Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 215 of 320
Found at i:71887439 original size:29 final size:29
Alignment explanation
Indices: 71887395--71887452 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
71887385 ATCCTTTGAC
* *
71887395 AATTAGGGATCGTTGTTTTCCGGCTAACT
1 AATTAGAGATCATTGTTTTCCGGCTAACT
71887424 AATTAGAGATCATTGTTTTCCGGCTAACT
1 AATTAGAGATCATTGTTTTCCGGCTAACT
71887453 TGATGTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (29 bp):
AATTAGAGATCATTGTTTTCCGGCTAACT
Found at i:71887684 original size:42 final size:42
Alignment explanation
Indices: 71887637--71887721 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
71887627 TGACTACTGA
71887637 GAAATATTTGAGAAAAGGATATGAAGCTTACCTAGCTTTGGT
1 GAAATATTTGAGAAAAGGATATGAAGCTTACCTAGCTTTGGT
71887679 GAAATATTTGAGAAAAGGATATGAAGCTTACCTAGCTTTGGT
1 GAAATATTTGAGAAAAGGATATGAAGCTTACCTAGCTTTGGT
71887721 G
1 G
71887722 CTGAATACTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (42 bp):
GAAATATTTGAGAAAAGGATATGAAGCTTACCTAGCTTTGGT
Found at i:71891938 original size:47 final size:44
Alignment explanation
Indices: 71891863--71892076 Score: 130
Period size: 46 Copynumber: 4.7 Consensus size: 44
71891853 TCACTTGTGT
* * **
71891863 GAGCTAGTGTAAAACATGTCTGAAACATGCATCAGCCACATT-ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGATGA
*
71891909 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT--GATGA
* * * * *
71891957 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGATGA
* * * * *
71892000 CGTAAGCCAATGCAAGACATGTCTGGAACATGCATCGGC-TACGA-GA
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGACAT-TGATGA
* *
71892046 TGTGTCAGTGTAAGACCATGTCTGGGACATG
1 -GAGCCAGTGTAAGA-CATGTCTGGGACATG
71892077 GTATCAGCAC
Statistics
Matches: 136, Mismatches: 22, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.01
44 12 0.09
45 20 0.15
46 56 0.41
47 25 0.18
48 21 0.15
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGATGA
Found at i:71892019 original size:46 final size:44
Alignment explanation
Indices: 71891967--71892076 Score: 132
Period size: 46 Copynumber: 2.4 Consensus size: 44
71891957 GTGCTAGTGT
71891967 AAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCCAATGC
1 AAGACATGTCTGGGACATGCATCGG-CTACGAGACGT--GCCAATGC
* * * * *
71892013 AAGACATGTCTGGAACATGCATCGGCTACGAGATGTGTCAGTGT
1 AAGACATGTCTGGGACATGCATCGGCTACGAGACGTGCCAATGC
71892057 AAGACCATGTCTGGGACATG
1 AAGA-CATGTCTGGGACATG
71892077 GTATCAGCAC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 9 0.16
45 16 0.29
46 31 0.55
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (44 bp):
AAGACATGTCTGGGACATGCATCGGCTACGAGACGTGCCAATGC
Found at i:71895613 original size:35 final size:35
Alignment explanation
Indices: 71895567--71895718 Score: 162
Period size: 35 Copynumber: 4.3 Consensus size: 35
71895557 TACTCTCTGC
71895567 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* *
71895602 TTGGTGTGTTTC-GATTGGACTAGCTCTTATTAGCA
1 TTGGTGTGTTTCGGA-GGGACTAGCTCTTATGAGCA
* ** *
71895637 TTGTTGTGTTTCGGTTGGAGTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* * * * * *
71895672 TTGCTGTGTTTTGGAGGGAATGGCTCGTGTGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
*
71895707 TCTAGTGTGTTT
1 T-TGGTGTGTTT
71895719 TGGTTGGACT
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
34 2 0.02
35 87 0.89
36 9 0.09
ACGTcount: A:0.15, C:0.12, G:0.32, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
Found at i:71899450 original size:43 final size:42
Alignment explanation
Indices: 71899384--71899504 Score: 113
Period size: 43 Copynumber: 2.8 Consensus size: 42
71899374 AGCTCGTACA
* * * *
71899384 ATGCCAACGTCTCAGAC-GTGGTCTTACATGTAATCA-AGTATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCACA-TA-CG
*
71899427 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCACATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCACATACG
* *
71899469 ATGCCAATGTCCCTGACATGGT-TTGACACGTAAATC
1 ATGCCAATGTCCCAGACAGGGTCTT-ACACG-AAATC
71899505 TCAAATCATT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.03
42 26 0.39
43 36 0.55
44 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCACATACG
Found at i:71900615 original size:18 final size:18
Alignment explanation
Indices: 71900571--71900606 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71900561 AGCAACTTTT
71900571 ACATTTTATGCGATTAGG
1 ACATTTTATGCGATTAGG
71900589 ACATTTTATGCGATTAGG
1 ACATTTTATGCGATTAGG
71900607 TTCTTTTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (18 bp):
ACATTTTATGCGATTAGG
Found at i:71905359 original size:49 final size:47
Alignment explanation
Indices: 71905306--71905397 Score: 130
Period size: 49 Copynumber: 1.9 Consensus size: 47
71905296 GCGTAAGACC
* *
71905306 TGTCTGGGATATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGATT
1 TGTCTGGGACATGGCATCGACACAAAT-A-TGAGAGCCAGTGTAAGATT
**
71905355 TGTCTGGGACATGGCATCGACTTAAATATGAGAGCCAGTGTAA
1 TGTCTGGGACATGGCATCGACACAAATATGAGAGCCAGTGTAA
71905398 CACCATGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 15 0.38
48 1 0.03
49 23 0.59
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.25
Consensus pattern (47 bp):
TGTCTGGGACATGGCATCGACACAAATATGAGAGCCAGTGTAAGATT
Found at i:71909208 original size:50 final size:49
Alignment explanation
Indices: 71909029--71909265 Score: 278
Period size: 48 Copynumber: 4.8 Consensus size: 49
71909019 TAGCCAAACC
* * * * **
71909029 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCAAT
*
71909078 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-TAACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCAAT
* *
71909126 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACC-AAT
* *** * *
71909176 CATCTAATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGT-AAC-CAAT
* * *
71909227 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
71909266 TGCGACCTCA
Statistics
Matches: 162, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
48 46 0.28
49 40 0.25
50 39 0.24
51 36 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCAAT
Found at i:71909213 original size:98 final size:101
Alignment explanation
Indices: 71909029--71909265 Score: 284
Period size: 97 Copynumber: 2.4 Consensus size: 101
71909019 TAGCCAAACC
* * * * ** ** *** *
71909029 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCTAACCATCTAATACACATA
71909093 GTAGCCTGCACTTAGTACTACACAC-T-AAC-CAAT
66 GTAGCCTGCACTTAGTACTACACACGTGAACACAAT
*
71909126 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACCTAACCATCTAATACACATA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCTAACCATCTAATACACATA
* *
71909191 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
66 GTAGCCTGCACTTAGTACTACACACGTGAACACAAT
* * *
71909227 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
71909266 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 19, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
97 39 0.33
98 37 0.32
99 1 0.01
100 2 0.02
101 38 0.32
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (101 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTAACCTAACCATCTAATACACATA
GTAGCCTGCACTTAGTACTACACACGTGAACACAAT
Found at i:71911546 original size:48 final size:48
Alignment explanation
Indices: 71911488--71911591 Score: 192
Period size: 48 Copynumber: 2.2 Consensus size: 48
71911478 GCATTCATTT
71911488 CATAA-TCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
1 CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
*
71911535 CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTG
1 CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
71911583 CATAAGTCA
1 CATAAGTCA
71911592 ACGAGACCTA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 5 0.09
48 50 0.91
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (48 bp):
CATAAGTCATCAAAGCATCATAGTCATACATCATTACAGAGTCCCTTA
Found at i:71911568 original size:24 final size:23
Alignment explanation
Indices: 71911487--71911568 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 23
71911477 AGCATTCATT
71911487 TCATAATCATCAAAGCATCATAG
1 TCATAATCATCAAAGCATCATAG
* * *
71911510 TCATACATCATTACAG-AGTCCCT--
1 TCATA-ATCATCAAAGCA-T-CATAG
71911533 TACATAAGTCATCAAAGCATCATAG
1 T-CATAA-TCATCAAAGCATCATAG
71911558 TCATACATCAT
1 TCATA-ATCAT
71911569 TACAGAGTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 17
0.66 0.09 0.25
Matches are distributed among these distances:
23 10 0.23
24 29 0.66
25 5 0.11
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (23 bp):
TCATAATCATCAAAGCATCATAG
Found at i:71911586 original size:24 final size:24
Alignment explanation
Indices: 71911511--71911586 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
71911501 GCATCATAGT
*
71911511 CATACATCATTACAGAGTCCCTTA
1 CATACATCATTACAGAGTCCCTTG
* * * *
71911535 CATA-AGTCATCAAAGCA-T-CATAG
1 CATACA-TCATTACAG-AGTCCCTTG
71911558 TCATACATCATTACAGAGTCCCTTG
1 -CATACATCATTACAGAGTCCCTTG
71911583 CATA
1 CATA
71911587 AGTCAACGAG
Statistics
Matches: 37, Mismatches: 9, Indels: 12
0.64 0.16 0.21
Matches are distributed among these distances:
23 4 0.11
24 28 0.76
25 5 0.14
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.28
Consensus pattern (24 bp):
CATACATCATTACAGAGTCCCTTG
Found at i:71912191 original size:10 final size:10
Alignment explanation
Indices: 71912176--71912222 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
71912166 GCTATTAATC
71912176 CATACCAAAA
1 CATACCAAAA
71912186 CATACCAAAA
1 CATACCAAAA
*
71912196 CATAAGCCAAAGT
1 CAT-A-CCAAA-A
71912209 CATACCAAAA
1 CATACCAAAA
71912219 CATA
1 CATA
71912223 AAATTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 17 0.53
11 6 0.19
12 6 0.19
13 3 0.09
ACGTcount: A:0.55, C:0.28, G:0.04, T:0.13
Consensus pattern (10 bp):
CATACCAAAA
Found at i:71913755 original size:15 final size:15
Alignment explanation
Indices: 71913735--71913778 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
71913725 GTACTAACAC
71913735 TGGAGCTTCAATTAA
1 TGGAGCTTCAATTAA
*
71913750 TGGAGCTTCAGTTAA
1 TGGAGCTTCAATTAA
*
71913765 TAGAGCTTTCAATT
1 TGGAGC-TTCAATT
71913779 GATCAAAGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 19 0.76
16 6 0.24
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (15 bp):
TGGAGCTTCAATTAA
Found at i:71915587 original size:33 final size:32
Alignment explanation
Indices: 71915550--71915637 Score: 106
Period size: 32 Copynumber: 2.7 Consensus size: 32
71915540 CATGTGGTTC
* *
71915550 TGTGAAATGATAACAAATATCAGCTTTTCATTT
1 TGTGAAATGATAACAAATATCAAC-TTTAATTT
* *
71915583 TGTGAATTTATAACAAAT-TACAACTTTAATTT
1 TGTGAAATGATAACAAATAT-CAACTTTAATTT
*
71915615 TGTAAAATGATAACAAATATCAA
1 TGTGAAATGATAACAAATATCAA
71915638 TTAGTATTCT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
32 26 0.57
33 20 0.43
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (32 bp):
TGTGAAATGATAACAAATATCAACTTTAATTT
Found at i:71928348 original size:6 final size:6
Alignment explanation
Indices: 71928337--71928361 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
71928327 TAAAATAAAT
71928337 AGAAAG AGAAAG AGAAAG AGAAAG A
1 AGAAAG AGAAAG AGAAAG AGAAAG A
71928362 AAGATAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AGAAAG
Found at i:71928778 original size:27 final size:28
Alignment explanation
Indices: 71928748--71928800 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
71928738 TATTTATCTC
*
71928748 AAATTATA-TTTTAGTCACTTATGTTTA
1 AAATTATACATTTAGTCACTTATGTTTA
*
71928775 AAATTTTACATTTAGTCACTTATGTT
1 AAATTATACATTTAGTCACTTATGTT
71928801 ATTATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.32, C:0.09, G:0.08, T:0.51
Consensus pattern (28 bp):
AAATTATACATTTAGTCACTTATGTTTA
Found at i:71931902 original size:15 final size:15
Alignment explanation
Indices: 71931879--71931908 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71931869 ATGGTTTAAA
71931879 ATTACTTATAGTTTT
1 ATTACTTATAGTTTT
*
71931894 ATTATTTATAGTTTT
1 ATTACTTATAGTTTT
71931909 TTTCTAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (15 bp):
ATTACTTATAGTTTT
Found at i:71941879 original size:16 final size:16
Alignment explanation
Indices: 71941858--71941889 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
71941848 TAGATTAAGC
71941858 TTTAGTTTTGTTCGTA
1 TTTAGTTTTGTTCGTA
71941874 TTTAGTTTTGTTCGTA
1 TTTAGTTTTGTTCGTA
71941890 CTATTGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.19, T:0.62
Consensus pattern (16 bp):
TTTAGTTTTGTTCGTA
Found at i:71948058 original size:40 final size:40
Alignment explanation
Indices: 71948014--71948201 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
71948004 GCAAACCCAT
* * *
71948014 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
71948054 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
71948094 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
71948134 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
71948174 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
71948202 TCCAATGCTC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:71953951 original size:33 final size:34
Alignment explanation
Indices: 71953914--71954011 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 34
71953904 ATGATTATAT
71953914 TTAAATATTTAAAATATAATTTATATATT-CTAA
1 TTAAATATTTAAAATATAATTTATATATTACTAA
* * *
71953947 TTAAAT-TTTATAA-ATAATTAATATTTATTACTTA
1 TTAAATATTTAAAATATAATT--TATATATTACTAA
* *
71953981 -GAAATATTTAAAATTTATATTTCATATATTA
1 TTAAATATTTAAAATATA-ATTT-ATATATTA
71954012 AAATATTAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 10 0.20
35 9 0.18
36 3 0.06
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (34 bp):
TTAAATATTTAAAATATAATTTATATATTACTAA
Found at i:71954001 original size:30 final size:30
Alignment explanation
Indices: 71953962--71954018 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
71953952 TTTTATAAAT
71953962 AATTAATATTT-AT-TACTTAGAAATATTTAA
1 AATTAATATTTCATATA-TTA-AAATATTTAA
*
71953992 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
71954019 AACAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 17 0.71
31 5 0.21
32 2 0.08
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:71958082 original size:29 final size:29
Alignment explanation
Indices: 71958050--71958109 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
71958040 CTGCAAGAAG
*
71958050 AATAAAGCTTAGTTGATTTTAGAATTTAT
1 AATAAAGCTTAGTTGATTTCAGAATTTAT
71958079 AATAAAGCTTAGTTGATTTCAGAATTTAT
1 AATAAAGCTTAGTTGATTTCAGAATTTAT
71958108 AA
1 AA
71958110 ACATTTATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.13, T:0.42
Consensus pattern (29 bp):
AATAAAGCTTAGTTGATTTCAGAATTTAT
Found at i:71958438 original size:21 final size:21
Alignment explanation
Indices: 71958412--71958451 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
71958402 AACAAGACCA
71958412 CTGATGTGGCAAGTTAACTAG
1 CTGATGTGGCAAGTTAACTAG
*
71958433 CTGATGTGGCTAGTTAACT
1 CTGATGTGGCAAGTTAACT
71958452 TGCCACTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAG
Found at i:71958660 original size:3 final size:3
Alignment explanation
Indices: 71958652--71958676 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
71958642 ATATCTTTGC
71958652 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
71958677 GGCTCTCTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:71960349 original size:44 final size:43
Alignment explanation
Indices: 71960198--71960361 Score: 131
Period size: 44 Copynumber: 3.8 Consensus size: 43
71960188 AGCTCGTACA
* * * *
71960198 ATGCCAACGTCCTAGACGTGGTCTTACA-TGTAATC-AAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACT-AAATCTCAA-ATCG
* * * *
71960241 ATGTCATTGTCCCAGATAG-GGTCTTACAC-AAA-ATCAAATACG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACTAAATCTCAAAT-CG
* * *
71960283 ATGCCGATATCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-TAAATCTCAAATCG
* *
71960327 ATGCCAATGTCTCAGATGTGGTCTTACACTAAATC
1 ATGCCAATGTCCCAGACGTGGTCTTACACTAAATC
71960362 ATATATCGGA
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 27 0.29
44 30 0.32
45 6 0.06
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACTAAATCTCAAATCG
Found at i:71964691 original size:1 final size:1
Alignment explanation
Indices: 71964681--71964767 Score: 57
Period size: 1 Copynumber: 87.0 Consensus size: 1
71964671 AACATGAAAC
* * * * * * * * * *
71964681 AAAAATAAAAAAATAAAAAATAAAAAATAAAAAATAAAAATAAAATAAAAATAAAAATAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
71964746 AAAATAAAAATAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAA
71964768 TAAGGGAAAG
Statistics
Matches: 60, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (1 bp):
A
Found at i:71964698 original size:6 final size:6
Alignment explanation
Indices: 71964689--71964770 Score: 130
Period size: 6 Copynumber: 13.3 Consensus size: 6
71964679 ACAAAAATAA
71964689 AAAAAT AAAAAAT AAAAAAT AAAAAAT AAAAAT -AAAAT AAAAAT AAAAAT
1 AAAAAT -AAAAAT -AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
71964739 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
71964771 GGGAAAGCAA
Statistics
Matches: 74, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.07
6 49 0.66
7 20 0.27
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:71967677 original size:20 final size:19
Alignment explanation
Indices: 71967631--71967677 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
71967621 GTAATTCATG
71967631 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
71967650 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
71967671 TTTAATT
1 TTTAATT
71967678 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:71978011 original size:48 final size:48
Alignment explanation
Indices: 71977949--71978209 Score: 495
Period size: 48 Copynumber: 5.4 Consensus size: 48
71977939 TATATATGTG
*
71977949 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
71977997 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
71978045 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
71978093 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
71978141 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
71978189 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
71978210 GTGATTCGGC
Statistics
Matches: 209, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 209 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:71978436 original size:37 final size:37
Alignment explanation
Indices: 71978386--71978521 Score: 254
Period size: 37 Copynumber: 3.7 Consensus size: 37
71978376 ATATATTCCA
71978386 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
71978423 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
71978460 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
71978497 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
71978522 GGACTATTCG
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:71982744 original size:24 final size:24
Alignment explanation
Indices: 71982717--71982765 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
71982707 TATGTGAGAA
71982717 AAGGTTGTGACACATATTTAGCAT
1 AAGGTTGTGACACATATTTAGCAT
71982741 AAGGTTGTGACACATATTTAGCAT
1 AAGGTTGTGACACATATTTAGCAT
71982765 A
1 A
71982766 TGCTTTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (24 bp):
AAGGTTGTGACACATATTTAGCAT
Found at i:71990148 original size:16 final size:17
Alignment explanation
Indices: 71990117--71990149 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
71990107 ATGTTATACG
71990117 AGCTTACTAAATTTTAT
1 AGCTTACTAAATTTTAT
*
71990134 AGCTTAC-ATATTTTAT
1 AGCTTACTAAATTTTAT
71990150 TTTCTATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (17 bp):
AGCTTACTAAATTTTAT
Found at i:71994870 original size:6 final size:6
Alignment explanation
Indices: 71994859--71994897 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
71994849 AGTAGATAAT
71994859 GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCT
1 GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCT
71994898 AATTTTAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.15, C:0.18, G:0.49, T:0.18
Consensus pattern (6 bp):
GCTGAG
Found at i:71996199 original size:23 final size:23
Alignment explanation
Indices: 71996169--71996215 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
71996159 ACTGACTTAT
71996169 ATATATTGATGTCCATGAAACCA
1 ATATATTGATGTCCATGAAACCA
71996192 ATATATTGATGTCCATGAAACCA
1 ATATATTGATGTCCATGAAACCA
71996215 A
1 A
71996216 CTAAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (23 bp):
ATATATTGATGTCCATGAAACCA
Found at i:72001523 original size:46 final size:49
Alignment explanation
Indices: 72001458--72001589 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 49
72001448 GGCGATATGA
* * * *
72001458 GAGCCAGCGTAAGAACATGTTTGGGACATGGCATCGGCCTC-G-GTAT-
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAGTATATC
* * * * *
72001504 GTGTCAGTGTAAGACCATGTCTAGGACATGGCATAGGCATCAGTATATGC
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAGTATAT-C
* *
72001554 GAGCCAGTGTAAGACCGTGTTTGGAACATGGCATCG
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
72001590 ACATTGTTAT
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
46 33 0.50
47 1 0.02
48 3 0.05
50 29 0.44
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAGTATATC
Found at i:72001569 original size:50 final size:48
Alignment explanation
Indices: 72001508--72001612 Score: 122
Period size: 50 Copynumber: 2.1 Consensus size: 48
72001498 CGGTATGTGT
*
72001508 CAGTGTAAGACCATGTCTAGG-ACATGGCATAGGCATCAGTATATGCGAGC
1 CAGTGTAAGACCATGT-TAGGAACATGGCATAGACAT-AGT-TATGCGAGC
* * * * *
72001558 CAGTGTAAGACCGTGTTTGGAACATGGCATCGACATTGTTATGTGAGC
1 CAGTGTAAGACCATGTTAGGAACATGGCATAGACATAGTTATGCGAGC
72001606 CAGTGTA
1 CAGTGTA
72001613 GACATGGCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 15 0.31
49 5 0.10
50 28 0.58
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
CAGTGTAAGACCATGTTAGGAACATGGCATAGACATAGTTATGCGAGC
Found at i:72001752 original size:50 final size:48
Alignment explanation
Indices: 72001638--72001770 Score: 167
Period size: 48 Copynumber: 2.7 Consensus size: 48
72001628 TTAATATGCA
* * * *
72001638 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCTGTATTGTTATATG
1 AGCCAGTGTAAGACCATGTATGGAACATGGCATCGGTACTGTTATAAG
* * *
72001686 TGTCAGTGTAAGACCATGTATGGGACATGGCATCGGTACTGATGTATAAG
1 AGCCAGTGTAAGACCATGTATGGAACATGGCATCGGTACTG-T-TATAAG
* *
72001736 AGCCAGTGTACGACCATGTCTGGAACATGGCATCG
1 AGCCAGTGTAAGACCATGTATGGAACATGGCATCG
72001771 ATATTTTACC
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 35 0.49
49 1 0.01
50 35 0.49
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTATGGAACATGGCATCGGTACTGTTATAAG
Found at i:72004267 original size:12 final size:13
Alignment explanation
Indices: 72004243--72004276 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
72004233 CCATATATAT
*
72004243 ATATCACAAACAC
1 ATATCATAAACAC
72004256 ATAT-ATAAACAC
1 ATATCATAAACAC
72004268 ATATCATAA
1 ATATCATAA
72004277 GCCAAATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (13 bp):
ATATCATAAACAC
Found at i:72009212 original size:47 final size:46
Alignment explanation
Indices: 72009012--72009331 Score: 240
Period size: 47 Copynumber: 6.8 Consensus size: 46
72009002 GGGATAAGTT
* * *
72009012 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTA-TCCTCATCGGG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCGAG
* * * * * *
72009061 GCCGATGCCATGTCCCAAACATGGTCTTATACTAGCTCTCGTATATACG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTC--ATCT-CGAG
* ** * * * *
72009111 GCTGATGCATGTCCTGGACATGTCTTACACTAGTA--CAACTCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-GAG
**
72009155 GCCGATGCATGTCCCAGACACATCTTACACTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAG
** * *
72009202 GCCGATGCATGTCTTAGACATGTCTTACACTGGCACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
* *
72009248 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAG
72009296 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
72009332 ACAAGAAGTC
Statistics
Matches: 218, Mismatches: 39, Indels: 31
0.76 0.14 0.11
Matches are distributed among these distances:
43 1 0.00
44 29 0.13
45 1 0.00
46 31 0.14
47 63 0.29
48 37 0.17
49 46 0.21
50 7 0.03
51 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
Found at i:72009305 original size:94 final size:93
Alignment explanation
Indices: 72009061--72009331 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 93
72009051 CCTCATCGGG
* * * * * *
72009061 GCCGATGCCATGTCCCAAACATGGTCTTATACTAGCTCTCGTATATACGT-GCTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTC--ATA-ATGTGGCCGATGCATGTCC
* * *
72009125 TGGACATGTCTTACACTAGTA-CAACTCTTA
63 TAGACATGTCTTACACTGGCACCAACTCTTA
** ** * *
72009155 GCCGATG-CATGTCCCAGACA-CATCTTACACTGGCTA-TCATCGTCGAGGCCGATGCATGTCTT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCATAAT-GTGGCCGATGCATGTCCT
*
72009217 AGACATGTCTTACACTGGCACTCATCTC-TA
64 AGACATGTCTTACACTGGCAC-CAACTCTTA
*
72009247 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCTA
72009312 GACATGTCTTACACTGGCAC
65 GACATGTCTTACACTGGCAC
72009332 ACAAGAAGTC
Statistics
Matches: 145, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
90 3 0.02
91 30 0.21
92 14 0.10
93 24 0.17
94 57 0.39
95 17 0.12
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCTAG
ACATGTCTTACACTGGCACCAACTCTTA
Found at i:72016635 original size:47 final size:46
Alignment explanation
Indices: 72016433--72016752 Score: 242
Period size: 47 Copynumber: 6.8 Consensus size: 46
72016423 GGGATAAGTT
* * *
72016433 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGTTA-TCCTCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGG-CACTCATC-TCGAG
* * * * *
72016482 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCCGTATATACG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACT-C--ATCT-CGAG
** * ** *
72016533 GTTGATGCATGTCCC-GTACATGTCTTACACTAGCACAAATCT-TA-
1 GCCGATGCATGTCCCAG-ACATGTCTTACACTGGCACTCATCTCGAG
*
72016577 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAG
* * * *
72016624 GCCGATGCATGTCCTAGACATGTCTTACA-TGACACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
* *
72016669 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAG
*
72016717 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
72016753 ACAAGAAGTC
Statistics
Matches: 219, Mismatches: 35, Indels: 37
0.75 0.12 0.13
Matches are distributed among these distances:
44 31 0.14
45 14 0.06
46 39 0.18
47 49 0.22
48 16 0.07
49 48 0.22
50 13 0.06
51 6 0.03
52 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
Found at i:72016725 original size:93 final size:91
Alignment explanation
Indices: 72016482--72016753 Score: 277
Period size: 93 Copynumber: 2.9 Consensus size: 91
72016472 CCTCATCGAG
* * * * **
72016482 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCCGTATATACGT-GTTGATGCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACT-C--ATA-ATGTGGCCGATGCATGTC
*
72016546 CCGTACATGTCTTACACTAGCACAAATCTTA
62 CAG-ACATGTCTTACACTAGCACAAATCTTA
* ** *
72016577 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTA-TCATCGTCGAGGCCGATGCATGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCATAAT-GTGGCCGATGCATGTCC-
**
72016639 AGACATGTCTTACA-T-GACACTCATCTCTA
63 AGACATGTCTTACACTAG-CACAAATCT-TA
72016668 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGT-CCA
72016733 GACATGTCTTACACTAGCACA
64 GACATGTCTTACACTAGCACA
72016754 CAAGAAGTCT
Statistics
Matches: 146, Mismatches: 18, Indels: 27
0.76 0.09 0.14
Matches are distributed among these distances:
89 1 0.01
90 11 0.08
91 26 0.18
92 9 0.06
93 54 0.37
94 37 0.25
95 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCAGA
CATGTCTTACACTAGCACAAATCTTA
Found at i:72017132 original size:30 final size:30
Alignment explanation
Indices: 72017091--72017148 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
72017081 AAATTCACAT
* *
72017091 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
72017121 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
72017149 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:72027575 original size:6 final size:6
Alignment explanation
Indices: 72027552--72027593 Score: 68
Period size: 6 Copynumber: 7.0 Consensus size: 6
72027542 GTAAAACTGG
72027552 AAAATA GAAAAT- AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
72027594 TTAACCTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:72032709 original size:20 final size:18
Alignment explanation
Indices: 72032659--72032710 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
72032649 TATCAAGATA
72032659 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
72032676 AATATT-AATATAATCACTTT
1 AATATTAAAT-TAAT-A-TTT
72032696 AATATTAAATTAATA
1 AATATTAAATTAATA
72032711 AAATCCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
19 2 0.07
20 13 0.43
21 3 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:72032751 original size:68 final size:69
Alignment explanation
Indices: 72032617--72032751 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
72032607 TGATTAAACT
* * ** *
72032617 TAATCACTTTAATATTACATTAACATAATAGTTATCAAGATAAATATTAAATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAACAAAATACCTATCAAGATAAATATTAAATTAAATTTAACATT
72032682 AATA
66 AATA
* * * * *
72032686 TAATCACTTTAATATTAAATTAATAAAAT-CCTATTAAGATAAGTATTAAATTTAATTTCACATT
1 TAATCACTTTAATATTAAATTAACAAAATACCTATCAAGATAAATATTAAATTAAATTTAACATT
72032750 AA
66 AA
72032752 ACTATTAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 30 0.54
69 26 0.46
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (69 bp):
TAATCACTTTAATATTAAATTAACAAAATACCTATCAAGATAAATATTAAATTAAATTTAACATT
AATA
Found at i:72033813 original size:52 final size:52
Alignment explanation
Indices: 72033743--72033847 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
72033733 AGAACAAACA
*
72033743 ACCTATGGCCACATTCCATATTTATCAATCCACAAAATAG-CAATGAGAATGT
1 ACCTATAGCCACATTCCATATTTATCAATCCACAAAAT-GCCAATGAGAATGT
72033795 ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
1 ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
72033847 A
1 A
72033848 TCATTAACTC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 1 0.02
52 50 0.98
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (52 bp):
ACCTATAGCCACATTCCATATTTATCAATCCACAAAATGCCAATGAGAATGT
Found at i:72040763 original size:48 final size:48
Alignment explanation
Indices: 72040692--72040787 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
72040682 GCTTCCTGAG
*
72040692 TAAAAACTCTTATGAGTTTCTTAATTAGCTTGGATAAGTGTCTTGTTA
1 TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
72040740 TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
1 TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
72040788 CATGATTACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (48 bp):
TAAAAACTCTTATGAGTTTCTTAATTAGCTCGGATAAGTGTCTTGTTA
Found at i:72048454 original size:46 final size:46
Alignment explanation
Indices: 72048279--72048454 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
72048269 TGTAACCCGC
* * * * * *
72048279 CCATAAGCGAAATCAGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72048325 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72048375 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72048418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72048455 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72055970 original size:93 final size:93
Alignment explanation
Indices: 72055856--72056026 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
72055846 GCCCATAAGC
* * *
72055856 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
72055921 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
* * *
72055949 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
72056014 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72056027 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:72056023 original size:46 final size:46
Alignment explanation
Indices: 72055848--72056023 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
72055838 TGTAACCCGC
* * * * * *
72055848 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
72055894 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
72055944 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
72055987 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72056024 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:72056042 original size:46 final size:46
Alignment explanation
Indices: 72055897--72056035 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 46
72055887 TTCGCATCCA
*
72055897 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * *
72055945 TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATC
72055990 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
72056036 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 7, Indels: 20
0.74 0.07 0.20
Matches are distributed among these distances:
44 7 0.09
45 3 0.04
46 29 0.39
47 30 0.40
48 2 0.03
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:72058804 original size:22 final size:23
Alignment explanation
Indices: 72058773--72058815 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
72058763 ACTAATCAAT
*
72058773 TCACAACATATAGCATACATTTA
1 TCACAACATAAAGCATACATTTA
*
72058796 TCAC-ACATAAAGCATTCATT
1 TCACAACATAAAGCATACATT
72058816 CTCATAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (23 bp):
TCACAACATAAAGCATACATTTA
Found at i:72059130 original size:12 final size:12
Alignment explanation
Indices: 72059113--72059141 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
72059103 CCACACACGC
72059113 CCGTGTGGTAGG
1 CCGTGTGGTAGG
72059125 CCGTGTGGTAGG
1 CCGTGTGGTAGG
72059137 CCGTG
1 CCGTG
72059142 CCAAAACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.21, G:0.48, T:0.24
Consensus pattern (12 bp):
CCGTGTGGTAGG
Found at i:72060254 original size:28 final size:28
Alignment explanation
Indices: 72060213--72060272 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
72060203 ATGCCGTTGA
* * *
72060213 ATACTGAATGTCTCGCACACTAAGTGCC
1 ATACTCAATATCTCACACACTAAGTGCC
*
72060241 ATACTCAATATCTCACACACTAAGTTCC
1 ATACTCAATATCTCACACACTAAGTGCC
72060269 ATAC
1 ATAC
72060273 ATAGTCGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.10, T:0.27
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGCC
Found at i:72060302 original size:40 final size:40
Alignment explanation
Indices: 72060256--72060391 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 40
72060246 CAATATCTCA
* * *
72060256 CACACTAAGTTCCATACATAGTCGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
* *
72060296 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
* * **
72060336 CACACTAAGTGCCATATATAGCCGAAGTTATGTCGTATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
* *
72060376 CACAGTATGTGCCATA
1 CACACTAAGTGCCATA
72060392 AATAACCAAT
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG
Found at i:72069419 original size:15 final size:15
Alignment explanation
Indices: 72069387--72069415 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72069377 ATTTTTGGTG
72069387 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
72069402 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
72069416 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:72070586 original size:43 final size:43
Alignment explanation
Indices: 72070539--72070631 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 43
72070529 TATGATTTCT
*
72070539 GATATGTGTTCTCGTATAAGACCATGTCTGGCACATTGGCATC
1 GATATGTGTTCTCGTATAAGACCATGTCTGGCACAGTGGCATC
* * * *
72070582 GATATGTGTTCTCGTGTAAGACCTTGTTTGGGACAGTGGCATC
1 GATATGTGTTCTCGTATAAGACCATGTCTGGCACAGTGGCATC
72070625 GATATGT
1 GATATGT
72070632 AATTACATGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (43 bp):
GATATGTGTTCTCGTATAAGACCATGTCTGGCACAGTGGCATC
Found at i:72070643 original size:43 final size:43
Alignment explanation
Indices: 72070555--72070653 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
72070545 TGTTCTCGTA
* * * *
72070555 TAAGACCATGTCTGGCACATTGGCATCGATATGTGTTCTCGTG
1 TAAGACCATGTCTGGCACAGTGGCATCGATATGTATTCACATG
* * *
72070598 TAAGACCTTGTTTGGGACAGTGGCATCGATATGTAATT-ACATG
1 TAAGACCATGTCTGGCACAGTGGCATCGATATGT-ATTCACATG
*
72070641 TAAGACCACGTCT
1 TAAGACCATGTCT
72070654 AGGACGTTGG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
43 43 0.96
44 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TAAGACCATGTCTGGCACAGTGGCATCGATATGTATTCACATG
Found at i:72074839 original size:54 final size:54
Alignment explanation
Indices: 72074757--72074860 Score: 199
Period size: 54 Copynumber: 1.9 Consensus size: 54
72074747 ATGATGAAAA
*
72074757 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGGTAGATAAACAACTTTGTTG
1 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTGTTG
72074811 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTT
1 TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTT
72074861 AACAAAGTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.37
Consensus pattern (54 bp):
TTTGAAATTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTGTTG
Found at i:72076988 original size:71 final size:70
Alignment explanation
Indices: 72076895--72077047 Score: 229
Period size: 71 Copynumber: 2.2 Consensus size: 70
72076885 GTTGTATTCG
* *
72076895 CACACTTAGTGCATTATTTAACTCGCAATGCAATGAGATCGT-ACACTTAGTGCTTGATCGTTTT
1 CACACTTAGTGCATTATTTAACTCGCAATGCAATGAGATC-TCACACTTAGTGCTCGATAGTTTT
72076959 AC-TCTA
65 ACTTC-A
*
72076965 CACACTTAGTGTTATTATTTAACTCGCAATGCAATGAGATCTCACACTTAGTGCTCGATAGTTTT
1 CACACTTAGTG-CATTATTTAACTCGCAATGCAATGAGATCTCACACTTAGTGCTCGATAGTTTT
72077030 ACTTCA
65 ACTTCA
*
72077036 CGCACTTAGTGC
1 CACACTTAGTGC
72077048 TCGATAGTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
70 12 0.16
71 61 0.81
72 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (70 bp):
CACACTTAGTGCATTATTTAACTCGCAATGCAATGAGATCTCACACTTAGTGCTCGATAGTTTTA
CTTCA
Found at i:72077046 original size:29 final size:29
Alignment explanation
Indices: 72077007--72077082 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
72076997 AATGAGATCT
72077007 CACACTTAGTGCTCGATAGTTTTACTTCA
1 CACACTTAGTGCTCGATAGTTTTACTTCA
* *
72077036 CGCACTTAGTGCTCGATAGTTTTACTTCG
1 CACACTTAGTGCTCGATAGTTTTACTTCA
72077065 CACACTTAGTGCTCGATA
1 CACACTTAGTGCTCGATA
72077083 ATTCACATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (29 bp):
CACACTTAGTGCTCGATAGTTTTACTTCA
Found at i:72080754 original size:21 final size:21
Alignment explanation
Indices: 72080728--72080778 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
72080718 AGGTAGCAGA
72080728 AAAATGTATAATGATTTAAAG
1 AAAATGTATAATGATTTAAAG
72080749 AAAATGTATAATGATTTAAAG
1 AAAATGTATAATGATTTAAAG
72080770 AAAATGTAT
1 AAAATGTAT
72080779 TGGTGGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (21 bp):
AAAATGTATAATGATTTAAAG
Found at i:72087212 original size:39 final size:39
Alignment explanation
Indices: 72087117--72087378 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
72087107 TTGAATGATG
*
72087117 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
72087155 ATCCGGACTAAGATCCGAAGGCATTTTTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
72087196 TCCGGGCTAAGCCCGAAGGCATTTGTGAGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
72087235 TCCGGGCTAAGCCCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72087274 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72087313 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-AT
* *
72087354 T-CGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
72087379 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 126 0.64
40 57 0.29
41 13 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:72087400 original size:79 final size:79
Alignment explanation
Indices: 72087169--72087411 Score: 248
Period size: 78 Copynumber: 3.1 Consensus size: 79
72087159 GGACTAAGAT
* * *
72087169 CCGAAGGCATTTTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGA-GAGAT-ACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTG-AACGAG-TGACT
* *
72087232 AATTCCGGGCTAAG-C
64 AAATCCGGGTTAAGTC
* * ** *
72087247 CCAAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
72087312 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
72087326 CCGAAGGCATTTGTGCGA-ATTACTATAAT-CGGGCTATGTCTCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
72087388 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
72087405 CCGAAGG
1 CCGAAGG
72087412 TACGTGATTT
Statistics
Matches: 142, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 69 0.49
79 46 0.32
80 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:72096371 original size:51 final size:51
Alignment explanation
Indices: 72096295--72096400 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
72096285 TTCGTGAGGT
*
72096295 ATGTAGCATCCAAGCTCGTTGAGAGGT-TCAAGTTCATGATGGATGTGATT-C
1 ATGTAACATCCAAGCTCGTTGAGAGGTCT-AAGTTCATGATGGATGTG-TTGC
* * * *
72096346 ATGTAACATCCGAGCTCTTTGAGAGGTCTGAGTTCATTATGGATGTGTTGC
1 ATGTAACATCCAAGCTCGTTGAGAGGTCTAAGTTCATGATGGATGTGTTGC
72096397 ATGT
1 ATGT
72096401 TATGTGGTAG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
50 2 0.04
51 45 0.94
52 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (51 bp):
ATGTAACATCCAAGCTCGTTGAGAGGTCTAAGTTCATGATGGATGTGTTGC
Found at i:72112455 original size:40 final size:40
Alignment explanation
Indices: 72112305--72112571 Score: 398
Period size: 40 Copynumber: 6.8 Consensus size: 40
72112295 CATTTGATTT
* * *
72112305 TATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAG-TGATT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
72112343 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
72112383 TATCC-GGCTAAGACCCG-AGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
72112421 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
72112461 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
72112501 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * *
72112541 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
72112572 TTGTGGTAAT
Statistics
Matches: 210, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 49 0.23
39 32 0.15
40 129 0.61
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:72116730 original size:40 final size:40
Alignment explanation
Indices: 72116663--72116975 Score: 448
Period size: 40 Copynumber: 7.8 Consensus size: 40
72116653 ATTACCACAA
* * ** *
72116663 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72116703 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
72116743 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
72116785 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72116825 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
72116865 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72116905 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
72116945 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
72116976 AAATTCAAAT
Statistics
Matches: 251, Mismatches: 19, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
39 1 0.00
40 209 0.83
41 4 0.02
42 37 0.15
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:72116918 original size:162 final size:160
Alignment explanation
Indices: 72116663--72116975 Score: 464
Period size: 162 Copynumber: 1.9 Consensus size: 160
72116653 ATTACCACAA
* * * * *
72116663 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
72116728 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAAT
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AAATC-ACTAGCACAAAT
*
72116793 GCCTGCGGGTCTTAGCCCGGATATATCAACTC
129 GCCTGCGGGACTTAGCCCGGATATATCAACTC
* * **
72116825 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATTAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
*
72116890 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
*
72116955 CTTCGGGACTTAGCCCGGATA
131 CTGCGGGACTTAGCCCGGATA
72116976 AAATTCAAAT
Statistics
Matches: 135, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
160 31 0.23
161 4 0.03
162 100 0.74
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (160 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGC
CTGCGGGACTTAGCCCGGATATATCAACTC
Found at i:72121263 original size:12 final size:12
Alignment explanation
Indices: 72121246--72121283 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
72121236 CTAAAAAATA
72121246 ATTCACATATAC
1 ATTCACATATAC
72121258 ATTCACTTATATA-
1 ATTCAC--ATATAC
72121271 ATTCACATATAC
1 ATTCACATATAC
72121283 A
1 A
72121284 AAAAAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 5 0.22
12 7 0.30
13 6 0.26
14 5 0.22
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (12 bp):
ATTCACATATAC
Found at i:72121712 original size:42 final size:43
Alignment explanation
Indices: 72121605--72121716 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 43
72121595 ATCTCGTACA
* ***
72121605 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAAAAGTGGTCTTACACAAAATCAAATATCG
** *
72121648 ATGCCATTGT-CCAGACAG-GGTCTTACACAAAATCAAATA-CG
1 ATGCCAACGTCCCA-AAAGTGGTCTTACACAAAATCAAATATCG
72121689 ATGCCAACGTCCCAAAAGTGGTCTTACA
1 ATGCCAACGTCCCAAAAGTGGTCTTACA
72121717 ACGATGCCAA
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
41 13 0.23
42 33 0.59
43 10 0.18
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAAAAGTGGTCTTACACAAAATCAAATATCG
Found at i:72121724 original size:31 final size:31
Alignment explanation
Indices: 72121686--72121747 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
72121676 AAAATCAAAT
72121686 ACGATGCCAACGTCCCAAAAGTGGTCTTACA
1 ACGATGCCAACGTCCCAAAAGTGGTCTTACA
* *
72121717 ACGATGCCAACGTCCCAGACGTGGTCTTACA
1 ACGATGCCAACGTCCCAAAAGTGGTCTTACA
72121748 CATAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (31 bp):
ACGATGCCAACGTCCCAAAAGTGGTCTTACA
Found at i:72124823 original size:753 final size:752
Alignment explanation
Indices: 72123154--72125411 Score: 3770
Period size: 753 Copynumber: 3.0 Consensus size: 752
72123144 AAAAAGATGA
* *
72123154 AATTGGAAAGTGAAAAAATAAAAGATGATAAATGATAAAAAAAATATTATCATATTATCATCTTT
1 AATTGGAAAGTGAAATAATAAAAGATGATAAATGAT-AAAAAAATATCATCATATTATCATCTTT
* * *
72123219 CACATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATGGACAAGCTTATTGTGATC
65 CCCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGATC
* *
72123284 AATTGGGTAAGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTTTGAGATCGTAATAGCTTAA
130 AA-T---TAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAA
* *
72123349 TTTCACTATCTCGATGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTA
191 TTTAACTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTA
* * *
72123414 TAGATGAATTATGAATTTTTATGGTATAAAATGATAGGTTGTTGATAGATAAACAACTTTTGTTA
256 TAGATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTA
* *
72123479 TGTGAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGACGTAAAATTCATGGAAAATT
321 AGTGAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATT
*
72123544 TCTAAATTTTTTAAAATACATGGGTTTTAAATATTACATGAAAAATTTGGTTAGGCTTGGAATAA
386 TCTAAATTTTTTGAAATACATGGGTTTTAAATATTACATGAAAAATTTGGTTAGGCTTGGAATAA
72123609 GGATTAAATTGCATGAATTTCATATTCCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTA
451 GGATTAAATTGCATGAATTTCATATTCCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTA
72123674 GGAGCAAAACAGTAAATTTT-CCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAA
516 GGAGCAAAACAGT-AATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAA
* *
72123738 ATTCATTCATATATATCCGGATAGACCAAATTCAGAGTTAGAACGAGGAAAAGAGAAAGTGTCAG
580 ATTCATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAG
* *
72123803 ATTAGTAGATTTTACGTACGCGAACATTTATCAAGGTAAGTTCGTGTAACTAAATTATGTATATT
645 ATTAGTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATT
72123868 TACATGCTTGAATTAAATGTTTACTTGATCTGTATATTTCGAT
710 TACATGCTTGAATTAAATGTTTACTTGATCTGTATATTTCGAT
*
72123911 AATTGGAAAGTGAAATAATAAATGATGATAAATGATTAAAAAAA-ATCATCATATTATCATCTTT
1 AATTGGAAAGTGAAATAATAAAAGATGATAAATGA-TAAAAAAATATCATCATATTATCATCTTT
* *
72123975 CCCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTAACC
65 CCCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGATC
*
72124040 AATTAGGTAAGTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTT
130 AATTAGGT-ATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTT
* * *
72124105 AACTATCTCAAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAATATAA
194 AACTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAG
*
72124170 ATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAAAAACTTTTGTTAAGT
259 ATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGT
* *
72124235 GAATTTTGATGAAATTGTGATTTAGGGACTAATTTTTAAAGATGTAAAATTCATGGAAAATTTCT
324 GAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTCT
*
72124300 AAATTTTTTGAAATACATGGGTTTTAAATATTACATG-AAAATTTGGTTAGGCTTGCAATAAGGA
389 AAATTTTTTGAAATACATGGGTTTTAAATATTACATGAAAAATTTGGTTAGGCTTGGAATAAGGA
* * * *
72124364 TTAAATTGCATGAATTTCATTTTCCAAGTCTAGGGATGAAATTGGAATTAATTAAAAGTTTAGGA
454 TTAAATTGCATGAATTTCATATTCCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTAGGA
72124429 GCAAAAC-GATAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATT
519 GCAAAACAG-TAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATT
* **
72124493 CATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAAAGAAAGTGTTGGATT
583 CATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGATT
72124558 AGTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTAC
648 AGTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTAC
*
72124623 ATGCTTGAATGAAATGTTTACTTGATCTGTATATTTC-AGT
713 ATGCTTGAATTAAATGTTTACTTGATCTGTATATTTCGA-T
72124663 AATTGGAAAGTGAAATAATAAAAGATGATAAATGATGAAGAAAAATATCATCATATTATCATCTT
1 AATTGGAAAGTGAAATAATAAAAGATGATAAATGAT-AA-AAAAATATCATCATATTATCATCTT
*
72124728 TCCCATAACAAAAACCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGAT
64 TCCCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGAT
* *
72124793 CAATTAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTATCTGAGATCGTAATCGCTTAATTT
129 CAATTAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTT
*
72124858 AACTATCTCGGGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAG
194 AACTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAG
*
72124923 ATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGA
259 ATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGT
* *
72124988 GAATTTTGATGAACTTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTTT
324 GAATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTCT
* * * * * *
72125053 GAATTTTGTGTAATACATGGGTTGTAAATATTATATGAAAAATTTGTTTAGGCTTGGAATAAGGA
389 AAATTTTTTGAAATACATGGGTTTTAAATATTACATGAAAAATTTGGTTAGGCTTGGAATAAGGA
* *
72125118 TTAAATTTCATGAATTTCATATTCCGAGCCTAAGGACGAAATTGGAATTAATTAAAAGTTTAGGA
454 TTAAATTGCATGAATTTCATATTCCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTAGGA
* * *
72125183 GCAAAATAGTAATTTTGCCAAATATGCGAATTGAATTGAAATGAACATGAATTGATGTGAAATTC
519 GCAAAACAGTAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATTC
* ** *
72125248 ATTCATATAGATTCGGATAGATTAAATTCGGAGTTAGAACGAGGACAAGAGAAAGTGTCAGATTA
584 ATTCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGATTA
* * * ** *
72125313 GTAGATTTTACATATATGAACATTTGTTGAGGTAAGTTCGTGTAACTAAATTATGTATATCTACA
649 GTAGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTACA
*
72125378 TGCTTGAATTTAATGTTTACTTGATCTGTATATT
714 TGCTTGAATTAAATGTTTACTTGATCTGTATATT
72125412 ACATACCGAA
Statistics
Matches: 1405, Mismatches: 86, Indels: 23
0.93 0.06 0.02
Matches are distributed among these distances:
751 9 0.01
752 342 0.24
753 547 0.39
754 383 0.27
755 2 0.00
756 81 0.06
757 40 0.03
758 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.35
Consensus pattern (752 bp):
AATTGGAAAGTGAAATAATAAAAGATGATAAATGATAAAAAAATATCATCATATTATCATCTTTC
CCATAACAAAAAGCCATGGAAACCCTAGTTTGAAATCTTGAAGATAGACAAGCTTATTTTGATCA
ATTAGGTATTCTTGTCCCATTTTTAGTAATTTTTATGTTTCTGAGATCGTAATAGCTTAATTTAA
CTATCTCGAGGATTAATTTGTAAAGATATCAAAGTACTAGGGTTTTTCCATGGATGAGTATAGAT
GAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGATAGATAAACAACTTTTGTTAAGTGA
ATTTTGATGAAATTGTGATTTAGGGACTAAATTGTAAAGATGTAAAATTCATGGAAAATTTCTAA
ATTTTTTGAAATACATGGGTTTTAAATATTACATGAAAAATTTGGTTAGGCTTGGAATAAGGATT
AAATTGCATGAATTTCATATTCCGAGCCTAGGGACGAAATTGGAATTAATTAAAAGTTTAGGAGC
AAAACAGTAATTTTGCCAAAGATGCGAATTGAATTGAAATGAACATGAATTGATGTTAAATTCAT
TCATATAGATCCGGATAGACCAAATTCGGAGTTAGAACGAGGAAAAGAGAAAGTGTCAGATTAGT
AGATTTTACGTACACGAACATTTGTCAAGGTAAGTTCGTGTAACTAAATTATGTATATTTACATG
CTTGAATTAAATGTTTACTTGATCTGTATATTTCGAT
Found at i:72129936 original size:40 final size:40
Alignment explanation
Indices: 72129842--72129986 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
72129832 TACTCGAATG
*
72129842 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
72129883 ACATCCGGACTAAGAT-TCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
72129923 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
72129963 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
72129987 CTTGTGTGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:72132603 original size:94 final size:94
Alignment explanation
Indices: 72132442--72132630 Score: 360
Period size: 94 Copynumber: 2.0 Consensus size: 94
72132432 TCTATAGTAT
72132442 GATAGTAATCTCATATAAAAAATTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
1 GATAGTAATCTCATATAAAAAATTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
72132507 GACCAAATTTCACAAATTGCAAAAGTTGA
66 GACCAAATTTCACAAATTGCAAAAGTTGA
* *
72132536 GATAGTAATGTCATATAAAAATTTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
1 GATAGTAATCTCATATAAAAAATTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
72132601 GACCAAATTTCACAAATTGCAAAAGTTGA
66 GACCAAATTTCACAAATTGCAAAAGTTGA
72132630 G
1 G
72132631 TTCTAATAGT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (94 bp):
GATAGTAATCTCATATAAAAAATTTGTAAAGAAATTTTACCGATTACATGTTTAATTTGATAAAA
GACCAAATTTCACAAATTGCAAAAGTTGA
Found at i:72134008 original size:23 final size:26
Alignment explanation
Indices: 72133981--72134038 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
72133971 AGCTTAGATA
72133981 AGCTTCCT-AAT-A-GGCTCTTTGTG
1 AGCTTCCTGAATAATGGCTCTTTGTG
*
72134004 AGCTTCCTGATTAATGGCTCTTTGTG
1 AGCTTCCTGAATAATGGCTCTTTGTG
*
72134030 AGTTTCCTG
1 AGCTTCCTG
72134039 TTATATGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 8 0.27
24 2 0.07
25 1 0.03
26 19 0.63
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (26 bp):
AGCTTCCTGAATAATGGCTCTTTGTG
Found at i:72134026 original size:26 final size:25
Alignment explanation
Indices: 72133988--72134046 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 25
72133978 ATAAGCTTCC
72133988 TAATAGGCTCTTTGTGAGCTTCCTGAT
1 TAAT-GGCTCTTTGTGAGCTTCCTG-T
*
72134015 TAATGGCTCTTTGTGAGTTTCCTGT
1 TAATGGCTCTTTGTGAGCTTCCTGT
72134040 TATATGG
1 TA-ATGG
72134047 ATCGAGAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 3 0.10
26 23 0.77
27 4 0.13
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44
Consensus pattern (25 bp):
TAATGGCTCTTTGTGAGCTTCCTGT
Found at i:72135063 original size:13 final size:13
Alignment explanation
Indices: 72135045--72135071 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72135035 TAAGTAATCG
72135045 CACACGGGCGTGT
1 CACACGGGCGTGT
72135058 CACACGGGCGTGT
1 CACACGGGCGTGT
72135071 C
1 C
72135072 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:72137208 original size:11 final size:11
Alignment explanation
Indices: 72137192--72137219 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
72137182 AGGTGTTTCA
72137192 CAAGATCATCC
1 CAAGATCATCC
72137203 CAAGATCATCC
1 CAAGATCATCC
72137214 CAAGAT
1 CAAGAT
72137220 GGATTCAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.32, G:0.11, T:0.18
Consensus pattern (11 bp):
CAAGATCATCC
Found at i:72143192 original size:25 final size:25
Alignment explanation
Indices: 72143164--72143225 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
72143154 GTGAGCCATG
72143164 TAACGGGAAGCTTATCCAGGCTGTA
1 TAACGGGAAGCTTATCCAGGCTGTA
*
72143189 TAACGGGAAGCTTATCCGGGCTGTA
1 TAACGGGAAGCTTATCCAGGCTGTA
72143214 TAACGGGAAGCT
1 TAACGGGAAGCT
72143226 CATAAGAGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (25 bp):
TAACGGGAAGCTTATCCAGGCTGTA
Found at i:72143298 original size:25 final size:25
Alignment explanation
Indices: 72143270--72143321 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
72143260 AATAATGGGT
*
72143270 AGCTCCGAAAAGCTAT-TAATCGAGA
1 AGCTCCGAAAAGCCATAT-ATCGAGA
* *
72143295 AGCTCTGAATAGCCATATATCGAGA
1 AGCTCCGAAAAGCCATATATCGAGA
72143320 AG
1 AG
72143322 TTCAAGCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (25 bp):
AGCTCCGAAAAGCCATATATCGAGA
Found at i:72157503 original size:40 final size:40
Alignment explanation
Indices: 72157459--72157722 Score: 388
Period size: 40 Copynumber: 6.6 Consensus size: 40
72157449 AAGTGAATAT
* * * * **
72157459 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
*
72157499 ATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
72157539 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
72157579 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
72157619 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
72157659 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
72157698 ATCCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
72157723 TGAACGAGGA
Statistics
Matches: 210, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 36 0.17
40 174 0.83
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:72157557 original size:80 final size:80
Alignment explanation
Indices: 72157420--72157722 Score: 389
Period size: 80 Copynumber: 3.8 Consensus size: 80
72157410 TTGAATGCTG
* * * * * * *
72157420 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
* * **
72157482 TTTGTGCGAGATACTAAA
63 TTCGTGCGAGTTGTTAAA
*
72157500 TCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
72157565 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
72157580 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
72157645 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
* * ** * *
72157660 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
72157723 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
79 35 0.17
80 159 0.79
81 7 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTGTTAAA
Found at i:72157633 original size:120 final size:119
Alignment explanation
Indices: 72157420--72157722 Score: 396
Period size: 120 Copynumber: 2.5 Consensus size: 119
72157410 TTGAATGCTG
* * * * * *
72157420 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
*
72157483 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAA
63 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAA
*
72157540 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTC
* ** *
72157605 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAA
* * * *
72157660 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATT
72157723 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
119 35 0.22
120 121 0.75
121 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAA
Found at i:72161427 original size:39 final size:40
Alignment explanation
Indices: 72161313--72161536 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
72161303 GCTACTCGTT
* *
72161313 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
72161353 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
72161393 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
72161432 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * * * *
72161471 CAAATGCCTTC-AGATCTTAGTCCAG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
72161512 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72161537 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 74 0.46
40 75 0.46
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:72161490 original size:79 final size:79
Alignment explanation
Indices: 72161313--72161536 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 79
72161303 GCTACTCGTT
* * * * *
72161313 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGAG-CTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72161378 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* *
72161393 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGAGCTTAGCCCAGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72161456 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
72161471 CAAATGCCTTCAGATCTTAGTCCAGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GAGCTTAGCCCAGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
72161535 GA
64 GA
72161537 CATCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 34 0.27
79 59 0.46
80 34 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGAGCTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:72168143 original size:62 final size:62
Alignment explanation
Indices: 72168020--72168143 Score: 149
Period size: 62 Copynumber: 2.0 Consensus size: 62
72168010 GATACCAATA
* ** * * * **
72168020 AAATTGTAACACCCCGTACCCGAGTCCGTCGCCGGAGTCGGACACGAGGGGTTTGCAGACTT
1 AAATTGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGGGTTAACAGACTT
* * *
72168082 AAATTGTAACACCCCGAACCTGAAACCGACACCGGAGTCGAACACGAGGTGTTAACTGACTT
1 AAATTGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGGGTTAACAGACTT
72168144 TGACCCCTTA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (62 bp):
AAATTGTAACACCCCGAACCCGAAACCGACACCGGAGTCGAACACGAGGGGTTAACAGACTT
Found at i:72169464 original size:27 final size:27
Alignment explanation
Indices: 72169434--72169611 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
72169424 ATATTGAGTC
* * *
72169434 CGCACACTCAGTACTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
72169461 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
72169488 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
72169516 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
72169543 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
72169570 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
72169597 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72169612 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72169575 original size:82 final size:81
Alignment explanation
Indices: 72169455--72169610 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72169445 TACTATATAA
* *
72169455 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72169520 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72169537 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72169601 CACTTAGTGC
65 CACTTAGTGC
72169611 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72177086 original size:27 final size:27
Alignment explanation
Indices: 72177056--72177233 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
72177046 ATATTGAGTC
* * *
72177056 CGCACACTCAGTACTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
72177083 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
72177110 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
72177138 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
72177165 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
72177192 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
72177219 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
72177234 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72177197 original size:82 final size:81
Alignment explanation
Indices: 72177077--72177232 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
72177067 TACTATATAA
* *
72177077 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72177142 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
72177159 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGTA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72177223 CACTTAGTGC
65 CACTTAGTGC
72177233 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72181016 original size:79 final size:79
Alignment explanation
Indices: 72180905--72181128 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
72180895 GCTACTCGTT
* * *
72180905 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72180970 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
72180985 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72181048 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
72181063 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
72181127 GA
64 GA
72181129 CATCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 35 0.28
79 59 0.46
80 33 0.26
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:72181128 original size:40 final size:40
Alignment explanation
Indices: 72180886--72181128 Score: 284
Period size: 40 Copynumber: 6.1 Consensus size: 40
72180876 CGGAATTTAA
** *
72180886 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72180926 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72180966 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
72181005 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72181044 CCAGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72181084 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72181124 CCGGA
1 CCGGA
72181129 CATCATTCAA
Statistics
Matches: 178, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.40
40 93 0.52
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72193493 original size:43 final size:43
Alignment explanation
Indices: 72193444--72193656 Score: 192
Period size: 43 Copynumber: 5.0 Consensus size: 43
72193434 ATTACTGAGA
72193444 TGTGATTACATGTAAGAATATGTCTAGGG-CATTGGCATTGT-T
1 TGTGATTACATGTAAGAATATGTCT-GGGACATTGGCATTGTAT
**
72193486 TGGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 T-GTGATTACATGTAAGAATATGTCTGGGACATTGGCATTGTAT
* *
72193530 TGTGATTACGTGTAAG-ATCATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGAAT-ATGTCTGGGACATTGGCATTG-TAT
* * * * *
72193574 T-CGATTTCGTGTAAGACCT-TGTCTGGGACAGTGGCATTG-AT
1 TGTGATTACATGTAAGA-ATATGTCTGGGACATTGGCATTGTAT
* *
72193615 ATGTGATAACATGTAAGACCATAT-T-TGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGA--ATATGTCTGGGACATTGGCATTGTA
72193657 CGAGCTATTG
Statistics
Matches: 142, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
41 2 0.01
42 13 0.09
43 116 0.82
44 9 0.06
45 2 0.01
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGAATATGTCTGGGACATTGGCATTGTAT
Found at i:72193589 original size:86 final size:84
Alignment explanation
Indices: 72193443--72193632 Score: 233
Period size: 86 Copynumber: 2.2 Consensus size: 84
72193433 GATTACTGAG
*
72193443 ATGTGATTACATGTAAGAATATGTCTAGGGCATTGGCATTGTTTGGTGATTACATGTAAGACCAT
1 ATGTGATTACATGTAAG-ATATGTCTAGGGCATTGGCATCGTTT-GTGATTACATGTAAGACCAT
*
72193508 GTCTGGGACATTGGCATTG-T
64 GTCTGGGACAGTGGCATTGAT
* * *
72193528 ATTGTGATTACGTGTAAGATCATGTCT-GGGACATTGGCATCGTTAT-TCGATTTCGTGTAAGAC
1 A-TGTGATTACATGTAAGAT-ATGTCTAGGG-CATTGGCATCGTT-TGT-GATTACATGTAAGAC
*
72193591 CTTGTCTGGGACAGTGGCATTGAT
61 CATGTCTGGGACAGTGGCATTGAT
*
72193615 ATGTGATAACATGTAAGA
1 ATGTGATTACATGTAAGA
72193633 CCATATTTGG
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
85 7 0.08
86 81 0.89
87 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.35
Consensus pattern (84 bp):
ATGTGATTACATGTAAGATATGTCTAGGGCATTGGCATCGTTTGTGATTACATGTAAGACCATGT
CTGGGACAGTGGCATTGAT
Found at i:72204418 original size:13 final size:13
Alignment explanation
Indices: 72204400--72204428 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72204390 TTTAGTTTAA
72204400 TTAGTTAATTAGT
1 TTAGTTAATTAGT
72204413 TTAGTTAATTAGT
1 TTAGTTAATTAGT
72204426 TTA
1 TTA
72204429 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:72207568 original size:40 final size:40
Alignment explanation
Indices: 72207538--72207710 Score: 285
Period size: 40 Copynumber: 4.3 Consensus size: 40
72207528 GGACTAAGAT
*
72207538 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
72207578 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
*
72207618 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
72207658 CCGAAGGCATTTGTGCGAGTTACTACAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTA-AATCCGGGTTAAGTC
72207698 CCGAAGGCATTTG
1 CCGAAGGCATTTG
72207711 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
40 126 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:72207699 original size:120 final size:120
Alignment explanation
Indices: 72207484--72207710 Score: 298
Period size: 120 Copynumber: 1.9 Consensus size: 120
72207474 TTTGAATGAT
* * *
72207484 ATCCGGGCTAAGTCCCGACGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTT
1 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
72207549 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
66 TGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* * * * **
72207604 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
72207667 TTTGTGCGAGTTACTACAA-CCGGGCTATGTCCCGAAGGCATTTG
64 TTTGTGCGAGATACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
72207711 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
119 1 0.01
120 82 0.89
121 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:72207728 original size:80 final size:80
Alignment explanation
Indices: 72207484--72207743 Score: 255
Period size: 80 Copynumber: 3.3 Consensus size: 80
72207474 TTTGAATGAT
* * * * * *
72207484 ATCCGGGCTAAGTCCCGACGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGC
* **
72207546 CTTTGTGCGAGAT-ACTAA
63 ATTTGAACGAG-TGACTAA
*
72207564 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
** *
72207629 TGTGCGAGTTACTAA
66 TGAACGAGTGACTAA
* *
72207644 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA-CCGGGCTATGTCCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCTAAGTCCCGAAGGCAT
*
72207708 TTGAACGAG-GAGCTAT
65 TTGAACGAGTGA-CTAA
* *
72207724 ATCC-GGTTAAATTCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
72207744 TACGTGATTT
Statistics
Matches: 157, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.11
80 128 0.82
81 11 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
TGAACGAGTGACTAA
Found at i:72207728 original size:120 final size:120
Alignment explanation
Indices: 72207482--72207743 Score: 291
Period size: 120 Copynumber: 2.2 Consensus size: 120
72207472 TATTTGAATG
* * * *
72207482 ATATCCGGGCTAAGTCCCGACGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCC
1 ATATCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA
* **
72207547 TTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
66 TTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGATACT
* * * * **
72207602 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGG
* * *
72207665 CATTTGTGCGAGTTACTACAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-GCT
64 CATTTGTGCGAGATACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA-GATACT
* *
72207722 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGG
72207744 TACGTGATTT
Statistics
Matches: 119, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
119 15 0.13
120 93 0.78
121 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
ATATCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA
TTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGATACT
Found at i:72214778 original size:47 final size:47
Alignment explanation
Indices: 72214709--72215144 Score: 701
Period size: 47 Copynumber: 9.1 Consensus size: 47
72214699 TATGAAATGA
72214709 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
72214756 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
72214805 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
*
72214854 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
72214901 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
72214948 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
72214995 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
72215042 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * * *
72215091 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAATTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
72215138 TGATAAG
1 TGATAAG
72215145 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 237 0.64
49 133 0.36
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:72215319 original size:37 final size:37
Alignment explanation
Indices: 72215263--72215341 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
72215253 CCGAGCTCTA
* * * *
72215263 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
72215300 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72215337 AAGAC
1 AAGAC
72215342 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72217570 original size:49 final size:49
Alignment explanation
Indices: 72217514--72217611 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
72217504 TGTAGCCGAA
72217514 TTCTACATCACTCTTTTCCCACCTCTTCTTTTATGTTTCCTCCTCATCT
1 TTCTACATCACTCTTTTCCCACCTCTTCTTTTATGTTTCCTCCTCATCT
72217563 TTCTACATCACTCTTTTCCCACCTCTTCTTTTATGTTTCCTCCTCATCT
1 TTCTACATCACTCTTTTCCCACCTCTTCTTTTATGTTTCCTCCTCATCT
72217612 GTCGGTTTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.12, C:0.37, G:0.02, T:0.49
Consensus pattern (49 bp):
TTCTACATCACTCTTTTCCCACCTCTTCTTTTATGTTTCCTCCTCATCT
Found at i:72218134 original size:27 final size:27
Alignment explanation
Indices: 72218104--72218325 Score: 161
Period size: 27 Copynumber: 8.3 Consensus size: 27
72218094 GCAATTACTG
*
72218104 AAATACCCTCGAAGGGTAAAATTACCA
1 AAATACCCTCGAAGGGTAAAATTATCA
* * * **
72218131 AAATACCCTTGATGGATTAAAATTATTG
1 AAATACCCTCGAAGG-GTAAAATTATCA
* *
72218159 AAATACCCTCAAAGGGTAAAATTA-CT
1 AAATACCCTCGAAGGGTAAAATTATCA
* * *
72218185 GAATATCCTCGATGGGTAAAATTATCA
1 AAATACCCTCGAAGGGTAAAATTATCA
* *
72218212 AAATACCCCCGATGGGTAAAATTA-CTA
1 AAATACCCTCGAAGGGTAAAATTATC-A
* ** *
72218239 AAA-A-CCTCGAATTGGTAATTTTACCA
1 AAATACCCTCGAA-GGGTAAAATTATCA
*
72218265 AAATACCC-CCAATGGGTAAAATTATC-
1 AAATACCCTCGAA-GGGTAAAATTATCA
* * *
72218291 GAATACCC-CTATAGGGTAAAATTATCG
1 AAATACCCTCGA-AGGGTAAAATTATCA
72218318 AAATACCC
1 AAATACCC
72218326 CTGTAGGATA
Statistics
Matches: 153, Mismatches: 33, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
25 5 0.03
26 56 0.37
27 70 0.46
28 22 0.14
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATTATCA
Found at i:72218229 original size:53 final size:52
Alignment explanation
Indices: 72218104--72218326 Score: 187
Period size: 53 Copynumber: 4.2 Consensus size: 52
72218094 GCAATTACTG
* * ** * * **
72218104 AAATACCCTCGAAGGGTAAAATTACCAAAATACCCTTGATGGATTAAAATTATTG
1 AAATACCCCCAAAGGGTAAAATTA-CTGAATA-CCTCGATGG-GTAAAATTATCA
*
72218159 AAATACCCTCAAAGGGTAAAATTACTGAATATCCTCGATGGGTAAAATTATCA
1 AAATACCCCCAAAGGGTAAAATTACTGAATA-CCTCGATGGGTAAAATTATCA
* * * * * ** *
72218212 AAATACCCCCGATGGGTAAAATTACTAAAAACCTCGAATTGGTAATTTTACCA
1 AAATACCCCCAAAGGGTAAAATTACTGAATACCTCG-ATGGGTAAAATTATCA
* * * *
72218265 AAATACCCCCAATGGGTAAAATTA-TCGAATACCCCTATAGGGTAAAATTATCG
1 AAATACCCCCAAAGGGTAAAATTACT-GAATACCTCGAT-GGGTAAAATTATCA
72218318 AAATACCCC
1 AAATACCCC
72218327 TGTAGGATAA
Statistics
Matches: 138, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
52 8 0.06
53 94 0.68
54 13 0.09
55 23 0.17
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (52 bp):
AAATACCCCCAAAGGGTAAAATTACTGAATACCTCGATGGGTAAAATTATCA
Found at i:72218296 original size:26 final size:27
Alignment explanation
Indices: 72218160--72218326 Score: 112
Period size: 26 Copynumber: 6.3 Consensus size: 27
72218150 AAATTATTGA
* * *
72218160 AATACCCTCAAAGGGTAAAATTA-CTG
1 AATACCCCCAATGGGTAAAATTATCAG
* * * *
72218186 AATATCCTCGATGGGTAAAATTATCAA
1 AATACCCCCAATGGGTAAAATTATCAG
*
72218213 AATACCCCCGATGGGTAAAATTA-CTA-
1 AATACCCCCAATGGGTAAAATTATC-AG
* * * * ** * *
72218239 AAAACCTCGAATTGGTAATTTTACCAA
1 AATACCCCCAATGGGTAAAATTATCAG
72218266 AATACCCCCAATGGGTAAAATTATC-G
1 AATACCCCCAATGGGTAAAATTATCAG
*
72218292 AATA-CCCCTATAGGGTAAAATTATC-G
1 AATACCCCCAAT-GGGTAAAATTATCAG
72218318 AAATACCCC
1 -AATACCCC
72218327 TGTAGGATAA
Statistics
Matches: 111, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
25 6 0.05
26 56 0.50
27 46 0.41
28 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (27 bp):
AATACCCCCAATGGGTAAAATTATCAG
Found at i:72218332 original size:27 final size:26
Alignment explanation
Indices: 72218278--72218339 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 26
72218268 TACCCCCAAT
72218278 GGGTAAAATTATCGAATACCCCTATA
1 GGGTAAAATTATCGAATACCCCTATA
*
72218304 GGGTAAAATTATCGAAATACCCCTGTA
1 GGGTAAAATTATCG-AATACCCCTATA
*
72218331 GGATAAAAT
1 GGGTAAAAT
72218340 GATTTGATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 14 0.42
27 19 0.58
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (26 bp):
GGGTAAAATTATCGAATACCCCTATA
Found at i:72219265 original size:1 final size:1
Alignment explanation
Indices: 72219120--72219247 Score: 238
Period size: 1 Copynumber: 128.0 Consensus size: 1
72219110 TGAAAAAATT
* *
72219120 AAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
72219185 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
72219248 CTTAAAAGAA
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 123 1.00
ACGTcount: A:0.98, C:0.00, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:72220763 original size:40 final size:39
Alignment explanation
Indices: 72220705--72220866 Score: 164
Period size: 40 Copynumber: 4.1 Consensus size: 39
72220695 ATACTATTTG
* * * * *
72220705 ATTCAGGGTTACCAAAGTATAAACAAGGGCATGCATGTGC
1 ATTCAGGG-TATCGAAGTACAAACAAGGGCACGTATGTGC
* *
72220745 ATTCAGGGATATCGAAGTACAATCAAGGGCATGTATGTGC
1 ATTCAGGG-TATCGAAGTACAAACAAGGGCACGTATGTGC
* * * *
72220785 ATTCAGGGGTA-CTGAAGTATAATCAAGGGCACGTGTGTAC
1 ATTCA-GGGTATC-GAAGTACAAACAAGGGCACGTATGTGC
*
72220825 ATTCAGAGGTATCGAAGTACAAACAGGGGCACGTATGTGC
1 ATTCAG-GGTATCGAAGTACAAACAAGGGCACGTATGTGC
72220865 AT
1 AT
72220867 CTAGACAATA
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 97 0.94
41 4 0.04
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (39 bp):
ATTCAGGGTATCGAAGTACAAACAAGGGCACGTATGTGC
Found at i:72220838 original size:80 final size:80
Alignment explanation
Indices: 72220705--72220866 Score: 209
Period size: 80 Copynumber: 2.0 Consensus size: 80
72220695 ATACTATTTG
* * * *
72220705 ATTCAGGGTTACCAAAGTATAAACAAGGGCATGCATGTGCATTCAGGGATATCGAAGTACAATCA
1 ATTCAGGGGTACCAAAGTATAAACAAGGGCACGCATGTACATTCAGGGATATCGAAGTACAAACA
*
72220770 AGGGCATGTATGTGC
66 AGGGCACGTATGTGC
** * **
72220785 ATTCAGGGGTACTGAAGTATAATCAAGGGCACGTGTGTACATTCAGAGG-TATCGAAGTACAAAC
1 ATTCAGGGGTACCAAAGTATAAACAAGGGCACGCATGTACATTCAG-GGATATCGAAGTACAAAC
*
72220849 AGGGGCACGTATGTGC
65 AAGGGCACGTATGTGC
72220865 AT
1 AT
72220867 CTAGACAATA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (80 bp):
ATTCAGGGGTACCAAAGTATAAACAAGGGCACGCATGTACATTCAGGGATATCGAAGTACAAACA
AGGGCACGTATGTGC
Found at i:72224258 original size:47 final size:47
Alignment explanation
Indices: 72224182--72224301 Score: 141
Period size: 47 Copynumber: 2.6 Consensus size: 47
72224172 CTTCGGGACT
* * * * * *
72224182 TATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * *
72224229 TGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
*
72224276 TATCACATATATACACCTTCACATTC
1 TATCACATATATACACTTTCACATTC
72224302 NNNNNNNNNN
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:72235729 original size:40 final size:40
Alignment explanation
Indices: 72235681--72235864 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
72235671 GCTACTCGTT
*
72235681 CAAATGCCTTCGGGACATAGCCCGG-TTGTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * * *
72235721 TAATTGCCTTCGGGATTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
72235761 CAAATG-CTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
72235799 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
72235840 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72235865 CATCATTCAA
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 29 0.24
39 11 0.09
40 66 0.55
41 13 0.11
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:72235797 original size:78 final size:82
Alignment explanation
Indices: 72235681--72235864 Score: 211
Period size: 78 Copynumber: 2.3 Consensus size: 82
72235671 GCTACTCGTT
* * * *
72235681 CAAATGCCTTCGGGACATAGCCCGG-TTGTAGTAACTCGCATAATTGCCTTCGGGAT-TTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
72235744 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
72235761 CAAATG-CTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
72235823 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
72235840 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72235865 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
77 4 0.05
78 44 0.50
79 23 0.26
80 17 0.19
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:72251488 original size:93 final size:93
Alignment explanation
Indices: 72251376--72251547 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
72251366 GCCCATAAGT
*
72251376 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72251440 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
72251469 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAGGTGAACTGGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72251534 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72251548 CAAATATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72251543 original size:46 final size:45
Alignment explanation
Indices: 72251368--72251542 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
72251358 TGTAACCCGC
* * *
72251368 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGTAT
* *
72251414 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTA--T
* * *
72251460 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGTAT
* *
72251507 CCATAGGTGAACTGGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
72251543 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 63 0.59
47 31 0.29
48 2 0.02
49 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTAT
Found at i:72259980 original size:10 final size:10
Alignment explanation
Indices: 72259965--72260027 Score: 72
Period size: 10 Copynumber: 5.9 Consensus size: 10
72259955 ATGAAAATGT
72259965 TTAATTTTAA
1 TTAATTTTAA
72259975 TTAATTTTATAA
1 TTAA-TTT-TAA
72259987 TTAATTTTATAA
1 TTAA-TTT-TAA
*
72259999 TTAATTTTGA
1 TTAATTTTAA
*
72260009 TGAATTTTAA
1 TTAATTTTAA
72260019 TTAATTTTA
1 TTAATTTTA
72260028 TAAAGTATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
10 22 0.47
11 6 0.13
12 19 0.40
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:72259989 original size:12 final size:12
Alignment explanation
Indices: 72259972--72260030 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
72259962 TGTTTAATTT
72259972 TAATTAATTTTA
1 TAATTAATTTTA
72259984 TAATTAATTTTA
1 TAATTAATTTTA
72259996 TAATTAA-TTT-
1 TAATTAATTTTA
* *
72260006 TGATGAA-TTT-
1 TAATTAATTTTA
72260016 TAATTAATTTTA
1 TAATTAATTTTA
72260028 TAA
1 TAA
72260031 AGTATCAAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
10 13 0.32
11 6 0.15
12 22 0.54
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (12 bp):
TAATTAATTTTA
Found at i:72265996 original size:43 final size:43
Alignment explanation
Indices: 72265906--72266190 Score: 158
Period size: 43 Copynumber: 6.5 Consensus size: 43
72265896 TCTGCTCCAC
* *
72265906 TGCTACCTTA-GAGAGATAAGATCTACAATCATCAATCTGCT-TCCT
1 TGCTACCTCAGGA-AGATAAGA-CT-CAATCTTCAATCTGCTCT-CT
*
72265951 TGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCT
1 TGCTACCTCAGGAAGATAAGACTCAATCTTCAATCTGCTCTCT
* * * * *
72265994 TGCTACCTCAGAAAGATAAGGCTTGAAGGCTTAAATCTGCTC-CAT
1 TGCTACCTCAGGAAGATAAGAC-TCAA-TCTTCAATCTGCTCTC-T
* * ** * *
72266039 TG-T-CGATACATGG-AGATAAGATTCGCCTCTTCCGATCTGCTCCACT
1 TGCTAC-CT-CA-GGAAGATAAGACTC-AATCTT-CAATCTGCT-CTCT
* * * * *
72266085 AG-T-GCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCT-TCCT
1 TGCTACCTCAGGAAGATAAGA-C-TCAATCTTCAATCTGCTCT-CT
*
72266128 TGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCT
1 TGCTACCTCAGGAAGATAAGACTCAATCTTCAATCTGCTCTCT
*
72266171 TACTACCTCA-GAGAGATAAG
1 TGCTACCTCAGGA-AGATAAG
72266191 GCTTAGGGAC
Statistics
Matches: 184, Mismatches: 36, Indels: 42
0.70 0.14 0.16
Matches are distributed among these distances:
42 2 0.01
43 75 0.41
44 32 0.17
45 65 0.35
46 9 0.05
47 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
TGCTACCTCAGGAAGATAAGACTCAATCTTCAATCTGCTCTCT
Done.