Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 212 of 320
Found at i:70847890 original size:25 final size:25
Alignment explanation
Indices: 70847862--70847915 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
70847852 TTAAAGTTAT
*
70847862 TTTAAGGTTAATA-TATTATTTAATA
1 TTTAAAGTTAATATTATTATTTAA-A
* *
70847887 TTTAAATTTAATATTTTTATTTAAA
1 TTTAAAGTTAATATTATTATTTAAA
70847912 TTTA
1 TTTA
70847916 GTTTTAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (25 bp):
TTTAAAGTTAATATTATTATTTAAA
Found at i:70847897 original size:13 final size:13
Alignment explanation
Indices: 70847879--70847930 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
70847869 TTAATATATT
70847879 ATTTAATATTTAA
1 ATTTAATATTTAA
**
70847892 ATTTAATATTTTT
1 ATTTAATATTTAA
*
70847905 ATTTAA-ATTTAG
1 ATTTAATATTTAA
*
70847917 TTTTAATATTTAA
1 ATTTAATATTTAA
70847930 A
1 A
70847931 ATAAGAATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
12 9 0.29
13 22 0.71
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
ATTTAATATTTAA
Found at i:70847930 original size:19 final size:20
Alignment explanation
Indices: 70847878--70847930 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
70847868 GTTAATATAT
70847878 TATTTAATATTTAAATTTAA
1 TATTTAATATTTAAATTTAA
* *
70847898 TATTT-TTATTTAAATTTAG
1 TATTTAATATTTAAATTTAA
70847917 T-TTTAATATTTAAA
1 TATTTAATATTTAAA
70847931 ATAAGAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 3 0.10
19 21 0.72
20 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TATTTAATATTTAAATTTAA
Found at i:70848719 original size:20 final size:21
Alignment explanation
Indices: 70848696--70848741 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
70848686 ACTAAAAAAA
*
70848696 TTAAAAAATTATAAAA-ATAC
1 TTAAAAAAATATAAAATATAC
70848716 TTAAAAAAATATAAAATATAC
1 TTAAAAAAATATAAAATATAC
*
70848737 ATAAA
1 TTAAA
70848742 TTATCATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.28
Consensus pattern (21 bp):
TTAAAAAAATATAAAATATAC
Found at i:70869151 original size:20 final size:20
Alignment explanation
Indices: 70869119--70869157 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
70869109 ATTTAATGGT
70869119 TATATTTAAATATT-TAAAA
1 TATATTTAAATATTCTAAAA
*
70869138 TATAGTTTATATATTCTAAA
1 TATA-TTTAAATATTCTAAA
70869158 TAAATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TATATTTAAATATTCTAAAA
Found at i:70872075 original size:47 final size:47
Alignment explanation
Indices: 70872022--70872116 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
70872012 TAAATGTTAC
70872022 TTCTATTTCAATTTGATCTTATTTGATTCTTTTAATAGTACACAGAT
1 TTCTATTTCAATTTGATCTTATTTGATTCTTTTAATAGTACACAGAT
70872069 TTCTATTTCAATTTGATCTTATTTGATTCTTTTAATAGTACACAGAT
1 TTCTATTTCAATTTGATCTTATTTGATTCTTTTAATAGTACACAGAT
70872116 T
1 T
70872117 AATTTGATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (47 bp):
TTCTATTTCAATTTGATCTTATTTGATTCTTTTAATAGTACACAGAT
Found at i:70872631 original size:31 final size:29
Alignment explanation
Indices: 70872577--70872649 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 29
70872567 AGAGTCTAAT
*
70872577 TGAAAATTTTAAAGTTTTTATGAGATTAA
1 TGAAAATTTTAAAGTTTTAATGAGATTAA
* *
70872606 TGAGAATTTTCAAACGTTTTAATGAGCTTAA
1 TGAAAATTTT-AAA-GTTTTAATGAGATTAA
*
70872637 TTAAAATTTTAAA
1 TGAAAATTTTAAA
70872650 AAAAATTAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 9 0.24
30 6 0.16
31 22 0.59
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.42
Consensus pattern (29 bp):
TGAAAATTTTAAAGTTTTAATGAGATTAA
Found at i:70876815 original size:9 final size:9
Alignment explanation
Indices: 70876801--70876835 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
70876791 TGAATTTCTA
70876801 TTTTAAAAC
1 TTTTAAAAC
70876810 TTTTAAAAC
1 TTTTAAAAC
70876819 TTTTAAAAC
1 TTTTAAAAC
70876828 TTTCTAAA
1 TTT-TAAA
70876836 TGATGAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 21 0.84
10 4 0.16
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (9 bp):
TTTTAAAAC
Found at i:70880857 original size:16 final size:16
Alignment explanation
Indices: 70880823--70880875 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
70880813 ATGGCATTAG
70880823 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
70880839 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* * *
70880855 TCATACCATACTCAAA
1 TCATGCAATACTCAAT
70880871 TCATG
1 TCATG
70880876 AGTATATAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 5 0.17
16 20 0.69
17 4 0.14
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:70881114 original size:40 final size:41
Alignment explanation
Indices: 70881060--70881171 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 41
70881050 ACCAGTTTGG
* **
70881060 CACCTAGTGCCTCATCGGAT-AATTTGAAGTAGTAAATTGA
1 CACCTAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
* * *
70881100 CACCCAGTGTCTCATTGAATAAATCCGAAGTAGTAAATTGA
1 CACCTAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
*
70881141 CACCTAGTGTCTCATCGGTTAAA-CCGAAGTA
1 CACCTAGTGTCTCATCGGATAAATCCGAAGTA
70881172 AGTTGGAACC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
40 24 0.39
41 37 0.61
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (41 bp):
CACCTAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGA
Found at i:70882120 original size:25 final size:24
Alignment explanation
Indices: 70882088--70882144 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
70882078 TTTTTTTTTC
70882088 TTTC-TTTTCTTTCTTTCATTTCTG
1 TTTCATTTTCTTTCTTTC-TTTCTG
* *
70882112 TTTCATTTTGTTTCTTTCTTTCTT
1 TTTCATTTTCTTTCTTTCTTTCTG
70882136 TATTCATTT
1 T-TTCATTT
70882145 ACTTATTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 10 0.34
25 19 0.66
ACGTcount: A:0.07, C:0.18, G:0.04, T:0.72
Consensus pattern (24 bp):
TTTCATTTTCTTTCTTTCTTTCTG
Found at i:70882226 original size:29 final size:28
Alignment explanation
Indices: 70882162--70882226 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
70882152 TGTTTTGTTT
* * *
70882162 TATTATATTTACTTTATTATTAGTATAT
1 TATTATATTTACTTAAATATTAGTATAA
70882190 TATATATATTTACTTAAATATTAAGTA-ACA
1 TAT-TATATTTACTTAAATATT-AGTATA-A
70882220 TATTATA
1 TATTATA
70882227 ATATATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 3 0.10
29 21 0.68
30 7 0.23
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (28 bp):
TATTATATTTACTTAAATATTAGTATAA
Found at i:70899926 original size:29 final size:30
Alignment explanation
Indices: 70899892--70899953 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
70899882 ATTTATTTTA
70899892 TTGTTAATTTTGTTATT-TTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
70899921 TTGTTAATTTTGTTATTATTTTAGATACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
70899951 TTG
1 TTG
70899954 ATTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:70905603 original size:12 final size:12
Alignment explanation
Indices: 70905586--70905610 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70905576 TAATTGAACC
70905586 TATTTTATTTAA
1 TATTTTATTTAA
70905598 TATTTTATTTAA
1 TATTTTATTTAA
70905610 T
1 T
70905611 TAAATTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATTTTATTTAA
Found at i:70912424 original size:29 final size:29
Alignment explanation
Indices: 70912381--70912462 Score: 121
Period size: 29 Copynumber: 2.8 Consensus size: 29
70912371 TATATATGTG
*
70912381 AATTATCGAGCACTAAGTGCGCGAAG-AA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
70912409 AGATTAACGAGCACTAAGTGTGCGAAGTAA
1 A-ATTATCGAGCACTAAGTGTGCGAAGTAA
*
70912439 AACTATCGAGCACTAAGTGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
70912463 TCTCATTGCA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
28 1 0.02
29 44 0.92
30 3 0.06
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.20
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:70919989 original size:29 final size:29
Alignment explanation
Indices: 70919946--70920056 Score: 179
Period size: 29 Copynumber: 3.8 Consensus size: 29
70919936 TATATATATG
70919946 AATTATCGAGCACTAAGTGTGCGAAG-AA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
70919974 AGATTAACGAGCACTAAGTGTGCGAAGTAA
1 A-ATTATCGAGCACTAAGTGTGCGAAGTAA
*
70920004 AATTATTGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
70920033 AACTATCGAGCACTAAGTGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
70920057 TCTCATTGCA
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
28 1 0.01
29 72 0.95
30 3 0.04
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:70921764 original size:16 final size:16
Alignment explanation
Indices: 70921743--70921773 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
70921733 TATTTCTATG
70921743 TCATCAGATATTTTCC
1 TCATCAGATATTTTCC
70921759 TCATCAGATATTTTC
1 TCATCAGATATTTTC
70921774 AGACTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.45
Consensus pattern (16 bp):
TCATCAGATATTTTCC
Found at i:70930601 original size:26 final size:26
Alignment explanation
Indices: 70930562--70930611 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
70930552 GCAAAAATTC
70930562 CTTCTGAAATTAAACCGT-CACATATA
1 CTTCTGAAATTAAA-CGTACACATATA
70930588 CTTCTGAAGA-TAAACGTACACATA
1 CTTCTGAA-ATTAAACGTACACATA
70930612 GAATGCCCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 3 0.14
26 18 0.82
27 1 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
CTTCTGAAATTAAACGTACACATATA
Found at i:70933215 original size:39 final size:40
Alignment explanation
Indices: 70933142--70933297 Score: 172
Period size: 39 Copynumber: 4.0 Consensus size: 40
70933132 GAATTCAATC
* * *
70933142 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATAGT
1 ACCAACACGAAGCCTGCGGGACCTTAAGCCCGGATATAGT
* *
70933182 ACCAATACGAAGCCTGC-GGACCTTAAGTCCGGATATAGT
1 ACCAACACGAAGCCTGCGGGACCTTAAGCCCGGATATAGT
* * * * *
70933221 ACCAGCACGAAGCCTGC-GGATCTTAAGTCCGGATACAAT
1 ACCAACACGAAGCCTGCGGGACCTTAAGCCCGGATATAGT
* * * *
70933260 TCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATA
1 ACCAACACGAAGCCTGCGGGACCTTAAGCCCGGATATA
70933298 CATCAAATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 70 0.71
40 29 0.29
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (40 bp):
ACCAACACGAAGCCTGCGGGACCTTAAGCCCGGATATAGT
Found at i:70945265 original size:22 final size:23
Alignment explanation
Indices: 70945240--70945297 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
70945230 CAACCAAACC
70945240 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
70945262 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
*
70945285 ACTTCATCACATA
1 AATTCAT-ACATA
70945298 CCCAAAACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 6 0.20
23 19 0.63
24 5 0.17
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:70949069 original size:17 final size:18
Alignment explanation
Indices: 70949037--70949079 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
70949027 AACTTTTTCA
*
70949037 CAATTTAGTCCTAAAAAT
1 CAATTTAGTACTAAAAAT
70949055 CAATTTA-TACTAAAAA-
1 CAATTTAGTACTAAAAAT
70949071 C-ATTTAGTA
1 CAATTTAGTA
70949080 AATCCATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 5 0.22
16 3 0.13
17 8 0.35
18 7 0.30
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.35
Consensus pattern (18 bp):
CAATTTAGTACTAAAAAT
Found at i:70956421 original size:29 final size:28
Alignment explanation
Indices: 70956375--70956432 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
70956365 GCCCAAATAT
70956375 TATGTTATAAAAATATTATATTAATTATA
1 TATGTTATAAAAATATTATA-TAATTATA
* *
70956404 TATGTTA-AATAATAATTATATATTTATA
1 TATGTTATAAAAAT-ATTATATAATTATA
70956432 T
1 T
70956433 TTATATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (28 bp):
TATGTTATAAAAATATTATATAATTATA
Found at i:70956719 original size:18 final size:18
Alignment explanation
Indices: 70956696--70956735 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
70956686 ATTATATTAT
*
70956696 TAAAAAATTAATTTTAAA
1 TAAAAAATTAATCTTAAA
70956714 TAAAAAATTAATCTTAAA
1 TAAAAAATTAATCTTAAA
70956732 -AAAA
1 TAAAA
70956736 TCAAATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAAATTAATCTTAAA
Found at i:70960540 original size:6 final size:6
Alignment explanation
Indices: 70960529--70960573 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
70960519 TATCCAAAAG
* *
70960529 AAATAT AAATAT AAACAT ATATAT AAATAT ACATATAT AAATAT A
1 AAATAT AAATAT AAATAT AAATAT AAATAT A-A-ATAT AAATAT A
70960574 TGTAAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 26 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATAT
Found at i:70960564 original size:14 final size:14
Alignment explanation
Indices: 70960547--70960573 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70960537 ATATAAACAT
70960547 ATATATAAATATAC
1 ATATATAAATATAC
70960561 ATATATAAATATA
1 ATATATAAATATA
70960574 TGTAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATATAAATATAC
Found at i:70960564 original size:24 final size:24
Alignment explanation
Indices: 70960529--70960587 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
70960519 TATCCAAAAG
70960529 AAATATAAATATA-AACATATATAT
1 AAATATAAATATATAA-ATATATAT
* *
70960553 AAATATACATATATAAATATATGT
1 AAATATAAATATATAAATATATAT
*
70960577 AAA-AAAAATAT
1 AAATATAAATAT
70960588 TTTAGATCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 6 0.20
24 22 0.73
25 2 0.07
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (24 bp):
AAATATAAATATATAAATATATAT
Found at i:70962929 original size:16 final size:16
Alignment explanation
Indices: 70962892--70962937 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
70962882 TCGGAAAAAG
*
70962892 CCGAAAAGCCGAAATG
1 CCGAAAAGCCGAAATA
70962908 CCGAAAAGCCGAAATA
1 CCGAAAAGCCGAAATA
** *
70962924 TTGAAAGGCCGAAA
1 CCGAAAAGCCGAAA
70962938 GTTTGGCTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.46, C:0.22, G:0.24, T:0.09
Consensus pattern (16 bp):
CCGAAAAGCCGAAATA
Found at i:70962938 original size:8 final size:8
Alignment explanation
Indices: 70962887--70962921 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
70962877 GTAGATCGGA
70962887 AAAAGCCG
1 AAAAGCCG
70962895 AAAAGCCG
1 AAAAGCCG
*
70962903 AAATGCCG
1 AAAAGCCG
70962911 AAAAGCCG
1 AAAAGCCG
70962919 AAA
1 AAA
70962922 TATTGAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.51, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:70963085 original size:30 final size:30
Alignment explanation
Indices: 70963051--70963109 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
70963041 TAAAAATTAC
*
70963051 ATTTTTACCCCTAAACTTTTCCTAAATTTA
1 ATTTTGACCCCTAAACTTTTCCTAAATTTA
* **
70963081 ATTTTGACCCTTAAACTTTTTTTAAATTT
1 ATTTTGACCCCTAAACTTTTCCTAAATTT
70963110 CACTTAGACC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.51
Consensus pattern (30 bp):
ATTTTGACCCCTAAACTTTTCCTAAATTTA
Found at i:70963120 original size:30 final size:30
Alignment explanation
Indices: 70963057--70963138 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
70963047 TTACATTTTT
* * *
70963057 ACCCCTAAACTTTTCCTAAATTTAATTTTG
1 ACCCTTAAACTTTTCCTAAATTTAACTTAG
** *
70963087 ACCCTTAAACTTTTTTTAAATTTCACTTAG
1 ACCCTTAAACTTTTCCTAAATTTAACTTAG
*
70963117 ACCCTTAAA-ATTTCCTTAAATT
1 ACCCTTAAACTTTTCC-TAAATT
70963139 CCATTTTAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 3 0.07
30 39 0.93
ACGTcount: A:0.32, C:0.22, G:0.02, T:0.44
Consensus pattern (30 bp):
ACCCTTAAACTTTTCCTAAATTTAACTTAG
Found at i:70963400 original size:14 final size:15
Alignment explanation
Indices: 70963383--70963423 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
70963373 GAGAAAAAAG
70963383 AGCAAAAAAAATT-C
1 AGCAAAAAAAATTCC
*
70963397 AGCAAAAAAATTTTCC
1 AGCAAAAAAA-ATTCC
70963413 AGCAAAAAAAA
1 AGCAAAAAAAA
70963424 ACAACAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.43
15 2 0.09
16 11 0.48
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (15 bp):
AGCAAAAAAAATTCC
Found at i:70974031 original size:27 final size:27
Alignment explanation
Indices: 70974001--70974178 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70973991 ATATTGAGTC
* * * *
70974001 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70974028 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70974055 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70974083 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70974110 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70974137 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70974164 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70974179 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70974140 original size:82 final size:81
Alignment explanation
Indices: 70974022--70974177 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70974012 TGCTATATAA
* *
70974022 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70974087 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70974104 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70974168 CACTTAGTGC
65 CACTTAGTGC
70974178 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70974290 original size:27 final size:27
Alignment explanation
Indices: 70974255--70974329 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
70974245 GTGCCGCATG
*
70974255 GTCAATTCGCACACTTAGTGCATCATA
1 GTCAATTCGCACACTTAGTGCAACATA
* *
70974282 TTCATTTCGCACACTTAGTGCAACATA
1 GTCAATTCGCACACTTAGTGCAACATA
*
70974309 GTCAAATCGCACACTTAGTGC
1 GTCAATTCGCACACTTAGTGC
70974330 TGTACAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (27 bp):
GTCAATTCGCACACTTAGTGCAACATA
Found at i:70974359 original size:152 final size:152
Alignment explanation
Indices: 70974090--70974402 Score: 626
Period size: 152 Copynumber: 2.1 Consensus size: 152
70974080 ACTCGCACAC
70974090 TTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACA
1 TTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACA
70974155 TAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTC
66 TAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTC
70974220 ATAAATGGTTATACCCGCACGT
131 ATAAATGGTTATACCCGCACGT
70974242 TTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACA
1 TTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACA
70974307 TAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTC
66 TAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTC
70974372 ATAAATGGTTATACCCGCACGT
131 ATAAATGGTTATACCCGCACGT
70974394 TTAGTGCCG
1 TTAGTGCCG
70974403 AGATCAACAA
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
152 161 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (152 bp):
TTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACA
TAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTC
ATAAATGGTTATACCCGCACGT
Found at i:70974829 original size:14 final size:14
Alignment explanation
Indices: 70974810--70974839 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70974800 ATGGCATACT
70974810 TATGTATATATATA
1 TATGTATATATATA
70974824 TATGTATATATATA
1 TATGTATATATATA
70974838 TA
1 TA
70974840 CTTCGGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:70982956 original size:87 final size:86
Alignment explanation
Indices: 70982828--70983389 Score: 566
Period size: 87 Copynumber: 6.7 Consensus size: 86
70982818 TTTGTCAAAA
* * *
70982828 AAAAAGTCGACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
* *
70982893 ATGTTTTTCAGTTTATATTTTGT
65 CTGTTTTTCAATTTATATTTT-T
* *
70982916 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
70982981 TGTTCTT-AA-TGACTGTTTTT
66 TGTTTTTCAATTTA-TATTTTT
70983001 --AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
70983064 TGTTTTTTCCAATCTATATGTTTC
66 TG-TTTTT-CAATTTATAT-TTTT
* * *
70983088 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGTTGAGGTATTTTCGATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
70983153 CGTTTTTCAATTTATGTTTTT
66 TGTTTTTCAATTTATATTTTT
* * * * *
70983174 CAAAAATCAATTCATATTACTAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAA-TT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
70983238 C-------C--TTT-T-TTTTT
65 CTGTTTTTCAATTTATATTTTT
* * ** * **
70983249 TAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
70983314 TGTCTTTC-----A-A-----
66 TGTTTTTCAATTTATATTTTT
* *
70983324 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
70983389 T
64 T
70983390 TTTGCTTTTT
Statistics
Matches: 400, Mismatches: 53, Indels: 53
0.79 0.10 0.10
Matches are distributed among these distances:
74 49 0.12
75 42 0.10
76 1 0.00
77 24 0.06
79 1 0.00
82 1 0.00
83 63 0.16
84 4 0.01
85 3 0.01
86 16 0.04
87 125 0.31
88 10 0.03
89 61 0.15
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATATTTTT
Found at i:70983038 original size:170 final size:174
Alignment explanation
Indices: 70982837--70983237 Score: 562
Period size: 172 Copynumber: 2.3 Consensus size: 174
70982827 AAAAAAGTCG
*
70982837 ACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTATG-TTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTATGTTTTTT
* * * * *
70982901 -CAGTTTATAT-TTTGTAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
66 CCAATCTATATGTTT-CAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCT
* *
70982964 GAGGTATTTTTAATTTCTGTTCTT-AA-TGACTGTTTTT-AAATCA
130 GAGGTATTTTCAATTTCCGTTCTTCAATTGA-TGTTTTTAAAATCA
* *
70983007 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTATGTTTTTT
*
70983072 CCAATCTATATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGTTG
66 CCAATCTATATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCTG
* * *
70983137 AGGTATTTTCGATTTCCGTTTTTCAATTTATGTTTTTCAAAAATCA
131 AGGTATTTTCAATTTCCGTTCTTCAATTGATGTTTTT--AAAATCA
* * * *
70983183 ATTCATATTACTAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
70983238 CCTTTTTTTT
Statistics
Matches: 204, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
170 56 0.27
171 5 0.02
172 73 0.36
173 12 0.06
174 2 0.01
176 56 0.27
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (174 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTATGTTTTTT
CCAATCTATATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCTG
AGGTATTTTCAATTTCCGTTCTTCAATTGATGTTTTTAAAATCA
Found at i:70983201 original size:259 final size:251
Alignment explanation
Indices: 70982828--70983316 Score: 669
Period size: 259 Copynumber: 1.9 Consensus size: 251
70982818 TTTGTCAAAA
* *
70982828 AAAAAGTCGACTCATATTGCGAGAGGGGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAGTCAACTCATATTGCGAGAGGGGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* * *
70982893 ATGTTTTTCAGTTTATATTTTGTAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
66 ACGTTTTTCAATTTATATTTTGTAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCTCAGGA
* *
70982958 CACGCTGAGGTATTTTTAATTTCTGTTCTTAATGACTGTTTTTAAA-TCAACTCATATTGCGAGA
131 CACGCTGAGGTAATTTCAA-TTC----CTT--T---TGTTTTTAAATTCAACTCATATTGCGAGA
** * *
70983022 GGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTTCCAATCTATATGTTT
186 AATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCTGTTTTTTCCAATCTATATGTTT
70983087 C
251 C
* * * *
70983088 AAAAA-TCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGTTGAGGTATTTTCGATTT
1 AAAAAGTCAACTCATATTGCGAGAGGGGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
* * * *
70983152 CCGTTTTTCAATTTATGTTTT-TCAAAAATCAATTCATATTACTAGAGGTGAGTTGAGCCTCGGG
66 ACGTTTTTCAATTTATATTTTGT-AAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCTCAGG
*
70983216 ACACGCTGAGGTAATTTCAATTCCTTTTTTTTTTAAATTCAACTCATATTGCGAGAAATGAGTTG
130 ACACGCTGAGGTAATTTCAATTCCTTTTGTTTTTAAATTCAACTCATATTGCGAGAAATGAGTTG
*
70983281 AGCCTCAAGACACATTGAGGTATTTTCAATTTCTGT
195 AGCCTCAAGACACACTGAGGTATTTTCAATTTCTGT
70983317 CTTTCAAAAA
Statistics
Matches: 206, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
249 9 0.04
250 58 0.28
252 1 0.00
254 3 0.01
258 4 0.02
259 126 0.61
260 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (251 bp):
AAAAAGTCAACTCATATTGCGAGAGGGGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
ACGTTTTTCAATTTATATTTTGTAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTCCTTTTGTTTTTAAATTCAACTCATATTGCGAGAAATGAGTTGA
GCCTCAAGACACACTGAGGTATTTTCAATTTCTGTTTTTTCCAATCTATATGTTTC
Found at i:70983360 original size:75 final size:74
Alignment explanation
Indices: 70983156--70983434 Score: 292
Period size: 74 Copynumber: 3.7 Consensus size: 74
70983146 CGATTTCCGT
* * * * *
70983156 TTTTCAATTTATGTTTTTC-AAAAATCAATTCATATTACTAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
70983220 GCTGAGGTA
66 GCTGAGGTA
* * * *** * ** *
70983229 ATTTCAATTCCTTTTTTTTTTAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
**
70983294 ATTGAGGTA
66 GCTGAGGTA
* * *
70983303 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTAGGTCA
1 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
70983368 CACGCTGAGGTA
63 CACGCTGAGGTA
* *
70983380 TTTTCAATTTTTTGCTTTTTCAAAAGATCAACTCATAATT-CGAGAGGTGAGTTGA
1 TTTTCAA-TTTCTG-TTTTTCAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGA
70983435 ACTTCGGGTC
Statistics
Matches: 164, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
73 14 0.09
74 57 0.35
75 34 0.21
77 18 0.11
78 33 0.20
79 8 0.05
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTA
Found at i:70983470 original size:78 final size:78
Alignment explanation
Indices: 70983296--70983469 Score: 191
Period size: 78 Copynumber: 2.3 Consensus size: 78
70983286 CAAGACACAT
* * *
70983296 TGAGGTATTTTCAA-TTTCTG-TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGC
1 TGAGCTATTTTCAATTTTTTGCTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAA-C
70983359 CTTAGGTCACACGC
65 CTTAGGTCACACGC
* *
70983373 TGAGGTATTTTCAATTTTTTGCTTTTTC-AAAAGATCAACTCATAATT-CGAGAGGTGAGTTGAA
1 TGAGCTATTTTCAATTTTTTGCTTTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTT-AA
* *
70983436 -CTTCGGGTCGCATC-C
64 CCTT-AGGTCACA-CGC
70983451 -GAGCTATTTTCAATTTTTT
1 TGAGCTATTTTCAATTTTTT
70983470 TTACAATAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
77 35 0.41
78 39 0.46
79 11 0.13
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (78 bp):
TGAGCTATTTTCAATTTTTTGCTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAACC
TTAGGTCACACGC
Found at i:70983698 original size:30 final size:30
Alignment explanation
Indices: 70983658--70983768 Score: 127
Period size: 30 Copynumber: 3.7 Consensus size: 30
70983648 CAAAAAATAA
* * *
70983658 AAATTGCATTTTTACCCCTAAACTTT-TCCT
1 AAATTTCATTTTGACCCCTAAACTTTCT-TT
*
70983688 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCTTT
* *
70983718 AAATTTCACTTAGACCCCTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCTTT
* *
70983748 AAATTACATTTT-AACCCTAAA
1 AAATTTCATTTTGACCCCTAAA
70983769 TTTTGTAAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
29 8 0.12
30 60 0.87
31 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.03, T:0.42
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCTTT
Found at i:70984015 original size:15 final size:16
Alignment explanation
Indices: 70983997--70984038 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
70983987 GAGAAAAAAG
70983997 AGCAAAAAAAAATT-C
1 AGCAAAAAAAAATTCC
**
70984012 AGCAAAAAAATTTTCC
1 AGCAAAAAAAAATTCC
70984028 AGCAAAAAAAA
1 AGCAAAAAAAA
70984039 CAACAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (16 bp):
AGCAAAAAAAAATTCC
Found at i:70984850 original size:17 final size:17
Alignment explanation
Indices: 70984792--70984852 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
70984782 TCCGAATTTA
70984792 ATATATATATTTT-T--
1 ATATATATATTTTGTAC
*
70984806 ATA-ACTATATTATGTAC
1 ATATA-TATATTTTGTAC
70984823 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
70984840 ATATCAT-TATTTT
1 ATAT-ATATATTTT
70984853 ATATTATTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.26
15 1 0.03
17 24 0.62
18 3 0.08
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:70984948 original size:21 final size:21
Alignment explanation
Indices: 70984924--70985005 Score: 55
Period size: 24 Copynumber: 3.9 Consensus size: 21
70984914 TTTATTGTAG
70984924 ATATTATTATTATTATTACAT
1 ATATTATTATTATTATTACAT
*
70984945 ATA-T-TTATTA-TA-TGCAT
1 ATATTATTATTATTATTACAT
*
70984962 ATATATATGTATTTTTATGTACAT
1 ATAT-TAT-TATTATTAT-TACAT
* *
70984986 ATTATTCTTTTATATTATTA
1 A-TATTATTAT-TATTATTA
70985006 TTACCAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
17 7 0.15
18 2 0.04
19 7 0.15
20 2 0.04
21 7 0.15
22 2 0.04
23 4 0.09
24 12 0.26
25 3 0.07
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (21 bp):
ATATTATTATTATTATTACAT
Found at i:70984998 original size:19 final size:19
Alignment explanation
Indices: 70984905--70984998 Score: 52
Period size: 19 Copynumber: 4.8 Consensus size: 19
70984895 ACATTTCCTA
*
70984905 ATATT-TTCTTTTATTGTAG
1 ATATTATTCTTTTA-TGTAC
*
70984924 ATATTATTATTATTAT-TAC
1 ATATTATTCTT-TTATGTAC
* *
70984943 ATA-TATT-TATTATATGCAT
1 ATATTATTCT-TT-TATGTAC
*
70984962 ATATATATGTATTTTTATGTAC
1 ATAT-TAT-T-CTTTTATGTAC
70984984 ATATTATTCTTTTAT
1 ATATTATTCTTTTAT
70984999 ATTATTATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
17 2 0.03
18 8 0.14
19 20 0.34
20 6 0.10
21 9 0.16
22 10 0.17
23 2 0.03
24 1 0.02
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
ATATTATTCTTTTATGTAC
Found at i:70985930 original size:28 final size:29
Alignment explanation
Indices: 70985898--70986049 Score: 134
Period size: 29 Copynumber: 5.3 Consensus size: 29
70985888 GTGAGCATGA
* * *
70985898 ATAT-AATGTGATTTGGGCAGGATGGGCC
1 ATATGAATGTGAATTGGGCCGAATGGGCC
* * *
70985926 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCGAATGGGCC
*
70985954 ATATGAATGTCAATTGGGCCTG-ATGGGCC
1 ATATGAATGTGAATTGGGCC-GAATGGGCC
* * *
70985983 ATATGAACGTGAATTGGGCTGAATGGGCA
1 ATATGAATGTGAATTGGGCCGAATGGGCC
* *
70986012 ATAT-AA-GTGAGATTGGGCCTAGTGGGCC
1 ATATGAATGTGA-ATTGGGCCGAATGGGCC
*
70986040 ATATGCATGT
1 ATATGAATGT
70986050 ATGTAGGGGT
Statistics
Matches: 99, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
27 4 0.04
28 45 0.45
29 48 0.48
30 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCGAATGGGCC
Found at i:70986027 original size:57 final size:58
Alignment explanation
Indices: 70985918--70986044 Score: 149
Period size: 57 Copynumber: 2.2 Consensus size: 58
70985908 ATTTGGGCAG
*
70985918 GATGGGCCATAT-AAATGAGATTGGGCCTAATGGGCCATATGAATGTCAATTGGGCCT
1 GATGGGCCATATGAAATGAGATTGGGCCTAATGGGCAATATGAATGTCAATTGGGCCT
* *
70985975 GATGGGCCATATGAACGTGA-ATTGGG-CTGAATGGGCAATAT-AA-GTGAGATTGGGCCT
1 GATGGGCCATATGAA-ATGAGATTGGGCCT-AATGGGCAATATGAATGTCA-ATTGGGCCT
70986032 -AGTGGGCCATATG
1 GA-TGGGCCATATG
70986045 CATGTATGTA
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
56 4 0.06
57 36 0.58
58 19 0.31
59 3 0.05
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (58 bp):
GATGGGCCATATGAAATGAGATTGGGCCTAATGGGCAATATGAATGTCAATTGGGCCT
Found at i:70990698 original size:38 final size:38
Alignment explanation
Indices: 70990647--70990766 Score: 177
Period size: 38 Copynumber: 3.2 Consensus size: 38
70990637 TTTAAGCTCA
* * * *
70990647 GATATAATACCAGCACTAGGCCTGTGGGATTGAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
*
70990685 GATATAATACCAGCACGAAGCCTGCGAGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
*
70990723 GATATAATACCAGCACGAAGCCTGCAGGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
*
70990761 AATATA
1 GATATA
70990767 TTTCTAGCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 74 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (38 bp):
GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
Found at i:70990785 original size:76 final size:78
Alignment explanation
Indices: 70990615--70990804 Score: 172
Period size: 76 Copynumber: 2.5 Consensus size: 78
70990605 GAATCCAGTC
* * * * * * * **
70990615 ACCAACACAAAACCTACGAG-AGTTTAAGCTCAGATATAATACCAGCACTAGGCCTGTGGGATTG
1 ACCAGCACGAAACCTGCGAGTA-TTTAAGCCCGGATATAATACCAGCACGAAGCCTGCAGGATTG
*
70990679 AACCCGGATATAAT
65 AACCCGAATATAAT
* *
70990693 ACCAGCACGAAGCCTGCGAG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTA
1 ACCAGCACGAAACCTGCGAGTATTTAAGCCCGGATATAATACCAGCACGAAGCCTGCAGGATTGA
*
70990756 ACCCGAATATATT
66 ACCCGAATATAAT
* * * * *
70990769 TCTAGCA-TATAACCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AACCTGCGAGTATTTAAGCCCGGATA
70990805 CACATCAAAT
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
75 1 0.01
76 54 0.60
77 10 0.11
78 25 0.28
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.22
Consensus pattern (78 bp):
ACCAGCACGAAACCTGCGAGTATTTAAGCCCGGATATAATACCAGCACGAAGCCTGCAGGATTGA
ACCCGAATATAAT
Found at i:70997940 original size:76 final size:78
Alignment explanation
Indices: 70997809--70997969 Score: 218
Period size: 76 Copynumber: 2.1 Consensus size: 78
70997799 GAATCCAGTC
* * * * *
70997809 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTA
1 ACCAGCACAAAACCTACGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCAGGATTTA
70997874 ACCCAGATATAAT
66 ACCCAGATATAAT
* *
70997887 ACCAGCACGAAACCTACGGGA-TTTAA-CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTA
1 ACCAGCACAAAACCTACGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCAGGATTTA
* *
70997950 ACCCGGATATATT
66 ACCCAGATATAAT
*
70997963 TCCAGCA
1 ACCAGCA
70997970 TATAGCCTGT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
76 49 0.67
77 5 0.07
78 19 0.26
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (78 bp):
ACCAGCACAAAACCTACGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCAGGATTTA
ACCCAGATATAAT
Found at i:70997978 original size:38 final size:38
Alignment explanation
Indices: 70997809--70997969 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 38
70997799 GAATCCAGTC
* * * *
70997809 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
70997849 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
70997887 ACCAGCACGAAACCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
70997925 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
70997963 TCCAGCA
1 ACCAGCA
70997970 TATAGCCTGT
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 84 0.79
39 5 0.05
40 18 0.17
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:71001913 original size:13 final size:13
Alignment explanation
Indices: 71001891--71001921 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
71001881 TTGGTTTAGT
71001891 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
71001903 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
71001916 TTAGTT
1 TTAGTT
71001922 AATAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:71005830 original size:18 final size:18
Alignment explanation
Indices: 71005807--71005841 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71005797 AATCCTCCTA
*
71005807 TCTTTTTATTTTTATTTT
1 TCTTTTTATTTTCATTTT
71005825 TCTTTTTATTTTCATTT
1 TCTTTTTATTTTCATTT
71005842 CAATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTATTTTCATTTT
Found at i:71008733 original size:13 final size:13
Alignment explanation
Indices: 71008711--71008741 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
71008701 GTGGTTTAGT
71008711 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
71008723 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
71008736 TTAGTT
1 TTAGTT
71008742 AATAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:71016922 original size:19 final size:21
Alignment explanation
Indices: 71016894--71016934 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
71016884 AGTTGGTGTT
*
71016894 TACATGTGTA-AAAATA-ATA
1 TACATATGTATAAAATACATA
71016913 TACATATGTATAAAATACATA
1 TACATATGTATAAAATACATA
71016934 T
1 T
71016935 GAATAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.34
Consensus pattern (21 bp):
TACATATGTATAAAATACATA
Found at i:71016930 original size:15 final size:15
Alignment explanation
Indices: 71016906--71016944 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
71016896 CATGTGTAAA
*
71016906 AATAATATACATATG
1 AATAAAATACATATG
*
71016921 TATAAAATACATATG
1 AATAAAATACATATG
71016936 AATAAAATA
1 AATAAAATA
71016945 ATAAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (15 bp):
AATAAAATACATATG
Found at i:71019004 original size:50 final size:46
Alignment explanation
Indices: 71018933--71019054 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
71018923 TGTCTTTGAC
** * *
71018933 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTAAT
* * *
71018983 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGGCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
71019029 ATGGACTTACATGGCTCATTCCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
71019055 AACCCCAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 35 0.55
50 29 0.45
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
Found at i:71020449 original size:19 final size:18
Alignment explanation
Indices: 71020416--71020454 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
71020406 CAAATTACAG
71020416 AACCCAATTTCAAACCCA
1 AACCCAATTTCAAACCCA
*
71020434 AACCCAAATTTTAAACCCA
1 AACCC-AATTTCAAACCCA
71020453 AA
1 AA
71020455 ACTGAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (18 bp):
AACCCAATTTCAAACCCA
Found at i:71024702 original size:19 final size:19
Alignment explanation
Indices: 71024680--71024727 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
71024670 TCATCCCATG
* *
71024680 CATTTTCATTGCGTTGCAT
1 CATTTGCATTGCATTGCAT
71024699 CATTTGCATTGCATTGCAT
1 CATTTGCATTGCATTGCAT
71024718 CATTTGCATT
1 CATTTGCATT
71024728 AAATTTTCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (19 bp):
CATTTGCATTGCATTGCAT
Found at i:71027182 original size:8 final size:8
Alignment explanation
Indices: 71027169--71027221 Score: 56
Period size: 8 Copynumber: 6.5 Consensus size: 8
71027159 ACCTTCACAA
71027169 AAAAAAAG
1 AAAAAAAG
71027177 AAAAAAAG
1 AAAAAAAG
71027185 --AAAAAG
1 AAAAAAAG
71027191 AAAAAAAG
1 AAAAAAAG
*
71027199 AGAAAGAAG
1 A-AAAAAAG
71027208 AAAAGAAAAG
1 -AAA-AAAAG
71027218 AAAA
1 AAAA
71027222 GGAGAGGCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
6 6 0.16
8 16 0.42
9 11 0.29
10 5 0.13
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:71027190 original size:14 final size:14
Alignment explanation
Indices: 71027167--71027221 Score: 78
Period size: 14 Copynumber: 4.1 Consensus size: 14
71027157 AGACCTTCAC
71027167 AAAA-AAAAAGAAA
1 AAAAGAAAAAGAAA
71027180 AAAAGAAAAAGAAA
1 AAAAGAAAAAGAAA
* *
71027194 AAAAGAGAAAGAAG
1 AAAAGAAAAAGAAA
71027208 AAAAG-AAAAGAAA
1 AAAAGAAAAAGAAA
71027221 A
1 A
71027222 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
13 11 0.30
14 26 0.70
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:71027197 original size:22 final size:22
Alignment explanation
Indices: 71027169--71027216 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
71027159 ACCTTCACAA
71027169 AAAAAAAGA-AAAAAAGAAAAAG
1 AAAAAAAGAGAAAAAAG-AAAAG
*
71027191 AAAAAAAGAGAAAGAAGAAAAG
1 AAAAAAAGAGAAAAAAGAAAAG
71027213 AAAA
1 AAAA
71027217 GAAAAGGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
AAAAAAAGAGAAAAAAGAAAAG
Found at i:71028478 original size:64 final size:64
Alignment explanation
Indices: 71028400--71028523 Score: 185
Period size: 64 Copynumber: 1.9 Consensus size: 64
71028390 TCATTTATAA
* * * * *
71028400 CACATCTAGTTAGGAGCATTTGATTTATTTCGATCATAGCATACTAATTATTTGACATAAACAT
1 CACATCTAGTTAGGAACAATTGATTCATGTCGATCATAACATACTAATTATTTGACATAAACAT
* *
71028464 CACATCTAGTTAGGAACAATTGATTCATGTCGATCATAACATCCTAATTATTTGGCATAA
1 CACATCTAGTTAGGAACAATTGATTCATGTCGATCATAACATACTAATTATTTGACATAA
71028524 GCATAGGCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAACAATTGATTCATGTCGATCATAACATACTAATTATTTGACATAAACAT
Found at i:71030136 original size:49 final size:49
Alignment explanation
Indices: 71030050--71030295 Score: 285
Period size: 49 Copynumber: 5.0 Consensus size: 49
71030040 GTAGCTGAAT
* * * *
71030050 CTATCTTGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
71030099 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * *
71030149 CCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * **
71030199 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
71030249 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
71030296 TCACAATAGC
Statistics
Matches: 162, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.49
50 47 0.29
51 36 0.22
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:71030292 original size:100 final size:99
Alignment explanation
Indices: 71030064--71030295 Score: 331
Period size: 100 Copynumber: 2.3 Consensus size: 99
71030054 CTTGTACGCA
* * * *
71030064 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
** * *
71030129 GTACTACACACGTGACCTAACCATTTGATACACG
66 GTACTACACACACGACCTAACAATCTGATACACG
* *
71030163 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* *
71030228 TAGTACTACACATACGACC-AACAATCTGGTACACG
64 TAGTACTACACACACGACCTAACAATCTGATACACG
71030263 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
71030296 TCACAATAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 47 0.40
101 41 0.35
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACACGACCTAACAATCTGATACACG
Found at i:71030668 original size:35 final size:35
Alignment explanation
Indices: 71030617--71030683 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
71030607 ATATTTCATA
*
71030617 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
71030652 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
71030684 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:71030686 original size:19 final size:19
Alignment explanation
Indices: 71030629--71030686 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
71030619 AACAATCTTC
71030629 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
71030648 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
71030664 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
71030683 ATAT
1 ATAT
71030687 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:71030910 original size:30 final size:30
Alignment explanation
Indices: 71030876--71030936 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
71030866 CTTTAATACG
71030876 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
71030906 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
71030936 A
1 A
71030937 GCTCAGGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:71032304 original size:19 final size:19
Alignment explanation
Indices: 71032280--71032319 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
71032270 CAAATTACAT
*
71032280 AACCCAAATTTCAAACCCA
1 AACCCAAATTTAAAACCCA
71032299 AACCCAAATTTAAAACCCA
1 AACCCAAATTTAAAACCCA
71032318 AA
1 AA
71032320 ACCGAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.15
Consensus pattern (19 bp):
AACCCAAATTTAAAACCCA
Found at i:71032327 original size:19 final size:19
Alignment explanation
Indices: 71032283--71032327 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
71032273 ATTACATAAC
* *
71032283 CCAAATTTCAAACCCAAAC
1 CCAAATTTAAAACCCAAAA
71032302 CCAAATTTAAAACCCAAAA
1 CCAAATTTAAAACCCAAAA
*
71032321 CCGAATT
1 CCAAATT
71032328 AATCCTAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (19 bp):
CCAAATTTAAAACCCAAAA
Found at i:71032602 original size:16 final size:16
Alignment explanation
Indices: 71032579--71032613 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
71032569 GATTTTTGTA
*
71032579 TTATTTTTCTTTTTTCT
1 TTATTTTT-TTTTTGCT
71032596 TTATTTTTTTTTTGCT
1 TTATTTTTTTTTTGCT
71032612 TT
1 TT
71032614 TGGCTACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.83
Consensus pattern (16 bp):
TTATTTTTTTTTTGCT
Found at i:71039083 original size:39 final size:39
Alignment explanation
Indices: 71039025--71039193 Score: 248
Period size: 39 Copynumber: 4.3 Consensus size: 39
71039015 GCATGATATT
71039025 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* *
71039064 TGGAATTATATCCGAACTTAAGGTCTGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* * *
71039103 TAGAAATATATCCGGACTTAAGGTCTGCAGGCTATATGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
* * *
71039142 TGGAATTATAATCCGGACTTAAGGTTCGCAGGTTACATGC
1 TGGAATTAT-ATCCGGACTTAAGGTCCGCAGGCTATATGC
*
71039182 TGGAAATATATC
1 TGGAATTATATC
71039194 TGAGCTTAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 83 0.71
40 34 0.29
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (39 bp):
TGGAATTATATCCGGACTTAAGGTCCGCAGGCTATATGC
Found at i:71043732 original size:15 final size:14
Alignment explanation
Indices: 71043711--71043757 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
71043701 CGGGCTCACA
71043711 CAAAAAACA-AAAAC
1 CAAAAAA-ATAAAAC
71043725 CAAAAAAATAAAA-
1 CAAAAAAATAAAAC
71043738 CAAAAATAATAAAAC
1 CAAAAA-AATAAAAC
71043753 CAAAA
1 CAAAA
71043758 TAATTTAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.23
14 18 0.60
15 5 0.17
ACGTcount: A:0.79, C:0.15, G:0.00, T:0.06
Consensus pattern (14 bp):
CAAAAAAATAAAAC
Found at i:71043758 original size:14 final size:14
Alignment explanation
Indices: 71043720--71043761 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
71043710 ACAAAAAACA
*
71043720 AAAACCAAAAAAAT
1 AAAACCAAAATAAT
*
71043734 AAAACAAAAATAAT
1 AAAACCAAAATAAT
71043748 AAAACCAAAATAAT
1 AAAACCAAAATAAT
71043762 TTAAAGGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAACCAAAATAAT
Found at i:71045377 original size:38 final size:37
Alignment explanation
Indices: 71045282--71045395 Score: 99
Period size: 37 Copynumber: 3.0 Consensus size: 37
71045272 ATAAGATGCT
* * *
71045282 TTCATGTATATATTGTTTTATTATATATTGGTTTGTTATTC
1 TTCAT-TATATATTG-TTTATTCTTTATT--TTTATTATTC
*
71045323 TGTCA-TGTATATTGTTTATTCTTTATTTTTATTATATC
1 T-TCATTATATATTGTTTATTCTTTATTTTTATTAT-TC
*
71045361 TTCATTATATATTGTTTA--CATTGATTTTTATTATT
1 TTCATTATATATTGTTTATTC-TTTATTTTTATTATT
71045396 GTATGTATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
36 2 0.03
37 23 0.37
38 15 0.24
39 11 0.17
40 8 0.13
41 1 0.02
42 3 0.05
ACGTcount: A:0.23, C:0.06, G:0.09, T:0.62
Consensus pattern (37 bp):
TTCATTATATATTGTTTATTCTTTATTTTTATTATTC
Found at i:71053009 original size:39 final size:40
Alignment explanation
Indices: 71052966--71053264 Score: 360
Period size: 39 Copynumber: 7.6 Consensus size: 40
71052956 TCCTCGTTCA
* * * * *
71052966 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
71053005 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
71053045 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
71053085 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
71053124 AATGCCTTC-GGACTTAACCCGGA-TTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
71053162 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
71053201 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
71053241 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
71053265 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 20, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
38 38 0.16
39 109 0.46
40 80 0.34
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:71053067 original size:79 final size:78
Alignment explanation
Indices: 71052966--71053225 Score: 344
Period size: 79 Copynumber: 3.3 Consensus size: 78
71052956 TCCTCGTTCA
* * * * *
71052966 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCACACGAATGCCTTC-GGACTTAACCCGGAT
*
71053030 TTAACAACTCGCACG
64 TTAATAACTCGCACG
* *
71053045 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGACTTAACCCGGATT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGACTTAACCCGGATT
71053110 TAATAACTCGCACG
65 TAATAACTCGCACG
*
71053124 AATGCCTTCGGACTTAACCCGGA-TTAATAACTCGCACGAATGCCTTCGGACTTAACCCGGATTT
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGACTTAACCCGGATTT
* * *
71053188 AGTATCTCGCACA
66 AATAACTCGCACG
* *
71053201 AAGGCCTTCGGATCTTAATCCGGAT
1 AATGCCTTCGGA-CTTAACCCGGAT
71053226 ATATTCACTT
Statistics
Matches: 164, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
77 61 0.37
78 24 0.15
79 70 0.43
80 9 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (78 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGACTTAACCCGGATTT
AATAACTCGCACG
Found at i:71061024 original size:40 final size:40
Alignment explanation
Indices: 71060926--71061228 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
71060916 TCCTCGTTCA
* * * * *
71060926 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
71060965 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
71061005 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
71061045 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
71061085 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
71061125 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
71061165 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
71061205 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
71061229 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:71069112 original size:40 final size:40
Alignment explanation
Indices: 71069019--71069287 Score: 274
Period size: 40 Copynumber: 6.8 Consensus size: 40
71069009 CAGAGTTATC
* * * * * *
71069019 AAGTATAAACAGGGGCATGGAAGTGCATTCA-GAGTACCG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* * * *
71069058 AATTACAAACAGGGGCACATATGTGCAACCAGGGGTACCA
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* * * * *
71069098 AAGTACAAATAGGGGCACGTATGTACAATAAGGGGCACTG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* * *
71069138 AAGTACAAACA-GGGCATGTATGTGCAATCAAGGGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* *
71069177 AAGTACAAACAGGGGCACGTATGTGCCATTAGGGGTACCG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
* ** * *
71069217 AAGTACAAATAGGGGCACGTACATGTAATTAGGGGTACC-
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
*
71069256 AGAGTACAAACAGGGGCATGTATGTGCAATCA
1 A-AGTACAAACAGGGGCACGTATGTGCAATCA
71069288 TACAATAATT
Statistics
Matches: 184, Mismatches: 43, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
39 56 0.30
40 128 0.70
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (40 bp):
AAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCG
Found at i:71069123 original size:20 final size:20
Alignment explanation
Indices: 71069098--71069237 Score: 76
Period size: 20 Copynumber: 7.0 Consensus size: 20
71069088 AGGGGTACCA
71069098 AAGTACAAATAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
*
71069118 ATGTAC-AATAAGGGGCAC-T
1 AAGTACAAAT-AGGGGCACGT
* *
71069137 GAAGTACAAACA-GGGCATGT
1 -AAGTACAAATAGGGGCACGT
* * * *
71069157 ATGTGC-AATCAAGGGTATCG-
1 AAGTACAAAT-AGGGGCA-CGT
*
71069177 AAGTACAAACAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
* * * * *
71069197 ATGTGCCATTAGGGGTACCG-
1 AAGTACAAATAGGGGCA-CGT
71069217 AAGTACAAATAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
71069237 A
1 A
71069238 CATGTAATTA
Statistics
Matches: 84, Mismatches: 25, Indels: 22
0.64 0.19 0.17
Matches are distributed among these distances:
18 2 0.02
19 18 0.21
20 57 0.68
21 7 0.08
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (20 bp):
AAGTACAAATAGGGGCACGT
Found at i:71069230 original size:119 final size:118
Alignment explanation
Indices: 71069018--71069287 Score: 339
Period size: 119 Copynumber: 2.3 Consensus size: 118
71069008 CCAGAGTTAT
* * * * *
71069018 CAAGTATAAACAGGGGCATGGAAGTGCATTC-AGAGTACCGAATTACAAACAGGGGCACATATGT
1 CAAGTACAAACAGGGGCATGTATGTGCAATCAAGAGTACCGAAGTACAAACAGGGGCACATATGT
71069082 GCAACCAGGGGTACCAAAGTACAAATAGGGGCACGT-ATGTACAATAAGGGGCAC
66 GCAACCAGGGGTACCAAAGTACAAATAGGGGCACGTAATGT--AATAAGGGGCAC
* * * *
71069136 TGAAGTACAAACA-GGGCATGTATGTGCAATCAAGGGTATCGAAGTACAAACAGGGGCACGTATG
1 -CAAGTACAAACAGGGGCATGTATGTGCAATCAAGAGTACCGAAGTACAAACAGGGGCACATATG
* ** * * *
71069200 TGCCATTAGGGGTACCGAAGTACAAATAGGGGCACGTACATGTAATTAGGGGTAC
65 TGCAACCAGGGGTACCAAAGTACAAATAGGGGCACGTA-ATGTAATAAGGGGCAC
71069255 CAGAGTACAAACAGGGGCATGTATGTGCAATCA
1 CA-AGTACAAACAGGGGCATGTATGTGCAATCA
71069288 TACAATAATT
Statistics
Matches: 130, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 16 0.12
119 91 0.70
120 19 0.15
121 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (118 bp):
CAAGTACAAACAGGGGCATGTATGTGCAATCAAGAGTACCGAAGTACAAACAGGGGCACATATGT
GCAACCAGGGGTACCAAAGTACAAATAGGGGCACGTAATGTAATAAGGGGCAC
Found at i:71070560 original size:25 final size:25
Alignment explanation
Indices: 71070526--71070584 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
71070516 AAATAATTTC
*
71070526 TAAAATTAAATATAACAATTAATAA
1 TAAATTTAAATATAACAATTAATAA
*
71070551 TAAATTTAAATATAATAATTAATAA
1 TAAATTTAAATATAACAATTAATAA
*
71070576 TAAGTTTAA
1 TAAATTTAA
71070585 CTTTTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAATTTAAATATAACAATTAATAA
Found at i:71070574 original size:12 final size:12
Alignment explanation
Indices: 71070526--71070572 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
71070516 AAATAATTTC
71070526 TAAAATTAAATA
1 TAAAATTAAATA
71070538 TAACAATT-AATAA
1 TAA-AATTAAAT-A
*
71070551 TAAATTTAAATA
1 TAAAATTAAATA
71070563 TAATAATTAA
1 TAA-AATTAA
71070573 TAATAAGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAATTAAATA
Found at i:71071303 original size:34 final size:34
Alignment explanation
Indices: 71071265--71071330 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
71071255 TAAACATAAT
71071265 TAACATACCTTAATTATATAATACTAATAGTAAC
1 TAACATACCTTAATTATATAATACTAATAGTAAC
71071299 TAACATACCTTAATTATATAATACTAATAGTA
1 TAACATACCTTAATTATATAATACTAATAGTA
71071331 TATATTATCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (34 bp):
TAACATACCTTAATTATATAATACTAATAGTAAC
Found at i:71078901 original size:200 final size:200
Alignment explanation
Indices: 71078551--71078936 Score: 549
Period size: 200 Copynumber: 1.9 Consensus size: 200
71078541 TACAAGACTA
* * * *
71078551 GTAATTGAATTTAACCAAATAGATTTAATTGCTACAATTTGAGTCAAAACTAAAATTTAAAAACC
1 GTAACTGAATTTAACCAAACAGATTTAATTGCTACAATTTAAATCAAAACTAAAATTTAAAAACC
* *
71078616 AAAAAAATATAGAAACTAAATCTACAATTTTCATAAAGTATAGGGACTTATAGCAAAATATAAGT
66 AAAAAAATATAGAAACTAAATCCACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAGT
*
71078681 ACAAGGGTTTGGCAGAATGTGTGTTTGGTTTTCTAGTCCAACTAGTTAAGAAAAATAGGCATATC
131 ACAAGGGTTTGGCAGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAAGAAAAATAGGCATATC
71078746 TACTG
196 TACTG
* * * * * *
71078751 GTAACTGAATTTTACCAAACAGATTTAATTGTTACAGTTTAAATCAAGATTAAAATTTCAAAACC
1 GTAACTGAATTTAACCAAACAGATTTAATTGCTACAATTTAAATCAAAACTAAAATTTAAAAACC
* * * * * *
71078816 TAAAAAAATATAGAAACTATATCCATAATTTTTATAAAATATAGGTACTTATAGCAGAATTTAAG
66 -AAAAAAATATAGAAACTAAATCCACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAG
** * *
71078881 TA-GGGGGTTTGGCTGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAGGAAAAAT
130 TACAAGGGTTTGGCAGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAAGAAAAAT
71078937 GAGGGTATTT
Statistics
Matches: 162, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
200 104 0.64
201 58 0.36
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (200 bp):
GTAACTGAATTTAACCAAACAGATTTAATTGCTACAATTTAAATCAAAACTAAAATTTAAAAACC
AAAAAAATATAGAAACTAAATCCACAATTTTCATAAAATATAGGGACTTATAGCAAAATATAAGT
ACAAGGGTTTGGCAGAATGTGTGTTTGGTTTCCTAGTCCAACTAGTTAAGAAAAATAGGCATATC
TACTG
Found at i:71081193 original size:9 final size:9
Alignment explanation
Indices: 71081177--71081228 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
71081167 GGTATTTTTC
71081177 GGTAATTCG
1 GGTAATTCG
*
71081186 GTTAATTCG
1 GGTAATTCG
*
71081195 GTTAATTCG
1 GGTAATTCG
71081204 GGTAATTCG
1 GGTAATTCG
71081213 GGTAATTCG
1 GGTAATTCG
71081222 GGTAATT
1 GGTAATT
71081229 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:71082080 original size:29 final size:30
Alignment explanation
Indices: 71082024--71082081 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
71082014 TTTGGTGTTT
* *
71082024 TATTTGTACTTTCATAAAATGTCTAATGTGA
1 TATTTGTACTTT-AGAAAATGTCCAATGTGA
71082055 TATTTGTACTTT-GAAAATGTCCAATGT
1 TATTTGTACTTTAGAAAATGTCCAATGT
71082082 AATACCTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
31 12 0.48
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (30 bp):
TATTTGTACTTTAGAAAATGTCCAATGTGA
Found at i:71082337 original size:20 final size:20
Alignment explanation
Indices: 71082300--71082337 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
71082290 TAAATAAAAC
*
71082300 AAAAAAAATTAAGTTAAATT
1 AAAAAAAATTAAGCTAAATT
71082320 AAAAAACAATT-AGCTAAA
1 AAAAAA-AATTAAGCTAAA
71082338 CAAATGGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (20 bp):
AAAAAAAATTAAGCTAAATT
Found at i:71082798 original size:18 final size:20
Alignment explanation
Indices: 71082766--71082849 Score: 75
Period size: 23 Copynumber: 4.0 Consensus size: 20
71082756 AAAATAAAAA
71082766 AATTTAAAAAGAATT-AAAATT
1 AATTT-AAAA-AATTCAAAATT
71082787 AATTT-AAAAATTCAAAA-T
1 AATTTAAAAAATTCAAAATT
*
71082805 ATTTATAAAAAATTCAAAATTT
1 AATT-TAAAAAATTCAAAA-TT
*
71082827 ATATTTTAAAAAATTAAAAATT
1 A-A-TTTAAAAAATTCAAAATT
71082849 A
1 A
71082850 TAAAAAATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
18 8 0.15
19 8 0.15
20 12 0.23
21 5 0.09
22 5 0.09
23 13 0.25
24 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (20 bp):
AATTTAAAAAATTCAAAATT
Found at i:71082845 original size:22 final size:24
Alignment explanation
Indices: 71082803--71082851 Score: 75
Period size: 22 Copynumber: 2.1 Consensus size: 24
71082793 AAAATTCAAA
*
71082803 ATATTTATAAAAAATTCAAAATTT
1 ATATTTATAAAAAATTCAAAAATT
71082827 ATATTT-TAAAAAATT-AAAAATT
1 ATATTTATAAAAAATTCAAAAATT
71082849 ATA
1 ATA
71082852 AAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 9 0.38
23 9 0.38
24 6 0.25
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATTTATAAAAAATTCAAAAATT
Found at i:71082854 original size:16 final size:16
Alignment explanation
Indices: 71082833--71082874 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
71082823 ATTTATATTT
71082833 TAAAAAATTAAAAATTA
1 TAAAAAA-TAAAAATTA
*
71082850 TAAAAAATAAAAATTC
1 TAAAAAATAAAAATTA
*
71082866 TAAAGAATA
1 TAAAAAATA
71082875 TATAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
TAAAAAATAAAAATTA
Found at i:71085838 original size:21 final size:23
Alignment explanation
Indices: 71085807--71085849 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
71085797 CTCAAAATTT
71085807 ATAAATAACTTT-AAAAAAATAC
1 ATAAATAACTTTCAAAAAAATAC
71085829 ATAAAT-ACTTTCAAAAAAATA
1 ATAAATAACTTTCAAAAAAATA
71085850 TGAATAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (23 bp):
ATAAATAACTTTCAAAAAAATAC
Found at i:71086141 original size:23 final size:22
Alignment explanation
Indices: 71086107--71086151 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
71086097 GGATTTTTAT
71086107 TTTATTTAATAT-TAATTTTAAA
1 TTTATTTAATATAT-ATTTTAAA
*
71086129 TTTATTATTATATATATTTTAAA
1 TTTATT-TAATATATATTTTAAA
71086152 CAGTTATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 13 0.65
24 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATTTAATATATATTTTAAA
Found at i:71087217 original size:2 final size:2
Alignment explanation
Indices: 71087210--71087237 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71087200 AAAATTTAAT
71087210 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
71087238 GGGGGGTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:71087368 original size:14 final size:14
Alignment explanation
Indices: 71087349--71087375 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71087339 TGCCAGATGA
71087349 CTTTTATTAAATAT
1 CTTTTATTAAATAT
71087363 CTTTTATTAAATA
1 CTTTTATTAAATA
71087376 ATTCTTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
CTTTTATTAAATAT
Found at i:71087495 original size:16 final size:17
Alignment explanation
Indices: 71087463--71087495 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
71087453 GAATTGCAAT
*
71087463 GGGCCATATGAAGTGAA
1 GGGCCATATGAAATGAA
71087480 GGGCCA-ATGAAATGAA
1 GGGCCATATGAAATGAA
71087496 CTCTCACCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.12, G:0.33, T:0.15
Consensus pattern (17 bp):
GGGCCATATGAAATGAA
Found at i:71092334 original size:182 final size:181
Alignment explanation
Indices: 71092104--71092481 Score: 551
Period size: 182 Copynumber: 2.1 Consensus size: 181
71092094 TGATCTGGAT
* * * * *
71092104 CCTTAATGACCCGACTTGAAAAAATTCAAATTTGAATATTTGAATCAATCGATTCAAACTCAAAT
1 CCTTAATGACCCAATTTGAAAAAATCCAAATTTGAATATTCGAATCAATCAATTCAAACTCAAAT
* *
71092169 TCAATCTCATCCAATTTGATCATTAAAAAACTCAAACCACCTAAC-CTTAAACCCAAATTGAATC
66 TCAACCCCATCCAATTTGATCATTAAAAAACTCAAACCACCTAACTC-TAAACCCAAATTGAATC
71092233 AAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAACTGATTCGAAC
130 AAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAACTGATTCGAAC
* * *
71092285 CTCTTAATGACCCAATTTGAAAATATCCGAATTTGAATATTCGAATCAATCAATTCAAACTCTAA
1 C-CTTAATGACCCAATTTGAAAAAATCCAAATTTGAATATTCGAATCAATCAATTCAAACTCAAA
* * * *
71092350 TTCAACCCCATCCTATTTGATCATTAAAAATCTCAAACCACCTGACTCTAAACCCAAATTGAATT
65 TTCAACCCCATCCAATTTGATCATTAAAAAACTCAAACCACCTAACTCTAAACCCAAATTGAATC
* ** *
71092415 GAATTTGAATTAACTTGAAGGTGAAGTGATTAAAACTTGAACTGATTCGAAC
130 AAATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAACTGATTCGAAC
* *
71092467 CATTAAAGACCCAAT
1 CCTTAATGACCCAAT
71092482 CCAAAAAAAC
Statistics
Matches: 175, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
181 13 0.07
182 161 0.92
183 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (181 bp):
CCTTAATGACCCAATTTGAAAAAATCCAAATTTGAATATTCGAATCAATCAATTCAAACTCAAAT
TCAACCCCATCCAATTTGATCATTAAAAAACTCAAACCACCTAACTCTAAACCCAAATTGAATCA
AATTTGAATTAACTTGAACATAAAGTGATTAAAACTTGAACTGATTCGAAC
Found at i:71098919 original size:22 final size:22
Alignment explanation
Indices: 71098891--71098935 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
71098881 ATTTATGTTA
71098891 AAATAATAAATTTATTAATAAT
1 AAATAATAAATTTATTAATAAT
71098913 AAATAATAAATTTATTAATAAT
1 AAATAATAAATTTATTAATAAT
71098935 A
1 A
71098936 TTTGTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATAATAAATTTATTAATAAT
Found at i:71098944 original size:19 final size:19
Alignment explanation
Indices: 71098922--71098961 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
71098912 TAAATAATAA
71098922 ATTTATTAATAATATTTGT
1 ATTTATTAATAATATTTGT
** *
71098941 ATTTATTTTTATTATTTGT
1 ATTTATTAATAATATTTGT
71098960 AT
1 AT
71098962 ATCTACTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
ATTTATTAATAATATTTGT
Found at i:71098944 original size:60 final size:59
Alignment explanation
Indices: 71098831--71098946 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 59
71098821 TTAAATATGC
* * *
71098831 AAAATAAATAATTATATTTAATATTAAATAATAAAATATTTTATATTTTTATTTATGTT
1 AAAATAAATAATTATATTTAATAATAAATAATAAAATATTTAATATTTGTATTTATGTT
*
71098890 AAAAT-AATAAATT-TA-TTAATAATAAATAATAAATTTATTAATAATATTTGTATTTAT
1 AAAATAAAT-AATTATATTTAATAATAAATAATAAA-ATATT--TAATATTTGTATTTAT
71098947 TTTTATTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
57 17 0.35
58 9 0.18
59 9 0.18
60 14 0.29
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (59 bp):
AAAATAAATAATTATATTTAATAATAAATAATAAAATATTTAATATTTGTATTTATGTT
Found at i:71099688 original size:35 final size:35
Alignment explanation
Indices: 71099648--71099716 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
71099638 TTCAATTTTG
*
71099648 GAAAGTGATAATTTATCATGCAATAGTTACATTTA
1 GAAAGTGATAATTTATCATGCAATAGATACATTTA
* *
71099683 GAAAGTGATAATTTATCATTCAATGGATACATTT
1 GAAAGTGATAATTTATCATGCAATAGATACATTT
71099717 TCATGGGACA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
GAAAGTGATAATTTATCATGCAATAGATACATTTA
Found at i:71106034 original size:17 final size:17
Alignment explanation
Indices: 71106012--71106046 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
71106002 TACAGCAACG
71106012 CTCAAACTTGATCGCCA
1 CTCAAACTTGATCGCCA
71106029 CTCAAACTTGATCGCCA
1 CTCAAACTTGATCGCCA
71106046 C
1 C
71106047 CAAGTCGCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.37, G:0.11, T:0.23
Consensus pattern (17 bp):
CTCAAACTTGATCGCCA
Found at i:71116856 original size:28 final size:28
Alignment explanation
Indices: 71116793--71116943 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
71116783 ATATTAAGTC
*
71116793 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
71116820 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
71116848 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71116876 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
71116904 AGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
71116933 CGCACACTTAG
1 CGCACACTTAG
71116944 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 22 0.20
28 74 0.67
29 15 0.14
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71125213 original size:29 final size:29
Alignment explanation
Indices: 71125155--71125311 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
71125145 ATAGTAAGTC
*
71125155 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
71125183 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
71125212 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
71125241 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
71125269 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
71125298 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71125312 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:71125262 original size:57 final size:58
Alignment explanation
Indices: 71125155--71125311 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
71125145 ATAGTAAGTC
*
71125155 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
71125212 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
71125269 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
71125312 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:71128656 original size:92 final size:92
Alignment explanation
Indices: 71128496--71128723 Score: 278
Period size: 92 Copynumber: 2.5 Consensus size: 92
71128486 GCTTTCTGAA
* * * ** *
71128496 ATGAAATGTGTAAGACCATGGTTGAAAGATACCA-AGGCAACATGATGTGAAATGTGTAAGACCG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATA-GCAACATGACGGGAAATGAATAAGACCA
* * *
71128560 TGGTTGAAAGATACCATGGCAACATGAT
65 TGGTTGAAAGATACCATAGAAACATGAC
*
71128588 ATGAAGTGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGGGAAATGAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGGGAAATGAATAAGACCAT
71128653 GGTTGAAAGATACCATAGAAACATGAC
66 GGTTGAAAGATACCATAGAAACATGAC
* * * * * * * *
71128680 AGGAAATGAGTAAAACAATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATAGCAACATG
71128724 TCAAAGATAA
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
92 115 0.99
93 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (92 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGGGAAATGAATAAGACCAT
GGTTGAAAGATACCATAGAAACATGAC
Found at i:71128676 original size:46 final size:46
Alignment explanation
Indices: 71128498--71128708 Score: 246
Period size: 46 Copynumber: 4.6 Consensus size: 46
71128488 TTTCTGAAAT
* *
71128498 GAAATGTGTAAGACCATGGTTGAAAGATACCA-AGGCAACATGA-TG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATA-GCAACATGACAG
* * * * *
71128543 TGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAACATGATAT
1 -GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
* * * *
71128590 GAAGTGTGTAAGACCATGGTTGAAAGATACTATAGCAACATGACGG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
* *
71128636 GAAATGAATAAGACCATGGTTGAAAGATACCATAGAAACATGACAG
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
* * *
71128682 GAAATGAGTAAAACAATAGTTGAAAGA
1 GAAATGAGTAAGACCATGGTTGAAAGA
71128709 CACTATGGCA
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
46 142 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (46 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
Found at i:71131042 original size:13 final size:14
Alignment explanation
Indices: 71131008--71131044 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
71130998 TCTGAGAGAC
*
71131008 AAATGTGAAATATT
1 AAATGTGAAATATA
71131022 AAAT-TGAAA-ATA
1 AAATGTGAAATATA
71131034 AAATGTGAAAT
1 AAATGTGAAAT
71131045 GAAAGGATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 6 0.30
13 10 0.50
14 4 0.20
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.30
Consensus pattern (14 bp):
AAATGTGAAATATA
Found at i:71131269 original size:21 final size:21
Alignment explanation
Indices: 71131245--71131313 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
71131235 AGTAAAATAA
71131245 GGAATTAAAGTGAAGAAAAGG
1 GGAATTAAAGTGAAGAAAAGG
** *
71131266 GGAATTTTGAGTTTAA-AATAA--
1 GGAA-TTAAAG-TGAAGAA-AAGG
*
71131287 GGAAATAAAGTGAAGAAAAGG
1 GGAATTAAAGTGAAGAAAAGG
71131308 GGAATT
1 GGAATT
71131314 TTGAGTTATG
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 5 0.15
20 5 0.15
21 13 0.38
22 6 0.18
23 5 0.15
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (21 bp):
GGAATTAAAGTGAAGAAAAGG
Found at i:71131296 original size:42 final size:42
Alignment explanation
Indices: 71131237--71131320 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
71131227 ATTGATATAG
*
71131237 TAAAATAAGGAATTAAAGTGAAGAAAAGGGGAATTTTGAGTT
1 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTGAGTT
71131279 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTGAGTT
1 TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTGAGTT
71131321 ATGTCAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.25
Consensus pattern (42 bp):
TAAAATAAGGAAATAAAGTGAAGAAAAGGGGAATTTTGAGTT
Found at i:71138638 original size:46 final size:46
Alignment explanation
Indices: 71138586--71138844 Score: 349
Period size: 46 Copynumber: 5.6 Consensus size: 46
71138576 GCTTTCTAAA
* *
71138586 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
71138632 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
71138678 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGGC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
71138724 ATGAAATGAACAACACCATGGTTGAAAGATACCATGGCAGCATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
71138770 GA-GAAATGAATAAGACCATGGTTGAAAGATATCATTGCAACATGAC
1 -ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
71138816 AGGAAATGAGTAAGACCATAGTTGAAAGA
1 ATGAAATGAGTAAGACCATGGTTGAAAGA
71138845 CACTATAGCA
Statistics
Matches: 192, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 190 0.99
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:71138657 original size:21 final size:21
Alignment explanation
Indices: 71138633--71138704 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
71138623 CAACATGATA
71138633 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * * *
71138654 TGAAA-GATATCATGGCAACATGAT
1 TGAAATG-TGT-A-AG-ACCATGGT
71138678 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
71138700 TGAAA
1 TGAAA
71138705 GATACCATGG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 12 0.32
22 7 0.19
23 2 0.05
24 7 0.19
25 7 0.19
26 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:71141972 original size:47 final size:47
Alignment explanation
Indices: 71141909--71142225 Score: 580
Period size: 47 Copynumber: 6.7 Consensus size: 47
71141899 ATGATAGTAT
71141909 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
71141956 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
71142003 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
71142050 GGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
71142097 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
71142144 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
71142193 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
71142226 CCCGAAGGGC
Statistics
Matches: 262, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 217 0.83
49 41 0.16
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:71142399 original size:37 final size:37
Alignment explanation
Indices: 71142343--71142421 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
71142333 CCGAGCTCTA
* * *
71142343 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
71142380 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
71142417 AAGAC
1 AAGAC
71142422 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:71144439 original size:57 final size:58
Alignment explanation
Indices: 71144366--71144484 Score: 186
Period size: 57 Copynumber: 2.1 Consensus size: 58
71144356 TTAATGTTAT
* * * *
71144366 TTTAATATATTAAATATTTAATTTAATTTAATATTTATCTTGAT-AGTATTCTATTAA
1 TTTAATAGATTAAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
*
71144423 TTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
1 TTTAATAGATTAAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
71144481 TTTA
1 TTTA
71144485 GAGTAAACTA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 40 0.71
58 16 0.29
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.53
Consensus pattern (58 bp):
TTTAATAGATTAAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
Found at i:71147104 original size:46 final size:45
Alignment explanation
Indices: 71147029--71147203 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
71147019 TGTAACCCGC
* *
71147029 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * *
71147075 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** * ** *
71147121 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
71147168 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
71147204 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 33 0.32
48 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:71147195 original size:93 final size:93
Alignment explanation
Indices: 71147036--71147208 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
71147026 CGCCCATAAG
** * *
71147036 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71147101 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
71147129 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
71147194 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
71147209 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:71147223 original size:46 final size:46
Alignment explanation
Indices: 71147080--71147223 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 46
71147070 CGCATCCATG
* * *
71147080 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATC-CT
* * *
71147129 --CGAACTCGGACTCAACTCAACGAGTTC-GA---ACATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC-T
*
71147172 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
71147219 AGTGA
1 AGTGA
71147224 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 5 0.07
46 33 0.44
47 28 0.37
48 4 0.05
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
Found at i:71149630 original size:15 final size:15
Alignment explanation
Indices: 71149606--71149683 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
71149596 AGGAAACCGA
71149606 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
71149621 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
71149635 AATAAAGAATTCC-AG
1 -ATAAAGAAATCCAAG
* *
71149650 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71149666 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71149681 ATA
1 ATA
71149684 TGATACTATG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
14 2 0.04
15 49 0.94
16 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Done.