Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 219 of 320
Found at i:73099237 original size:24 final size:24
Alignment explanation
Indices: 73099210--73099256 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
73099200 TACGAAAATA
73099210 ATAC-TATAAAAAAAGTATATATAT
1 ATACATATAAAAAAA-TATATATAT
*
73099234 ATACATATAATAAAATATATATA
1 ATACATATAAAAAAATATATATA
73099257 CTAAGATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (24 bp):
ATACATATAAAAAAATATATATAT
Found at i:73100089 original size:14 final size:14
Alignment explanation
Indices: 73100032--73100080 Score: 89
Period size: 14 Copynumber: 3.4 Consensus size: 14
73100022 TGATGACATT
73100032 AATAATAGATACTAA
1 AATAATA-ATACTAA
73100047 AATAATAATACTAA
1 AATAATAATACTAA
73100061 AATAATAATACTAA
1 AATAATAATACTAA
73100075 AATAAT
1 AATAAT
73100081 TAACTTAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 27 0.79
15 7 0.21
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (14 bp):
AATAATAATACTAA
Found at i:73102105 original size:89 final size:89
Alignment explanation
Indices: 73101899--73102502 Score: 517
Period size: 89 Copynumber: 6.8 Consensus size: 89
73101889 TTTATTCTTA
* ** * * * * *
73101899 CTCGACATGTGATCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGA-CTCTTTAAAAACAGA
1 CTCGACA-GTGA-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATA
* * *
73101962 CA-TT-AAAAACAGAAATTGAAAATAG
64 -ATTTGAAAATCAGAATTTGAAAATAC
* * * * *
73101987 CTC-AGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTG-AAACTTA
1 CTCGA-C-AGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATA
* *
73102050 ATTTGAAAATTC-GATTTTGAAAGTAC
64 ATTTGAAAA-TCAGAATTTGAAAATAC
73102076 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATA
1 CTCGACA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACATA
* * *
73102140 AATTGAAAAACAGAATTTGAAAATAG
64 ATTTGAAAATCAGAATTTGAAAATAC
* * * * * * * *
73102166 CTCAAAACGTGAGCCAAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAGCAGAA
1 CTCGACA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAA
* *
73102231 TTT-ACAAAGCAGATTTTGAAAATAC
65 TTTGA-AAATCAGAATTTGAAAATAC
* **
73102256 CTCGACATGTGA-CCGAGGCTCAACTCATCTCTTACAATATGAGTTGATTTTTTTGAAAAGCATA
1 CTCGACA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CATA
** *
73102320 AACTGAAAA-CAGAAATTGAAAATAC
64 ATTTGAAAATCAGAATTTGAAAATAC
* * * * *
73102345 CTC-AGC-GTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAAGTAGA
1 CTCGA-CAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CATA
*
73102408 ATTTGAAAAGT-AGAAATTGAAAATAC
64 ATTTGAAAA-TCAGAATTTGAAAATAC
73102434 CTCCG-C-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAT
1 CT-CGACAGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CAT
*
73102494 AAATTGAAA
63 AATTTGAAA
73102503 TTACCTCAGC
Statistics
Matches: 424, Mismatches: 69, Indels: 47
0.79 0.13 0.09
Matches are distributed among these distances:
87 27 0.06
88 105 0.25
89 172 0.41
90 112 0.26
91 8 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (89 bp):
CTCGACAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACATAAT
TTGAAAATCAGAATTTGAAAATAC
Found at i:73102147 original size:14 final size:14
Alignment explanation
Indices: 73102128--73102162 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
73102118 AGTTGATTTT
*
73102128 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
73102142 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
73102156 TTGAAAA
1 TTGAAAA
73102163 TAGCTCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:73102197 original size:179 final size:177
Alignment explanation
Indices: 73101899--73102502 Score: 703
Period size: 179 Copynumber: 3.4 Consensus size: 177
73101889 TTTATTCTTA
* ** * * * *
73101899 CTCGACATGTGATCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAGA
1 CTCGACATGTGA-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATA
* *
73101962 CATT-AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
65 AATTGAAAAACAGAAATTGAAAATAGCTCA-AGCGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
* * *
73102026 ATGAGTTGGTTTTTTTGAAACTTAATTTGAAAATTCGATTTTGAAAGTAC
129 ATGAGTTGATTTTTTTGAAACTGAATTTGAAAA-TCGATTTTGAAAATAC
73102076 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAA
1 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAA
* * *
73102141 ATTGAAAAACAGAATTTGAAAATAGCTCAAAACGTGAGCCAAGGCTGAACTCACCTCTCGCAATA
66 ATTGAAAAACAGAAATTGAAAATAGCTC-AAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
* * *
73102206 TGAGTTGATTTTTTTGAGAGCAGAATTT-ACAAAGCAGATTTTGAAAATAC
130 TGAGTTGATTTTTTTGA-AACTGAATTTGA-AAATC-GATTTTGAAAATAC
* ** *
73102256 CTCGACATGTGA-CCGAGGCTCAACTCATCTCTTACAATATGAGTTGATTTTTTTGAAAAGCATA
1 CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATA
* * * * *
73102320 AACTG-AAAACAGAAATTGAAAATACCTC-AGCGTG-TCCTGAGGCTCAACTCACCTCTTGCAAT
65 AATTGAAAAACAGAAATTGAAAATAGCTCAAGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
* * **
73102382 ATGAGTTGATTTTTTTGAAAAGTAGAATTTGAAAAGTAGAAATTGAAAATAC
129 ATGAGTTGATTTTTTTG-AAACT-GAATTTGAAAA-TCGATTTTGAAAATAC
*
73102434 CTCCG-C--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGCAT
1 CT-CGACATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAT
73102494 AAATTGAAA
64 AAATTGAAA
73102503 TTACCTCAGC
Statistics
Matches: 369, Mismatches: 41, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
175 19 0.05
176 13 0.04
177 117 0.32
178 36 0.10
179 129 0.35
180 55 0.15
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (177 bp):
CTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAA
ATTGAAAAACAGAAATTGAAAATAGCTCAAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAACTGAATTTGAAAATCGATTTTGAAAATAC
Found at i:73102414 original size:14 final size:14
Alignment explanation
Indices: 73102395--73102430 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
73102385 AGTTGATTTT
73102395 TTTGAAAAGTAGAA
1 TTTGAAAAGTAGAA
73102409 TTTGAAAAGTAGAA
1 TTTGAAAAGTAGAA
*
73102423 ATTGAAAA
1 TTTGAAAA
73102431 TACCTCCGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (14 bp):
TTTGAAAAGTAGAA
Found at i:73102528 original size:73 final size:73
Alignment explanation
Indices: 73102409--73102630 Score: 399
Period size: 73 Copynumber: 3.0 Consensus size: 73
73102399 AAAAGTAGAA
* * * * *
73102409 TTTGAAAAGTAGAAATTGAAAATACCTCCGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
73102474 AGTTGATT
66 AGTTGATT
73102482 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
73102547 AGTTGATT
66 AGTTGATT
73102555 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
73102620 AGTTGATT
66 AGTTGATT
73102628 TTT
1 TTT
73102631 TTGAAAACAG
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 144 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (73 bp):
TTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:73114845 original size:15 final size:15
Alignment explanation
Indices: 73114825--73114853 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73114815 ATGCATAATA
73114825 ATACTAAATATATAC
1 ATACTAAATATATAC
73114840 ATACTAAATATATA
1 ATACTAAATATATA
73114854 TACATAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:73115856 original size:14 final size:15
Alignment explanation
Indices: 73115829--73115863 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
73115819 TGATGACATT
73115829 AATAATAGATACTAA
1 AATAATAGATACTAA
73115844 AATAATA-ATACTAA
1 AATAATAGATACTAA
73115858 AATAAT
1 AATAAT
73115864 TAACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (15 bp):
AATAATAGATACTAA
Found at i:73120490 original size:28 final size:28
Alignment explanation
Indices: 73120437--73120520 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
73120427 CACTTTGTGC
73120437 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
73120466 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* * *
73120494 GATACTTGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
73120521 CTGGTGTGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 32 0.64
29 18 0.36
ACGTcount: A:0.19, C:0.04, G:0.30, T:0.48
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:73120532 original size:23 final size:24
Alignment explanation
Indices: 73120441--73120534 Score: 82
Period size: 28 Copynumber: 3.6 Consensus size: 24
73120431 TTGTGCTATT
73120441 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
73120468 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
*
73120498 CTTGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
73120521 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
73120535 TTGGACATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
23 16 0.28
24 1 0.02
25 2 0.04
28 17 0.30
29 14 0.25
30 5 0.09
31 2 0.04
ACGTcount: A:0.16, C:0.04, G:0.33, T:0.47
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:73120763 original size:23 final size:23
Alignment explanation
Indices: 73120725--73120831 Score: 111
Period size: 21 Copynumber: 5.0 Consensus size: 23
73120715 GCTATACTGA
* *
73120725 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTATT
*
73120748 TTAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTGTGTGTCGTATT
*
73120769 TCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTGTGTGTCGTATT
*
73120790 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTTGTGTGTCGTATT
*
73120812 T-AGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTGTGTGTCGTAT
73120832 ACTGATCAGG
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
20 10 0.14
21 42 0.58
22 3 0.04
23 18 0.25
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTTGTGTGTCGTATT
Found at i:73122071 original size:46 final size:48
Alignment explanation
Indices: 73121913--73122099 Score: 163
Period size: 46 Copynumber: 3.9 Consensus size: 48
73121903 TGGTTGGACC
73121913 ATGGCATCA-A-TGTGATATGTGA-TCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTC-GTGTAAGACCATAGCTGGGCT
* * * * *
73121959 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGAG---TGTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCT
*
73122012 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* * *
73122058 ATGGC-TACGGTGTGTGATATGTGACTAT-GTGCAAGACCATAG
1 ATGGCAT-CAGAGTGTGATATGTGA-T-TCGTGTAAGACCATAG
73122100 TTTTACTATG
Statistics
Matches: 114, Mismatches: 14, Indels: 23
0.75 0.09 0.15
Matches are distributed among these distances:
45 1 0.01
46 33 0.29
47 8 0.07
48 18 0.16
49 13 0.11
50 1 0.01
51 7 0.06
52 5 0.04
53 27 0.24
54 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:73127355 original size:40 final size:40
Alignment explanation
Indices: 73127309--73127385 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
73127299 ACATACTATG
*
73127309 TGGGGATAGAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
* *
73127349 TGGGGATATAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAA
73127386 AAGGTACCGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.35, G:0.14, T:0.14
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:73129062 original size:20 final size:19
Alignment explanation
Indices: 73129035--73129082 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
73129025 AGTTTCTTCT
73129035 TTTTTTCTTCATATTTTT-A
1 TTTTTTCTTC-TATTTTTCA
*
73129054 TTATTTTCTTCTTTTTTTCA
1 TT-TTTTCTTCTATTTTTCA
73129074 TTTTTTCTT
1 TTTTTTCTT
73129083 ATTAACCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTCTTCTATTTTTCA
Found at i:73129073 original size:28 final size:27
Alignment explanation
Indices: 73129031--73129085 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
73129021 CGATAGTTTC
73129031 TTCTTTTTTTCTTCATATTTTTATTATT
1 TTCTTTTTTTCTTCAT-TTTTTATTATT
*
73129059 TTCTTCTTTTT-TTCATTTTTTCTTATT
1 TTCTT-TTTTTCTTCATTTTTTATTATT
73129086 AACCGGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 10 0.40
28 10 0.40
29 5 0.20
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (27 bp):
TTCTTTTTTTCTTCATTTTTTATTATT
Found at i:73132034 original size:20 final size:20
Alignment explanation
Indices: 73131989--73132027 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
73131979 TTTCAATTAT
73131989 TTTAAAGTTTCATTTAAGTC
1 TTTAAAGTTTCATTTAAGTC
73132009 TTTAAAGTTTCATTTAAGT
1 TTTAAAGTTTCATTTAAGT
73132028 TATTAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTAAAGTTTCATTTAAGTC
Found at i:73133820 original size:5 final size:5
Alignment explanation
Indices: 73133810--73133855 Score: 85
Period size: 5 Copynumber: 9.4 Consensus size: 5
73133800 TTATGTTTTA
73133810 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
73133856 AAACTAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 36 0.90
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:73135552 original size:23 final size:23
Alignment explanation
Indices: 73135522--73135608 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
73135512 GCTTTATCGA
* *
73135522 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
73135545 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
73135566 TCAGGCACCTCGTGTGTC--ATT
1 TCAGGCACCTCATGTGTCGTATT
* * *
73135587 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
73135609 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.02
21 32 0.60
23 20 0.38
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:73135569 original size:21 final size:22
Alignment explanation
Indices: 73135534--73135583 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
73135524 AGGCACTTTA
73135534 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
73135557 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
73135578 TGTGTC
1 TGTGTC
73135584 ATTTTAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 18 0.67
23 9 0.33
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.34
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:73136806 original size:11 final size:11
Alignment explanation
Indices: 73136790--73136814 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73136780 TACATGCCAT
73136790 AATTGAGTCGA
1 AATTGAGTCGA
73136801 AATTGAGTCGA
1 AATTGAGTCGA
73136812 AAT
1 AAT
73136815 CGGATGCTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (11 bp):
AATTGAGTCGA
Found at i:73150221 original size:46 final size:48
Alignment explanation
Indices: 73150084--73150275 Score: 325
Period size: 48 Copynumber: 4.0 Consensus size: 48
73150074 CAAGATAAAT
* *
73150084 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
73150132 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
73150180 ATATGTATATGTGGTAAAG-C-AATGGCTAATGTCAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
73150226 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
73150274 AT
1 AT
73150276 GTGTGTATAT
Statistics
Matches: 135, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 43 0.32
47 2 0.01
48 90 0.67
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:73150267 original size:94 final size:96
Alignment explanation
Indices: 73150084--73150275 Score: 325
Period size: 94 Copynumber: 2.0 Consensus size: 96
73150074 CAAGATAAAT
* * *
73150084 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTCAAATATGTATGAGATATGTATATGTGGTAA
*
73150149 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAGTGTGAAATATGTAGGAG
*
73150180 ATATGTATATGTGGTAAAG-C-AATGGCTAATGTCAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTCAAATATGTATGAGATATGTATATGTGGTAA
73150243 AGCCGAATGGCTAGTGTGAAATATGTAGGAG
66 AGCCGAATGGCTAGTGTGAAATATGTAGGAG
73150274 AT
1 AT
73150276 GTGTGTATAT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
94 73 0.80
95 1 0.01
96 17 0.19
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (96 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTCAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATGTAGGAG
Found at i:73150500 original size:37 final size:36
Alignment explanation
Indices: 73150416--73150518 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 36
73150406 GGAAGTATAT
73150416 TCCGGGTAAGACCCGATGACTACGTGTGGGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGGATTATG
*
73150452 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGG-GATTATG
*
73150489 TCCGGGTAAGACCCGATAACTACGTGTGGG
1 TCCGGGTAAGACCCGATGACTACGTGTGGG
73150519 GACTATTCGA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
36 30 0.47
37 34 0.53
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGGATTATG
Found at i:73163353 original size:49 final size:47
Alignment explanation
Indices: 73163242--73163668 Score: 629
Period size: 47 Copynumber: 9.1 Consensus size: 47
73163232 TATGAAATGA
73163242 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
73163289 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
73163338 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
*
73163387 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
73163434 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
73163481 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
73163527 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
73163573 TGA-AA-G---AATGG-CGATGTGATG-ATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * * *
73163615 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAATTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
73163662 TGATAAG
1 TGATAAG
73163669 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 12, Indels: 26
0.90 0.03 0.07
Matches are distributed among these distances:
39 10 0.03
40 10 0.03
41 5 0.01
42 10 0.03
43 1 0.00
44 2 0.01
45 2 0.01
46 55 0.15
47 148 0.42
48 8 0.02
49 104 0.29
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:73163430 original size:96 final size:94
Alignment explanation
Indices: 73163242--73163666 Score: 625
Period size: 96 Copynumber: 4.6 Consensus size: 94
73163232 TATGAAATGA
73163242 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCC
73163307 GATGTGATGAATGTGAAAGTGTATATATATG
65 GATGTGATGAATGTGAAAGTG-ATATATATG
73163338 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA-GGCCTAATGG
73163403 CCGATGTGATGAATGTGAAAGTG-TATATATG
63 CCGATGTGATGAATGTGAAAGTGATATATATG
*
73163434 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCG
73163499 ATGTGATGAATGTGAAAGTG-TATATATG
66 ATGTGATGAATGTGAAAGTGATATATATG
*
73163527 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGA-AAG---AATGG-CG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCG
*
73163586 ATGTGATG-ATGTGGAAGTGTATATATATG
66 ATGTGATGAATGTGAAAGTG-ATATATATG
* * * * * * * * *
73163615 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAATTGTATAAATGTGATA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
73163667 AGTCCCGAAG
Statistics
Matches: 309, Mismatches: 13, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
86 10 0.03
87 10 0.03
88 44 0.14
89 9 0.03
90 1 0.00
91 2 0.01
92 10 0.03
93 79 0.26
94 13 0.04
96 85 0.28
97 1 0.00
98 45 0.15
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGATATATATG
Found at i:73163843 original size:37 final size:37
Alignment explanation
Indices: 73163787--73163865 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73163777 CCGAGCTCTA
* * * *
73163787 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
73163824 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73163861 AAGAC
1 AAGAC
73163866 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73178355 original size:47 final size:47
Alignment explanation
Indices: 73178286--73178379 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
73178276 AAATAAATGA
73178286 AAGTTTTAGGCTGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
1 AAGTTTTAGGCTGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
73178333 AAGTTTTAGGCTGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
1 AAGTTTTAGGCTGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
73178380 TTAAATTGAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTTTTAGGCTGCTAGGGACTCAAGTATAAATTGGCTAAGCATGGG
Found at i:73178857 original size:43 final size:43
Alignment explanation
Indices: 73178809--73179006 Score: 195
Period size: 43 Copynumber: 4.6 Consensus size: 43
73178799 ATTACAGAGA
*
73178809 TGTGATTACATGTAAGACCATGTTTGAGACATTGGCATTATAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTATAT
* *
73178852 TGTGATTACATTTAAGACCATGTCTGAGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTATAT
* * * *
73178895 TGTGATTACGTGTAAGACCATGTATGGGACATTAGCA-TAGTTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTA--TAT
* * * * * * *
73178939 T-CGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATA-
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCAT-TATAT
* * *
73178981 TGTGATAACATGTAATACCATATCTG
1 TGTGATTACATGTAAGACCATGTCTG
73179007 GGATATGGCA
Statistics
Matches: 127, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
42 2 0.02
43 120 0.94
44 4 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTATAT
Found at i:73200592 original size:39 final size:40
Alignment explanation
Indices: 73200479--73200647 Score: 252
Period size: 40 Copynumber: 4.2 Consensus size: 40
73200469 TTCGAATGAT
* *
73200479 ATCCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
73200519 ATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
73200559 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
73200598 ATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
73200639 A-CCGGGCTA
1 ATCCGGGCTA
73200648 TGTAAGGCAT
Statistics
Matches: 117, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 80 0.68
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:73200644 original size:79 final size:79
Alignment explanation
Indices: 73200492--73200647 Score: 251
Period size: 79 Copynumber: 2.0 Consensus size: 79
73200482 CGGGTTAGGT
* * *
73200492 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73200557 AATTCCGGGCTAAG
66 AATACCGGGCTAAG
*
73200571 CCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73200636 -ATAACCGGGCTA
66 AAT-ACCGGGCTA
73200648 TGTAAGGCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 2 0.03
79 69 0.97
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
AATACCGGGCTAAG
Found at i:73202766 original size:30 final size:30
Alignment explanation
Indices: 73202721--73202780 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
73202711 CTTTTATATG
* *
73202721 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
73202751 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
73202781 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:73209205 original size:13 final size:13
Alignment explanation
Indices: 73209187--73209226 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
73209177 GATGAAAAGT
73209187 TGAAATGTTTGAA
1 TGAAATGTTTGAA
73209200 TGAAATGTTTGAA
1 TGAAATGTTTGAA
*
73209213 TGAAGTGTTTGAA
1 TGAAATGTTTGAA
73209226 T
1 T
73209227 CAAGGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (13 bp):
TGAAATGTTTGAA
Found at i:73213434 original size:39 final size:39
Alignment explanation
Indices: 73213391--73213606 Score: 317
Period size: 39 Copynumber: 5.5 Consensus size: 39
73213381 GTGTGAGATA
* *
73213391 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
73213430 TATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
73213469 TATATCTGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
73213508 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
73213547 TATATCTGGACTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
73213585 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
73213607 CATGCTTTGT
Statistics
Matches: 159, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 20 0.13
39 131 0.82
40 8 0.05
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:73217467 original size:28 final size:28
Alignment explanation
Indices: 73217427--73217515 Score: 160
Period size: 28 Copynumber: 3.2 Consensus size: 28
73217417 ACAAGAATTT
73217427 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
73217455 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
* *
73217483 CCCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGCAAAATTACCATTATAC
73217511 CCCTA
1 CCCTA
73217516 GGGTTAATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCTATGTATGCAAAATTACCATTATAC
Found at i:73217679 original size:27 final size:27
Alignment explanation
Indices: 73217621--73217710 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
73217611 AGGAAGCGTC
73217621 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
73217649 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
73217676 CTGGTGGCACTGCCACAAAATATCTATAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
73217705 CTGGTG
1 CTGGTG
73217711 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:73217721 original size:29 final size:28
Alignment explanation
Indices: 73217631--73217721 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
73217621 CTGGTGGCTA
* * * *
73217631 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTATTCTGGTGACAC
* * *
73217659 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
*
73217686 TGCCACAAAATATCTATATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
73217715 TGTCACA
1 TGCCACA
73217722 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 14 0.26
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:73217729 original size:55 final size:56
Alignment explanation
Indices: 73217621--73217735 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
73217611 AGGAAGCGTC
* * *
73217621 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * *
73217676 CTGGTGGC-ACTGCCACAAAATATCTATATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
73217732 CTGG
1 CTGG
73217736 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:73222799 original size:43 final size:44
Alignment explanation
Indices: 73222751--73222941 Score: 203
Period size: 43 Copynumber: 4.4 Consensus size: 44
73222741 TACCGAGATG
*
73222751 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
* *
73222794 TGATTACATGTAAGACCATGTCTGGGACATTAGCATTG-TATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
* * *
73222837 TGATTACATGTAAGATCATGCCTGGGACATTAGCATCGTTATTCA
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATT-A
* * * * * * * *
73222882 --ATTTCGTGTAAAACCCTGTCTAGGACAATGGAATCGATATT-
1 TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
*
73222923 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
73222942 ATATGGGATA
Statistics
Matches: 121, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
43 117 0.97
44 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTAGCATCGATATTA
Found at i:73224909 original size:12 final size:12
Alignment explanation
Indices: 73224892--73224917 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73224882 TTATTATAGT
73224892 AAATGATAATTA
1 AAATGATAATTA
73224904 AAATGATAATTA
1 AAATGATAATTA
73224916 AA
1 AA
73224918 CGAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AAATGATAATTA
Found at i:73226886 original size:12 final size:12
Alignment explanation
Indices: 73226869--73226893 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73226859 GTTTGGCACA
73226869 GCCTAGCACACG
1 GCCTAGCACACG
73226881 GCCTAGCACACG
1 GCCTAGCACACG
73226893 G
1 G
73226894 GCATGTGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:73227971 original size:21 final size:21
Alignment explanation
Indices: 73227941--73227981 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73227931 GGAAATTGTG
**
73227941 ATTTAAAGAGAGCTTTGAGAA
1 ATTTAAAGAGAAATTTGAGAA
*
73227962 ATTTAGAGAGAAATTTGAGA
1 ATTTAAAGAGAAATTTGAGA
73227982 GCTTTTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (21 bp):
ATTTAAAGAGAAATTTGAGAA
Found at i:73230370 original size:37 final size:37
Alignment explanation
Indices: 73230305--73230450 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
73230295 AGCTCAGACG
* *
73230305 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
73230342 AAATCTCCACATGTAGTCATCAGCTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73230379 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73230416 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
73230451 ATATATTTCC
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73230722 original size:48 final size:48
Alignment explanation
Indices: 73230596--73230780 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
73230586 GCACATCGCC
*
73230596 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
73230646 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
73230694 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73230742 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
73230781 TGCATGTTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:73230785 original size:98 final size:97
Alignment explanation
Indices: 73230596--73230779 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
73230586 GCACATCGCC
*
73230596 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
73230661 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
73230694 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
73230757 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
73230780 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 45 0.56
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:73230829 original size:47 final size:47
Alignment explanation
Indices: 73230750--73230940 Score: 292
Period size: 47 Copynumber: 4.1 Consensus size: 47
73230740 CATACATATT
* * * *
73230750 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
73230797 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73230844 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
73230891 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73230938 TCA
1 TCA
73230941 TATAAAATCC
Statistics
Matches: 131, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:73230870 original size:22 final size:22
Alignment explanation
Indices: 73230843--73230914 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
73230833 GCTCACATTC
73230843 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
73230865 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
73230889 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
73230912 ATC
1 ATC
73230915 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:73234605 original size:29 final size:29
Alignment explanation
Indices: 73234571--73234639 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 29
73234561 CTGACCGATC
*
73234571 TCGCACTCATAGTG-CTCGGTTAAAGGAAT
1 TCGCACACATAGTGCCT-GGTTAAAGGAAT
73234600 TCGCACACACATAGTGCCTGGTTAAAGGAAT
1 TCG--CACACATAGTGCCTGGTTAAAGGAAT
73234631 TCGCACACA
1 TCGCACACA
73234640 CACAGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
29 9 0.25
31 25 0.69
32 2 0.06
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (29 bp):
TCGCACACATAGTGCCTGGTTAAAGGAAT
Found at i:73234614 original size:31 final size:31
Alignment explanation
Indices: 73234578--73234649 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 31
73234568 ATCTCGCACT
73234578 CATAGTG-CTCGGTTAAAGGAATTCGCACACA
1 CATAGTGCCT-GGTTAAAGGAATTCGCACACA
73234609 CATAGTGCCTGGTTAAAGGAATTCGCACACA
1 CATAGTGCCTGGTTAAAGGAATTCGCACACA
*
73234640 CACAGTGCCT
1 CATAGTGCCT
73234650 CTAATCATTC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (31 bp):
CATAGTGCCTGGTTAAAGGAATTCGCACACA
Found at i:73234893 original size:40 final size:40
Alignment explanation
Indices: 73234861--73235129 Score: 400
Period size: 40 Copynumber: 6.8 Consensus size: 40
73234851 CCAGCATGAT
* * * *
73234861 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
73234901 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAG
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
73234941 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
73234981 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73235021 TGCTCTTCGGGACTTAGCCCGGATACATCACTGGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73235061 TG--C-TCGGGACTTAGCCCGGATACATCACTGGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73235098 TGCTCTTCGGGACTTAGCCCAGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
73235130 CTCAATTCTC
Statistics
Matches: 210, Mismatches: 16, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
37 36 0.17
38 1 0.00
39 1 0.00
40 172 0.82
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:73236458 original size:37 final size:37
Alignment explanation
Indices: 73236399--73236544 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
73236389 AGCTCAGACG
* *
73236399 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
73236436 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73236473 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
73236510 TAATCTCCACACGTAGTCATCGTGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
73236545 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73236816 original size:48 final size:49
Alignment explanation
Indices: 73236690--73236826 Score: 197
Period size: 50 Copynumber: 2.8 Consensus size: 49
73236680 GCACATCGCC
*
73236690 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA-A
* *
73236740 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCAGCTTTACCACATATACATATCTCAA
* *
73236788 TACATATTTCACATTAGCCTTTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
73236827 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
48 34 0.44
49 2 0.03
50 42 0.54
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCAA
Found at i:73236868 original size:25 final size:25
Alignment explanation
Indices: 73236840--73236915 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 25
73236830 ATGTTCATAT
73236840 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* *
73236865 TCA-CACATAT-G-CATTC-TCACAT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
73236887 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
73236912 TCAC
1 TCAC
73236916 ATATATGCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 14
0.67 0.09 0.24
Matches are distributed among these distances:
22 5 0.13
23 13 0.33
24 13 0.33
25 8 0.21
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:73236875 original size:47 final size:47
Alignment explanation
Indices: 73236796--73236989 Score: 273
Period size: 47 Copynumber: 4.1 Consensus size: 47
73236786 CATACATATT
* * * * *
73236796 TCACATTAGCCTTTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
73236843 CCACATTGGCCATTCGGCCTTATCACACATATGCAT-TCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACATTCA
73236890 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
73236937 TCATATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73236984 TCACAT
1 TCACAT
73236990 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 129 0.98
48 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:73236880 original size:23 final size:23
Alignment explanation
Indices: 73236853--73236925 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
73236843 CCACATTGGC
73236853 CATTCGGCCTTATCACACATATG
1 CATTCGGCCTTATCACACATATG
* *
73236876 CATTC-TCACAT-TCATCACAT-TGG
1 CATTCGGC-CTTATCA-CACATAT-G
*
73236899 CCATTCGGCCTTATCACATATATG
1 -CATTCGGCCTTATCACACATATG
73236923 CAT
1 CAT
73236926 GTTCACATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 5 0.13
23 16 0.42
24 12 0.32
25 5 0.13
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (23 bp):
CATTCGGCCTTATCACACATATG
Found at i:73236917 original size:94 final size:93
Alignment explanation
Indices: 73236749--73236989 Score: 281
Period size: 94 Copynumber: 2.5 Consensus size: 93
73236739 ATATATATTT
* * * * *
73236749 CACATTGACCATTCAGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCTTTCG
1 CACATTGGCCATTCGGCCTTATCCACATATGCAT-TCTC--ACAT-TCATCACATTAGCCATTCG
* *
73236812 GCTTTACCACATATATGCATGTTCATATTCAC
62 GCCTTACCACATATATGCATGTTCACATTCAC
*
73236844 CACATTGGCCATTCGGCCTTATCACACATATGCATTCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATTCTCACATTCATCACATTAGCCATTCGGCC
* *
73236909 TTATCACATATATGCATGTTCACATTCAT
65 TTACCACATATATGCATGTTCACATTCAC
* * *
73236938 CATATTGGCCATTCGGCCTTATCTCATATATGCACAT-TCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATGCA-TTCTCACATTCATCACAT
73236990 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
93 1 0.01
94 92 0.72
95 19 0.15
96 5 0.04
97 11 0.09
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATTCTCACATTCATCACATTAGCCATTCGGCCT
TACCACATATATGCATGTTCACATTCAC
Found at i:73236990 original size:25 final size:25
Alignment explanation
Indices: 73236911--73236990 Score: 62
Period size: 25 Copynumber: 3.3 Consensus size: 25
73236901 ATTCGGCCTT
**
73236911 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
73236936 AT--CATAT-TGGC-CATTCGGCCTT-
1 ATCACATATAT-GCACATTC-ACATTC
*
73236958 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
73236983 ATCACATA
1 ATCACATA
73236991 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 6 0.15
23 10 0.24
24 10 0.24
25 15 0.37
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:73248285 original size:76 final size:76
Alignment explanation
Indices: 73248159--73248310 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 76
73248149 CTCTTTAAGA
*
73248159 CCTTCTAATTAATAATCTAAAGCAATTTCATGTAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
1 CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
73248224 ATTCAATTTGG
66 ATTCAATTTGG
*
73248235 CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAGGTTTTGCAATTT
1 CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
73248300 ATTCAATTTGG
66 ATTCAATTTGG
73248311 TCCCTAATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (76 bp):
CCTTCTAATTAATAATCTAAAGCAATTTCATGCAAATTGCTTCTAGAATCCAAGTTTTGCAATTT
ATTCAATTTGG
Found at i:73253718 original size:94 final size:91
Alignment explanation
Indices: 73253553--73253770 Score: 246
Period size: 94 Copynumber: 2.4 Consensus size: 91
73253543 GATTTCTTGT
* **
73253553 GTGCCAGTGTAAGACATGTCTGGGACATGCATAGGCCACATTATGAGTGCCATAGTAAGACCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCATAGTAAGACCATG
* *
73253618 TATGGGACATGTCATTGGCGT-AGAGATGA
66 GATGGGACATG-CATCGGC-TAAGAG-T-A
*
73253647 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA-TAGCCAGT-GTAAGA-C
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ACGATGAGT-GCCA-TAGTAAGACC
* * *
73253709 GTGGCTGGGACATGCATCGGCTAAGAGTT
63 ATGGATGGGACATGCATCGGCTAAGAGTA
* *
73253738 GTGCTAGTGTAAGACATGTCTGGAACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
73253771 AGCACGTATA
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
91 31 0.28
92 2 0.02
93 10 0.09
94 50 0.46
95 15 0.14
96 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCATAGTAAGACCATG
GATGGGACATGCATCGGCTAAGAGTA
Found at i:73253766 original size:44 final size:45
Alignment explanation
Indices: 73253552--73253869 Score: 207
Period size: 47 Copynumber: 6.8 Consensus size: 45
73253542 GGATTTCTTG
* * **
73253552 TGTGCCAGTGTAAGACATGTCTGGGACATGCATAGGCC-ACATTA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGA
* * *
73253596 TGAGTGCCA-TAGTAAGACCATGTATGGGACATGTCATTGGCGTAGA-GA
1 T--GTGCCAGT-GTAAGA-CATGTCTGGGACATG-CATCGGCCTAGACGA
*
73253644 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGA
1 T--GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGA
* * *
73253691 TGATAGCCAGTGTAAGACGTGGCTGGGACATGCATCGG-CTAAGA-GT
1 TG-T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AGACGA
* * * *
73253737 TGTGCTAGTGTAAGACATGTCTGGAACATGCATCAGCACGTATATACGA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C---TAGACGA
* * * * * **
73253786 -GAGCTAGTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATAA
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGACGA
*
73253832 TGATAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 TG-T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
73253870 AATAACTTAT
Statistics
Matches: 221, Mismatches: 31, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
44 29 0.13
45 3 0.01
46 31 0.14
47 65 0.29
48 36 0.16
49 49 0.22
50 8 0.04
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGACGA
Found at i:73253815 original size:49 final size:49
Alignment explanation
Indices: 73253740--73253870 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 49
73253730 TAAGAGTTGT
*
73253740 GCTAGTGTAAGA-CATGTCTGGAACAT-GCATCAG-CACGTATATACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACG-ATA-ACGAGA
* * * *
73253788 GCTAGTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATAATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATAACGAGA
* *
73253837 GCCAATGTAAGACCATGTCTGGGACATGGCATCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA
73253871 ATAACTTATC
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
48 11 0.15
49 48 0.67
50 10 0.14
51 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATAACGAGA
Found at i:73254699 original size:28 final size:29
Alignment explanation
Indices: 73254652--73254706 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
73254642 ACTAGGATTT
*
73254652 TCACACAGCCAAGCACACGCCTGTGTCCC
1 TCACACAGCCAAGCACACGCCCGTGTCCC
* *
73254681 TCACACTGCCTAG-ACACGCCCGTGTC
1 TCACACAGCCAAGCACACGCCCGTGTC
73254707 AGAAACCCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.22, C:0.44, G:0.18, T:0.16
Consensus pattern (29 bp):
TCACACAGCCAAGCACACGCCCGTGTCCC
Found at i:73256293 original size:42 final size:42
Alignment explanation
Indices: 73256163--73256314 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 42
73256153 TACCATACCA
* * * *
73256163 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAAATATGGTCTTACACGAAATCTCATATCG
* ** * *
73256205 ATGCCAATAGCCCAGCTATGGTTTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAAATATGGTCTTACACGAAATCTCATATCG
* * *
73256248 ATGCCATATCCCAAATATGGTCTTACACGAAACCTTATATAG
1 ATGCCATATCCCAAATATGGTCTTACACGAAATCTCATATCG
*
73256290 ATGCCATATCAC-AATATGGTCTTAC
1 ATGCCATATCCCAAATATGGTCTTAC
73256315 TCTAATCTCA
Statistics
Matches: 93, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 13 0.14
42 45 0.48
43 35 0.38
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACGAAATCTCATATCG
Found at i:73262757 original size:65 final size:66
Alignment explanation
Indices: 73262648--73262773 Score: 227
Period size: 65 Copynumber: 1.9 Consensus size: 66
73262638 TGTGGACAGC
* *
73262648 CAAATTGTAACACCCCGAACCCGAGACCGACACCGGAGTCGAACACGAGGTGTTAGCAGACCAAA
1 CAAATTGTAACACCCCGAACCCGAGACCGACACCGAAGTCGAACACGAAGTGTTAGCAGACCAAA
73262713 T
66 T
73262714 CAAA-TGTAACACCCCGAACCCGAGACCGACACCGAAGTCGAACACGAAGTGTTAGCAGAC
1 CAAATTGTAACACCCCGAACCCGAGACCGACACCGAAGTCGAACACGAAGTGTTAGCAGAC
73262774 TTTAAACCCC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
65 54 0.93
66 4 0.07
ACGTcount: A:0.36, C:0.31, G:0.22, T:0.11
Consensus pattern (66 bp):
CAAATTGTAACACCCCGAACCCGAGACCGACACCGAAGTCGAACACGAAGTGTTAGCAGACCAAA
T
Found at i:73264193 original size:39 final size:40
Alignment explanation
Indices: 73264076--73264260 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
73264066 GCTACTCGTT
*
73264076 CAAATGCCTTCGGGACATAGCCCGG-TTGTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * * *
73264116 TAATTGCCTTCGGGATTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
73264156 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
73264195 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73264236 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73264261 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 73 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73264193 original size:79 final size:82
Alignment explanation
Indices: 73264076--73264260 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
73264066 GCTACTCGTT
* * * *
73264076 CAAATGCCTTCGGGACATAGCCCGG-TTGTAGTAACTCGCATAATTGCCTTCGGGAT-TTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
73264139 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
73264156 CAAATGCCTTCAGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
73264219 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
73264236 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73264261 CATCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 4 0.05
79 51 0.58
80 33 0.38
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:73270811 original size:65 final size:65
Alignment explanation
Indices: 73270707--73270834 Score: 229
Period size: 65 Copynumber: 2.0 Consensus size: 65
73270697 CTCTGATACC
* **
73270707 AATCAAATGTAACACCCTGAACCCGAGACTGACACCGGAGTCGAACACGAGGTGTTAGCAGACCA
1 AATCAAATGTAACACCCCGAACCCGAGACCAACACCGGAGTCGAACACGAGGTGTTAGCAGACCA
73270772 AATCAAATGTAACACCCCGAACCCGAGACCAACACCGGAGTCGAACACGAGGTGTTAGCAGAC
1 AATCAAATGTAACACCCCGAACCCGAGACCAACACCGGAGTCGAACACGAGGTGTTAGCAGAC
73270835 TTTAAACCCC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.36, C:0.29, G:0.23, T:0.12
Consensus pattern (65 bp):
AATCAAATGTAACACCCCGAACCCGAGACCAACACCGGAGTCGAACACGAGGTGTTAGCAGACCA
Found at i:73272254 original size:39 final size:39
Alignment explanation
Indices: 73272137--73272321 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 39
73272127 GCTACTCGTT
*
73272137 CAAATGCCTTCAGGATATAGCCCGG-TTGTAGTAACTCGCA
1 CAAATGCCTTCGGGAT-TAGCCCGGATT-TAGTAACTCGCA
* * *
73272177 TAATTGCCTTCGGGATTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-TTAGCCCGGATTTAGTAACTCGCA
* * *
73272217 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGATTAGCCCGGATTTAGTAACTCGCA
* * * * *
73272256 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA--TTAGCCCGGATTTAGTAAC-TCGCA
*
73272297 CAAA-GCCTTCGGGACTTATCCCGGA
1 CAAATGCCTTCGGGA-TTAGCCCGGA
73272322 CATCATTCAA
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 71 0.60
41 14 0.12
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGATTAGCCCGGATTTAGTAACTCGCA
Found at i:73272254 original size:79 final size:81
Alignment explanation
Indices: 73272137--73272321 Score: 191
Period size: 79 Copynumber: 2.3 Consensus size: 81
73272127 GCTACTCGTT
* * * * *
73272137 CAAATGCCTTCAGGATATAGCCCGG-TTGTAGTAACTCGCATAATTGCCTTCGGGAT-TTAACCC
1 CAAATGCCTTCGGGCT-TAGCCCGGAATGTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
73272200 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
73272217 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
73272281 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
73272297 CAAA-GCCTTCGGGACTTATCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
73272322 CATCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 4 0.05
79 51 0.58
80 33 0.38
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATGTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:73274252 original size:79 final size:78
Alignment explanation
Indices: 73274150--73274372 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
73274140 GCTCCTCGTT
* *
73274150 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
73274215 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
73274230 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
73274293 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
73274308 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
73274371 GA
63 GA
73274373 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:73274267 original size:39 final size:40
Alignment explanation
Indices: 73274150--73274372 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
73274140 GCTCCTCGTT
* *
73274150 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
73274190 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
73274230 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
73274269 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
73274308 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
73274349 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73274373 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:73293870 original size:40 final size:40
Alignment explanation
Indices: 73293811--73294078 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
73293801 GAGCATTGGA
*
73293811 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
73293851 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
73293891 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
73293931 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
73293971 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
73294011 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
73294051 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
73294079 ATGTGTTTGC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:73297465 original size:48 final size:48
Alignment explanation
Indices: 73297394--73297606 Score: 327
Period size: 48 Copynumber: 4.4 Consensus size: 48
73297384 CAAGATAAAT
* * * *
73297394 ATATATATGTGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73297442 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
73297490 ATATGTATATATAGTAAAGCTGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
73297538 ATATGTTTATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73297586 ATATGTATATGTGGTAAAGCC
1 ATATGTATATGTGGTAAAGCC
73297607 ATATATGTAT
Statistics
Matches: 150, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73297612 original size:23 final size:23
Alignment explanation
Indices: 73297586--73297629 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
73297576 TATGTATGAG
73297586 ATATGTATATGTGGTAAAGCCAT
1 ATATGTATATGTGGTAAAGCCAT
73297609 ATATGTATATGTGGTAAAGCC
1 ATATGTATATGTGGTAAAGCC
73297630 GAATGGCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (23 bp):
ATATGTATATGTGGTAAAGCCAT
Found at i:73297620 original size:71 final size:71
Alignment explanation
Indices: 73297538--73297677 Score: 253
Period size: 71 Copynumber: 2.0 Consensus size: 71
73297528 TATATATGAG
* * *
73297538 ATATGTTTATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
73297603 AGCCAT
66 AGCCAT
73297609 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
73297674 AGCC
66 AGCC
73297678 GAATGGCTAG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (71 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCAT
Found at i:73297637 original size:119 final size:119
Alignment explanation
Indices: 73297490--73297706 Score: 371
Period size: 119 Copynumber: 1.8 Consensus size: 119
73297480 TATGTATGAG
* *
73297490 ATATGTATATATAGTAAAGCTGAATGGCTAATGTGAAATATATATGAGATATGTTTATGTGGTAA
1 ATATGTATATATAGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
* *
73297555 AGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAT
66 AGCCGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCAT
* * *
73297609 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATATAGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
73297674 AGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
66 AGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
73297707 GTGTGTATAT
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 91 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (119 bp):
ATATGTATATATAGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCAT
Found at i:73297665 original size:48 final size:48
Alignment explanation
Indices: 73297609--73297706 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
73297599 GTAAAGCCAT
*
73297609 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
*
73297657 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
73297705 AT
1 AT
73297707 GTGTGTATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
Found at i:73297897 original size:37 final size:37
Alignment explanation
Indices: 73297847--73297949 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
73297837 GGAAATATAT
73297847 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73297884 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73297921 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
73297950 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73299902 original size:30 final size:30
Alignment explanation
Indices: 73299868--73299930 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
73299858 ATTTATTTTA
73299868 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
73299898 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
73299928 TTG
1 TTG
73299931 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:73302451 original size:16 final size:18
Alignment explanation
Indices: 73302430--73302469 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
73302420 TAATTATTTT
*
73302430 AATTTAAAC-TAAAA-TA
1 AATTTAAACGAAAAATTA
73302446 AATTTAAACGAAAAATTA
1 AATTTAAACGAAAAATTA
73302464 AATTTA
1 AATTTA
73302470 TTATTATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
17 4 0.19
18 8 0.38
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (18 bp):
AATTTAAACGAAAAATTA
Found at i:73310251 original size:10 final size:10
Alignment explanation
Indices: 73310232--73310342 Score: 80
Period size: 10 Copynumber: 11.0 Consensus size: 10
73310222 GTATCTATAC
*
73310232 AAAAACAAGA
1 AAAAAAAAGA
73310242 AAAAAAAAGA
1 AAAAAAAAGA
* *
73310252 ACAAAAAAGT
1 AAAAAAAAGA
*
73310262 AAAAGAAAGAA
1 AAAAAAAAG-A
73310273 AAAAAAAAGA
1 AAAAAAAAGA
* ** *
73310283 ACAAGGAAGT
1 AAAAAAAAGA
*
73310293 AAAAGAAAG-
1 AAAAAAAAGA
*
73310302 AAAAGAAAGA
1 AAAAAAAAGA
*
73310312 AAAGAAAAGA
1 AAAAAAAAGA
*
73310322 AAGAACAAAGA
1 AA-AAAAAAGA
*
73310333 AGAAAAAAGA
1 AAAAAAAAGA
73310343 TGAAGAAAAA
Statistics
Matches: 79, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
9 9 0.11
10 55 0.70
11 15 0.19
ACGTcount: A:0.77, C:0.04, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:73310257 original size:9 final size:8
Alignment explanation
Indices: 73310243--73310354 Score: 64
Period size: 9 Copynumber: 12.1 Consensus size: 8
73310233 AAAACAAGAA
73310243 AAAAAAAG
1 AAAAAAAG
73310251 AACAAAAAAG
1 -A-AAAAAAG
73310261 TAAAAGAAAG
1 -AAAA-AAAG
73310271 AAAAAAA-
1 AAAAAAAG
73310278 AAAGAACAAGG
1 AAA-AA-AA-G
*
73310289 AAGTAAAAG
1 AA-AAAAAG
73310298 AAAGAAAAG
1 AAA-AAAAG
73310307 AAAGAAAAG
1 AAA-AAAAG
73310316 AAAAGAAAG
1 AAAA-AAAG
73310325 AACAAAGAAG
1 AA-AAA-AAG
73310335 AAAAAAGATG
1 AAAAAA-A-G
73310345 AAGAAAAAG
1 AA-AAAAAG
73310354 A
1 A
73310355 GAACTAACGT
Statistics
Matches: 86, Mismatches: 3, Indels: 28
0.74 0.03 0.24
Matches are distributed among these distances:
7 3 0.03
8 7 0.08
9 43 0.50
10 25 0.29
11 8 0.09
ACGTcount: A:0.76, C:0.03, G:0.19, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:73310279 original size:31 final size:31
Alignment explanation
Indices: 73310241--73310340 Score: 123
Period size: 31 Copynumber: 3.2 Consensus size: 31
73310231 CAAAAACAAG
*
73310241 AAAAAAAAAGAACAAAAAAGTAAAAGAAAGA
1 AAAAAAAAAGAACAAGAAAGTAAAAGAAAGA
*
73310272 AAAAAAAAAGAACAAGGAAGTAAAAGAAAGAA
1 AAAAAAAAAGAACAAGAAAGTAAAAGAAAG-A
*
73310304 AAGAAAGAAAAGAA-AAGAAAGAACAAAG-AAGA
1 AA-AAA-AAAAGAACAAGAAAGTA-AAAGAAAGA
73310336 AAAAA
1 AAAAA
73310341 GATGAAGAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
31 31 0.51
32 6 0.10
33 13 0.21
34 11 0.18
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (31 bp):
AAAAAAAAAGAACAAGAAAGTAAAAGAAAGA
Found at i:73310335 original size:14 final size:12
Alignment explanation
Indices: 73310262--73310340 Score: 56
Period size: 11 Copynumber: 6.2 Consensus size: 12
73310252 ACAAAAAAGT
73310262 AAAAGAAAGAAA
1 AAAAGAAAGAAA
73310274 AAAA-AAAGAACA
1 AAAAGAAAGAA-A
*
73310286 AGGAAGTAAAAGAAA
1 A-AAAG--AAAGAAA
73310301 GAAAAGAAAGAAAA
1 -AAAAGAAAG-AAA
73310315 GAAAAGAAAG-AA
1 -AAAAGAAAGAAA
*
73310327 CAAAG-AAGAAA
1 AAAAGAAAGAAA
73310338 AAA
1 AAA
73310341 GATGAAGAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 17
0.72 0.05 0.22
Matches are distributed among these distances:
10 3 0.05
11 14 0.25
12 8 0.15
13 6 0.11
14 13 0.24
15 4 0.07
16 7 0.13
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.01
Consensus pattern (12 bp):
AAAAGAAAGAAA
Found at i:73310551 original size:18 final size:18
Alignment explanation
Indices: 73310528--73310566 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
73310518 AGTTTAGAAC
73310528 AAAATAACAAAACTTTCT
1 AAAATAACAAAACTTTCT
73310546 AAAATAACAAAACTTTCT
1 AAAATAACAAAACTTTCT
73310564 AAA
1 AAA
73310567 GGAGAGACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATAACAAAACTTTCT
Found at i:73334047 original size:23 final size:23
Alignment explanation
Indices: 73334021--73334065 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73334011 TGGGTATGTG
*
73334021 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
73334044 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
73334066 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:73349359 original size:40 final size:40
Alignment explanation
Indices: 73349280--73349359 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
73349270 TCCATTTTTA
* *
73349280 CTTATTTATTTCATTCTTATTAGTATTATTTCTTATTATT
1 CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
* *
73349320 CTTATTTATTT-ATTTATTATT-TTACTATTTCATTCTTATT
1 CTTATTTATTTCA-TTATTATTAGTACTATTTC-TTATTATT
73349360 ATTTTATTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
39 9 0.26
40 25 0.74
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (40 bp):
CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
Found at i:73349367 original size:19 final size:20
Alignment explanation
Indices: 73349284--73349367 Score: 61
Period size: 19 Copynumber: 4.3 Consensus size: 20
73349274 TTTTTACTTA
73349284 TTTATTTCATTCTTATTAGT
1 TTTATTTCATTCTTATTAGT
* * **
73349304 ATTATTTC-TTATTATTCTT
1 TTTATTTCATTCTTATTAGT
*
73349323 ATTTATTT-A-T-TTATTATT
1 -TTTATTTCATTCTTATTAGT
73349341 TTACTATTTCATTCTTATTA-T
1 TT--TATTTCATTCTTATTAGT
73349362 TTTATT
1 TTTATT
73349368 CTGTTTTAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.04
18 7 0.14
19 18 0.35
20 14 0.27
21 4 0.08
22 6 0.12
ACGTcount: A:0.23, C:0.08, G:0.01, T:0.68
Consensus pattern (20 bp):
TTTATTTCATTCTTATTAGT
Found at i:73357576 original size:45 final size:47
Alignment explanation
Indices: 73357525--73357633 Score: 125
Period size: 49 Copynumber: 2.3 Consensus size: 47
73357515 CATATAGAAC
* * *
73357525 TACACTTCTTTTATTT-TATT-TT-AGAATAAGGTTTTTCAACCTTAT
1 TACACTTCTTCTATTTATATTATTAAG-ATAAGGTGTTTCAACCTTAA
*
73357570 TACACTTCATCTATTTGATATTGATTAAGATAAGGTGTTTCAACCTTAA
1 TACACTTCTTCTATTT-ATATT-ATTAAGATAAGGTGTTTCAACCTTAA
*
73357619 TACACTCCTTCTATT
1 TACACTTCTTCTATT
73357634 AGAATATGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
45 14 0.26
47 4 0.08
49 33 0.62
50 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.08, T:0.47
Consensus pattern (47 bp):
TACACTTCTTCTATTTATATTATTAAGATAAGGTGTTTCAACCTTAA
Found at i:73373855 original size:23 final size:22
Alignment explanation
Indices: 73373827--73373871 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
73373817 ATAAATATTT
* *
73373827 ACATATTAATAAAGTAACTCAAA
1 ACATATAAATAAA-TAAATCAAA
73373850 ACATATAAATAAATAAATCAAA
1 ACATATAAATAAATAAATCAAA
73373872 TCCAAAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.24
Consensus pattern (22 bp):
ACATATAAATAAATAAATCAAA
Found at i:73377022 original size:95 final size:95
Alignment explanation
Indices: 73376911--73377263 Score: 465
Period size: 95 Copynumber: 3.7 Consensus size: 95
73376901 ACTCTACTGT
* * * * * *
73376911 AACTTTAGGGAGATAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCCA-AGAGATAAGATT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTT-CAGGGAGATAAGATT
* * *
73376975 CGTAACTCGTAGCTTTAATATATTCCACTAC
65 TGTAACTTGTAGCTTCAATATATTCCACTAC
* *
73377006 AACTTCAGGGAAATAAGATTCGTATCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* *
73377071 GTAACTTGTAGCTTCAATCTTTTCCACTAC
66 GTAACTTGTAGCTTCAATATATTCCACTAC
* * * *
73377101 AACATCAGGGAGATAAGATTCGCATCTTCTATCTCCTCCACTGCAACTTCAGGGAGATAAGATTT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* * *
73377166 GTAACTTGTAGCTTCAATATGTTCTACTGC
66 GTAACTTGTAGCTTCAATATATTCCACTAC
* * * * *
73377196 AACTTCAGGAAAATAAGATTCGCATCTTCAATCTACTCCACTTCAACTTTAGGGAGATGAGATTT
1 AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
73377261 GTA
66 GTA
73377264 TCTTCAATCT
Statistics
Matches: 228, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 2 0.01
95 226 0.99
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (95 bp):
AACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
GTAACTTGTAGCTTCAATATATTCCACTAC
Found at i:73377023 original size:51 final size:51
Alignment explanation
Indices: 73376936--73377217 Score: 234
Period size: 51 Copynumber: 5.8 Consensus size: 51
73376926 AGATTAGTAA
* * *
73376936 CTTCAATCTGCTCCACTGCAACTTCCA-AGAGATAAGATTCGTAACTCGTAG
1 CTTCAATATGTTCCACTGCAACTT-CAGGGAGATAAGATTCGTAACTCGTAG
* * * *
73376987 CTTTAATATATTCCACTACAACTTCAGGGAAATAAGATTCGT-A----T--
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * *
73377031 CTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAG
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * * * *
73377082 CTTCAATCTTTTCCACTACAACATCAGGGAGATAAGATTCG-----C--AT
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * ** * *
73377126 CTTCTATCTCCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAG
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
* * *
73377177 CTTCAATATGTTCTACTGCAACTTCAGGAAAATAAGATTCG
1 CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCG
73377218 CATCTTCAAT
Statistics
Matches: 179, Mismatches: 37, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
44 72 0.40
45 1 0.01
46 1 0.01
49 1 0.01
50 3 0.02
51 101 0.56
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (51 bp):
CTTCAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCGTAACTCGTAG
Found at i:73377046 original size:44 final size:44
Alignment explanation
Indices: 73376896--73377299 Score: 254
Period size: 44 Copynumber: 8.7 Consensus size: 44
73376886 TTGTCGCTTT
* * * * * *
73376896 AATCTACTCTACTGTAACTTTAGGGAGATAAGATTAGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
* *
73376940 AATCTGCTCCACTGCAACTTCCA-AGAGATAAGATTCGTAACTCGTAGCTTT
1 AATCTGCTCCACTGCAACTT-CAGGGAGATAAGATTCGT-A----T--CTTC
* ** * *
73376991 AATATATTCCACTACAACTTCAGGGAAATAAGATTCGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
* *
73377035 AATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T--C--GTATCTTC
** * * *
73377086 AATCTTTTCCACTACAACATCAGGGAGATAAGATTCGCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
* * *
73377130 TATCTCCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T--C--GTATCTTC
* * * * * *
73377181 AATATGTTCTACTGCAACTTCAGGAAAATAAGATTCGCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
* * * * *
73377225 AATCTACTCCACTTCAACTTTAGGGAGATGAGATTTGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
** *
73377269 AATCTATTACC-CTGCAACTTCAGAGAGATAA
1 AATCTGCT-CCACTGCAACTTCAGGGAGATAA
73377300 AATTTGTGGC
Statistics
Matches: 277, Mismatches: 59, Indels: 48
0.72 0.15 0.12
Matches are distributed among these distances:
44 158 0.57
45 4 0.01
46 5 0.02
47 2 0.01
48 2 0.01
49 4 0.01
50 3 0.01
51 99 0.36
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTATCTTC
Found at i:73382173 original size:48 final size:50
Alignment explanation
Indices: 73382097--73382236 Score: 180
Period size: 48 Copynumber: 2.9 Consensus size: 50
73382087 TAGAGTTATA
* *
73382097 TACGATCCCATGTAAGACCATGTTTGGGACATGGAATTGGCATC-A-ATC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* *
73382145 TACGATCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* * * *
73382195 TA--ATCCCTTGTAAGACCATATCTGGGATATGGCATCGGCATC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
73382237 CTACTACGTT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
48 76 0.94
49 1 0.01
50 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (50 bp):
TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
Found at i:73389338 original size:27 final size:27
Alignment explanation
Indices: 73389308--73389366 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
73389298 CTTTCAACAG
* * * *
73389308 AGAGTAGCTCTCATAGAATACTCGATA
1 AGAGAAGCTATCAGAGAATACTCAATA
* *
73389335 AGAGAAGTTATCAGGGAATACTCAATA
1 AGAGAAGCTATCAGAGAATACTCAATA
73389362 AGAGA
1 AGAGA
73389367 CCTTTTCTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (27 bp):
AGAGAAGCTATCAGAGAATACTCAATA
Found at i:73400594 original size:11 final size:10
Alignment explanation
Indices: 73400567--73400596 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
73400557 AACTTGCATA
73400567 ATTTTTAATT
1 ATTTTTAATT
73400577 ATTTTTAATT
1 ATTTTTAATT
73400587 ATTGTTTAAT
1 ATT-TTTAAT
73400597 AGACGATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.68
11 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (10 bp):
ATTTTTAATT
Found at i:73402342 original size:47 final size:48
Alignment explanation
Indices: 73402213--73402351 Score: 208
Period size: 48 Copynumber: 2.9 Consensus size: 48
73402203 TACCATGGTT
* * *
73402213 ATACGTGTAACGTGGTACTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
73402261 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
73402309 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
73402352 GTAACGTGGT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 34 0.41
48 48 0.59
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:73402366 original size:38 final size:38
Alignment explanation
Indices: 73402315--73402391 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
73402305 ATTGATTCAT
73402315 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
73402353 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
73402391 T
1 T
73402392 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:73405262 original size:46 final size:46
Alignment explanation
Indices: 73405212--73405387 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
73405202 TGTTTGGGCA
*
73405212 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * * *
73405258 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--A--CG
* *
73405305 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * * *
73405351 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73405388 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
Found at i:73405367 original size:93 final size:93
Alignment explanation
Indices: 73405208--73405380 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
73405198 AGGATGTTTG
* * *
73405208 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACGCCCGAACTCATTGAG
73405273 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
73405301 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACGCCCGAACTCATTGAG
*
73405366 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
73405381 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73411442 original size:42 final size:42
Alignment explanation
Indices: 73411383--73411466 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
73411373 CCACAAGTAG
73411383 ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
1 ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
*
73411425 ATAATTCAGCGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
1 ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
73411467 TAACACTACT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.51, C:0.12, G:0.20, T:0.17
Consensus pattern (42 bp):
ATAATTCAACGTCAGAGTCTAAAGAAGAAAAAGAGGAAACAT
Found at i:73418764 original size:19 final size:19
Alignment explanation
Indices: 73418742--73418787 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
73418732 ATTTTTTTAT
73418742 ATTTGTTTTATGAAAAATA
1 ATTTGTTTTATGAAAAATA
* *
73418761 ATTTGGTTAATGAAAAATA
1 ATTTGTTTTATGAAAAATA
73418780 ATTT-TTTT
1 ATTTGTTTT
73418788 CCCTATAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (19 bp):
ATTTGTTTTATGAAAAATA
Found at i:73419021 original size:13 final size:13
Alignment explanation
Indices: 73418991--73419028 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
73418981 TTTTAATTTT
*
73418991 ATTTTAATAA-AA
1 ATTTAAATAATAA
73419003 AGTTTAAATAATAA
1 A-TTTAAATAATAA
73419017 ATTTAAATAATA
1 ATTTAAATAATA
73419029 TTCTTCGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 1 0.04
13 19 0.83
14 3 0.13
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
ATTTAAATAATAA
Found at i:73419301 original size:9 final size:10
Alignment explanation
Indices: 73419283--73419313 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
73419273 AATTTTTATT
73419283 TTTAAAAATA
1 TTTAAAAATA
73419293 TTT-AAAATA
1 TTTAAAAATA
73419302 TTTAAAAATA
1 TTTAAAAATA
73419312 TT
1 TT
73419314 AATATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:73419406 original size:22 final size:22
Alignment explanation
Indices: 73419381--73419426 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
73419371 TAGTCATATA
73419381 ATAAATTA-TTAATATAATTAAT
1 ATAAATTATTTAAT-TAATTAAT
* *
73419403 ATAATTTATTTAATTATTTAAT
1 ATAAATTATTTAATTAATTAAT
73419425 AT
1 AT
73419427 TTTAATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATAAATTATTTAATTAATTAAT
Found at i:73419516 original size:15 final size:15
Alignment explanation
Indices: 73419496--73419552 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
73419486 ATTCAATATT
73419496 AATATTTTAATAATA
1 AATATTTTAATAATA
*
73419511 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
73419530 AATATATTAATAATA
1 AATATTTTAATAATA
*
73419545 AATGTTTT
1 AATATTTT
73419553 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:73421903 original size:19 final size:19
Alignment explanation
Indices: 73421876--73421941 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
73421866 TATATATACT
73421876 AAAAA-AATATAAAAATAA
1 AAAAATAATATAAAAATAA
* * *
73421894 CAATATAATATAAACATAA
1 AAAAATAATATAAAAATAA
*
73421913 AAAAATAA-AAAAAAATAA
1 AAAAATAATATAAAAATAA
*
73421931 AAAAAAAATAT
1 AAAAATAATAT
73421942 TTTTTTTACC
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 18 0.49
19 19 0.51
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (19 bp):
AAAAATAATATAAAAATAA
Found at i:73421925 original size:11 final size:11
Alignment explanation
Indices: 73421911--73421940 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
73421901 ATATAAACAT
73421911 AAAAAAAT-AA
1 AAAAAAATAAA
73421921 AAAAAAATAAA
1 AAAAAAATAAA
73421932 AAAAAAATA
1 AAAAAAATA
73421941 TTTTTTTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:73421934 original size:8 final size:8
Alignment explanation
Indices: 73421875--73421938 Score: 51
Period size: 8 Copynumber: 7.8 Consensus size: 8
73421865 ATATATATAC
73421875 TAAAAAAA
1 TAAAAAAA
*
73421883 TATAAAAA
1 TAAAAAAA
73421891 TAACAATATAA
1 TAA-AA-A-AA
* *
73421902 TATAAACA
1 TAAAAAAA
73421910 TAAAAAAA
1 TAAAAAAA
73421918 TAAAAAAA
1 TAAAAAAA
73421926 -AATAAAAA
1 TAA-AAAAA
73421934 -AAAAA
1 TAAAAA
73421939 TATTTTTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
7 5 0.11
8 31 0.67
9 3 0.07
10 3 0.07
11 4 0.09
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (8 bp):
TAAAAAAA
Found at i:73421936 original size:10 final size:10
Alignment explanation
Indices: 73421911--73421937 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
73421901 ATATAAACAT
73421911 AAAAAAATAA
1 AAAAAAATAA
73421921 AAAAAAATAA
1 AAAAAAATAA
73421931 AAAAAAA
1 AAAAAAA
73421938 ATATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:73422061 original size:11 final size:11
Alignment explanation
Indices: 73422047--73422081 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
73422037 TTCCTTCCCC
73422047 CTCCCTTCTCT
1 CTCCCTTCTCT
73422058 CTCCCTTCTCT
1 CTCCCTTCTCT
73422069 CTTCCC-TCTCT
1 C-TCCCTTCTCT
73422080 CT
1 CT
73422082 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:73422571 original size:9 final size:9
Alignment explanation
Indices: 73422557--73422599 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
73422547 GTTATTTTTA
73422557 TATTATTAG
1 TATTATTAG
73422566 TATTATTAG
1 TATTATTAG
* *
73422575 TATTAGTAT
1 TATTATTAG
73422584 TATTATTATG
1 TATTATTA-G
73422594 TATTAT
1 TATTAT
73422600 GTACGTGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 23 0.79
10 6 0.21
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (9 bp):
TATTATTAG
Found at i:73422572 original size:3 final size:3
Alignment explanation
Indices: 73422548--73422599 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
73422538 AATATCCTTG
* * * *
73422548 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA GTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
73422596 TTA T
1 TTA T
73422600 GTACGTGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:73422580 original size:15 final size:15
Alignment explanation
Indices: 73422560--73422588 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73422550 ATTTTTATAT
73422560 TATTAGTATTATTAG
1 TATTAGTATTATTAG
73422575 TATTAGTATTATTA
1 TATTAGTATTATTA
73422589 TTATGTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
TATTAGTATTATTAG
Found at i:73423002 original size:64 final size:64
Alignment explanation
Indices: 73422928--73423059 Score: 164
Period size: 64 Copynumber: 2.1 Consensus size: 64
73422918 GTCGTATTAT
*
73422928 TATATTTTAATATTA-TA-TTATATAATTATA-TA-TACATATATCTTTTATATATATTATCATT
1 TATATTTTAATATTATTAGTTATAT-ATTACACTATTACATATAT-TTTTATA-ATATTAT-ATT
73422989 GTA
62 GTA
* * *
73422992 TATATTTTAATATTATTAGTTATATTTTACACTATTATATATATTTTTCTAATATTATATTGTA
1 TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
73423056 TATA
1 TATA
73423060 CTGTTGTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
64 25 0.42
65 13 0.22
66 14 0.23
67 8 0.13
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (64 bp):
TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
Found at i:73423034 original size:19 final size:18
Alignment explanation
Indices: 73422990--73423049 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 18
73422980 ATTATCATTG
73422990 TATATATTTTAATATTAT
1 TATATATTTTAATATTAT
73423008 TAGTTATATTTTACACTATTAT
1 TA--TATATTTTA-A-TATTAT
*
73423030 ATATATTTTTCTAATATTAT
1 -TATATATTT-TAATATTAT
73423050 ATTGTATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.06
20 15 0.43
21 8 0.23
22 8 0.23
23 2 0.06
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATATATTTTAATATTAT
Found at i:73423492 original size:38 final size:37
Alignment explanation
Indices: 73423408--73423502 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
73423398 TATACGTACT
*
73423408 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
73423446 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
73423482 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
73423503 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:73431631 original size:21 final size:21
Alignment explanation
Indices: 73431605--73431648 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
73431595 TATCTGCCAA
73431605 TATAAATTCTATACCCATACT
1 TATAAATTCTATACCCATACT
*
73431626 TATAAATTCTATACCCATGCT
1 TATAAATTCTATACCCATACT
73431647 TA
1 TA
73431649 ATGGGACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (21 bp):
TATAAATTCTATACCCATACT
Found at i:73433404 original size:7 final size:7
Alignment explanation
Indices: 73433392--73433433 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
73433382 TGAATGGTGT
73433392 AGATGAA
1 AGATGAA
73433399 AGATGAA
1 AGATGAA
73433406 AGATGAA
1 AGATGAA
73433413 AGATGAA
1 AGATGAA
73433420 AGATGAA
1 AGATGAA
73433427 AGATGAA
1 AGATGAA
73433434 TCTTAAGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14
Consensus pattern (7 bp):
AGATGAA
Found at i:73450272 original size:13 final size:13
Alignment explanation
Indices: 73450254--73450279 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73450244 AAGATTGAAA
73450254 CATTAAATTTATT
1 CATTAAATTTATT
73450267 CATTAAATTTATT
1 CATTAAATTTATT
73450280 AGAAAATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
CATTAAATTTATT
Done.