
70658549 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
70658612 GTAG
66 GTAG
70658616 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
70658629 GAGATAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
GTAG
Found at i:70663730 original size:28 final size:27
Alignment explanation
Indices: 70663687--70663791 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
70663677 CTGCCAGGAT
* * *
70663687 AGATAATATGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
70663714 AAATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
70663741 AGATATATGTGGTAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
70663768 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
70663792 GACGCTTCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 49 0.74
28 16 0.24
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:70665221 original size:25 final size:24
Alignment explanation
Indices: 70665186--70665244 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
70665176 CAACACTGCC
*
70665186 CTCCCTAATCAACTCCTAAAACTT
1 CTCCCTTATCAACTCCTAAAACTT
*
70665210 CTCCCCTTATCAACTCCTAAATCTT
1 CT-CCCTTATCAACTCCTAAAACTT
70665235 CTCCCTTATC
1 CTCCCTTATC
70665245 CCCTCATTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (24 bp):
CTCCCTTATCAACTCCTAAAACTT
Found at i:70667414 original size:43 final size:43
Alignment explanation
Indices: 70667361--70667464 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 43
70667351 GGTTTAATCT
*
70667361 ATTGGCACTAAGTGTGCGGTACAATTATAGCTTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
*
70667404 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
*
70667447 ATTAGCACACTAAGTGTG
1 ATT-G-GCACTAAGTGTG
70667465 TGAGTTTATT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 44 0.79
44 1 0.02
45 11 0.20
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
Found at i:70670111 original size:12 final size:13
Alignment explanation
Indices: 70670094--70670122 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70670084 TTTTTGGAAA
70670094 GTATGT-TTTATG
1 GTATGTATTTATG
70670106 GTATGTATTTATG
1 GTATGTATTTATG
70670119 GTAT
1 GTAT
70670123 AATCTTGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (13 bp):
GTATGTATTTATG
Found at i:70671745 original size:12 final size:11
Alignment explanation
Indices: 70671723--70671752 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
70671713 GCAATGAAAC
70671723 TTTTCTTTTCA
1 TTTTCTTTTCA
70671734 TTTTCATTTTCA
1 TTTTC-TTTTCA
70671746 TTTTCTT
1 TTTTCTT
70671753 GTTTTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:70671772 original size:44 final size:44
Alignment explanation
Indices: 70671723--70671834 Score: 113
Period size: 45 Copynumber: 2.5 Consensus size: 44
70671713 GCAATGAAAC
*
70671723 TTTTCTTTTCATTTTCATTTTC-ATTTTCTTGTTTTC-TTCTCTCA
1 TTTTCTTTTCATTTTC-TTTTCTATTTT-TTGCTTTCTTTCTCTCA
* *
70671767 TTTTCTCTTTTA-TTTCTTTTGCTATTTTTTGCTTTCTTTTTCTCA
1 TTTTCT-TTTCATTTTCTTTT-CTATTTTTTGCTTTCTTTCTCTCA
* *
70671812 TTTCTTTTTTCTTTTTCTTTTCT
1 TTT-TCTTTTCATTTTCTTTTCT
70671835 TTCTTTTTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
43 4 0.07
44 18 0.32
45 24 0.43
46 10 0.18
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (44 bp):
TTTTCTTTTCATTTTCTTTTCTATTTTTTGCTTTCTTTCTCTCA
Found at i:70671815 original size:13 final size:11
Alignment explanation
Indices: 70671791--70671842 Score: 61
Period size: 11 Copynumber: 4.5 Consensus size: 11
70671781 TCTTTTGCTA
70671791 TTTTTTGCTTTC
1 TTTTTT-CTTTC
70671803 TTTTTCTCATTTC
1 TTTTT-TC-TTTC
70671816 TTTTTTCTTT-
1 TTTTTTCTTTC
70671826 TTCTTTTCTTTC
1 TT-TTTTCTTTC
70671838 TTTTT
1 TTTTT
70671843 CAACTTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.06
11 14 0.39
12 10 0.28
13 10 0.28
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTTTCTTTC
Found at i:70677350 original size:12 final size:12
Alignment explanation
Indices: 70677333--70677359 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70677323 ATTCCGAAGT
70677333 ATATATATATAC
1 ATATATATATAC
70677345 ATATATATATAC
1 ATATATATATAC
70677357 ATA
1 ATA
70677360 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:70689671 original size:75 final size:78
Alignment explanation
Indices: 70689465--70689673 Score: 293
Period size: 75 Copynumber: 2.7 Consensus size: 78
70689455 ATATCCGGAC
* *
70689465 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TAAG-TCCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
70689530 TTGTTAAATCCGGGT
64 TTGTTAAATCCGGGT
**
70689545 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGT-CCG-AGGCATTCGTGCGAG-
1 TAAGTCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT
70689607 T-TTAAATCCGGGT
65 TGTTAAATCCGGGT
* * *
70689620 TAAGTCCGAAGGCATTGTGTGAGTTACTAAA-CCGGGCTATGTCCCGAAGGCATT
1 TAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
70689674 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
73 9 0.08
74 15 0.13
75 35 0.30
76 1 0.01
77 15 0.13
78 6 0.05
79 32 0.27
80 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT
GTTAAATCCGGGT
Found at i:70689672 original size:38 final size:39
Alignment explanation
Indices: 70689465--70689673 Score: 266
Period size: 39 Copynumber: 5.4 Consensus size: 39
70689455 ATATCCGGAC
* * *
70689465 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
**
70689505 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
**
70689545 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
70689584 TAAGTCCG-AGGCATTCGTGCGAGTT--TAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
* *
70689620 TAAGTCCGAAGGCATT-GTGTGAGTTACTAAA-CCGGGC
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
*
70689657 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
70689674 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 8, Indels: 12
0.89 0.05 0.07
Matches are distributed among these distances:
36 27 0.17
37 16 0.10
38 32 0.21
39 43 0.28
40 38 0.24
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
Found at i:70697415 original size:40 final size:40
Alignment explanation
Indices: 70697319--70697579 Score: 275
Period size: 40 Copynumber: 6.7 Consensus size: 40
70697309 TTGAATGCTG
* * * * *
70697319 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70697359 TCC-GGATAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70697398 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-T--TAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
70697435 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
70697475 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70697515 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70697554 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
70697580 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
37 36 0.18
38 1 0.01
39 58 0.29
40 102 0.52
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70697475 original size:77 final size:77
Alignment explanation
Indices: 70697371--70697577 Score: 290
Period size: 77 Copynumber: 2.6 Consensus size: 77
70697361 CGGATAAGAT
* *
70697371 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-GTTAAA
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGATGTTAAA
70697435 TCCGGGTTAAGTC
65 TCCGGGTTAAGTC
**
70697448 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGA--TGTTA
*
70697513 AATCCGGGTTATGTC
63 AATCCGGGTTAAGTC
* * * *
70697528 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
70697578 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
76 3 0.03
77 50 0.43
79 33 0.29
80 29 0.25
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGATGTTAAAT
CCGGGTTAAGTC
Found at i:70697597 original size:79 final size:80
Alignment explanation
Indices: 70697371--70697612 Score: 242
Period size: 77 Copynumber: 3.1 Consensus size: 80
70697361 CGGATAAGAT
* * * * * * * *
70697371 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCG--TG-CGAGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
70697433 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
** * * ** ** *
70697448 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
70697513 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
70697528 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
70697592 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
70697606 CCGAAGG
1 CCGAAGG
70697613 TACGTGATTT
Statistics
Matches: 137, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
77 48 0.35
78 14 0.10
79 46 0.34
80 29 0.21
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:70705303 original size:40 final size:40
Alignment explanation
Indices: 70705220--70705482 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
70705210 GTGAATGCTG
* * * * * *
70705220 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
70705260 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
70705300 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
70705340 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
70705380 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70705420 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70705459 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70705483 GAACGAGGAG
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:70711894 original size:90 final size:90
Alignment explanation
Indices: 70711743--70711924 Score: 339
Period size: 90 Copynumber: 2.0 Consensus size: 90
70711733 TAGGCACTTC
70711743 CACACGGGTAATCCACACGCCCGTGTGTCATGTCCATGTCGACTAAGAACCAACTCAGTATTGTA
1 CACACGGGTAATCCACACGCCCGTGTGTCATGTCCATGTCGACTAAGAACCAACTCAGTATTGTA
70711808 CACGGCCTAGGCACCTTCACACGGG
66 CACGGCCTAGGCACCTTCACACGGG
*
70711833 CACACGGGTAGA-CTACACGCCCGTGTGTCATGTCCATGTCGACTAAGAACCAACTCAGTATTGT
1 CACACGGGTA-ATCCACACGCCCGTGTGTCATGTCCATGTCGACTAAGAACCAACTCAGTATTGT
70711897 ACACGGCCTAGGCACCTTCACACGGG
65 ACACGGCCTAGGCACCTTCACACGGG
70711923 CA
1 CA
70711925 TGGCACACGG
Statistics
Matches: 90, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
90 89 0.99
91 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.20
Consensus pattern (90 bp):
CACACGGGTAATCCACACGCCCGTGTGTCATGTCCATGTCGACTAAGAACCAACTCAGTATTGTA
CACGGCCTAGGCACCTTCACACGGG
Found at i:70713044 original size:13 final size:13
Alignment explanation
Indices: 70713026--70713050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70713016 TTAAAACTAA
70713026 AATTAACTAAATT
1 AATTAACTAAATT
70713039 AATTAACTAAAT
1 AATTAACTAAAT
70713051 AACACTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
AATTAACTAAATT
Found at i:70724951 original size:20 final size:20
Alignment explanation
Indices: 70724926--70724972 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
70724916 ATAATGATAA
70724926 ATTTATTTT-TTAATATTTAT
1 ATTTATTTTGTTAAT-TTTAT
70724946 ATTTATTTTGTTAATTTTAT
1 ATTTATTTTGTTAATTTTAT
70724966 ATTTATT
1 ATTTATT
70724973 CTACTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTATTTTGTTAATTTTAT
Found at i:70725179 original size:19 final size:19
Alignment explanation
Indices: 70725147--70725195 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 19
70725137 GTATATTATA
70725147 TCAAAAAATAATTTAAAAAT
1 TCAAAAAAT-ATTTAAAAAT
70725167 T-ATAAAAATATTTAAAAAT
1 TCA-AAAAATATTTAAAAAT
70725186 TCAAAAAATA
1 TCAAAAAATA
70725196 AAAATTTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (19 bp):
TCAAAAAATATTTAAAAAT
Found at i:70725199 original size:15 final size:16
Alignment explanation
Indices: 70725179--70725213 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
70725169 TAAAAATATT
70725179 TAAAAA-TTCAAAAAA
1 TAAAAATTTCAAAAAA
70725194 TAAAAATTTCAAAAAA
1 TAAAAATTTCAAAAAA
70725210 -AAAA
1 TAAAA
70725214 CATAAAGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAAATTTCAAAAAA
Found at i:70725351 original size:19 final size:19
Alignment explanation
Indices: 70725320--70725361 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
70725310 GCTGGTAATC
*
70725320 AAAT-TTAACTTAA-AAAA
1 AAATATTAAATTAACAAAA
70725337 TAAATATTAAATTAACAAAA
1 -AAATATTAAATTAACAAAA
70725357 AAATA
1 AAATA
70725362 AATATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 13 0.62
20 4 0.19
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATATTAAATTAACAAAA
Found at i:70728517 original size:48 final size:48
Alignment explanation
Indices: 70728411--70728633 Score: 240
Period size: 48 Copynumber: 4.7 Consensus size: 48
70728401 GTGATTGTGT
* * * * * *
70728411 GCCAGTGTAAAACATGTCTGGGACAT-GCATCGGAC-ACATTATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTAGATGATGATA
* * *
70728457 GCCAGTATAAGACGATGTCTAGGACATGGCATCGGCGTAGA-GACGAGT-
1 GCCAGTGTAAGAC-ATGTCTAGGACATGGCATCGGCCTAGATGATGA-TA
* * *
70728505 GCCAATGTAAGACATGTCTGGGACAT-GCATCGGCCTCGATGATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTAGATGATGATA
* * *
70728552 GCCAGTGTAAGACATGTCTGGGGCATGGCATCGGCCTTGATGATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTAGATGATGATA
*
70728600 GCCAGTGTAAGACCATGTCTAAGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTAGGACATGGCATCG
70728634 ACAACTTATC
Statistics
Matches: 148, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
46 23 0.16
47 52 0.35
48 53 0.36
49 20 0.14
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTAGATGATGATA
Found at i:70728570 original size:94 final size:94
Alignment explanation
Indices: 70728409--70728586 Score: 259
Period size: 94 Copynumber: 1.9 Consensus size: 94
70728399 GGGTGATTGT
* *
70728409 GTGCCAGTGTAAAACATGTCTGGGACATGCATCGGACACATTATGAGAGCCAGTATAAGACGATG
1 GTGCCAATGTAAAACATGTCTGGGACATGCATCGGACACATGATGAGAGCCAGTATAAGACGATG
70728474 TCTAGGACATGGCATCGGCGTAGAGACGA
66 TCTAGGACATGGCATCGGCGTAGAGACGA
* * * * *
70728503 GTGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGAC-AT
1 GTGCCAATGTAAAACATGTCTGGGACATGCATCGGACAC-ATGATGAGAGCCAGTATAAGACGAT
* *
70728567 GTCTGGGGCATGGCATCGGC
65 GTCTAGGACATGGCATCGGC
70728587 CTTGATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 55 0.74
95 19 0.26
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (94 bp):
GTGCCAATGTAAAACATGTCTGGGACATGCATCGGACACATGATGAGAGCCAGTATAAGACGATG
TCTAGGACATGGCATCGGCGTAGAGACGA
Found at i:70735329 original size:23 final size:22
Alignment explanation
Indices: 70735291--70735392 Score: 116
Period size: 24 Copynumber: 4.4 Consensus size: 22
70735281 AAACTCCTCC
70735291 TGAGCTGATAGACAGTAAGCTCTA
1 TGAGCTGA-A-ACAGTAAGCTCTA
*
70735315 CTGAGTTGAAACAGTAAGCTCTGA
1 -TGAGCTGAAACAGTAAGCTCT-A
70735339 TGAGCTG-AACAGTAAGCTCATA
1 TGAGCTGAAACAGTAAGCTC-TA
70735361 TGAGCTGAGAACAGTAAGCTCTTA
1 TGAGCTGA-AACAGTAAGCTC-TA
*
70735385 CGAGCTGA
1 TGAGCTGA
70735393 TATATAGATA
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
22 20 0.29
23 19 0.28
24 23 0.33
25 7 0.10
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (22 bp):
TGAGCTGAAACAGTAAGCTCTA
Found at i:70735352 original size:22 final size:21
Alignment explanation
Indices: 70735302--70735392 Score: 101
Period size: 22 Copynumber: 4.0 Consensus size: 21
70735292 GAGCTGATAG
*
70735302 ACAGTAAGCTCTACTGAGTTGAA
1 ACAGTAAGCTCTA-TGAGCTG-A
70735325 ACAGTAAGCTCTGATGAGCTGA
1 ACAGTAAGCTCT-ATGAGCTGA
70735347 ACAGTAAGCTCATATGAGCTGAGA
1 ACAGTAAGCTC-TATGAGCT--GA
*
70735371 ACAGTAAGCTCTTACGAGCTGA
1 ACAGTAAGCTC-TATGAGCTGA
70735393 TATATAGATA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
22 21 0.34
23 19 0.31
24 21 0.34
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (21 bp):
ACAGTAAGCTCTATGAGCTGA
Found at i:70735410 original size:50 final size:47
Alignment explanation
Indices: 70735292--70735417 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 47
70735282 AACTCCTCCT
* *
70735292 GAGCTGATAGACAGTAAGCTC-TACTGAGTTGAAACAGTAAGCTCTGAT
1 GAGCTGATA-ACAGTAAGCTCATA-TGAGCTGAAACAGTAAGCTCTGAC
*
70735340 GAGCTG--AACAGTAAGCTCATATGAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTGATAACAGTAAGCTCATATGAGCTGA-AACAGTAAGCTCTGAC
* *
70735386 GAGCTGATATATAGATAAGCTCATACGAGCTG
1 GAGCTGATA-ACAG-TAAGCTCATATGAGCTG
70735418 CGGTGAGTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 18 0.27
46 23 0.34
48 7 0.10
49 3 0.04
50 16 0.24
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (47 bp):
GAGCTGATAACAGTAAGCTCATATGAGCTGAAACAGTAAGCTCTGAC
Found at i:70737021 original size:13 final size:13
Alignment explanation
Indices: 70737003--70737035 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
70736993 CAACATTTGA
70737003 AAGACTACGAAAT
1 AAGACTACGAAAT
70737016 AAGACTACGAAAT
1 AAGACTACGAAAT
70737029 AAGACTA
1 AAGACTA
70737036 GAATGCATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.55, C:0.15, G:0.15, T:0.15
Consensus pattern (13 bp):
AAGACTACGAAAT
Found at i:70741970 original size:18 final size:17
Alignment explanation
Indices: 70741923--70741980 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
70741913 CTAAAGGTAT
70741923 TGAATAATTGACTGTTAC
1 TGAA-AATTGACTGTTAC
* *
70741941 TGCAAGACTGACTGTTAC
1 TG-AAAATTGACTGTTAC
* *
70741959 TGAACAATTGACCGTTAT
1 TGAA-AATTGACTGTTAC
70741977 TGAA
1 TGAA
70741981 GAATCGATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (17 bp):
TGAAAATTGACTGTTAC
Found at i:70744152 original size:49 final size:49
Alignment explanation
Indices: 70744076--70744199 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
70744066 GATGCCAACA
** * *
70744076 CCATGTCCCCGACATGGTCGTACACTGGCTTTCATATAGCGAG-GTCGATG
1 CCATGTCCAAGACA-GGTCTTACACTGGCTCTCATATAGCG-GTGTCGATG
* * *
70744126 CCATGTCCAAGATAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATG
1 CCATGTCCAAGACAGGTCTTACACTGGCTCTCATATAGCGGTGTCGATG
*
70744175 CCATGTCCTAGACAGGTCTTACACT
1 CCATGTCCAAGACAGGTCTTACACT
70744200 AACACACAAC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 52 0.81
50 11 0.17
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (49 bp):
CCATGTCCAAGACAGGTCTTACACTGGCTCTCATATAGCGGTGTCGATG
Found at i:70744343 original size:46 final size:45
Alignment explanation
Indices: 70744264--70744384 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 45
70744254 TCGCGAGGTT
* * ** *
70744264 GATGCATGTCCCAGACGTGTCTTACATTAGCTCTTGTCTCAAT-GCC
1 GATGCATGT-CCAGACATGTCTTACACTAGCTCTCATAT-AATGGCC
* * *
70744310 GATGCATGTCTCAGACATGTCTTACACTGGCTCTCATATTATGGCG
1 GATGCATGTC-CAGACATGTCTTACACTAGCTCTCATATAATGGCC
70744356 GATGCATGTCCTAGACATGTCTTACACTA
1 GATGCATGTCC-AGACATGTCTTACACTA
70744385 TCACACAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
45 4 0.06
46 59 0.94
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (45 bp):
GATGCATGTCCAGACATGTCTTACACTAGCTCTCATATAATGGCC
Found at i:70749386 original size:27 final size:27
Alignment explanation
Indices: 70749356--70749407 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
70749346 AACCTCTAAT
**
70749356 TAATGTACTTCTTTTGAAACTCTTCAC
1 TAATGTACTTCTTTCAAAACTCTTCAC
70749383 TAATGTACTTCTTTCAAAACTCTTC
1 TAATGTACTTCTTTCAAAACTCTTC
70749408 CTAGAACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (27 bp):
TAATGTACTTCTTTCAAAACTCTTCAC
Found at i:70751773 original size:94 final size:94
Alignment explanation
Indices: 70751590--70751800 Score: 246
Period size: 94 Copynumber: 2.2 Consensus size: 94
70751580 TGACTCCATC
* ** *
70751590 TCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCTGATACATGTCCCAGACATGTCTTAC
1 TCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATACATGTCCCAGACATGTCTTAC
* * *
70751655 ACTAGCTCTCGTCTCAATGTCGATGCATG
66 ACTAGCTCTCATATCAATGCCGATGCATG
* * * * *
70751684 TCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGA-AGCATGTCTCATACATGTCTTA
1 TCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATA-CATGTCCCAGACATGTCTTA
* **
70751748 CACTGGCTCTCATAT-TTTGGCCGATGCATG
65 CACTAGCTCTCATATCAAT-GCCGATGCATG
*
70751778 TCCCAAACATGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
70751801 ACACAAATGA
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 2 0.02
94 95 0.98
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (94 bp):
TCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATACATGTCCCAGACATGTCTTAC
ACTAGCTCTCATATCAATGCCGATGCATG
Found at i:70751788 original size:46 final size:47
Alignment explanation
Indices: 70751634--70751797 Score: 165
Period size: 46 Copynumber: 3.5 Consensus size: 47
70751624 GAGGCTGATA
* * * * *
70751634 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT-GTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATCTATGGCCGATG
* * *
70751680 CATGTCCTAGACATGTCTTACACTGGCT-TAAATATCTCGA-GGCCGAAG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATATCT--ATGGCCGATG
* * *
70751728 CATGTCTCATACATGTCTTACACTGGCTCTCATAT-TTTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATCTATGGCCGATG
*
70751774 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
70751798 AGCACACAAA
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 58 0.60
47 1 0.01
48 35 0.36
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATATCTATGGCCGATG
Found at i:70753666 original size:19 final size:19
Alignment explanation
Indices: 70753644--70753683 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
70753634 AGTGAAATGG
*
70753644 TAAC-AAAATAGTGAAAAAA
1 TAACAAAAAAAGT-AAAAAA
70753663 TAACAAAAAAAGTAAAAAA
1 TAACAAAAAAAGTAAAAAA
70753682 TA
1 TA
70753684 GCAAGGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.15
Consensus pattern (19 bp):
TAACAAAAAAAGTAAAAAA
Found at i:70755333 original size:16 final size:16
Alignment explanation
Indices: 70755299--70755334 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
70755289 ATCTAGGGGA
*
70755299 TTTTCATTTTTTTTAT
1 TTTTCATTTTATTTAT
70755315 TTTTC-TTTTATTTAT
1 TTTTCATTTTATTTAT
70755330 TTTTC
1 TTTTC
70755335 CTGATTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTCATTTTATTTAT
Found at i:70759239 original size:66 final size:67
Alignment explanation
Indices: 70759110--70759239 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
70759100 GGGATGTATC
*
70759110 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
70759175 AGGACA
62 AGGACA
* *
70759181 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
70759240 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:70762029 original size:14 final size:16
Alignment explanation
Indices: 70762000--70762031 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
70761990 CTTTAAATTG
70762000 TTCTATTATGTAAAAT
1 TTCTATTATGTAAAAT
70762016 TTCTATT-T-TAAAAT
1 TTCTATTATGTAAAAT
70762030 TT
1 TT
70762032 TCTTTATACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (16 bp):
TTCTATTATGTAAAAT
Found at i:70762099 original size:31 final size:33
Alignment explanation
Indices: 70762043--70762104 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
70762033 CTTTATACTT
*
70762043 TTGTTTTCAAAATTTATACATTATACATTATATA
1 TTGTTTTCAAAATCTATA-ATTATACATTATATA
70762077 TTGTTTT-AAAATCTAT-ATTATACATTAT
1 TTGTTTTCAAAATCTATAATTATACATTAT
70762105 TTTTTATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 12 0.44
33 8 0.30
34 7 0.26
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (33 bp):
TTGTTTTCAAAATCTATAATTATACATTATATA
Found at i:70770412 original size:18 final size:20
Alignment explanation
Indices: 70770389--70770427 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70770379 ATCAGTGGAC
70770389 TTTTAC-TGT-TTTTGGTTT
1 TTTTACTTGTATTTTGGTTT
*
70770407 TTTTACTTTTATTTTGGTTT
1 TTTTACTTGTATTTTGGTTT
70770427 T
1 T
70770428 GGTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 2 0.11
20 10 0.56
ACGTcount: A:0.08, C:0.05, G:0.13, T:0.74
Consensus pattern (20 bp):
TTTTACTTGTATTTTGGTTT
Found at i:70771146 original size:176 final size:174
Alignment explanation
Indices: 70770740--70771360 Score: 752
Period size: 176 Copynumber: 3.6 Consensus size: 174
70770730 CTTCATCCTG
* * *
70770740 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCTATACATGGTG
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
* * * * * *
70770805 ATAAGATTCGCCATCTTTGATCCGCTGCGCTACAACTTCAGGGAAATAAGA--T---CTTCAGTC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACAACTTCAGGGGAATAAGACTTCAACTTCAGTC
* * *
70770865 TGCTTCCTTTCTACCTTAGGAAGATAAGACTCA-TCTT---C-A
131 TGCTTCCTTACTACCTCAGGAAGATAAGACTCATTTTTAACCTA
* * * *
70770904 -ACT-TT-CTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCTATTGCCGATATATGAAG
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
* * * **
70770966 ATAAGATTCACCATCTTTGGTCTGTTCCACTACTGCTT-AGGGGAATAAGACCTTCAAACTTCAG
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACAACTTCAGGGGAATAAGA-CTTC-AACTTCAG
*
70771030 TCTGCTTCCTTACTACCTCAAGAAGATAAGACTCATTATTTAACCTA
129 TCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATT-TTTAACCTA
* * *
70771077 CTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTTCCGATACATGGAG
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
* ** *
70771142 ATAAGATTCTCCATCTTCGATCTGCTCCGGTGCAACTTCA-GGGAGATAAGATCTTCAATCTTCA
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACAACTTCAGGGGA-ATAAGA-CTTCAA-CTTCA
* *
70771206 GTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTA
128 GTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATT-TTTAACCTA
** *
70771254 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGCAG-TAAAATCTGTTCCATTGCCGATACATGGAG
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
*
70771318 ATAAGATTCACCATCTTCGATCTGCTCCACTACAACTTTAGGG
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACAACTTCAGGG
70771361 AGATAAAATT
Statistics
Matches: 385, Mismatches: 52, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
160 11 0.03
161 81 0.21
162 2 0.01
163 3 0.01
167 38 0.10
168 1 0.00
169 2 0.01
172 1 0.00
173 1 0.00
174 2 0.01
175 2 0.01
176 148 0.38
177 93 0.24
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (174 bp):
CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAG
ATAAGATTCACCATCTTCGATCTGCTCCACTACAACTTCAGGGGAATAAGACTTCAACTTCAGTC
TGCTTCCTTACTACCTCAGGAAGATAAGACTCATTTTTAACCTA
Found at i:70771228 original size:45 final size:43
Alignment explanation
Indices: 70771179--70771279 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
70771169 CGGTGCAACT
** *
70771179 TCAGGGAGATAAGATCTTCAATCTTCAGTCTGCT-TCCTTGCTACC
1 TCAGGGAGATAAGA-C-TCAATCTTCAACCTACTCT-CTTGCTACC
* *
70771224 TCAGGAAGATAAGACTCATTCTTCAACCTACTCTCTTGCTACC
1 TCAGGGAGATAAGACTCAATCTTCAACCTACTCTCTTGCTACC
*
70771267 TCAGAGAGATAAG
1 TCAGGGAGATAAG
70771280 GCTGGCAGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
43 33 0.69
44 2 0.04
45 13 0.27
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
TCAGGGAGATAAGACTCAATCTTCAACCTACTCTCTTGCTACC
Found at i:70773802 original size:45 final size:45
Alignment explanation
Indices: 70773751--70773844 Score: 179
Period size: 45 Copynumber: 2.1 Consensus size: 45
70773741 AAGATCTCAC
70773751 CATTTAAGACATAATCATAGACTAGCCTTCTCAACGTCCTTTTGT
1 CATTTAAGACATAATCATAGACTAGCCTTCTCAACGTCCTTTTGT
*
70773796 CATTTAAGACATAATCATAGGCTAGCCTTCTCAACGTCCTTTTGT
1 CATTTAAGACATAATCATAGACTAGCCTTCTCAACGTCCTTTTGT
70773841 CATT
1 CATT
70773845 CTCTGTTGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (45 bp):
CATTTAAGACATAATCATAGACTAGCCTTCTCAACGTCCTTTTGT
Found at i:70785567 original size:18 final size:20
Alignment explanation
Indices: 70785544--70785582 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70785534 ATCAGTGGAC
70785544 TTTTAC-TGT-TTTTGGTTT
1 TTTTACTTGTATTTTGGTTT
*
70785562 TTTTACTTTTATTTTGGTTT
1 TTTTACTTGTATTTTGGTTT
70785582 T
1 T
70785583 GGTTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 2 0.11
20 10 0.56
ACGTcount: A:0.08, C:0.05, G:0.13, T:0.74
Consensus pattern (20 bp):
TTTTACTTGTATTTTGGTTT
Found at i:70787919 original size:15 final size:14
Alignment explanation
Indices: 70787884--70787918 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
70787874 AAAGGCAGCC
70787884 AAAAAAATAAAACA
1 AAAAAAATAAAACA
70787898 AAAAAAATAAAACA
1 AAAAAAATAAAACA
70787912 AAAAAAA
1 AAAAAAA
70787919 AGATCGTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.89, C:0.06, G:0.00, T:0.06
Consensus pattern (14 bp):
AAAAAAATAAAACA
Found at i:70789532 original size:46 final size:46
Alignment explanation
Indices: 70789465--70789729 Score: 238
Period size: 46 Copynumber: 5.7 Consensus size: 46
70789455 TGTAACCTGC
* * ** *
70789465 CCATAAGCGAACTCGGGCTCAACTCAATGAGCTCGGGGGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * * *
70789511 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGC-CTAG-AT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GCATTCGCAT
* * * *
70789557 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
70789604 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* *
70789654 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
70789697 CCATAAGTGAACTCGGACTCAACTCAACGAGCT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCT
70789730 TGGATGCCCA
Statistics
Matches: 175, Mismatches: 28, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 2 0.01
45 6 0.03
46 89 0.51
47 59 0.34
48 5 0.03
49 2 0.01
50 4 0.02
51 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:70789579 original size:93 final size:93
Alignment explanation
Indices: 70789472--70789737 Score: 442
Period size: 93 Copynumber: 2.9 Consensus size: 93
70789462 TGCCCATAAG
* * * ** * *
70789472 CGAACTCGGGCTCAACTCAATGAGCTCGGGGGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70789537 ACGAGCTCGGATGCCTAGATACATCTCA
66 ACGAGCTCGGATGCCTAGATACATCTCA
*
70789565 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70789630 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGATACATCTCA
70789658 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70789723 ACGAGCTTGGATGCC
66 ACGAGCTCGGATGCC
70789738 CAAATATCCT
Statistics
Matches: 162, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGATACATCTCA
Found at i:70789583 original size:47 final size:47
Alignment explanation
Indices: 70789519--70789686 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 47
70789509 ATCCATAAGT
*
70789519 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGATACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGATACATCTCAC
* * * * * *
70789566 GAACTCGGACTCAACTCAACGAGTTCGGA--CATTCGCATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-ATACATCTCA-C
*
70789612 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGATACATCTCAC
*
70789659 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
70789687 GCATTCGCAT
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.03
46 33 0.33
47 60 0.61
48 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGATACATCTCAC
Found at i:70791561 original size:30 final size:30
Alignment explanation
Indices: 70791526--70791587 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
70791516 TAAATTCAGT
70791526 AAAAACCATAATAAATTTACATATCACTTA
1 AAAAACCATAATAAATTTACATATCACTTA
70791556 AAAAACCATAATAAATTTACATATCACTTA
1 AAAAACCATAATAAATTTACATATCACTTA
70791586 AA
1 AA
70791588 TGCTTAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (30 bp):
AAAAACCATAATAAATTTACATATCACTTA
Found at i:70791610 original size:51 final size:51
Alignment explanation
Indices: 70791555--70791657 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
70791545 CATATCACTT
70791555 AAAAAACCATAATAAATTTACATATCACTTAAATGCTTAAGATAATCTAAA
1 AAAAAACCATAATAAATTTACATATCACTTAAATGCTTAAGATAATCTAAA
70791606 AAAAAACCATAATAAATTTACATATCACTTAAATGCTTAAGATAATCTAAA
1 AAAAAACCATAATAAATTTACATATCACTTAAATGCTTAAGATAATCTAAA
70791657 A
1 A
70791658 CAATCTATCA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.53, C:0.14, G:0.04, T:0.29
Consensus pattern (51 bp):
AAAAAACCATAATAAATTTACATATCACTTAAATGCTTAAGATAATCTAAA
Found at i:70795618 original size:47 final size:47
Alignment explanation
Indices: 70795509--70795619 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
70795499 CCGGGATAAG
* * *
70795509 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
70795556 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
70795603 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
70795620 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:70798761 original size:23 final size:25
Alignment explanation
Indices: 70798725--70798778 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
70798715 GAAATCCTCA
70798725 CATATATATATACCAA-AGAT-TTT
1 CATATATATATACCAATAGATGTTT
*
70798748 CATATAT-TAGTACCAATTGATGTTT
1 CATATATATA-TACCAATAGATGTTT
70798773 CATATA
1 CATATA
70798779 AAAGAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 2 0.07
23 13 0.48
24 3 0.11
25 9 0.33
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (25 bp):
CATATATATATACCAATAGATGTTT
Found at i:70799685 original size:31 final size:32
Alignment explanation
Indices: 70799642--70799710 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 32
70799632 CAACCCAAAC
* *
70799642 TCAAT-AACTTAAATAAAAACTTTTGAATAGT
1 TCAATGAACTTAAATAAAAACTTTCGAATAAT
*
70799673 TCAATGAA-TTAAATGAAAACTTTCGAATAAT
1 TCAATGAACTTAAATAAAAACTTTCGAATAAT
*
70799704 TTAATGA
1 TCAATGA
70799711 TCAAATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 31 0.94
32 2 0.06
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (32 bp):
TCAATGAACTTAAATAAAAACTTTCGAATAAT
Found at i:70807456 original size:5 final size:5
Alignment explanation
Indices: 70807446--70807499 Score: 99
Period size: 5 Copynumber: 10.8 Consensus size: 5
70807436 AAAAAATGTA
*
70807446 AATAT AATAT AATAT AATAT AATAT AATAT AATAT GATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
70807496 AATA
1 AATA
70807500 ATAGAAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:70813650 original size:24 final size:24
Alignment explanation
Indices: 70813595--70813643 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
70813585 CTAGACTAAT
70813595 CAGAGTTTGATTGAAACAAATAAA
1 CAGAGTTTGATTGAAACAAATAAA
*
70813619 CAGAGTTTGGTTGAAACAAATAAA
1 CAGAGTTTGATTGAAACAAATAAA
70813643 C
1 C
70813644 GAAGTTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.10, G:0.18, T:0.24
Consensus pattern (24 bp):
CAGAGTTTGATTGAAACAAATAAA
Found at i:70813657 original size:24 final size:24
Alignment explanation
Indices: 70813595--70813658 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
70813585 CTAGACTAAT
* *
70813595 CAGAGTTTGATTGAAACAAATAAA
1 CAGAGTTTAACTGAAACAAATAAA
***
70813619 CAGAGTTTGGTTGAAACAAATAAA
1 CAGAGTTTAACTGAAACAAATAAA
70813643 C-GAAGTTTAACTGAAA
1 CAG-AGTTTAACTGAAA
70813659 GATTATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 1 0.03
24 34 0.97
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (24 bp):
CAGAGTTTAACTGAAACAAATAAA
Found at i:70816996 original size:49 final size:46
Alignment explanation
Indices: 70816887--70816999 Score: 120
Period size: 46 Copynumber: 2.4 Consensus size: 46
70816877 CGGCCACATT
* * * * *
70816887 ATGAGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAG
1 ATGAGAGCCAATGTAAGACATGTTAGAGACATGCATCGACACTGAG
* *
70816933 ACGAGAGCTAATGTAAGACATGTCTAGAG-CATGGCATCGACACTGATAG
1 ATGAGAGCCAATGTAAGACATGT-TAGAGACAT-GCATCGACACTG--AG
70816982 ATGAGAGCCAATGTAAGA
1 ATGAGAGCCAATGTAAGA
70817000 ATTGTCTGGG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
46 23 0.43
47 13 0.24
49 18 0.33
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (46 bp):
ATGAGAGCCAATGTAAGACATGTTAGAGACATGCATCGACACTGAG
Found at i:70817016 original size:49 final size:47
Alignment explanation
Indices: 70816887--70817019 Score: 137
Period size: 49 Copynumber: 2.8 Consensus size: 47
70816877 CGGCCACATT
* * * *
70816887 ATGAGAGCCAGTGTAAGACATGTTTGGGACAT-GCATCGGCATTGAG
1 ATGAGAGCCAATGTAAGACATGTCTGGGACATGGCATCGACACTGAG
* * *
70816933 ACGAGAGCTAATGTAAGACATGTCT-AGAGCATGGCATCGACACTGATAG
1 ATGAGAGCCAATGTAAGACATGTCTGGGA-CATGGCATCGACACTG--AG
*
70816982 ATGAGAGCCAATGTAAGA-ATTGTCTGGGATATGGCATC
1 ATGAGAGCCAATGTAAGACA-TGTCTGGGACATGGCATC
70817020 AGCCTCTATA
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.03
46 24 0.34
47 10 0.14
48 1 0.01
49 31 0.44
50 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (47 bp):
ATGAGAGCCAATGTAAGACATGTCTGGGACATGGCATCGACACTGAG
Found at i:70819272 original size:125 final size:126
Alignment explanation
Indices: 70819134--70819434 Score: 311
Period size: 126 Copynumber: 2.4 Consensus size: 126
70819124 TCCAAACAGT
* ** * * *** *
70819134 AAATTGAAACCCAGCACGATTGGGCACGATTTGTCGAA-TTTCCAAATACGAA-ACATTGCCTAA
1 AAATTGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCCCCAAACAC-AAGACATTGCCTAA
* * * * * *
70819197 TTTTAATTTGAGAACACATGGATGAAATTTCAAAAGGATATTCTGGATTTTAGTCGAATAGA-
65 TTTTAAATTAAGAAAACATAGACGAAATTTCAAAAGGATATTCTGGATTCTAGTCG-ATAGAG
* * **
70819259 AAATTGAAGCCCAGCACGATTGGGCACAACCTCTCAAACCCCCCAAACACAAGATATTGCCTCGT
1 AAATTGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCCCCAAACACAAGACATTGCCTAAT
* * *
70819324 TTTAAATTAAGAAAACATAGACGAAATTTCACAAGGATATTCTGTATTCTAGTCGATTGAG
66 TTTAAATTAAGAAAACATAGACGAAATTTCAAAAGGATATTCTGGATTCTAGTCGATAGAG
* **** *
70819385 AAATCGAAACCCAGCACGATTGGGCATGGTCTCTCAAACTCCCCAAACAC
1 AAATTGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCCCCAAACAC
70819435 GAAATATTGC
Statistics
Matches: 144, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
125 38 0.26
126 106 0.74
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (126 bp):
AAATTGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCCCCAAACACAAGACATTGCCTAAT
TTTAAATTAAGAAAACATAGACGAAATTTCAAAAGGATATTCTGGATTCTAGTCGATAGAG
Found at i:70819327 original size:126 final size:126
Alignment explanation
Indices: 70819175--70819453 Score: 346
Period size: 126 Copynumber: 2.2 Consensus size: 126
70819165 TGTCGAATTT
* * ** * * * * *
70819175 CCAAATACGAAACATTGCCTAATTTTAATTTGAGAACACATGGATGAAATTTCAAAAGGATATTC
1 CCAAACACGAAATATTGCCTCGTTTTAAATTAAGAAAACATAGACGAAATTTCAAAAGGATATTC
* * *
70819240 TGGATTTTAGTCGAATAGA-AAATTGAAGCCCAGCACGATTGGGCACAACCTCTCAAACCCC
66 TGGATTCTAGTCG-ATAGAGAAATCGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCC
*
70819301 CCAAACAC-AAGATATTGCCTCGTTTTAAATTAAGAAAACATAGACGAAATTTCACAAGGATATT
1 CCAAACACGAA-ATATTGCCTCGTTTTAAATTAAGAAAACATAGACGAAATTTCAAAAGGATATT
* * **** *
70819365 CTGTATTCTAGTCGATTGAGAAATCGAAACCCAGCACGATTGGGCATGGTCTCTCAAACTCC
65 CTGGATTCTAGTCGATAGAGAAATCGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCC
70819427 CCAAACACGAAATATTGCCTCGTTTTA
1 CCAAACACGAAATATTGCCTCGTTTTA
70819454 GCTTTTTTTA
Statistics
Matches: 130, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
125 6 0.05
126 122 0.94
127 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (126 bp):
CCAAACACGAAATATTGCCTCGTTTTAAATTAAGAAAACATAGACGAAATTTCAAAAGGATATTC
TGGATTCTAGTCGATAGAGAAATCGAAACCCAGCACGATTGGGCACAACCTCTCAAACCCC
Found at i:70819875 original size:3 final size:3
Alignment explanation
Indices: 70819828--70819858 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
70819818 TGAAAATAGA
70819828 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
70819859 GAGGTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:70821786 original size:178 final size:178
Alignment explanation
Indices: 70821537--70822756 Score: 1893
Period size: 178 Copynumber: 6.9 Consensus size: 178
70821527 CTTAGGGAGT
* * * * * * *
70821537 TAAGACTTGTATCTTCAACTTTCTCTCCTACTATCTGAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * *
70821602 GCTCCATAGCCGATACGTAGAGATAAGACTCGCCATTTCTGATCTACTCCATAGCTGATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
*
70821667 AGATAAGATCTATAATTTGCAGTCTGCTTCCTTGCTACCTCAGGAAGA
131 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
70821715 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * * *
70821780 GCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTTTTATCTGCTCTATAGCCAATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
* * *
70821845 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTTAGGGAGT
131 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
* * * * * * *
70821893 TAAGGCTTGTATCTTCAACTTGCTCTCCTACTATCTGAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * *
70821958 GCTCCATAGCCGATACGTAGAGATAAGACTCGCCATTTCTGATCTACTCCATAGCTGATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
*
70822023 AGATAAGATCTATAATTTGCAGTCTGCTTCCTTGCTACCTCAGGAAGA
131 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
70822071 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * *
70822136 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTTATCTGCTCCATAGCCAATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
*
70822201 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTTAGGAAGA
131 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
70822249 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * * *
70822314 ACTTCATAGCCGATACATGGAGATAAGACTCGCCATTTTTTATCTGCTCCATAGCCAATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
70822379 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
131 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
* *
70822427 TAAGACTCGTATCTTCAACCTACTCTCTTGCTACCTTAGAGAGATAAGGCTGGTAGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * *
70822492 GCTCCATAGTCGATACATAGAGATAAGACTAGCCATTTCTGATATGCTCCATAGCCGATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
* * * *
70822557 AGATAAAATCTATAATTTGCAGTCTGTTTCCTTGCTACCTCAAGAAGA
131 AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
*
70822605 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
1 TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
* * * * * * *
70822670 GCTTCATACCCGATACACGGAGATAAGACTCACTATTTCTGATCTACTCCATAGCTGATACATGG
66 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
70822735 AGATAAGAGTC-ATAATTTGCAG
131 AGATAAGA-TCTATAATTTGCAG
70822757 CTTGTTACCC
Statistics
Matches: 952, Mismatches: 89, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
178 950 1.00
179 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (178 bp):
TAAGACTCGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCT
GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGG
AGATAAGATCTATAATTTGCAGTATGCTTCCTTGCTACCTCAGGAAGA
Found at i:70822959 original size:64 final size:64
Alignment explanation
Indices: 70822857--70822983 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
70822847 TCATGTATCT
* * * *
70822857 ATGCTTATGCCAAATAGTTAGGATGCTATGATCGAAATGAGTTAAACT-CTCCTAGCTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAA-TGCTCCTAGCTAGATGTG
*
70822921 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAGCTAGATGT
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAGCTAGATGT
70822984 ACTACGAATG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 1 0.02
64 56 0.98
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAGCTAGATGTG
Found at i:70837434 original size:64 final size:64
Alignment explanation
Indices: 70837329--70837453 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
70837319 GAAAGTCGCA
* *
70837329 TTGACAAATTCTAATGACCGAAAGGAACACTCAATTGCTTCATCATCATTCTCGATGTACGACG
1 TTGACAAATTCCAATGACCGAAAGGAACACTCAATTACTTCATCATCATTCTCGATGTACGACG
70837393 TTGACAAATTCCAATGACCGAAAGGAACACTCAATTACTTCATCATCATTCTCGATGTACG
1 TTGACAAATTCCAATGACCGAAAGGAACACTCAATTACTTCATCATCATTCTCGATGTACG
70837454 GCTCGTCACT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (64 bp):
TTGACAAATTCCAATGACCGAAAGGAACACTCAATTACTTCATCATCATTCTCGATGTACGACG
Found at i:70844073 original size:126 final size:126
Alignment explanation
Indices: 70843860--70844137 Score: 312
Period size: 126 Copynumber: 2.2 Consensus size: 126
70843850 TATCGAATTT
* * * * * **
70843860 CCAAATACGAAACATTGCCTCA-TTTTAATTTGAGAAGACATGGA-TGAATTTCAAAAGGATATT
1 CCAAACACGAAATATTGCCT-AGTTTTAATTTAAGAAAACATAGACAAAATTTCAAAAGGATATT
* *
70843923 CTGTATTTTAGTCGAATGGAAAATCGAAGCCCAGCACGATTAGGCACGACCTCCCAAACCCC
65 CTGTATTCTAGTCGAATGGAAAATCGAAACCCAGCACGATTAGGCACGACCTCCCAAACCCC
* *
70843985 CCAAACAC-AAGATATTGTCTAGTTTTAATTTAAGAAAACATAGACAAAATTTCACAAGGATATT
1 CCAAACACGAA-ATATTGCCTAGTTTTAATTTAAGAAAACATAGACAAAATTTCAAAAGGATATT
* * * * ** * *
70844049 TTGTATTCTAGTTG-ATTGAGAAATCGAAACCCAGCACGATTGGGCACGGTCTCTCAAACTCC
65 CTGTATTCTAGTCGAATGGA-AAATCGAAACCCAGCACGATTAGGCACGACCTCCCAAACCCC
* *
70844111 CCAAATACGAAATATTGCCTCGTTTTA
1 CCAAACACGAAATATTGCCTAGTTTTA
70844138 GCTTTTTAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
124 3 0.02
125 37 0.29
126 84 0.67
127 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (126 bp):
CCAAACACGAAATATTGCCTAGTTTTAATTTAAGAAAACATAGACAAAATTTCAAAAGGATATTC
TGTATTCTAGTCGAATGGAAAATCGAAACCCAGCACGATTAGGCACGACCTCCCAAACCCC
Found at i:70844659 original size:3 final size:3
Alignment explanation
Indices: 70844545--70844641 Score: 63
Period size: 3 Copynumber: 32.3 Consensus size: 3
70844535 CTATAACAGA
* *
70844545 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AGGT AAA AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * ** * * * * *
70844590 TAT AGAA AAT AAT CGT AAT AGT AAA AAT AAT ACT GAT AGT AAT AA-
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70844635 AAT AAT A
1 AAT AAT A
70844642 GAGGTTGAGA
Statistics
Matches: 68, Mismatches: 22, Indels: 8
0.69 0.22 0.08
Matches are distributed among these distances:
2 3 0.04
3 62 0.91
4 3 0.04
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Done.