Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 220 of 320
Found at i:73450815 original size:20 final size:20
Alignment explanation
Indices: 73450792--73450832 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
73450782 TATAACTGAG
73450792 AGAGAAATTTTTAGTTTCGA
1 AGAGAAATTTTTAGTTTCGA
73450812 AGAGAAATTTTTAGTTTCGA
1 AGAGAAATTTTTAGTTTCGA
73450832 A
1 A
73450833 CCCAAGTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.39
Consensus pattern (20 bp):
AGAGAAATTTTTAGTTTCGA
Found at i:73453402 original size:18 final size:18
Alignment explanation
Indices: 73453366--73453404 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
73453356 CCCGATAAAC
* *
73453366 TTTATATCCTTCTGAGAT
1 TTTAAATCCTTCAGAGAT
*
73453384 TTTAAATCCTTCAGGGAT
1 TTTAAATCCTTCAGAGAT
73453402 TTT
1 TTT
73453405 CATATAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (18 bp):
TTTAAATCCTTCAGAGAT
Found at i:73456411 original size:3 final size:3
Alignment explanation
Indices: 73456405--73456568 Score: 74
Period size: 3 Copynumber: 54.7 Consensus size: 3
73456395 TTTTTTTACA
* *
73456405 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * * *
73456449 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
73456494 CA- TAT TAAT TAT T-T TCT AACG TAT TAT TAT TACT AAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
*
73456540 T-T CTAGT T-T TAT TAT TAT TAT TAA TAT TA
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TA
73456569 GTGTATGTAT
Statistics
Matches: 119, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 12 0.10
3 95 0.80
4 11 0.09
5 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:73456433 original size:23 final size:23
Alignment explanation
Indices: 73456407--73456452 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
73456397 TTTTTACATA
73456407 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
73456430 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
73456453 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:73456592 original size:17 final size:16
Alignment explanation
Indices: 73456570--73456601 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
73456560 TTAATATTAG
73456570 TGTATGTATATTATATA
1 TGTATGTATA-TATATA
73456587 TGTATGTATATATAT
1 TGTATGTATATATAT
73456602 TTATATATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (16 bp):
TGTATGTATATATATA
Found at i:73456875 original size:23 final size:22
Alignment explanation
Indices: 73456800--73456898 Score: 87
Period size: 23 Copynumber: 4.5 Consensus size: 22
73456790 ATGTTTTCAA
*
73456800 TATTATAT-TTTTT-ATA-TGT
1 TATTATATATTTTTAATACTAT
*
73456819 TATTATATATATTTTAATATTAT
1 TATTATATAT-TTTTAATACTAT
* *
73456842 TAGTTACATATTTTTTATACTAT
1 TA-TTATATATTTTTAATACTAT
* *
73456865 TATATGTATATTTCTAATACTAT
1 TAT-TATATATTTTTAATACTAT
73456888 TATTTATATAT
1 TA-TTATATAT
73456899 ATATGTGTGT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
19 8 0.12
20 1 0.02
21 4 0.06
22 4 0.06
23 39 0.61
24 8 0.12
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (22 bp):
TATTATATATTTTTAATACTAT
Found at i:73456889 original size:46 final size:45
Alignment explanation
Indices: 73456804--73456898 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
73456794 TTTCAATATT
* *
73456804 ATATTTTTTATATGTTATTATATATATTTTAATATTATTAGTTAC
1 ATATTTTTTATATATTATTATATATATTTTAATACTATTAGTTAC
* * *
73456849 ATATTTTTTATACTATTA-TATGTATATTTCTAATACTATTATTTAT
1 ATATTTTTTATA-TATTATTATATATATTT-TAATACTATTAGTTAC
73456895 ATAT
1 ATAT
73456899 ATATGTGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
45 22 0.51
46 21 0.49
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (45 bp):
ATATTTTTTATATATTATTATATATATTTTAATACTATTAGTTAC
Found at i:73457125 original size:29 final size:27
Alignment explanation
Indices: 73457072--73457130 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
73457062 CCATCTTATG
*
73457072 TATATATTTTAAATACTATATTGTATA
1 TATATATTTTAAATACCATATTGTATA
*
73457099 TATATATTCTT-AATACCATATTGTGTA
1 TATATATT-TTAAATACCATATTGTATA
73457126 TATAT
1 TATAT
73457131 CATTATTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (27 bp):
TATATATTTTAAATACCATATTGTATA
Found at i:73458596 original size:22 final size:22
Alignment explanation
Indices: 73458568--73458621 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
73458558 CCACCAACCA
73458568 CTACACTCCACCCGTACCAGCC
1 CTACACTCCACCCGTACCAGCC
73458590 CTACACTCCACCCGTACCAGCC
1 CTACACTCCACCCGTACCAGCC
73458612 CTACACTCCA
1 CTACACTCCA
73458622 TGTGGAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.54, G:0.07, T:0.15
Consensus pattern (22 bp):
CTACACTCCACCCGTACCAGCC
Found at i:73460386 original size:26 final size:26
Alignment explanation
Indices: 73460352--73460459 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
73460342 TGAAATGCCC
*
73460352 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73460378 ATCACGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73460404 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
73460430 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73460456 ATCA
1 ATCA
73460460 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73478625 original size:21 final size:21
Alignment explanation
Indices: 73478600--73478668 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
73478590 TATAATGATT
73478600 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
73478621 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
73478641 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
73478661 ATTATTAT
1 ATTATTAT
73478669 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:73478681 original size:15 final size:14
Alignment explanation
Indices: 73478655--73478685 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
73478645 TATGGTTTTA
73478655 TATTAGATTATTAT
1 TATTAGATTATTAT
73478669 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
73478684 TA
1 TA
73478686 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:73479024 original size:14 final size:14
Alignment explanation
Indices: 73479000--73479032 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
73478990 AAGAATTAAG
73479000 GAAACAAAGAAACA
1 GAAACAAAGAAACA
73479014 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
73479028 GAAAC
1 GAAAC
73479033 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:73481939 original size:22 final size:23
Alignment explanation
Indices: 73481903--73481961 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
73481893 TTTGAATCCA
* *
73481903 TCTATTTTCACTTTAGTTGTT-TT
1 TCTATTTCCATTTTA-TTGTTATT
* *
73481926 TCTTTTTCC-TTTTATTTTTATT
1 TCTATTTCCATTTTATTGTTATT
73481948 TCTATTTCCATTTT
1 TCTATTTCCATTTT
73481962 TTTATGTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
21 4 0.14
22 14 0.48
23 11 0.38
ACGTcount: A:0.12, C:0.15, G:0.03, T:0.69
Consensus pattern (23 bp):
TCTATTTCCATTTTATTGTTATT
Found at i:73488294 original size:57 final size:57
Alignment explanation
Indices: 73488233--73488342 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
73488223 ATCTTGTTTC
* *
73488233 TAACATATGCTCATAAGA-GCTTA-ATCAGGATTACCCGTCCGGGCTAAATCCTATCTA
1 TAACATATGCT--TAAGAGGCTTATATCAGGATTACCAGTCCAGGCTAAATCCTATCTA
*
73488290 TAACATATGCTTAAGAGGGCTTATATCAGGATTACTAGTCCAGGCTAAATCCT
1 TAACATATGCTTAAGA-GGCTTATATCAGGATTACCAGTCCAGGCTAAATCCT
73488343 TTATGTAATG
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
55 5 0.11
57 16 0.34
58 26 0.55
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (57 bp):
TAACATATGCTTAAGAGGCTTATATCAGGATTACCAGTCCAGGCTAAATCCTATCTA
Found at i:73488339 original size:58 final size:57
Alignment explanation
Indices: 73488196--73488342 Score: 154
Period size: 57 Copynumber: 2.6 Consensus size: 57
73488186 CCACAGATTA
* * * * * * * *
73488196 TATAACAGGATTATTTGTCCAAGCTAAATCTTGTTTCTAACATATGCTCATAAGAGCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCCTATCTATAACATATGCT-ATAAGAGCT
** *
73488254 TA-ATCAGGATTACCCGTCCGGGCTAAATCCTATCTATAACATATGCT-TAAGAGGGCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCCTATCTATAACATATGCTATAAGA--GCT
73488311 TATATCAGGATTACTAGTCCAGGCTAAATCCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCCT
73488343 TTATGTAATG
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
55 5 0.07
57 40 0.55
58 28 0.38
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (57 bp):
TATATCAGGATTACTAGTCCAGGCTAAATCCTATCTATAACATATGCTATAAGAGCT
Found at i:73490456 original size:52 final size:51
Alignment explanation
Indices: 73490378--73490578 Score: 201
Period size: 52 Copynumber: 3.8 Consensus size: 51
73490368 AAGGAATAGA
* * *
73490378 TGTGATATGTGTGCCTGTATAAGACCATAGTTGGGCTATGGCATTAGTGCAT
1 TGTGATATGTG-CCCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
* *
73490430 TGTGATATGTGCACCCGTATAAGACCATAGCTAGGCTATGGCATCAGTGCAT
1 TGTGATATGTGC-CCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
** * * *
73490482 TGTGATATGTATTCCCATATAAGACCATGGCTGGGCTATAGCATCGGTA-TG-A-
1 TGTGATATGT-GCCCCGTATAAGACCATAGCTGGGCTATGGCAT---TAGTGCAT
* *
73490534 TGTGATAATGTGCCTCCGTATAAGACCATATCTGGGATATGGCAT
1 TGTGAT-ATGTGCC-CCGTATAAGACCATAGCTGGGCTATGGCAT
73490579 CGGTATGATA
Statistics
Matches: 123, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
52 90 0.73
53 30 0.24
54 2 0.02
55 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGATATGTGCCCCGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAT
Found at i:73490621 original size:46 final size:51
Alignment explanation
Indices: 73490394--73490622 Score: 147
Period size: 52 Copynumber: 4.5 Consensus size: 51
73490384 ATGTGTGCCT
* * * * *
73490394 GTATAAGACCATAGTTGGGCTATGGCATTAGTGCAT-TGTGAT-ATGTGCACCC
1 GTATAAGACCATGGCTGGGCTATGGCA-TCG-G-ATGAGTGATAATGTGCATCC
* * *
73490446 GTATAAGACCATAGCTAGGCTATGGCATCAGTGCAT-TGTGAT-ATGT--ATTCCC
1 GTATAAGACCATGGCTGGGCTATGGCATC-G-G-ATGAGTGATAATGTGCA-T-CC
* * *
73490498 ATATAAGACCATGGCTGGGCTATAGCATCGGTATGATGTGATAATGTGCCTCC
1 GTATAAGACCATGGCTGGGCTATGGCATCGG-ATGA-GTGATAATGTGCATCC
** *
73490551 GTATAAGACCATATCTGGGATATGGCATCGG-T-A-TGAT-ATGTG-ATCC
1 GTATAAGACCATGGCTGGGCTATGGCATCGGATGAGTGATAATGTGCATCC
* *
73490597 GTGTAAGACCATGGCAGGGCTATGGC
1 GTATAAGACCATGGCTGGGCTATGGC
73490623 TTTAGTGTGT
Statistics
Matches: 147, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
46 24 0.16
47 5 0.03
48 4 0.03
50 5 0.03
51 3 0.02
52 73 0.50
53 32 0.22
54 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (51 bp):
GTATAAGACCATGGCTGGGCTATGGCATCGGATGAGTGATAATGTGCATCC
Found at i:73494358 original size:40 final size:40
Alignment explanation
Indices: 73494303--73494384 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
73494293 TTCTATTGAG
* *
73494303 AAGAATAACTTATTAGATTTAGGCAACCAATTGACGATGT
1 AAGAATAACTTATTAGATTTAGACAACCAATTGACAATGT
*
73494343 AAGAATAACTTATTAGATTTAGACGACCAATTGACAATGT
1 AAGAATAACTTATTAGATTTAGACAACCAATTGACAATGT
73494383 AA
1 AA
73494385 CACCTCTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (40 bp):
AAGAATAACTTATTAGATTTAGACAACCAATTGACAATGT
Found at i:73496924 original size:21 final size:21
Alignment explanation
Indices: 73496900--73496940 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
73496890 CATGCTCATG
73496900 TGAGGGAGGCACACGCCCGTA
1 TGAGGGAGGCACACGCCCGTA
*
73496921 TGAGGGAGGCACACGGCCGT
1 TGAGGGAGGCACACGCCCGT
73496941 GTGTAGATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.27, G:0.41, T:0.10
Consensus pattern (21 bp):
TGAGGGAGGCACACGCCCGTA
Found at i:73505432 original size:94 final size:93
Alignment explanation
Indices: 73505267--73505492 Score: 278
Period size: 94 Copynumber: 2.4 Consensus size: 93
73505257 AGTTCTCCAA
* * * *
73505267 GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTCGGCTATGAAAACATGTGGAGTCTGGC
1 GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTCGACTATGAAAACATGTAGAATCTGGA
73505332 GGGATAGTAAACACGA-GGTAGTTTACCAG
66 GGGATAGTAAACA-GAGGGTAG-TTACCAG
* **
73505361 GACATTAAACATGGGGTTACTTGTGTAACG-CCTTA-TCTCGACTATGGTAACATGTAGAATCTG
1 GACATTAAACATGGGGTTACATGTGTAA-GACCTTAGT-TCGACTATGAAAACATGTAGAATCTG
* * * * *
73505424 TAGTGATAGTAAACATAGGGTAGTTGCCAT
64 GAGGGATAGTAAACAGAGGGTAGTTACCAG
*
73505454 GACATTAAACATGGGGTTACATGTGTAAGACCATAGTTC
1 GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTC
73505493 AGTTATAACA
Statistics
Matches: 113, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
92 1 0.01
93 40 0.35
94 71 0.63
95 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (93 bp):
GACATTAAACATGGGGTTACATGTGTAAGACCTTAGTTCGACTATGAAAACATGTAGAATCTGGA
GGGATAGTAAACAGAGGGTAGTTACCAG
Found at i:73513640 original size:365 final size:365
Alignment explanation
Indices: 73513162--73514256 Score: 2165
Period size: 365 Copynumber: 3.0 Consensus size: 365
73513152 TAATAAACTT
73513162 AAAACTTCCCACTCTAATGATTCTTACC-TTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
1 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
*
73513226 GACATCTTAAGTTCACTTAAAGAAATCAATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
66 GACATCTTAAGTTCACTTAAAGAAATCTATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
73513291 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
131 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
73513356 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
196 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
73513421 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
261 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
73513486 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
326 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
73513526 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
1 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
73513591 GACATCTTAAGTTCACTTAAAGAAATCTATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
66 GACATCTTAAGTTCACTTAAAGAAATCTATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
73513656 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
131 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
73513721 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
196 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
73513786 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
261 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
73513851 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
326 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
73513891 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
1 AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
73513956 GACATCTTAAGTTCACTTAAAGAAATCTATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
66 GACATCTTAAGTTCACTTAAAGAAATCTATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
73514021 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
131 GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
*
73514086 GTGTATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
196 GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
73514151 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
261 GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
73514216 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
326 AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
73514256 A
1 A
73514257 TAAAGACATT
Statistics
Matches: 728, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
364 28 0.04
365 700 0.96
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (365 bp):
AAAACTTCCCACTCTAATGATTCTTACCTTTGGCATTTGAAAGAATCACTAGACTTGTGAAAGAC
GACATCTTAAGTTCACTTAAAGAAATCTATCTTCCACAATGTGAATCTTGCTTGGAAGGTAAGAT
GACCAAACAATATTTTAATGGAAAATGAACGAGGGCAATAAAACTCCTAGAACTTGTGCACACTG
GTGCATGTGGCCCTATAAGCGTCAGTGCAAGAGGTGGTTACGAATATTATGTAACTTTTATTGAT
GATTATTCCAGATATGGGTATGTATACCTTATGCCCCACAAGAGTGAAACCTTTGATAAATTCAA
AGATTTTCATGTAGAAGTGGAGAAATAACTAGGTTTAACC
Found at i:73522068 original size:26 final size:26
Alignment explanation
Indices: 73522006--73522078 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 26
73521996 TTTTAATATC
73522006 ATAT-TTTTATAC-ATTGTTATGTAT
1 ATATCTTTTATACTATTGTTATGTAT
73522030 ATA-C-TTTA-A-TATTGTTA-GTTAT
1 ATATCTTTTATACTATTGTTATG-TAT
*
73522052 ATATCTTTTATACTATTG-TACGTAT
1 ATATCTTTTATACTATTGTTATGTAT
73522077 AT
1 AT
73522079 TTCTGATACT
Statistics
Matches: 41, Mismatches: 0, Indels: 15
0.73 0.00 0.27
Matches are distributed among these distances:
21 1 0.02
22 14 0.34
23 5 0.12
24 7 0.17
25 8 0.20
26 6 0.15
ACGTcount: A:0.30, C:0.07, G:0.08, T:0.55
Consensus pattern (26 bp):
ATATCTTTTATACTATTGTTATGTAT
Found at i:73526088 original size:21 final size:21
Alignment explanation
Indices: 73526064--73526117 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
73526054 GTGAGGGTCT
73526064 ACACGCCCATGTAAAGGCCAC
1 ACACGCCCATGTAAAGGCCAC
* *
73526085 ACACGCCTATGTAAAGGCTAC
1 ACACGCCCATGTAAAGGCCAC
73526106 ACACGCCCATGT
1 ACACGCCCATGT
73526118 GGAGGGGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.35, G:0.19, T:0.15
Consensus pattern (21 bp):
ACACGCCCATGTAAAGGCCAC
Found at i:73527634 original size:31 final size:31
Alignment explanation
Indices: 73527596--73527654 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
73527586 CAAGTTGACA
* *
73527596 TTATATC-AGAGTTGCTTACACAAGCTAAAAT
1 TTATATCAAG-GTTACTCACACAAGCTAAAAT
73527627 TTATATCAAGGTTACTCACACAAGCTAA
1 TTATATCAAGGTTACTCACACAAGCTAA
73527655 CTTATATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (31 bp):
TTATATCAAGGTTACTCACACAAGCTAAAAT
Found at i:73528429 original size:45 final size:45
Alignment explanation
Indices: 73528341--73528428 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
73528331 AATTTAATTT
* *
73528341 AATTGTTTTATTTTTTATTTTGAAGCAAATAAGATTTTATTTTTA
1 AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTATATTTTTA
73528386 AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTA-ATTTTT
1 AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTATATTTTT
73528429 TTGAGTTTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 6 0.15
45 35 0.85
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (45 bp):
AATTATTTTATTTTTTATTTTGAAGCAAATAAGATTATATTTTTA
Found at i:73535330 original size:14 final size:14
Alignment explanation
Indices: 73535311--73535338 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73535301 TTAGTGTTAG
73535311 TTTAATTGATATGA
1 TTTAATTGATATGA
73535325 TTTAATTGATATGA
1 TTTAATTGATATGA
73535339 ATATTGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
TTTAATTGATATGA
Found at i:73547983 original size:31 final size:32
Alignment explanation
Indices: 73547929--73548000 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 32
73547919 AAAGATGAAA
73547929 TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
1 TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
* * * *
73547961 TTCCAAATT-AGGAAAAATTGTCAAGTTTATG
1 TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
73547992 TACCAAATT
1 TACCAAATT
73548001 GGACCAGCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
31 27 0.77
32 8 0.23
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (32 bp):
TACCAAATTAAGAAAAAAGTGTCAAGTTTAAG
Found at i:73548379 original size:44 final size:44
Alignment explanation
Indices: 73548325--73548435 Score: 116
Period size: 45 Copynumber: 2.5 Consensus size: 44
73548315 TTAGTCTGTT
* *
73548325 CCACTACAACTTCAAGGAGATAGGACTCG-TAACTTCAACCTACC
1 CCACTGCAACTTCAGGGAGATAGG-CTCGCTAACTTCAACCTACC
* * * * * * *
73548369 CCACTGCAACTTCAGGGGGATAAGGTTTGCTATCTTCGATCTACT
1 CCACTGCAACTTCAGGGAGAT-AGGCTCGCTAACTTCAACCTACC
73548414 CCACTGCAACTTCAGGGAGATA
1 CCACTGCAACTTCAGGGAGATA
73548436 AGATCTATAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 21 0.38
45 34 0.62
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAGGCTCGCTAACTTCAACCTACC
Found at i:73548447 original size:89 final size:89
Alignment explanation
Indices: 73548287--73548475 Score: 202
Period size: 89 Copynumber: 2.1 Consensus size: 89
73548277 ATTCCATTGT
* * ** *
73548287 AACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGTTCCACTACAACTTCAAGGAGATAGGACT
1 AACTTCAGGGGAATAAGATTTGCTATCTTGAGTCTACTCCACTACAACTTCAAGGAGATAAGACT
* *
73548352 CGTAACTTCAACCTACCCCACTGC
66 CATAACTTCAACCTACCCCACAGC
* * * *
73548376 AACTTCAGGGGGATAAGGTTTGCTATCTTCGA-TCTACTCCACTGCAACTTCAGGGAGATAAGA-
1 AACTTCAGGGGAATAAGATTTGCTATCTT-GAGTCTACTCCACTACAACTTCAAGGAGATAAGAC
* * * *
73548439 TCTATAACTTTAATCTACTCCTCAGC
65 TC-ATAACTTCAACCTACCCCACAGC
*
73548465 AACTTTAGGGG
1 AACTTCAGGGG
73548476 TTTCAATCCG
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
88 2 0.02
89 79 0.96
90 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (89 bp):
AACTTCAGGGGAATAAGATTTGCTATCTTGAGTCTACTCCACTACAACTTCAAGGAGATAAGACT
CATAACTTCAACCTACCCCACAGC
Found at i:73554839 original size:24 final size:24
Alignment explanation
Indices: 73554793--73554846 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
73554783 ATGTTTTTTC
73554793 ATATA-GTTGTTTAAATTATTTAT
1 ATATATGTTGTTTAAATTATTTAT
* *
73554816 ATATATGTTTTTTAAATCTATTATGT
1 ATATATGTTGTTTAAAT-TATT-TAT
73554842 ATATA
1 ATATA
73554847 ACTTATTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 5 0.19
24 10 0.38
25 4 0.15
26 7 0.27
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (24 bp):
ATATATGTTGTTTAAATTATTTAT
Found at i:73555736 original size:128 final size:127
Alignment explanation
Indices: 73555492--73555828 Score: 449
Period size: 128 Copynumber: 2.6 Consensus size: 127
73555482 TACTCGTTTG
** *
73555492 AAAATTCCTTAAAACAAAGGCAATGTTTGATGTTTGAAAATTCGGGGAATCGTGCCCTATCGTGC
1 AAAATT-C-TAAAAC-AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGC
* * *
73555557 TGGGTTTCGATTTCCCGTTTGTTCAAAGTAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTT
63 TGGGTTTCGATTTTCGGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTG-TTTT
*
73555622 T
127 A
* * * * *
73555623 CAAATTCTAAAATAAGGCAATGTTCAACGTTTGGAAATTCGGGGAATCGTGCCCTATCGTACTAG
1 AAAATTCTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGG
* *
73555688 GTTTCGATTTTCGGTTTGTTCAAAATAATTGAATATTCCTTTAGAATTTCCCTCGTGTTTTA
66 GTTTCGATTTTCGGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTA
* * * * *
73555750 AAAATTCTAAAGCAAGGCAATGTCCAATGTTTGGAAATTCGAGGAATTGTGCCCTACCGTGCTGG
1 AAAATTCTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGG
*
73555815 GTTTCAGTTTTTCG
66 GTTTC-GATTTTCG
73555829 TTAGACTAAA
Statistics
Matches: 180, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
127 64 0.36
128 105 0.58
129 5 0.03
130 1 0.01
131 5 0.03
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (127 bp):
AAAATTCTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGG
GTTTCGATTTTCGGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTA
Found at i:73567238 original size:45 final size:45
Alignment explanation
Indices: 73567180--73567521 Score: 197
Period size: 45 Copynumber: 7.6 Consensus size: 45
73567170 AGCAAGTCTC
* *
73567180 ATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACAGATCTT
* * * * ***
73567225 ATCTCCCTAAAGTTTCAGTGTAGCAGA-TCGAAG-CCCCA-ATCCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAGATAACAGAT-CTT
** ** * *
73567269 ATCTTTCTGAAGTTGCAGTAAAGTAGGA-TAAA-ATTACCCA-ATTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCA-GACTAAAGA-TA-ACAGA-TCTT
* * *
73567315 ATCTCCCTGAAGTTGCAATGGAACAGACTAAAGTTAGA-AGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA-ACAGATCTT
* *
73567360 ATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACAGATCTT
* * *
73567405 ATCTCCCTAAAGTTGCAGTGGAGCCA-A-TCGAAG-TCACA-ATCCTT
1 ATCTCCCTGAAGTTGCAGTGGAG-CAGACT-AAAGATAACAGAT-CTT
** ** * *
73567449 ATCTTTCTGAAGTTGCAGTAAAGCAGGA-TAAA-AAATACACGAACTGT
1 ATCTCCCTGAAGTTGCAGTGGAGCA-GACTAAAGATA-ACA-GATCT-T
*
73567496 ATCTCCCTAAAGTTGCAGTGGAGCAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAG
73567522 TTGCAGTAAA
Statistics
Matches: 225, Mismatches: 51, Indels: 41
0.71 0.16 0.13
Matches are distributed among these distances:
43 6 0.03
44 53 0.24
45 106 0.47
46 37 0.16
47 23 0.10
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACAGATCTT
Found at i:73567373 original size:135 final size:133
Alignment explanation
Indices: 73567132--73567386 Score: 323
Period size: 135 Copynumber: 1.9 Consensus size: 133
73567122 TCATAGCAAA
** * *
73567132 CCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTTGAAGTAGCAAGTCTCATCTCCCTGAAGTTGTA
1 CCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTAAAAGTACCAAGTCTCATCTCCCTGAAGTTGCA
* * * * *
73567197 GTGGAGCAGACTGAAGATAACAGATCTTATCTCCCTAAAGTTTCAGTGTAGCAGATCGAAGCCCC
66 ATGGAACAGACTAAAGATAACAGATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGCCCC
73567262 AAT
131 AAT
* * * * *
73567265 CCTTATCTTTCTGAAGTTGCAGTAAAGTAGGATAAAATTACCCAATTCTTATCTCCCTGAAGTTG
1 CCTTATCTCTCTAAAGTTGCAGTAAAGTAGG-TAAAAGTA-CCAAGTCTCATCTCCCTGAAGTTG
* * *
73567330 CAATGGAACAGACTAAAGTTAGA-AGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGA
64 CAATGGAACAGACTAAAGATA-ACAGATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
73567387 CTAAAGATAG
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
133 29 0.28
134 5 0.05
135 67 0.66
136 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (133 bp):
CCTTATCTCTCTAAAGTTGCAGTAAAGTAGGTAAAAGTACCAAGTCTCATCTCCCTGAAGTTGCA
ATGGAACAGACTAAAGATAACAGATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGCCCC
AAT
Found at i:73569357 original size:24 final size:26
Alignment explanation
Indices: 73569321--73569375 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
73569311 ATGTTTTTTC
73569321 ATATAGTTGTTTTAAAT-TATT-TAT
1 ATATAGTTGTTTTAAATCTATTATAT
*
73569345 ATATATGTT-TTTTAAATCTATTATGT
1 ATATA-GTTGTTTTAAATCTATTATAT
73569371 ATATA
1 ATATA
73569376 ACTTATTTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 13 0.48
25 7 0.26
26 7 0.26
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (26 bp):
ATATAGTTGTTTTAAATCTATTATAT
Found at i:73571107 original size:31 final size:31
Alignment explanation
Indices: 73571069--73571133 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
73571059 ATTTTTCGAG
73571069 TTTAATATTTCTATCCAAATTTTAGATCAAC
1 TTTAATATTTCTATCCAAATTTTAGATCAAC
73571100 TTTAATATTTCTATCCAAATTTTAGATCAAC
1 TTTAATATTTCTATCCAAATTTTAGATCAAC
73571131 TTT
1 TTT
73571134 TAAATTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTAATATTTCTATCCAAATTTTAGATCAAC
Found at i:73573933 original size:56 final size:56
Alignment explanation
Indices: 73573837--73573948 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
73573827 AGATTGCCAG
* **
73573837 TTATTTCCTATGATTAACAGCTCCGATCATTGTTTCTGGCTGCTTCCTTTAGTTCT
1 TTATTTCCTATGATTAACAGCTCCAATCATCATTTCTGGCTGCTTCCTTTAGTTCT
* * * *
73573893 TTATTTCCTCTGATTGACAGCTCCAATCATCATTTTTGGCTGCTTCCTTTGGTTCT
1 TTATTTCCTATGATTAACAGCTCCAATCATCATTTCTGGCTGCTTCCTTTAGTTCT
73573949 GTGCGTTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.15, C:0.24, G:0.14, T:0.46
Consensus pattern (56 bp):
TTATTTCCTATGATTAACAGCTCCAATCATCATTTCTGGCTGCTTCCTTTAGTTCT
Found at i:73577061 original size:11 final size:12
Alignment explanation
Indices: 73577012--73577067 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 12
73577002 TTTTCTTAGG
*
73577012 TATA-TATATTT
1 TATATTATATTA
73577023 TATATTATTATTA
1 TATATTA-TATTA
73577036 -ATTGATTATATTA
1 TA-T-ATTATATTA
73577049 TA-ATTATATTA
1 TATATTATATTA
73577060 TATATTAT
1 TATATTAT
73577068 GAAACAAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
11 15 0.39
12 8 0.21
13 10 0.26
14 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (12 bp):
TATATTATATTA
Found at i:73577129 original size:17 final size:18
Alignment explanation
Indices: 73577102--73577135 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73577092 GTATGATAAT
73577102 AAAAATATATATGTGTAA
1 AAAAATATATATGTGTAA
*
73577120 AAAAAT-TATATTTGTA
1 AAAAATATATATGTGTA
73577136 CAATTGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (18 bp):
AAAAATATATATGTGTAA
Found at i:73577347 original size:19 final size:22
Alignment explanation
Indices: 73577325--73577367 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
73577315 ATTAAATAGA
73577325 TATTT-ATT-ATATT-TATTAT
1 TATTTAATTGATATTATATTAT
73577344 TATTTAATTGATATTATATTAT
1 TATTTAATTGATATTATATTAT
73577366 TA
1 TA
73577368 AATTAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 3 0.14
21 5 0.24
22 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTTAATTGATATTATATTAT
Found at i:73578110 original size:22 final size:24
Alignment explanation
Indices: 73578082--73578125 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
73578072 TATGGTAAGA
73578082 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
73578104 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
73578126 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:73584320 original size:6 final size:6
Alignment explanation
Indices: 73584289--73584341 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
73584279 TTTAAGTGAA
* * *
73584289 TATTTT TAATTATT TATTGT TATTTT T-GTTT TGTTTT TATTTT TATTTT
1 TATTTT T-ATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
73584338 TATT
1 TATT
73584342 ATTTTTCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 26 0.67
7 6 0.15
8 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:73584954 original size:21 final size:20
Alignment explanation
Indices: 73584930--73584971 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
73584920 GTCTGGTGGG
*
73584930 CACACGGACGTGTGAGACCCT
1 CACACGGACGTGTCAG-CCCT
*
73584951 CACACGGTCGTGTCAGCCCT
1 CACACGGACGTGTCAGCCCT
73584971 C
1 C
73584972 TACTCAGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.19, C:0.38, G:0.26, T:0.17
Consensus pattern (20 bp):
CACACGGACGTGTCAGCCCT
Found at i:73585058 original size:22 final size:21
Alignment explanation
Indices: 73585024--73585074 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
73585014 TCCCCAAGGC
*
73585024 CATGT-CCCTAGTCCACACGGG
1 CATGTGCCTTAGT-CACACGGG
*
73585045 CATGTGCCTTAGTCACACGGT
1 CATGTGCCTTAGTCACACGGG
*
73585066 CGTGTGCCT
1 CATGTGCCT
73585075 CTCTTCACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.25
Consensus pattern (21 bp):
CATGTGCCTTAGTCACACGGG
Found at i:73585085 original size:22 final size:22
Alignment explanation
Indices: 73585057--73585098 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
73585047 TGTGCCTTAG
73585057 TCACACG-GTCGTGTGCCTCTCT
1 TCACACGAG-CGTGTGCCTCTCT
73585079 TCACACGAGCGTGTGCCTCT
1 TCACACGAGCGTGTGCCTCT
73585099 ACCACACAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (22 bp):
TCACACGAGCGTGTGCCTCTCT
Found at i:73601698 original size:16 final size:17
Alignment explanation
Indices: 73601677--73601708 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73601667 TTTTTCCCTA
73601677 TTATAAA-TATTTCTAC
1 TTATAAATTATTTCTAC
73601693 TTATAAATTATTTCTA
1 TTATAAATTATTTCTA
73601709 GGTCAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATAAATTATTTCTAC
Found at i:73612886 original size:132 final size:132
Alignment explanation
Indices: 73612649--73613717 Score: 1859
Period size: 132 Copynumber: 8.1 Consensus size: 132
73612639 CCCAGAGAAC
* *
73612649 AGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
73612714 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73612779 GT
131 GT
*
73612781 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGAATCGACGACGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
73612846 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73612911 GT
131 GT
73612913 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
73612978 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73613043 GT
131 GT
73613045 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
73613110 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73613175 GT
131 GT
73613177 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
73613242 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73613307 GT
131 GT
* * * * *
73613309 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
*
73613374 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATCGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73613439 GT
131 GT
* * *
73613441 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCACGACGCAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
*
73613506 TCTTCCCATATTGGTGGCGAAGTAGACCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
73613571 GT
131 GT
* * * * **
73613573 AGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTG
1 AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
* ** * ** * * *
73613638 TCTTCCCATACTGGTGTTGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAG
66 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA-TTGGC-GTG
*
73613703 AAGC
129 AAGT
73613707 AGATCGAAGAT
1 AGATCGAAGAT
73613718 TACAGTCTTA
Statistics
Matches: 907, Mismatches: 28, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
132 886 0.98
133 5 0.01
134 16 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (132 bp):
AGATCGAAGATAGCAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTG
TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GT
Found at i:73617107 original size:42 final size:41
Alignment explanation
Indices: 73617060--73617244 Score: 199
Period size: 42 Copynumber: 4.4 Consensus size: 41
73617050 CACAAATCTA
* * *
73617060 AAAAACGCCGCTAAAGACCAGGATCTTTCGCGGCGCTTTTAT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCTTTT-T
* * *
73617102 AAAAACGCCGCTAAAGACCTGGACCTTTAGCGGAGCTCTTTT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCT-TTTT
* *
73617144 AAGAAACGCCGCTAAAGACCAGGACCTTTAGCAGTGTTTTTTT
1 AA-AAACGCCGCTAAAGACCAGGACCTTTAGCAGCG-CTTTTT
* * * *
73617187 ACAAACGCCACTAAAGATCATGACCTTTAGCAGCGCTTTTCT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCTTTT-T
*
73617229 CACAAACGCCGCTAAA
1 -AAAAACGCCGCTAAA
73617245 AATCATGAAC
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
41 4 0.03
42 66 0.54
43 52 0.42
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCTTTTT
Found at i:73617165 original size:85 final size:85
Alignment explanation
Indices: 73617056--73617244 Score: 220
Period size: 85 Copynumber: 2.2 Consensus size: 85
73617046 ACGCCACAAA
* * * * *
73617056 TCTAAAAAACGCCGCTAAAGACCAGGATCTTTCGCGGCGCTTTTATAAAAACGCCGCTAAAGA-C
1 TCTAACAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAACGCCACTAAAGATC
* *
73617120 CTGGACCTTTAGCGGAGCTCTT
66 AT-GACCTTTAGCAGAGCT-TT
* * * * *
73617142 T-TAAGAAACGCCGCTAAAGACCAGGACCTTTAGCAGTGTTTTTTTACAAACGCCACTAAAGATC
1 TCTAACAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAACGCCACTAAAGATC
*
73617206 ATGACCTTTAGCAGCGCTTT
66 ATGACCTTTAGCAGAGCTTT
*
73617226 TCTCACAAACGCCGCTAAA
1 TCTAACAAACGCCGCTAAA
73617245 AATCATGAAC
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
84 3 0.03
85 81 0.93
86 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (85 bp):
TCTAACAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGCTTTTATAAAAACGCCACTAAAGATC
ATGACCTTTAGCAGAGCTTT
Found at i:73620094 original size:26 final size:26
Alignment explanation
Indices: 73620057--73620114 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
73620047 TGATACAAAT
73620057 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73620083 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73620109 TGATAA
1 TGATAA
73620115 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:73621631 original size:26 final size:26
Alignment explanation
Indices: 73621602--73621654 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
73621592 TTTACAGTTT
*
73621602 TACCCTTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
73621628 TACCCCTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
73621654 T
1 T
73621655 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:73625074 original size:15 final size:15
Alignment explanation
Indices: 73625048--73625084 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
73625038 GCCCTTAAAC
73625048 CATAAA-CCATAA-T
1 CATAAACCCATAATT
73625061 CACTAAACCCATAATT
1 CA-TAAACCCATAATT
73625077 CATAAACC
1 CATAAACC
73625085 TTAAAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 4 0.19
15 12 0.57
16 3 0.14
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.22
Consensus pattern (15 bp):
CATAAACCCATAATT
Found at i:73625643 original size:22 final size:22
Alignment explanation
Indices: 73625598--73625645 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
73625588 GTTTAAAATT
*
73625598 TTTTAAGGTTTAAGAGTTTAGTG
1 TTTTAAGGATTAAGAG-TTAGTG
73625621 TTTTAAGGATTATAGA-TTAGTG
1 TTTTAAGGATTA-AGAGTTAGTG
73625643 TTT
1 TTT
73625646 ATGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 11 0.48
24 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (22 bp):
TTTTAAGGATTAAGAGTTAGTG
Found at i:73625744 original size:41 final size:41
Alignment explanation
Indices: 73625687--73625905 Score: 316
Period size: 41 Copynumber: 5.3 Consensus size: 41
73625677 GTTATATGAC
* * *
73625687 TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATACT-TCGAT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GAT
* * *
73625728 TTTTAGCGGCATTTTACCAAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAT
*
73625769 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAT
73625810 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-AGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGA-T
* * *
73625851 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAT
73625892 TTTTAGCGGCGTTT
1 TTTTAGCGGCGTTT
73625906 ATTGCTCTAT
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
41 161 0.99
42 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGAT
Found at i:73627744 original size:37 final size:37
Alignment explanation
Indices: 73627703--73627779 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
73627693 AAATCTTATT
* *
73627703 GACATAATTTAAATATGCTTTACGTTAAATCCACACC
1 GACATAATTTAAATATACTTTACATTAAATCCACACC
*
73627740 GACATAATTTAAATATACTTTACATTAAATCCAGACC
1 GACATAATTTAAATATACTTTACATTAAATCCACACC
73627777 GAC
1 GAC
73627780 TTTAATTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (37 bp):
GACATAATTTAAATATACTTTACATTAAATCCACACC
Found at i:73630299 original size:7 final size:7
Alignment explanation
Indices: 73630287--73630319 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
73630277 AGCTGGATTG
73630287 ATTTAAA
1 ATTTAAA
73630294 ATTTAAA
1 ATTTAAA
73630301 ATTTAAA
1 ATTTAAA
73630308 ATTTAAA
1 ATTTAAA
73630315 ATTTA
1 ATTTA
73630320 TTTTCTAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATTTAAA
Found at i:73633021 original size:26 final size:26
Alignment explanation
Indices: 73632985--73633042 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
73632975 CATGAAATTC
73632985 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
73633011 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
73633037 TTATCA
1 TTATCA
73633043 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73645586 original size:15 final size:15
Alignment explanation
Indices: 73645563--73645594 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73645553 TTGATCTTTG
*
73645563 AAAATATAAATTGAA
1 AAAACATAAATTGAA
73645578 AAAACATAAATTGAA
1 AAAACATAAATTGAA
73645593 AA
1 AA
73645595 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (15 bp):
AAAACATAAATTGAA
Found at i:73645629 original size:89 final size:89
Alignment explanation
Indices: 73645526--73645934 Score: 505
Period size: 89 Copynumber: 4.6 Consensus size: 89
73645516 GTGAACCCAC
* * *
73645526 GGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAATATAAATTGAAAAAACATAAATTG
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAAAACAGAAATTG
*
73645591 AAAATACCTCAGCATGTGAGCTGA
66 AAAATACCTCAGCATGTGACCTGA
* *
73645615 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTTTGAAAA-GTGAAAATTG-AAAAACAG
1 GGCTCAACTCACCTCTCGCAATATGAGTT-G---ATTTTTGAAAACAT--AAATTGAAAAAACAG
*
73645678 AAATTGAAAATACCTCAGC--GTGCCCTGA
60 AAATTGAAAATACCTCAGCATGTGACCTGA
* *
73645706 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGGAGAAAACAGAAAT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACATAAATT-GAAAAAACAGAAAT
*
73645771 TGAAATTACCTCAGCATGT--CCTGA
64 TGAAAATACCTCAGCATGTGACCTGA
* * * *
73645795 GGCTCAACTCACCTCTCGTAGTATGAGTTGATTTTTGAAAACAGAAATT---AAAATAGAAATTG
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAAAACAGAAATTG
*
73645857 AAAAGACCTCAGCATGTGAGCC-GA
66 AAAATACCTCAGCATGTGA-CCTGA
* *
73645881 GGCTTAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACATAAATTGAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACATAAATTGAAA
73645935 TTACCTCAGC
Statistics
Matches: 278, Mismatches: 23, Indels: 37
0.82 0.07 0.11
Matches are distributed among these distances:
84 27 0.10
86 36 0.13
87 23 0.08
88 16 0.06
89 94 0.34
90 3 0.01
91 37 0.13
92 1 0.00
93 35 0.13
94 6 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (89 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAAAACAGAAATTG
AAAATACCTCAGCATGTGACCTGA
Found at i:73645926 original size:175 final size:177
Alignment explanation
Indices: 73645526--73646233 Score: 549
Period size: 151 Copynumber: 4.3 Consensus size: 177
73645516 GTGAACCCAC
* * *
73645526 GGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAATATAAATT-GAAAAAACATAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGGAAAAAACAGAAATT
* *
73645590 GAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTTT
66 GAAAATACCTCAGCATGT-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGG--TATTTTT
** *
73645655 GAAAAGTGAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGA
128 GAAAACAGAAAATT-AAAAACAGAAATTGAAAAGACCTCAGCGTGCCCTGA
* *
73645706 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGGAGAAAACAGAAAT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACATAAATTGGAAAAAACAGAAAT
* * *
73645771 TGAAATTACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGTAGTATGAGTT-G-ATTTTTGA
65 TGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGA
* *
73645833 AAACAG-AAATT-AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GA
130 AAACAGAAAATTAAAAACAGAAATTGAAAAGACCTCAGC--GTG-CCCTGA
* *
73645881 GGCTTAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACATAAATT----------GAAA-
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACATAAATTGGAAAAAACAGAAAT
* *
73645935 T-----TACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTTG-
65 TGAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGA
* * *
73645992 --A-AG---------AGCAGAAATCGAAAATACCTCAGCGTGCCCTGA
130 AAACAGAAAATTAAAAACAGAAATTGAAAAGACCTCAGCGTGCCCTGA
* * * *
73646028 GGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT-------T---TTTG-ACAAACATAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGGAAAAAACAGAAATT
* * * * *
73646082 G-AAATCACCTCAGCGTCT-CCTGAGGCTCAACTCACTTCTCACAATATGAGTTGAT-TTTTTG-
66 GAAAAT-ACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGA
* *
73646143 -----G-AAAGT------AGAAATTGAAAATACCTCAGCGTGCCCTGA
130 AAACAGAAAATTAAAAACAGAAATTGAAAAGACCTCAGCGTGCCCTGA
*
73646179 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATT-GAAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACATAAATTGGAAAA
73646234 TGCCTCAGCA
Statistics
Matches: 449, Mismatches: 38, Indels: 100
0.76 0.06 0.17
Matches are distributed among these distances:
136 2 0.00
139 1 0.00
145 3 0.01
146 3 0.01
147 38 0.08
149 21 0.05
150 1 0.00
151 115 0.26
156 2 0.00
157 1 0.00
159 45 0.10
160 6 0.01
161 1 0.00
162 4 0.01
164 1 0.00
165 4 0.01
173 24 0.05
174 1 0.00
175 55 0.12
176 13 0.03
179 1 0.00
180 66 0.15
181 11 0.02
182 30 0.07
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (177 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGGAAAAAACAGAAATT
GAAAATACCTCAGCATGTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTATTTTTGAA
AACAGAAAATTAAAAACAGAAATTGAAAAGACCTCAGCGTGCCCTGA
Found at i:73646033 original size:74 final size:73
Alignment explanation
Indices: 73645844--73646450 Score: 630
Period size: 74 Copynumber: 8.2 Consensus size: 73
73645834 AACAGAAATT
* * * * *
73645844 AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAACTCACCTCTCGCGATATGAG
1 AAAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAG
73645908 TTGA-TTTTTG
63 TTGATTTTTTG
* * *
73645918 ACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
73645983 GATTTTTTG
65 GATTTTTTG
* * *
73645992 AAGAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
73646057 GATTTTTTTTTG
65 GA---TTTTTTG
* * *
73646069 ACAAACATAAATTG-AAATCACCTCAGCGT-CTCCTGAGGCTCAACTCACTTCTCACAATATGAG
1 A-AAACAGAAATTGAAAAT-ACCTCAGCGTGC-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
73646132 TTGATTTTTTGG
63 TTGATTTTTT-G
** *
73646144 AAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
73646209 A-TTTTTG
66 ATTTTTTG
* * * * *
73646216 AAAAACATAAATTGAAAATGCCTCAGCATGCCCCGAGGCTCCACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
73646281 GA-----TA
65 GATTTTTTG
* * *
73646285 AAAACAGAAATTGAAAGTGA-CTCAACACGTAAG-CC-AAGGCTCAACTCACCTCTCGCAATATG
1 AAAACAGAAATTGAAAAT-ACCTC-A-GCGT--GCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
73646347 AGTTAATTTTTTTG
61 AGTTGA-TTTTTTG
** * * * *
73646361 AAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTTTCGCAATTATGAGTT
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTT
73646426 GATTTTTTTG
65 GA-TTTTTTG
73646436 AAAACAGAAA-TGAAA
1 AAAACAGAAATTGAAA
73646451 CATCCACATA
Statistics
Matches: 449, Mismatches: 55, Indels: 58
0.80 0.10 0.10
Matches are distributed among these distances:
68 19 0.04
69 2 0.00
70 32 0.07
71 2 0.00
72 5 0.01
73 100 0.22
74 153 0.34
75 53 0.12
76 23 0.05
77 59 0.13
78 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:73646105 original size:151 final size:146
Alignment explanation
Indices: 73645879--73646450 Score: 605
Period size: 151 Copynumber: 3.9 Consensus size: 146
73645869 CATGTGAGCC
* *
73645879 GAGGCTTAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAA-TACCTCAG
*
73645944 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GAAGAGCAGAAATCGAA
65 CGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAA-AGCAGAAATCGAA
73646008 AATACCTCAGCGTGCCCT
129 AATACCTCAGCGTGCCCT
*
73646026 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTGACAAACATAAATTGAAATCACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGACAAACATAAATTGAAAT-ACC
* * * *
73646091 TCAGCGTCTCCTGAGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTTGGAAAGTAGAAATT
61 TCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGCAGAAATC
73646156 GAAAATACCTCAGCGTGCCCT
126 GAAAATACCTCAGCGTGCCCT
* * *
73646177 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGAAAATGCCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTG-AAATACCTCAG
* * * * * *
73646242 CATGC-CCCGAGGCTCCACTCACCTCTCGCAATATGAGTTGA-----T-AAAAACAGAAATTGAA
65 CGT-CTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGCAGAAATCGAA
* *
73646300 AGTGA-CTCAACACGTAAG-CC-
129 AAT-ACCTC-A-GCGT--GCCCT
* * ** * *
73646320 AAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGA-AAGTAGAATTTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACATAAATTG-AAATACCTC
* * * * *
73646384 GGCGTGC-CCCGAGGCTCAACTCACCTTTCGCAATTATGAGTTGATTTTTTTGAAAACAGAAAT-
63 AGCGT-CTCCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTGGAAAGCAGAAATC
73646447 GAAA
126 GAAA
73646451 CATCCACATA
Statistics
Matches: 368, Mismatches: 35, Indels: 41
0.83 0.08 0.09
Matches are distributed among these distances:
141 18 0.05
142 3 0.01
143 33 0.09
144 48 0.13
145 18 0.05
147 89 0.24
148 5 0.01
150 6 0.02
151 145 0.39
152 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (146 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATACCTCAGC
GTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAGCAGAAATCGAAAA
TACCTCAGCGTGCCCT
Found at i:73646342 original size:70 final size:70
Alignment explanation
Indices: 73646178--73646350 Score: 197
Period size: 70 Copynumber: 2.4 Consensus size: 70
73646168 GCGTGCCCTG
* * * *
73646178 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGAAAATGCCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTGAAAAACAGAAATTGAAAATGACTCAAC
** *
73646243 ATGCCCCG
63 ATAACCCA
* *
73646251 AGGCTCCACTCACCTCTCGCAATATGAGTTGA-T-AAAAACAGAAATTGAAAGTGACTCAACACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAACAGAAATTGAAAATGACTCAACA--
*
73646314 TAAGCCA
64 TAACCCA
73646321 AGGCTCAACTCACCTCTCGCAATATGAGTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTT
73646351 AATTTTTTTG
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
68 24 0.28
69 1 0.01
70 32 0.37
73 30 0.34
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAAAACAGAAATTGAAAATGACTCAACATA
ACCCA
Found at i:73648619 original size:12 final size:12
Alignment explanation
Indices: 73648602--73648626 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73648592 TCTCTTTTTC
73648602 AATGCTGAAACA
1 AATGCTGAAACA
73648614 AATGCTGAAACA
1 AATGCTGAAACA
73648626 A
1 A
73648627 TGTGCAGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (12 bp):
AATGCTGAAACA
Found at i:73659440 original size:26 final size:26
Alignment explanation
Indices: 73659361--73659449 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
73659351 ATATAAGTAA
* *
73659361 TATATAACTAGTAATATCAAAATATATA
1 TATATAA-T-GTAATATAAAAATATATG
* *
73659389 CATGATAATAT-ATATAAAAATATATG
1 TAT-ATAATGTAATATAAAAATATATG
*
73659415 TATATAATGTAATATGAAAATATATG
1 TATATAATGTAATATAAAAATATATG
73659441 TAGTATAAT
1 TA-TATAAT
73659450 ATTAAAATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 6 0.12
26 31 0.61
27 7 0.14
28 3 0.06
29 4 0.08
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (26 bp):
TATATAATGTAATATAAAAATATATG
Found at i:73659500 original size:32 final size:32
Alignment explanation
Indices: 73659456--73659520 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
73659446 TAATATTAAA
73659456 ATATAATAATACAACATTAAAAATATATGATAT
1 ATATAATAATACAACATTAAAAATATAT-ATAT
* *
73659489 ATATAA-AATACAATATTAAAAGTATATATAT
1 ATATAATAATACAACATTAAAAATATATATAT
73659520 A
1 A
73659521 ACATATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (32 bp):
ATATAATAATACAACATTAAAAATATATATAT
Found at i:73659504 original size:53 final size:51
Alignment explanation
Indices: 73659447--73659545 Score: 139
Period size: 53 Copynumber: 1.9 Consensus size: 51
73659437 TATGTAGTAT
73659447 AATATTAAAA-TATAATAATACAACAT-TAAAAATATATGATATATATAAAATAC
1 AATATTAAAAGTAT-AT-ATACAACATATAAAAATATAT-ATA-ATATAAAATAC
*
73659500 AATATTAAAAGTATATATATAACATATAAAAATATATATAATATAA
1 AATATTAAAAGTATATATACAACATATAAAAATATATATAATATAA
73659546 TACCCAAGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
51 6 0.14
52 11 0.26
53 23 0.53
54 3 0.07
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (51 bp):
AATATTAAAAGTATATATACAACATATAAAAATATATATAATATAAAATAC
Found at i:73661137 original size:24 final size:25
Alignment explanation
Indices: 73661092--73661155 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
73661082 ATATATGTAT
73661092 AAATATATATAAAAACATTTAAATG
1 AAATATATATAAAAACATTTAAATG
*
73661117 AAATAT-TATACAAA-ATGTTAAACT-
1 AAATATATATAAAAACAT-TTAAA-TG
73661141 -AATATGATATAAAAA
1 AAATAT-ATATAAAAA
73661156 AAAAGAACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
23 7 0.21
24 12 0.36
25 14 0.42
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (25 bp):
AAATATATATAAAAACATTTAAATG
Found at i:73662855 original size:15 final size:15
Alignment explanation
Indices: 73662837--73662893 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
73662827 TATCTGTTTT
73662837 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
73662852 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
73662867 ATTGAATTTATATTG
1 ATTGAATTTATATTG
73662882 ATTGAA-TTATAT
1 ATTGAATTTATAT
73662894 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:73662872 original size:30 final size:28
Alignment explanation
Indices: 73662833--73662891 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
73662823 TGAATATCTG
73662833 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
73662862 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
73662891 T
1 T
73662892 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:73663345 original size:21 final size:21
Alignment explanation
Indices: 73663267--73663351 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
73663257 TTTACCATTT
* *
73663267 AGGCACTTTATGTGTCGTATTTC
1 AGGCACCTCATGTGTCGTA--TC
* *
73663290 AGGCGCCTCGTGTGTCGTATC
1 AGGCACCTCATGTGTCGTATC
*
73663311 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCATGTGTCGTATC
* *
73663332 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCATGTGTCGTAT
73663352 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
21 39 0.72
23 15 0.28
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.35
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTATC
Found at i:73663534 original size:18 final size:19
Alignment explanation
Indices: 73663513--73663553 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
73663503 AATGAAATGA
73663513 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
73663531 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
73663550 GAAA
1 GAAA
73663554 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:73665129 original size:59 final size:59
Alignment explanation
Indices: 73665057--73665176 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
73665047 CTGAATGGAT
73665057 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
1 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
73665116 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
1 AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
73665175 AA
1 AA
73665177 AATGATCTTG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (59 bp):
AACATATCTGTTGTTAATATTTTGTACATATAGTGTGGAAGAATTGAAAATTACAGCTG
Found at i:73669537 original size:15 final size:15
Alignment explanation
Indices: 73669519--73669575 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
73669509 TATCTGTTTT
73669519 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* * *
73669534 ATTGAAATTATTTTC
1 ATTGAATTTATATTG
73669549 ATTGAATTTATATTG
1 ATTGAATTTATATTG
73669564 ATTGAA-TTATAT
1 ATTGAATTTATAT
73669576 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:73669553 original size:30 final size:28
Alignment explanation
Indices: 73669515--73669573 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
73669505 TGAATATCTG
73669515 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
73669544 TTTTCATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
73669573 T
1 T
73669574 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:73669975 original size:23 final size:23
Alignment explanation
Indices: 73669945--73670012 Score: 79
Period size: 21 Copynumber: 3.1 Consensus size: 23
73669935 CGGCTTTACC
73669945 ATTT-AGGCACTTTATGTGTCGT
1 ATTTCAGGCACTTTATGTGTCGT
* * **
73669967 ATTTCAGGCGCCTCGTGTGTCGT
1 ATTTCAGGCACTTTATGTGTCGT
73669990 A--TCAGGCACTTTATGTGTCGT
1 ATTTCAGGCACTTTATGTGTCGT
73670011 AT
1 AT
73670013 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
21 17 0.47
22 4 0.11
23 15 0.42
ACGTcount: A:0.16, C:0.19, G:0.25, T:0.40
Consensus pattern (23 bp):
ATTTCAGGCACTTTATGTGTCGT
Found at i:73670195 original size:18 final size:19
Alignment explanation
Indices: 73670174--73670214 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
73670164 AATGAAATGA
73670174 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
73670192 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
73670211 GAAA
1 GAAA
73670215 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:73684399 original size:14 final size:14
Alignment explanation
Indices: 73684371--73684422 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
73684361 TTTTTTACGA
* *
73684371 ATATTAAATTATTT
1 ATATTATATTTTTT
73684385 ATATTATATTTTTT
1 ATATTATATTTTTT
* *
73684399 AAATTTTATTTTTT
1 ATATTATATTTTTT
73684413 A-ATTAT-TTTT
1 ATATTATATTTT
73684423 AATGGTGTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
12 4 0.12
13 4 0.12
14 25 0.76
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATATTATATTTTTT
Found at i:73694098 original size:16 final size:16
Alignment explanation
Indices: 73694079--73694115 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
73694069 GTAAAAAGTA
73694079 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
73694095 ATATAAACTTTATAAT
1 ATATAAAATTTATAAT
73694111 A-ATAA
1 ATATAA
73694116 TAAAAAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:73701896 original size:14 final size:13
Alignment explanation
Indices: 73701873--73701904 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
73701863 ATAATAATAA
73701873 TAATTATTAGTGT
1 TAATTATTAGTGT
73701886 TAATCTATTAGTGT
1 TAAT-TATTAGTGT
73701900 TAATT
1 TAATT
73701905 TATATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAATTATTAGTGT
Found at i:73702624 original size:31 final size:31
Alignment explanation
Indices: 73702574--73702637 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
73702564 AATTATACAC
* *
73702574 ATAAATTTTTAATTGTGATTTAAATGTATAT
1 ATAAAATTTTAATTGTGATTCAAATGTATAT
* * *
73702605 ATAAAATTTTGATTTTGATTCAATTGTATAT
1 ATAAAATTTTAATTGTGATTCAAATGTATAT
73702636 AT
1 AT
73702638 TTAAATAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (31 bp):
ATAAAATTTTAATTGTGATTCAAATGTATAT
Found at i:73703758 original size:14 final size:13
Alignment explanation
Indices: 73703739--73703768 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
73703729 TTTCTTTTCG
73703739 TTTTTGTTGTTTTT
1 TTTTTGTT-TTTTT
73703753 TTTTTGTTTTTTT
1 TTTTTGTTTTTTT
73703766 TTT
1 TTT
73703769 AAATCTATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (13 bp):
TTTTTGTTTTTTT
Found at i:73703762 original size:10 final size:11
Alignment explanation
Indices: 73703739--73703768 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
73703729 TTTCTTTTCG
*
73703739 TTTTTGTTGTT
1 TTTTTTTTGTT
73703750 TTTTTTTTGTT
1 TTTTTTTTGTT
73703761 TTTTTTTT
1 TTTTTTTT
73703769 AAATCTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:73704640 original size:10 final size:10
Alignment explanation
Indices: 73704625--73704659 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
73704615 ACTATTGGTA
73704625 TATTATTATC
1 TATTATTATC
*
73704635 TATTATTATT
1 TATTATTATC
73704645 TCATTATTATC
1 T-ATTATTATC
73704656 TATT
1 TATT
73704660 CATCTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (10 bp):
TATTATTATC
Found at i:73706170 original size:14 final size:14
Alignment explanation
Indices: 73706151--73706180 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73706141 TATTTTCAAC
73706151 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
73706165 ATAGATTCACGCAT
1 ATAGATTAACGCAT
73706179 AT
1 AT
73706181 TTATAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:73710741 original size:17 final size:17
Alignment explanation
Indices: 73710709--73710742 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73710699 ATTACGAGAA
**
73710709 AGATAATTTACTTGAGT
1 AGATAATTTAAATGAGT
73710726 AGATAATTTAAATGAGT
1 AGATAATTTAAATGAGT
73710743 CCATAATCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (17 bp):
AGATAATTTAAATGAGT
Found at i:73715832 original size:24 final size:23
Alignment explanation
Indices: 73715800--73715847 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
73715790 TTCGGGCTGT
*
73715800 ATAATAGGAAGTTCATAAGAGCC
1 ATAATAGGAAGCTCATAAGAGCC
*
73715823 ATAATTAGGAAGCTCATACGAGCC
1 ATAA-TAGGAAGCTCATAAGAGCC
73715847 A
1 A
73715848 ATAACGGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (23 bp):
ATAATAGGAAGCTCATAAGAGCC
Found at i:73715885 original size:25 final size:25
Alignment explanation
Indices: 73715816--73715984 Score: 84
Period size: 24 Copynumber: 6.9 Consensus size: 25
73715806 GGAAGTTCAT
* **
73715816 AAGAGCCA-TAATTAGGAAGCTCAT
1 AAGAGCCATTAATCAGGAAGCTCCG
* * * *
73715840 ACGAGCCAATAA-CGGGTAGCTCCG
1 AAGAGCCATTAATCAGGAAGCTCCG
* *
73715864 AAGAGCTATTAATCAGGAAGCTCTG
1 AAGAGCCATTAATCAGGAAGCTCCG
* * *
73715889 AATAG-CA-TATCTCAGGAAG-TTC-
1 AAGAGCCATTA-ATCAGGAAGCTCCG
**
73715911 AAGCGAGCCA-T-ATGGGGAAGCTCCG
1 AA--GAGCCATTAATCAGGAAGCTCCG
* *
73715936 GAGAGCCATTAATCAGGAAGCTCACA
1 AAGAGCCATTAATCAGGAAGCTC-CG
* *
73715962 AAGAGCCTTTAATCTGGAAGCTC
1 AAGAGCCATTAATCAGGAAGCTC
73715985 ATGAACAGCC
Statistics
Matches: 105, Mismatches: 29, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
22 2 0.02
23 15 0.14
24 37 0.35
25 30 0.29
26 21 0.20
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (25 bp):
AAGAGCCATTAATCAGGAAGCTCCG
Found at i:73715994 original size:26 final size:26
Alignment explanation
Indices: 73715939--73715996 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
73715929 AGCTCCGGAG
*
73715939 AGCCATTAATCAGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAC
* * **
73715965 AGCCTTTAATCTGGAAGCTCATGAAC
1 AGCCATTAATCAGGAAGCTCACAAAC
73715991 AGCCAT
1 AGCCAT
73715997 ATATCGGGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAC
Found at i:73718846 original size:3 final size:3
Alignment explanation
Indices: 73718838--73718893 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
73718828 ACTTTATCCC
73718838 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
73718886 TTA TTA TT
1 TTA TTA TT
73718894 GTTTGGATGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:73722089 original size:13 final size:13
Alignment explanation
Indices: 73722068--73722114 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
73722058 CTATTCAATT
*
73722068 AACATAAAATAAA
1 AACAAAAAATAAA
73722081 AACAAAAAAT-AA
1 AACAAAAAATAAA
* *
73722093 GACAACAAATAAA
1 AACAAAAAATAAA
73722106 AACAAAAAA
1 AACAAAAAA
73722115 ATAAGACAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.79, C:0.11, G:0.02, T:0.09
Consensus pattern (13 bp):
AACAAAAAATAAA
Found at i:73722102 original size:25 final size:26
Alignment explanation
Indices: 73722074--73722123 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
73722064 AATTAACATA
73722074 AAATAAAAAC-AAAAAATAAGACAAC
1 AAATAAAAACAAAAAAATAAGACAAC
73722099 AAATAAAAACAAAAAAATAAGACAA
1 AAATAAAAACAAAAAAATAAGACAA
73722124 TACCATATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.78, C:0.10, G:0.04, T:0.08
Consensus pattern (26 bp):
AAATAAAAACAAAAAAATAAGACAAC
Found at i:73722278 original size:15 final size:15
Alignment explanation
Indices: 73722258--73722296 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
73722248 CCATTTTCAG
73722258 CGATAACTTTATCGT
1 CGATAACTTTATCGT
*
73722273 CGATAACTTTCTCGT
1 CGATAACTTTATCGT
73722288 CGATAACTT
1 CGATAACTT
73722297 CTTCTGAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (15 bp):
CGATAACTTTATCGT
Found at i:73731547 original size:12 final size:12
Alignment explanation
Indices: 73731530--73731569 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
73731520 CAAATTTTTC
73731530 ATTTTAATATAT
1 ATTTTAATATAT
73731542 ATTTTAATATAT
1 ATTTTAATATAT
*
73731554 GTTTTAA-ATAT
1 ATTTTAATATAT
73731565 -TTTTA
1 ATTTTA
73731570 TATTATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 18 0.67
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (12 bp):
ATTTTAATATAT
Found at i:73733505 original size:29 final size:29
Alignment explanation
Indices: 73733454--73733511 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
73733444 TTATTTTTTC
*
73733454 AATTAATATTAAAAACCATAAAAAATCTAA
1 AATTAATATTAAAAAACATAAAAAA-CTAA
**
73733484 AATTAATA-TAAAAAATTTAAAAAACTAA
1 AATTAATATTAAAAAACATAAAAAACTAA
73733512 TCAAATTCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 13 0.52
30 8 0.32
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (29 bp):
AATTAATATTAAAAAACATAAAAAACTAA
Found at i:73740247 original size:14 final size:14
Alignment explanation
Indices: 73740228--73740266 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
73740218 TTGTTTCATT
*
73740228 GAAAATAACTTCTG
1 GAAAATGACTTCTG
*
73740242 GAAAATGATTTCTG
1 GAAAATGACTTCTG
73740256 GAAAATGACTT
1 GAAAATGACTT
73740267 AATTTCTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGACTTCTG
Found at i:73740851 original size:16 final size:16
Alignment explanation
Indices: 73740820--73740856 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73740810 ATGTGAAGAA
73740820 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
73740836 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
73740852 TATTA
1 TATTA
73740857 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:73740892 original size:16 final size:15
Alignment explanation
Indices: 73740871--73740916 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
73740861 AAAATTAAAA
*
73740871 TATTAAATAATTTAT
1 TATTTAATAATTTAT
*
73740886 TATTTAATAAATTA-
1 TATTTAATAATTTAT
*
73740900 TA-TTAGTAATTTAT
1 TATTTAATAATTTAT
73740914 TAT
1 TAT
73740917 ATGGCTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 9 0.36
14 4 0.16
15 12 0.48
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATAATTTAT
Found at i:73741004 original size:31 final size:30
Alignment explanation
Indices: 73740924--73741007 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 30
73740914 TATATGGCTA
* *
73740924 AATA-TAAATAATAAAATATGTTTGTTTAAT
1 AATATTAAATAATTAAATAT-TTTATTTAAT
*
73740954 AATATTAAA-AACTATAATATTTTATATTAAT
1 AATATTAAATAATTA-AATATTTTAT-TTAAT
73740985 AAT-TTAAATAATTTAAATATTTT
1 AATATTAAATAA-TTAAATATTTT
73741008 TAAAAATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
30 16 0.36
31 27 0.60
32 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.46
Consensus pattern (30 bp):
AATATTAAATAATTAAATATTTTATTTAAT
Found at i:73741714 original size:15 final size:15
Alignment explanation
Indices: 73741694--73741726 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
73741684 AAATCTGCAA
73741694 AAAAAAGAAAAAG-AC
1 AAAAAA-AAAAAGAAC
73741709 AAAAAAAAAAAGAAC
1 AAAAAAAAAAAGAAC
73741724 AAA
1 AAA
73741727 GAGTAGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAC
Found at i:73742989 original size:3 final size:3
Alignment explanation
Indices: 73742983--73743049 Score: 71
Period size: 3 Copynumber: 21.3 Consensus size: 3
73742973 ATTATTTCAC
* * *
73742983 TAT TAT TAT TAT TAT TAT TAT CAT ATAG TAT TAT TAAT TGAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT T-AT TAT TAT
*
73743031 TAT TAT TGT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
73743050 TCTTATTAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
3 47 0.89
4 6 0.11
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:73743990 original size:25 final size:24
Alignment explanation
Indices: 73743949--73744002 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
73743939 TAACTATTAC
* *
73743949 TAAAACATAATATAATAATAG-AA
1 TAAAACATAATAAAATAAAAGAAA
73743972 TAAAACATAACATAAAATAAAAGAAA
1 TAAAACAT-A-ATAAAATAAAAGAAA
73743998 TAAAA
1 TAAAA
73744003 TAAAACAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 8 0.31
24 1 0.04
25 10 0.38
26 7 0.27
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (24 bp):
TAAAACATAATAAAATAAAAGAAA
Found at i:73745214 original size:15 final size:16
Alignment explanation
Indices: 73745184--73745220 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73745174 GGATGATGAG
*
73745184 TTTATGAAATTGATTA
1 TTTATTAAATTGATTA
73745200 TTTATTAAA-TGATTA
1 TTTATTAAATTGATTA
73745215 -TTATTA
1 TTTATTA
73745221 TGTATGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 6 0.30
16 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (16 bp):
TTTATTAAATTGATTA
Found at i:73747847 original size:21 final size:19
Alignment explanation
Indices: 73747811--73747859 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 19
73747801 TCTTCTGTAC
73747811 TATTATATATATTTTCTAA
1 TATTATATATATTTTCTAA
73747830 TATTACTATATATATTTCTAA
1 TATTA-TATATAT-TTTCTAA
73747851 TA-TATATAT
1 TATTATATAT
73747860 TAAAAAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.36
20 9 0.32
21 9 0.32
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTATATATATTTTCTAA
Found at i:73752326 original size:4 final size:4
Alignment explanation
Indices: 73752307--73752346 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
73752297 TCGTGATTGG
* * *
73752307 CATT CATT TATG CATT CATT CATT TATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT
73752347 GCATATCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.03, T:0.53
Consensus pattern (4 bp):
CATT
Found at i:73752328 original size:16 final size:16
Alignment explanation
Indices: 73752307--73752346 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
73752297 TCGTGATTGG
73752307 CATTCATTTATGCATT
1 CATTCATTTATGCATT
*
73752323 CATTCATTTATTCATT
1 CATTCATTTATGCATT
73752339 CATTCATT
1 CATTCATT
73752347 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.03, T:0.53
Consensus pattern (16 bp):
CATTCATTTATGCATT
Found at i:73761031 original size:87 final size:89
Alignment explanation
Indices: 73760818--73761036 Score: 273
Period size: 90 Copynumber: 2.5 Consensus size: 89
73760808 AATTTCTGTT
* * *
73760818 TTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCGGTTCACATACTGAGGCATTTC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACTGAGGCATTTC
** * * *
73760883 CAATTTCTGTTCTTTCAATTTATG
66 CAAAATCTGCTCTTTCAAGTTAAG
* * *
73760907 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACAT-GTCGAGGTATT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACT-GAGGCATT
*
73760971 TTCAAAATCTGCT-TTTCAAGTTAAG
64 TCCAAAATCTGCTCTTTCAAGTTAAG
* *
73760996 TTTC-AAAAATCAACTCATATTACGAGAGGTTAGTTGAGCCT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
73761037 TTTAATTTCT
Statistics
Matches: 113, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
87 34 0.30
89 19 0.17
90 60 0.53
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (89 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACTGAGGCATTTC
CAAAATCTGCTCTTTCAAGTTAAG
Found at i:73761159 original size:73 final size:73
Alignment explanation
Indices: 73761036--73761236 Score: 377
Period size: 73 Copynumber: 2.8 Consensus size: 73
73761026 TAGTTGAGCC
*
73761036 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACG
73761100 CTGAGGCA
66 CTGAGGCA
73761108 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACG
*
73761173 CTGAGGTA
66 CTGAGGCA
73761181 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
73761237 TTTAATTTCT
Statistics
Matches: 126, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
72 4 0.03
73 122 0.97
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATACACG
CTGAGGCA
Found at i:73761274 original size:56 final size:54
Alignment explanation
Indices: 73761181--73761343 Score: 265
Period size: 56 Copynumber: 3.0 Consensus size: 54
73761171 CGCTGAGGTA
73761181 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
1 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
73761236 TTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGATGAGTTGAGCC
1 TTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
* *
73761292 TTTTAATTTATGTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGC
73761344 TTCGGGTCAC
Statistics
Matches: 102, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
53 33 0.32
54 14 0.14
55 4 0.04
56 51 0.50
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (54 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:73774066 original size:44 final size:43
Alignment explanation
Indices: 73773999--73774399 Score: 207
Period size: 44 Copynumber: 8.7 Consensus size: 43
73773989 TATCTCCTTA
* *
73773999 AAGTTGCAGTGGAG-CAAGATGAAGCTACAAATCCTATACCCCTG
1 AAGTTGCAGTGG-GTC-GGATGAAACTACAAATCCTATACCCCTG
* * *
73774043 AAGTTGCAGTGGGTCGGATTGAAGCTACAATTCCTATACCCCTA
1 AAGTTGCAGTGGGTCGGA-TGAAACTACAAATCCTATACCCCTG
* * *
73774087 AAGTTGCAGTAGGTCGGAATGAAACTATAATGACGAATCTTAT-CTCCCTG
1 AAGTTGCAGTGGGTCGG-ATGAAAC-----T-ACAAATCCTATAC-CCCTG
* ** * * ** *
73774137 AAGTTACAGTGGAGTAAGATGAAGCTACAAATCCTAAACCTTTA
1 AAGTTGCAGTGG-GTCGGATGAAACTACAAATCCTATACCCCTG
* *
73774181 AAGTTGCAGTGGGTCGGATTAAAACTACAAATGACAAATCT-TATCTCCCTA
1 AAGTTGCAGTGGGTCGGA-TGAAACTACAAAT--C----CTATA-C-CCCTG
* ** * *
73774232 AAATTGCAGTGGAACAAGATGAAGCTACAAATCCTATACCCCTG
1 AAGTTGCAGTGGGTC-GGATGAAACTACAAATCCTATACCCCTG
* *
73774276 AAGTTGCAGTGGGTCGGATTGAAACTACAATGACGAATCTTAT-CTCTCTG
1 AAGTTGCAGTGGGTCGGA-TGAAACTAC----A--AATCCTATAC-CCCTG
* * * *
73774326 AAGTTGCAGTGGGACAAGATAAAACTATAAATCCTATACCCCTG
1 AAGTTGCAGTGGGTC-GGATGAAACTACAAATCCTATACCCCTG
* *
73774370 AAGTTGCAGTGGGTCAGGTTAAAACTACAA
1 AAGTTGCAGTGGGTC-GGATGAAACTACAA
73774400 TAAAAAATCT
Statistics
Matches: 272, Mismatches: 52, Indels: 66
0.70 0.13 0.17
Matches are distributed among these distances:
43 9 0.03
44 150 0.55
45 7 0.03
46 4 0.01
48 1 0.00
49 5 0.02
50 63 0.23
51 31 0.11
52 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (43 bp):
AAGTTGCAGTGGGTCGGATGAAACTACAAATCCTATACCCCTG
Found at i:73774083 original size:138 final size:138
Alignment explanation
Indices: 73773924--73774210 Score: 412
Period size: 138 Copynumber: 2.1 Consensus size: 138
73773914 GGGAAACAGA
* * * *
73773924 TGAAGCTACAATTCCTATACCCTTGAACTTGCAGTAGGTCAGAATAAAATTACAATGGCGAATCT
1 TGAAGCTACAATTCCTATACCCCTAAACTTGCAGTAGGTCAGAATAAAACTACAATGACGAATCT
* * * *
73773989 TATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTG
66 TATCTCCCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTAAACCCCTAAAGTTGCAGTG
73774054 GGTCGGAT
131 GGTCGGAT
* * * *
73774062 TGAAGCTACAATTCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTATAATGACGAATCT
1 TGAAGCTACAATTCCTATACCCCTAAACTTGCAGTAGGTCAGAATAAAACTACAATGACGAATCT
* * **
73774127 TATCTCCCTGAAGTTACAGTGGAGTAAGATGAAGCTACAAATCCTAAACCTTTAAAGTTGCAGTG
66 TATCTCCCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTAAACCCCTAAAGTTGCAGTG
73774192 GGTCGGAT
131 GGTCGGAT
* *
73774200 TAAAACTACAA
1 TGAAGCTACAA
73774211 ATGACAAATC
Statistics
Matches: 131, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 131 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (138 bp):
TGAAGCTACAATTCCTATACCCCTAAACTTGCAGTAGGTCAGAATAAAACTACAATGACGAATCT
TATCTCCCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTAAACCCCTAAAGTTGCAGTG
GGTCGGAT
Found at i:73774137 original size:94 final size:94
Alignment explanation
Indices: 73774025--73774515 Score: 515
Period size: 94 Copynumber: 5.2 Consensus size: 94
73774015 AGATGAAGCT
* * * *
73774025 ACAAATCCTATAC-CCCTGAAGTTGCAGTGGGTC-GGATTGAAGCTACAATTCCTATACCCCTAA
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGGACAAGA-TGAAGCTACAAATCCTATACCCCTAA
* * * *
73774088 AGTTGCAGTAGGTCGGAATGAAACTATAATG
64 AGTTGCAGTGGGTCGGATTAAAACTACAATG
* * * * **
73774119 ACGAATCTTATCTCCCTGAAGTTACAGT-GGAGTAAGATGAAGCTACAAATCCTAAACCTTTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGGA-CAAGATGAAGCTACAAATCCTATACCCCTAAA
73774183 GTTGCAGTGGGTCGGATTAAAACTACAAATG
65 GTTGCAGTGGGTCGGATTAAAACTAC-AATG
* * * *
73774214 ACAAATCTTATCTCCCTAAAATTGCAGTGGAACAAGATGAAGCTACAAATCCTATACCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGGACAAGATGAAGCTACAAATCCTATACCCCTAAAG
*
73774279 TTGCAGTGGGTCGGATTGAAACTACAATG
66 TTGCAGTGGGTCGGATTAAAACTACAATG
* * * * * *
73774308 ACGAATCTTATCTCTCTGAAGTTGCAGTGGGACAAGATAAAACTATAAATCCTATACCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGGACAAGATGAAGCTACAAATCCTATACCCCTAAAG
*
73774373 TTGCAGTGGGTCAGG-TTAAAACTACAATA
66 TTGCAGTGGGTC-GGATTAAAACTACAATG
* * * * * * * **
73774402 AAAAATCTTATCTCCCTGAAATTGCAAT-GGAGTAAGATGAAGCTATAAATCTTATGCTTCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGGA-CAAGATGAAGCTACAAATCCTATACCCCTAAA
* ** * **
73774466 GTTACAGTGGGTTAGAATAAAACTACAACA
65 GTTGCAGTGGGTCGGATTAAAACTACAATG
*
73774496 ACAAATCTTATCTCCTTGAA
1 ACAAATCTTATCTCCCTGAA
73774516 TTTGTAACGA
Statistics
Matches: 334, Mismatches: 55, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
93 7 0.02
94 241 0.72
95 84 0.25
96 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (94 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGGACAAGATGAAGCTACAAATCCTATACCCCTAAAG
TTGCAGTGGGTCGGATTAAAACTACAATG
Found at i:73774257 original size:189 final size:188
Alignment explanation
Indices: 73774062--73774515 Score: 552
Period size: 189 Copynumber: 2.4 Consensus size: 188
73774052 TGGGTCGGAT
* *
73774062 TGAAGCTACAATTCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTATAATGACGAATCT
1 TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTACAATGACGAATCT
* * * **
73774127 TATCTCCCTGAAGTTACAGT-GGAGTAAGATGAAGCTACAAATCCTAAACCTTTAAAGTTGCAGT
66 TATCTCCCTGAAGTTACAGTGGGA-CAAGATAAAACTACAAATCCTAAACCCCTAAAGTTGCAGT
* * *
73774191 GGGTC-GGATTAAAACTACAAATGACAAATCTTATCTCCCTAAAATTGCAGTGGAACAAGA
130 GGGTCAGG-TTAAAACTAC-AATAAAAAATCTTATCTCCCTAAAATTGCAATGGAACAAGA
* * *
73774251 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAACTACAATGACGAATCT
1 TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTACAATGACGAATCT
* * * * *
73774316 TATCTCTCTGAAGTTGCAGTGGGACAAGATAAAACTATAAATCCTATACCCCTGAAGTTGCAGTG
66 TATCTCCCTGAAGTTACAGTGGGACAAGATAAAACTACAAATCCTAAACCCCTAAAGTTGCAGTG
* **
73774381 GGTCAGGTTAAAACTACAATAAAAAATCTTATCTCCCTGAAATTGCAATGGAGTAAGA
131 GGTCAGGTTAAAACTACAATAAAAAATCTTATCTCCCTAAAATTGCAATGGAACAAGA
* * * ** * * ** * ** *
73774439 TGAAGCTATAAATCTTATGCTTCTAAAGTTACAGTGGGTTAGAATAAAACTACAACAACAAATCT
1 TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTACAATGACGAATCT
*
73774504 TATCTCCTTGAA
66 TATCTCCCTGAA
73774516 TTTGTAACGA
Statistics
Matches: 226, Mismatches: 37, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
188 96 0.42
189 125 0.55
190 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (188 bp):
TGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTAGGTCGGAATGAAACTACAATGACGAATCT
TATCTCCCTGAAGTTACAGTGGGACAAGATAAAACTACAAATCCTAAACCCCTAAAGTTGCAGTG
GGTCAGGTTAAAACTACAATAAAAAATCTTATCTCCCTAAAATTGCAATGGAACAAGA
Found at i:73774351 original size:50 final size:47
Alignment explanation
Indices: 73774181--73774427 Score: 163
Period size: 44 Copynumber: 5.2 Consensus size: 47
73774171 TAAACCTTTA
*
73774181 AAGTTGCAGTGGGTC-GGATTAAAACTACAAATGACAAATCTTATCTCCCTA
1 AAGTTGCAGTGGGTCAGGA-TAAAACTAC-AAT---AAATCTTATCTCCCTG
* ** * * * *
73774232 AAATTGCAGTGGAACAAGATGAAGCTAC---AAATCCTATAC-CCCTG
1 AAGTTGCAGTGGGTCAGGATAAAACTACAATAAATCTTAT-CTCCCTG
* *
73774276 AAGTTGCAGTGGGTC-GGATTGAAACTACAATGACGAATCTTATCTCTCTG
1 AAGTTGCAGTGGGTCAGGA-TAAAACTACAAT-A--AATCTTATCTCCCTG
* * *
73774326 AAGTTGCAGTGGGACAAGATAAAACT---ATAAATCCTATAC-CCCTG
1 AAGTTGCAGTGGGTCAGGATAAAACTACAATAAATCTTAT-CTCCCTG
*
73774370 AAGTTGCAGTGGGTCAGGTTAAAACTACAATAAAAAATCTTATCTCCCTG
1 AAGTTGCAGTGGGTCAGGATAAAACTACAAT---AAATCTTATCTCCCTG
*
73774420 AAATTGCA
1 AAGTTGCA
73774428 ATGGAGTAAG
Statistics
Matches: 152, Mismatches: 25, Indels: 39
0.70 0.12 0.18
Matches are distributed among these distances:
43 2 0.01
44 66 0.43
45 2 0.01
46 1 0.01
47 4 0.03
48 1 0.01
49 2 0.01
50 51 0.34
51 21 0.14
52 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (47 bp):
AAGTTGCAGTGGGTCAGGATAAAACTACAATAAATCTTATCTCCCTG
Found at i:73775197 original size:21 final size:21
Alignment explanation
Indices: 73775173--73775216 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
73775163 AGAAAAAAAG
73775173 AGAAATTTCAAAAACAAAGGT
1 AGAAATTTCAAAAACAAAGGT
*
73775194 AGAAGTTTCAAAAACAAAGGT
1 AGAAATTTCAAAAACAAAGGT
73775215 AG
1 AG
73775217 TCTATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (21 bp):
AGAAATTTCAAAAACAAAGGT
Found at i:73778829 original size:18 final size:18
Alignment explanation
Indices: 73778806--73778842 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
73778796 TTTTTTTTTC
73778806 ATTTATTCAAGAGCTAAA
1 ATTTATTCAAGAGCTAAA
73778824 ATTTATTCAAGAGCTAAA
1 ATTTATTCAAGAGCTAAA
73778842 A
1 A
73778843 AACTTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (18 bp):
ATTTATTCAAGAGCTAAA
Found at i:73784908 original size:9 final size:9
Alignment explanation
Indices: 73784894--73784988 Score: 127
Period size: 9 Copynumber: 10.6 Consensus size: 9
73784884 ATAAGTATAA
73784894 AATTAACCG
1 AATTAACCG
73784903 AATTAACCG
1 AATTAACCG
*
73784912 AATTAATCG
1 AATTAACCG
*
73784921 AATTACCCG
1 AATTAACCG
*
73784930 AATTACCCG
1 AATTAACCG
* *
73784939 AATTACCCA
1 AATTAACCG
*
73784948 AATTAACCA
1 AATTAACCG
*
73784957 AATTAACCA
1 AATTAACCG
73784966 AATTAACCG
1 AATTAACCG
73784975 AATTAACCG
1 AATTAACCG
73784984 AATTA
1 AATTA
73784989 TTTGTATAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 80 1.00
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:73785019 original size:6 final size:6
Alignment explanation
Indices: 73785008--73785054 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
73784998 AATTATATGT
* *
73785008 TTTTTA TTTTTA TTTTTA GTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
73785055 ATTAAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 27 0.77
7 7 0.20
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:73792564 original size:18 final size:19
Alignment explanation
Indices: 73792541--73792585 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
73792531 AATGCAAAGT
*
73792541 AAATGATAATA-ATGAGCA
1 AAATGATAATAGATGAGAA
*
73792559 AAATGAAAATAGTATGAGAA
1 AAATGATAATAG-ATGAGAA
73792579 AAATGAT
1 AAATGAT
73792586 GATTATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 10 0.45
20 12 0.55
ACGTcount: A:0.58, C:0.02, G:0.18, T:0.22
Consensus pattern (19 bp):
AAATGATAATAGATGAGAA
Found at i:73808548 original size:29 final size:29
Alignment explanation
Indices: 73808482--73808572 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
73808472 AAGTCTACAT
* * *
73808482 ACATGCATATGGCCCACTAGG-CCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
73808510 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
73808539 ACATTCATATGGTCCATTTGGCCCGAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
73808568 A-ATTC
1 ACATTC
73808573 CAAGCCATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 22 0.41
29 32 0.59
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Done.