Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 221 of 320
Found at i:73810966 original size:27 final size:27
Alignment explanation
Indices: 73810933--73811139 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
73810923 TAAATTGTGC
*
73810933 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
73810960 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
73810988 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
73811015 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
73811043 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73811070 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
73811098 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73811125 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73811140 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73810997 original size:55 final size:55
Alignment explanation
Indices: 73810933--73811139 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
73810923 TAAATTGTGC
73810933 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
73810988 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
73811043 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
73811098 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
73811140 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73819082 original size:28 final size:28
Alignment explanation
Indices: 73819025--73819176 Score: 238
Period size: 27 Copynumber: 5.5 Consensus size: 28
73819015 TAAATTGTGC
73819025 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGT
*
73819052 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGT
73819080 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGT
*
73819107 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGT
* *
73819135 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGATTGACTATGT
*
73819162 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73819177 GACTTAATAT
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 64 0.55
28 53 0.45
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTGACTATGT
Found at i:73819089 original size:55 final size:55
Alignment explanation
Indices: 73819025--73819176 Score: 268
Period size: 55 Copynumber: 2.8 Consensus size: 55
73819015 TAAATTGTGC
73819025 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
73819080 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
73819135 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
73819177 GACTTAATAT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 93 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73822644 original size:44 final size:43
Alignment explanation
Indices: 73822494--73823261 Score: 282
Period size: 44 Copynumber: 17.0 Consensus size: 43
73822484 TTCTGGCAAG
* *
73822494 TCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGTCACAGA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGT-ACAAA
* * * **
73822538 TATTATCTCCCTAAAGTTGTAGTGGAGTAGATCGAAGATAGCAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TA-CAAA
* * * *
73822583 TTTTATCTCTCC-GAAGTTGCAGTAGAGCAGATTAAAGCTATAAA
1 TCTTATCTC-CCTAAAGTTGCAGTGGAGCAGATTAAAG-TACAAA
* * * * *
73822627 CCTTATCTCCCTAAAGTTGCAATGAAGCAGGTTAAAAATAGCAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGTA-CAAA
* * * * * * * *
73822672 TCTTATTTTCTTGAGGCTACAGTGGAACAGATTAAGGCTATCAAGTTACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-T-----TA--AAG-TACAAA
* * * * * *
73822724 TTTTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGTTACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TACAAA
* * * * * * * * *
73822768 TTTTATCTCCTTGAAGTTGCTGTGAAGCAGACTGAAGATGGCGAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-T-ACAAA
* * ** *
73822813 TCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTA-AAGTACAAA
* * * * *
73822857 CCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TACAAA
* * ** * *
73822901 TCTTATCTTCCTGAAGTTGCAAAGGAGCAAATTAAAGATAGAAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TA-CAAA
* * * * **
73822946 TCTTATTTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TA-CAAA
* * * * * *
73822991 TCTTATCTCTCTGAAGTCGCAGTAGAGCAAATTAAAGCTATAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TACAAA
* ** * *
73823035 CCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAATTACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG--------TACAAA
* * * * * * **
73823086 TCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TA-CAAA
* * * * * * *
73823131 TATTATCTCTCTAAAGTTACAGTAGAGCATATTAAAACTATAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGTACAAA
* * * * * *
73823175 CCTTATCTCCTTGAAGTTGCAGCGGA-CTAGATTGAAACTACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGC-AGATT-AAAGTACAAA
* * *
73823219 TCTTATCTCCCTGAAA-TTGTAGTGGAGTAGATTGAAACTACAA
1 TCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATT-AAAGTACAA
73823262 CTCCTCGAAG
Statistics
Matches: 533, Mismatches: 160, Indels: 62
0.71 0.21 0.08
Matches are distributed among these distances:
43 5 0.01
44 268 0.50
45 187 0.35
46 8 0.02
50 1 0.00
51 35 0.07
52 27 0.05
53 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (43 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTACAAA
Found at i:73822668 original size:89 final size:89
Alignment explanation
Indices: 73822489--73822677 Score: 209
Period size: 89 Copynumber: 2.1 Consensus size: 89
73822479 AGTCATTCTG
* * * * *
73822489 GCAAGTCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGTCACAGATATTATCTCCCTAAAG
1 GCAAATCTTATCTCTCCAAAGTTGCAGTAGAGCAGATTAAAGTCACAAACATTATCTCCCTAAAG
* * * * * *
73822554 TTGTAGTGGAGTAGATCGAAGATA
66 TTGCAATGAAGCAGATCAAAAATA
* * * *
73822578 GCAAATTTTATCTCTCCGAAGTTGCAGTAGAGCAGATTAAAG-CTATAAACCTTATCTCCCTAAA
1 GCAAATCTTATCTCTCCAAAGTTGCAGTAGAGCAGATTAAAGTC-ACAAACATTATCTCCCTAAA
* *
73822642 GTTGCAATGAAGCAGGTTAAAAATA
65 GTTGCAATGAAGCAGATCAAAAATA
73822667 GCAAATCTTAT
1 GCAAATCTTAT
73822678 TTTCTTGAGG
Statistics
Matches: 81, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
88 1 0.01
89 80 0.99
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (89 bp):
GCAAATCTTATCTCTCCAAAGTTGCAGTAGAGCAGATTAAAGTCACAAACATTATCTCCCTAAAG
TTGCAATGAAGCAGATCAAAAATA
Found at i:73822939 original size:133 final size:133
Alignment explanation
Indices: 73822726--73822969 Score: 328
Period size: 133 Copynumber: 1.8 Consensus size: 133
73822716 GTTACAAATT
* * * ***
73822726 TTATCTCCCTGAAGTTGAAGTGGAGCAGGTTGAAGTTACAAGTTTTATCTCCTTGAAGTTGCTGT
1 TTATCTCCCTAAAGTTGAAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCTTGAAGTTGCAAA
* * * **
73822791 GAAGCAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTA
66 GAAGCAAACTAAAGATAGAAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTA
73822856 ACC
131 ACC
*
73822859 TTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATACAAGTCTTATCTTCC-TGAAGTTGCAA
1 TTATCTCCCTAAAGTTGAAGTGGAGCAGGTTGAAGATACAAGTCTTATC-TCCTTGAAGTTGCAA
* * * *
73822923 AGGAGCAAATTAAAGATAGAAAATCTTATTTCCTTGAAGTTGCAGTG
65 AGAAGCAAACTAAAGATAGAAAATCTTATCTCCCTGAAGTTGCAGTG
73822970 GAGTAGATCG
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
133 91 0.97
134 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (133 bp):
TTATCTCCCTAAAGTTGAAGTGGAGCAGGTTGAAGATACAAGTCTTATCTCCTTGAAGTTGCAAA
GAAGCAAACTAAAGATAGAAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTACAACCACTA
ACC
Found at i:73822965 original size:45 final size:45
Alignment explanation
Indices: 73822901--73823027 Score: 116
Period size: 45 Copynumber: 2.8 Consensus size: 45
73822891 AAGATACAAG
73822901 TCTTATCTTCC-TGAAGTTGCAAAGGAGCAAATTAAAGATAGAAAA
1 TCTTAT-TTCCTTGAAGTTGCAAAGGAGCAAATTAAAGATAGAAAA
** * * ** *
73822946 TCTTATTTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAA
1 TCTTATTTCCTTGAAGTTGCAAAGGAGCAAATTAAAGATAGAAAA
* * *
73822991 TCTTATCT-CTCTGAAGTCGCAGTA-GAGCAAATTAAAG
1 TCTTATTTCCT-TGAAGTTGCA-AAGGAGCAAATTAAAG
73823028 CTATAAACCT
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
44 6 0.09
45 58 0.91
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.29
Consensus pattern (45 bp):
TCTTATTTCCTTGAAGTTGCAAAGGAGCAAATTAAAGATAGAAAA
Found at i:73823050 original size:89 final size:90
Alignment explanation
Indices: 73822770--73823066 Score: 263
Period size: 89 Copynumber: 3.3 Consensus size: 90
73822760 GTTACAAGTT
* * * * *
73822770 TTATC-TCCTTGAAGTTGCTGTGAAGCAGA-CTGAAGATGGCGAATCTTATCTCCCTGAAGTTGC
1 TTATCTTCC-TGAAGTTGCAGTGGAGCAGATC-GAAGATAGCAAATCTTATCTCTCTGAAGTTGC
* *
73822833 AGT-GAAGCAGATTACAA-CCACT-AACC
64 AGTAG-AGCAAATTA-AAGCTACTAAACC
* * * * * *
73822859 TTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGATA-CAAGTCTTATCT-TCCTGAAGTTGCA
1 TTATCTTCCTGAAGTTGCAGTGGAGCAGATCGAAGATAGCAAATCTTATCTCT-CTGAAGTTGCA
* * ** *
73822922 -AAGGAGCAAATTAAAGATAGAAAATC
65 GTA-GAGCAAATTAAAGCTACTAAACC
* *
73822948 TTAT-TTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTGAAGTCGCA
1 TTATCTTCC-TGAAGTTGCAGTGGAGCAGATCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCA
73823012 GTAGAGCAAATTAAAGCTA-TAAACC
65 GTAGAGCAAATTAAAGCTACTAAACC
* *
73823037 TTATCTTTCTGAAGTTGCAGTGGAGTAGAT
1 TTATCTTCCTGAAGTTGCAGTGGAGCAGAT
73823067 TAAAGCTACA
Statistics
Matches: 165, Mismatches: 31, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
87 2 0.01
88 33 0.20
89 87 0.53
90 41 0.25
91 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (90 bp):
TTATCTTCCTGAAGTTGCAGTGGAGCAGATCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAG
TAGAGCAAATTAAAGCTACTAAACC
Found at i:73823127 original size:140 final size:140
Alignment explanation
Indices: 73822943--73823217 Score: 401
Period size: 140 Copynumber: 2.0 Consensus size: 140
73822933 TAAAGATAGA
** * * * *
73822943 AAATCTTATTTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTGAAGT
1 AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
* * * * *
73823008 CGCAGTAGAGCAAATTAAAGCTATAAACCTTATCT-TTCTGAAGTTGCAGTGGAGTAGATT-AAA
66 CACAGTAGAGCAAATTAAAACTATAAACCTTATCTCCT-TGAAGTTGCAGCGGACTAGATTGAAA
73823071 GCTACAAATTAC
130 -CTACAAATTAC
73823083 AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
1 AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
* *
73823148 TACAGTAGAGCATATTAAAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTGAAAC
66 CACAGTAGAGCAAATTAAAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTGAAAC
73823213 TACAA
131 TACAA
73823218 GTCTTATCTC
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
140 116 0.97
141 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30
Consensus pattern (140 bp):
AAATCTTAACTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAAATATTATCTCTCTAAAGT
CACAGTAGAGCAAATTAAAACTATAAACCTTATCTCCTTGAAGTTGCAGCGGACTAGATTGAAAC
TACAAATTAC
Found at i:73824060 original size:43 final size:42
Alignment explanation
Indices: 73823979--73824060 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
73823969 GGTCTTTGAT
* *
73823979 TTTATTTTCTTTTTCGAAACTATTTATATACACATATATCTC
1 TTTATTTTCTTTTTCAAAACCATTTATATACACATATATCTC
* * * *
73824021 TTTATTTTCTTTTTTTAAAACCATTTCTATATATATATAT
1 TTTATTTTC-TTTTTCAAAACCATTTATATACACATATAT
73824061 TAAAAAGAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 9 0.27
43 24 0.73
ACGTcount: A:0.29, C:0.13, G:0.01, T:0.56
Consensus pattern (42 bp):
TTTATTTTCTTTTTCAAAACCATTTATATACACATATATCTC
Found at i:73824681 original size:3 final size:3
Alignment explanation
Indices: 73824673--73824744 Score: 108
Period size: 3 Copynumber: 24.0 Consensus size: 3
73824663 CTTAACATTG
* * *
73824673 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAC TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
73824721 TAT TAT TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
73824745 ATTTCTTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:73827180 original size:21 final size:20
Alignment explanation
Indices: 73827155--73827219 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
73827145 TAGCCTTCGG
73827155 GCTTCCGTTTAGAACTTGTGT
1 GCTTCCGTTTAG-ACTTGTGT
* * *
73827176 GCTTCAG-TTAGCCTT-TGG
1 GCTTCCGTTTAGACTTGTGT
73827194 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAG-ACTTGTGT
*
73827215 ACTTC
1 GCTTC
73827220 AGTTAGCCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 8 0.24
19 7 0.21
20 7 0.21
21 12 0.35
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGACTTGTGT
Found at i:73827185 original size:39 final size:39
Alignment explanation
Indices: 73827137--73827276 Score: 190
Period size: 39 Copynumber: 3.6 Consensus size: 39
73827127 GCTCTGATGA
* *
73827137 GCTTTAGTTAGCCTTCGGGCTTCCGTTTAGAACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
73827176 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * * *
73827215 ACTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACCTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
73827254 GCTTCAGCTAGACTTTGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
73827277 AGATCACGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:73827992 original size:13 final size:13
Alignment explanation
Indices: 73827969--73828002 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
73827959 AGTTTTTTTT
73827969 AAATAATAATAATA
1 AAATAA-AATAATA
73827983 AAATAAAATAATA
1 AAATAAAATAATA
73827996 AAATAAA
1 AAATAAA
73828003 TTCTAGAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAAAATAATA
Found at i:73834168 original size:28 final size:28
Alignment explanation
Indices: 73834100--73834158 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
73834090 GAAATTGAGG
73834100 ATAAACGAGGAAAAGAGAAAATTTCGGA
1 ATAAACGAGGAAAAGAGAAAATTTCGGA
73834128 ATAAACGAGGAAAAGAGAAAATTTCGGA
1 ATAAACGAGGAAAAGAGAAAATTTCGGA
73834156 ATA
1 ATA
73834159 GTTCTAGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.54, C:0.07, G:0.24, T:0.15
Consensus pattern (28 bp):
ATAAACGAGGAAAAGAGAAAATTTCGGA
Found at i:73834477 original size:20 final size:20
Alignment explanation
Indices: 73834438--73834488 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
73834428 TGTGTTTACT
* *
73834438 TTCCGTTTAGCTCTTATGAGC
1 TTCCG-TTAACTCATATGAGC
*
73834459 TTCCGTTAACTCATATGAGT
1 TTCCGTTAACTCATATGAGC
*
73834479 TTCAGTTAAC
1 TTCCGTTAAC
73834489 CCTTTTGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (20 bp):
TTCCGTTAACTCATATGAGC
Found at i:73834634 original size:39 final size:39
Alignment explanation
Indices: 73834517--73834640 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
73834507 CAGCTCTGAT
*
73834517 GGGCTTCCGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
1 GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
* * *
73834556 GGGATTATGTTTAGCACTTGTGTACTTCAGTTAGCCTTC
1 GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
* ** *
73834595 GGGCTTCTGTTTAGCACTTATGTGCTTCAACTAGACTTC
1 GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
73834634 GGGCTTC
1 GGGCTTC
73834641 AGAACACGAT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.39
Consensus pattern (39 bp):
GGGCTTCTGTTTAGCACTTGTGTGCTTCAGTTAGCCTTC
Found at i:73835357 original size:13 final size:13
Alignment explanation
Indices: 73835333--73835367 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
73835323 GAGTTTTTTT
73835333 AAAATAATAATAAA
1 AAAATAA-AATAAA
73835347 AAAATAAAATAAA
1 AAAATAAAATAAA
73835360 AAAATAAA
1 AAAATAAA
73835368 TTCCGGAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:73841632 original size:17 final size:17
Alignment explanation
Indices: 73841606--73841638 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73841596 TTATTATAAT
*
73841606 TGTGTGTATATATTATG
1 TGTGTATATATATTATG
73841623 TGTGTATATATATTAT
1 TGTGTATATATATTAT
73841639 ATGCATATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
TGTGTATATATATTATG
Found at i:73845155 original size:46 final size:46
Alignment explanation
Indices: 73845085--73845406 Score: 395
Period size: 46 Copynumber: 7.0 Consensus size: 46
73845075 TGACATAGTG
* * * *
73845085 TCTTTCAACTATAGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-CATTTTCATATCAGGTTGCCATGGTA
* * * *** *
73845131 TCATTCAACCATGGTCTTATTCATTTCCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTA-CCATTTTCATATCAGGTTGCCATGGTA
* *
73845178 TCTTTCAACCATGGTCTTACACA-TTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-CATTTTCATATCAGGTTGCCATGGTA
73845224 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-CATTTTCATATCAGGTTGCCATGGTA
*
73845270 TCTTTCAACCATGGTCTTA-CACGTTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACCA-TTTTCATATCAGGTTGCCATGGTA
*
73845316 TCTTTCAACCATGGTCTTACAAGTTTT-ATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACCA-TTTTCATATCAGGTTGCCATGGTA
*
73845362 TCTTTCAACCATGGTCTTACAAGTTTT-ATATCAGGTTGCCATGGT
1 TCTTTCAACCATGGTCTTACCA-TTTTCATATCAGGTTGCCATGGT
73845407 CTTACACATT
Statistics
Matches: 253, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
44 2 0.01
46 211 0.83
47 40 0.16
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACCATTTTCATATCAGGTTGCCATGGTA
Found at i:73845367 original size:138 final size:140
Alignment explanation
Indices: 73845085--73845406 Score: 438
Period size: 138 Copynumber: 2.3 Consensus size: 140
73845075 TGACATAGTG
* * * * * *
73845085 TCTTTCAACTATAGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCATTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACAGTTTCATATCAGGTTGCCATGGTATCATTCAACCATGGTCTT
** * * *
73845149 ATTCATTTCCCCGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
66 ACACATTTCCACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
73845214 TGCCATGGTA
131 TGCCATGGTA
*
73845224 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACAGTTTCATATCAGGTTGCCATGGTATCATTCAACCATGGTCTT
* * * * *
73845288 ACACGTTT-CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA-AGTTTTATATCAGG
66 ACACATTTCCACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACG
73845351 TTGCCATGGTA
130 TTGCCATGGTA
*
73845362 TCTTTCAACCATGGTCTTACA-AGTTTTATATCAGGTTGCCATGGT
1 TCTTTCAACCATGGTCTTACACAGTTTCATATCAGGTTGCCATGGT
73845407 CTTACACATT
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
137 2 0.01
138 103 0.63
139 58 0.36
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (140 bp):
TCTTTCAACCATGGTCTTACACAGTTTCATATCAGGTTGCCATGGTATCATTCAACCATGGTCTT
ACACATTTCCACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
TGCCATGGTA
Found at i:73847577 original size:11 final size:11
Alignment explanation
Indices: 73847561--73847612 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
73847551 TATACTAAAT
73847561 AAATAATAATA
1 AAATAATAATA
*
73847572 AAATAAT-ATT
1 AAATAATAATA
* *
73847582 AAATATCTCATA
1 AAATA-ATAATA
*
73847594 AAATATTAATA
1 AAATAATAATA
73847605 AAATAATA
1 AAATAATA
73847613 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:73849306 original size:21 final size:21
Alignment explanation
Indices: 73849277--73849324 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
73849267 TGGGGAGACT
*
73849277 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
73849298 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
73849319 ACTCCA
1 ACTCCA
73849325 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:73849554 original size:25 final size:26
Alignment explanation
Indices: 73849517--73849569 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
73849507 TCAAACATGC
73849517 ATTTAGGTCAATTTAACC-CTAGGGGT
1 ATTTAGGTCAATTT-ACCACTAGGGGT
*
73849543 ATTTCGGT-AATTTACCTACTAGGGGT
1 ATTTAGGTCAATTTACC-ACTAGGGGT
73849569 A
1 A
73849570 AAATAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (26 bp):
ATTTAGGTCAATTTACCACTAGGGGT
Found at i:73851115 original size:25 final size:26
Alignment explanation
Indices: 73851050--73851156 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
73851040 TGAAATTCCC
* *
73851050 ATCATGCAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
73851076 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73851102 ATCATGGAA-TTTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73851127 GTTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73851153 ATCA
1 ATCA
73851157 ATTTGTATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
25 21 0.30
26 49 0.70
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73856065 original size:12 final size:12
Alignment explanation
Indices: 73856048--73856072 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73856038 GCCTCGACCA
73856048 CGACCACGGCCT
1 CGACCACGGCCT
73856060 CGACCACGGCCT
1 CGACCACGGCCT
73856072 C
1 C
73856073 TTCCCCGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.52, G:0.24, T:0.08
Consensus pattern (12 bp):
CGACCACGGCCT
Found at i:73859245 original size:26 final size:25
Alignment explanation
Indices: 73859209--73859316 Score: 144
Period size: 26 Copynumber: 4.2 Consensus size: 25
73859199 TGAAATTCCC
73859209 ATCATGGAACATTTACCTATATCATT
1 ATCATGGAACATTTACCTA-ATCATT
*
73859235 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-TCATT
*
73859261 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAT-CATT
* *
73859287 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-TCATT
73859313 ATCA
1 ATCA
73859317 ATTTGTATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
25 1 0.01
26 71 0.99
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.34
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAATCATT
Found at i:73859292 original size:52 final size:52
Alignment explanation
Indices: 73859209--73859316 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
73859199 TGAAATTCCC
73859209 ATCATGGAACATTTACCTATATCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTATATCATTATCATGGAACATTTACCTAACCCATT
* *
73859261 ATCATGGAATATTTACCTA-ATCCATTGTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTATAT-CATTATCATGGAACATTTACCTAACCCATT
73859313 ATCA
1 ATCA
73859317 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
51 2 0.04
52 51 0.96
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
ATCATGGAACATTTACCTATATCATTATCATGGAACATTTACCTAACCCATT
Found at i:73861060 original size:13 final size:13
Alignment explanation
Indices: 73861042--73861066 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73861032 TCAATTATGC
73861042 TAATTTCATTCAA
1 TAATTTCATTCAA
73861055 TAATTTCATTCA
1 TAATTTCATTCA
73861067 TACAAATACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTTCATTCAA
Found at i:73861197 original size:20 final size:20
Alignment explanation
Indices: 73861172--73861213 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
73861162 TATCGGTAAG
73861172 AGCATGGCTAACTCTGTCAT
1 AGCATGGCTAACTCTGTCAT
73861192 AGCATGGCTAACTCTGTCAT
1 AGCATGGCTAACTCTGTCAT
73861212 AG
1 AG
73861214 TCTGGTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (20 bp):
AGCATGGCTAACTCTGTCAT
Found at i:73864982 original size:20 final size:20
Alignment explanation
Indices: 73864946--73864985 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73864936 TCCTATTGTT
73864946 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
73864966 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
73864986 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:73866985 original size:40 final size:40
Alignment explanation
Indices: 73866887--73867188 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
73866877 TCCTCGTTCA
* * * * *
73866887 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
73866926 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73866966 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73867006 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73867046 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
73867085 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
73867125 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
73867165 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
73867189 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
39 76 0.32
40 154 0.65
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:73866988 original size:79 final size:79
Alignment explanation
Indices: 73866887--73867188 Score: 374
Period size: 79 Copynumber: 3.8 Consensus size: 79
73866877 TCCTCGTTCA
* * * * *
73866887 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACTTAACCCGGAT
*
73866951 TTAACAACTCGCACG
65 TTAATAACTCGCACG
* *
73866966 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACTTAACCCGGAT
73867031 TTAATAACTCGCACG
65 TTAATAACTCGCACG
*
73867046 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACTTAACCCGGATT
* * *
73867111 TAGTATCTCGCACA
66 TAATAACTCGCACG
* * * * * * * *
73867125 AAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGA-CTTAACCCGGATTTAATAACTCA-CACGAATGCCTTCGGGACTTAACCCGGA
73867189 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
79 110 0.55
80 86 0.43
81 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACTTAACCCGGATT
TAATAACTCGCACG
Found at i:73867064 original size:119 final size:119
Alignment explanation
Indices: 73866885--73867188 Score: 387
Period size: 119 Copynumber: 2.5 Consensus size: 119
73866875 GCTCCTCGTT
* * * *
73866885 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
73866950 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
66 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * *
73867004 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTC-GGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
* ** *
73867068 ATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
65 ATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * * * * *
73867123 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACAATGCCTTCGGGACATAACCCG
73867187 GA
64 GA
73867189 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
118 3 0.02
119 132 0.82
120 25 0.16
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:73874974 original size:40 final size:40
Alignment explanation
Indices: 73874876--73875178 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
73874866 TCCTCGTTCA
* * * * *
73874876 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
73874915 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73874955 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73874995 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73875035 AATGCCTTCAGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
73875075 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
73875115 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
73875155 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
73875179 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.16
40 193 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:73876793 original size:44 final size:43
Alignment explanation
Indices: 73876697--73877206 Score: 320
Period size: 44 Copynumber: 11.7 Consensus size: 43
73876687 TTTTAACCCA
* ** * *
73876697 CTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTG
1 CTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTG
*
73876740 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTG
* ** * *
73876784 CTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTG
1 CTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTG
* *
73876827 CTCCGCTGTAATCTCAGGGAGATAAGATCTCCGGCTTCAATCTG
1 CTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTG
* ** * *
73876871 CTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTG
1 CTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTCAATCTG
* * *
73876914 CTCCGCTATAATCTCAGGGAGATAAGATCTCCGGCTTCAATCTG
1 CTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTG
* * ***
73876958 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTTGGTCTG
1 CTCCACTGTAA-CTCAGGGAGATAAGATCT---CTGGCTTCAATCTG
* * * *
73877004 TTCCACTGTAATCTCAGGGAGATAAGA-C-CT-GATGT-GATCTA
1 CTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCT-TCAATCTG
* * * *** *
73877045 CTCTACTGTAACTTCAGAGAGATAAGATAAT-TTATTTTAATCTG
1 CTCCACTGTAAC-TCAGGGAGATAAGAT-CTCTGGCTTCAATCTG
* * * * * *
73877089 CTCCACTGTAACTTCAGGGAGAT-TGGTTTATCGACTTCAATTTG
1 CTCCACTGTAAC-TCAGGGAGATAAGATCTCT-GGCTTCAATCTG
* * * * *
73877133 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTTAGTTTG
1 CTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTCAATCTG
* * * *
73877177 CCCCACTGTGACTTCAGGGGGACAAGATCT
1 CTCCACTGTAAC-TCAGGGAGATAAGATCT
73877207 GTAATTTCCA
Statistics
Matches: 364, Mismatches: 80, Indels: 45
0.74 0.16 0.09
Matches are distributed among these distances:
40 1 0.00
41 28 0.08
42 2 0.01
43 100 0.27
44 194 0.53
45 7 0.02
46 32 0.09
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (43 bp):
CTCCACTGTAACTCAGGGAGATAAGATCTCTGGCTTCAATCTG
Found at i:73876843 original size:87 final size:87
Alignment explanation
Indices: 73876697--73877030 Score: 544
Period size: 87 Copynumber: 3.8 Consensus size: 87
73876687 TTTTAACCCA
73876697 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
*
73876762 TAAGATCTCTGGCTTCAATCTG
66 TAAGATCTCCGGCTTCAATCTG
73876784 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
73876849 TAAGATCTCCGGCTTCAATCTG
66 TAAGATCTCCGGCTTCAATCTG
*
73876871 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTATAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
73876936 TAAGATCTCCGGCTTCAATCTG
66 TAAGATCTCCGGCTTCAATCTG
* * * * * * *
73876958 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGG
1 CTCCACTGTAACTTCAGGGAGATAGGATAGTG----TCTTCGATCTGCTCCGCTGTAATCTCAGG
73877022 GAGATAAGA
62 GAGATAAGA
73877031 CCTGATGTGA
Statistics
Matches: 233, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
86 2 0.01
87 198 0.85
90 33 0.14
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (87 bp):
CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTCCGGCTTCAATCTG
Found at i:73877055 original size:174 final size:172
Alignment explanation
Indices: 73876696--73877073 Score: 528
Period size: 174 Copynumber: 2.2 Consensus size: 172
73876686 ATTTTAACCC
*
73876696 ACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAG
1 ACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTATAATCTCAGGGAG
* * * *
73876761 ATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCT
66 ATAAGATCTCCGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAATGTCTTCGATCT
* *
73876826 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCCGGCTTCAATCT
131 GCTCCACTGTAATCTCAGGGAGATAAGA--TCCGGATTCAATCT
*
73876870 GCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTATAATCTCAGGGAG
1 ACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTATAATCTCAGGGAG
*
73876935 ATAAGATCTCCGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTTG
66 ATAAGATCTCCGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA--T--AATGTCTTCG
* * * *
73876999 GTCTGTTCCACTGTAATCTCAGGGAGATAAGA-CCTGATGT-GATCT
127 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCGGAT-TCAATCT
* * *
73877044 ACTCTACTGTAACTTCAGAGAGATAAGATA
1 ACTCCACTGTAACTTCAGGGAGATAGGATA
73877074 ATTTATTTTA
Statistics
Matches: 182, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
174 144 0.79
175 1 0.01
176 1 0.01
177 34 0.19
178 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (172 bp):
ACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTATAATCTCAGGGAG
ATAAGATCTCCGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAATGTCTTCGATCT
GCTCCACTGTAATCTCAGGGAGATAAGATCCGGATTCAATCT
Found at i:73877504 original size:88 final size:88
Alignment explanation
Indices: 73877358--73877863 Score: 809
Period size: 88 Copynumber: 5.8 Consensus size: 88
73877348 AGCTCCAATG
** * *
73877358 CAACCGATGGAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATC
1 CAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
73877421 TTTTGTCTTCAACCAGCTCTATCA
65 TTTTGTCTTCAACCAGCTCTATCA
* * *
73877445 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGAAAGGCAAGATCC
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
73877510 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCTATCA
*
73877533 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
73877598 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
* *
73877621 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAAGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
* *
73877686 TTTGTCTTCAACCAGTTCCATCA
66 TTTGTCTTCAACCAGCTCTATCA
* * *
73877709 TAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
73877774 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
* * * *
73877797 CAACCGAAAGAGGCAAGGTTTATGTCTTCGATCTGCTTCACTATAAATGCAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
73877862 TT
66 TT
73877864 AACTTCATTG
Statistics
Matches: 385, Mismatches: 32, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
86 5 0.01
87 17 0.04
88 363 0.94
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (88 bp):
CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
TTTGTCTTCAACCAGCTCTATCA
Found at i:73882175 original size:19 final size:20
Alignment explanation
Indices: 73882146--73882194 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
73882136 CACTTCGTGA
* *
73882146 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAGATGCATG
*
73882165 CAATGTAATGCAGATGCATG
1 AAATGTAATGCAGATGCATG
73882185 AAATG-AATGC
1 AAATGTAATGC
73882195 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAGATGCATG
Found at i:73885568 original size:20 final size:20
Alignment explanation
Indices: 73885532--73885571 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73885522 TCCTATTGTT
73885532 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
73885552 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
73885572 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:73895796 original size:18 final size:16
Alignment explanation
Indices: 73895773--73895808 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
73895763 GTTTAAAATT
73895773 TTTAATTAATTAAATTTA
1 TTTAATTAA--AAATTTA
73895791 TTTAATTAAAAATTTA
1 TTTAATTAAAAATTTA
73895807 TT
1 TT
73895809 CTCATCCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
18 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAATTAAAAATTTA
Found at i:73896874 original size:19 final size:18
Alignment explanation
Indices: 73896850--73896898 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
73896840 TTTTATTATC
*
73896850 TTTAAATTATTGTTGAAAT
1 TTTAAATTATT-TTAAAAT
73896869 TTTAAATTGA-TTTAAAAT
1 TTTAAATT-ATTTTAAAAT
*
73896887 TTTAAAATATTT
1 TTTAAATTATTT
73896899 AAAGTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.04
18 15 0.58
19 9 0.35
20 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTAAATTATTTTAAAAT
Found at i:73896900 original size:17 final size:18
Alignment explanation
Indices: 73896865--73896901 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73896855 ATTATTGTTG
*
73896865 AAATTTTAAATTGATTTA
1 AAATTTTAAAATGATTTA
73896883 AAATTTTAAAAT-ATTTA
1 AAATTTTAAAATGATTTA
73896900 AA
1 AA
73896902 GTGAATCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
AAATTTTAAAATGATTTA
Found at i:73897338 original size:10 final size:10
Alignment explanation
Indices: 73897323--73897356 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
73897313 TATTTCAAAG
73897323 TTTGTCCATC
1 TTTGTCCATC
73897333 TTTGTCCATC
1 TTTGTCCATC
*
73897343 TTTGTTCATC
1 TTTGTCCATC
73897353 TTTG
1 TTTG
73897357 AGTTCTTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.09, C:0.24, G:0.12, T:0.56
Consensus pattern (10 bp):
TTTGTCCATC
Found at i:73898053 original size:15 final size:15
Alignment explanation
Indices: 73898033--73898066 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
73898023 AAAATAAAAT
73898033 AATTTATTATATTTA
1 AATTTATTATATTTA
* *
73898048 AATTTATTTTATTTG
1 AATTTATTATATTTA
73898063 AATT
1 AATT
73898067 AAAAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
AATTTATTATATTTA
Found at i:73898554 original size:22 final size:22
Alignment explanation
Indices: 73898528--73898578 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
73898518 AAATGGTAAC
* *
73898528 AAAATAGGAAGAAAACAATAAG
1 AAAATAGCAAGAAAACAACAAG
**
73898550 AAAATAGCATTAAAACAACAAG
1 AAAATAGCAAGAAAACAACAAG
73898572 AAAATAG
1 AAAATAG
73898579 TAGTTCCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.67, C:0.08, G:0.14, T:0.12
Consensus pattern (22 bp):
AAAATAGCAAGAAAACAACAAG
Found at i:73899479 original size:25 final size:23
Alignment explanation
Indices: 73899427--73899481 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
73899417 TATAAATAGT
73899427 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
73899450 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
73899475 AATAGTG
1 AATAGTG
73899482 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:73899600 original size:22 final size:24
Alignment explanation
Indices: 73899542--73899686 Score: 84
Period size: 25 Copynumber: 5.8 Consensus size: 24
73899532 ATAGATATAA
* *
73899542 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
73899566 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
73899590 -AAAATATATACATAAGATAACATGT
1 AAAAATATATACATAATAT-A-ATGT
*
73899615 AGAAAAAAATATATAAATAATATAGTAT-T
1 ----AAAAATATATACATAATATA--ATGT
* *
73899644 AAAGATATATACATAAAAT-A-GT
1 AAAAATATATACATAATATAATGT
* *
73899666 ATAATATATATACGTAATATA
1 A-AAAATATATACATAATATA
73899687 GAATTTAGAA
Statistics
Matches: 94, Mismatches: 14, Indels: 25
0.71 0.11 0.19
Matches are distributed among these distances:
22 19 0.20
23 16 0.17
24 3 0.03
25 36 0.38
29 2 0.02
30 18 0.19
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:73899621 original size:77 final size:80
Alignment explanation
Indices: 73899507--73899686 Score: 199
Period size: 77 Copynumber: 2.3 Consensus size: 80
73899497 ATGTTAAGAT
* * * * * *
73899507 ATATATAATATATACATATGTATAAATAGATATAAAAAAATATGTACATAATATAGTGTAAAAAA
1 ATATAAAATATATACATAAGTATAAATAGATAGAAAAAAATATATAAATAATATAGTATAAAAAA
*
73899572 TACATACATAATATA
66 TACATACATAAAATA
* *
73899587 AT-TAAAATATATACATAAG-ATAACAT-G-TAGAAAAAAATATATAAATAATATAGTATTAAAG
1 ATATAAAATATATACATAAGTATAA-ATAGATAGAAAAAAATATATAAATAATATAGTATAAAAA
*
73899648 ATATATACATAAAATA
65 ATACATACATAAAATA
* * *
73899664 GTATAATATATATACGTAA-TATA
1 ATATAAAATATATACATAAGTATA
73899687 GAATTTAGAA
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
77 43 0.51
78 22 0.26
79 17 0.20
80 2 0.02
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (80 bp):
ATATAAAATATATACATAAGTATAAATAGATAGAAAAAAATATATAAATAATATAGTATAAAAAA
TACATACATAAAATA
Found at i:73899651 original size:25 final size:25
Alignment explanation
Indices: 73899546--73899753 Score: 107
Period size: 23 Copynumber: 8.6 Consensus size: 25
73899536 ATATAAAAAA
* * * *
73899546 ATATGTACATAATATAGTGTAAAAA
1 ATATATACATAATATAGTATTAAAG
*
73899571 ATACATACATAATATA--ATTAAA-
1 ATATATACATAATATAGTATTAAAG
* ** *
73899593 ATATATACATAAGATAACATGTAGAAAAAA
1 ATATATACAT-A-AT-ATA-GTA-TTAAAG
*
73899623 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
73899648 ATATATACATAAAATAGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
73899671 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
73899695 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
73899717 AATATATATATAATATAATATTAAA-
1 -ATATATACATAATATAGTATTAAAG
73899742 A-ATATA-ATAATA
1 ATATATACATAATA
73899754 ACAAAAAAAG
Statistics
Matches: 141, Mismatches: 28, Indels: 31
0.70 0.14 0.16
Matches are distributed among these distances:
21 1 0.01
22 17 0.12
23 42 0.30
24 19 0.13
25 37 0.26
26 7 0.05
27 2 0.01
28 3 0.02
29 4 0.03
30 9 0.06
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:73900265 original size:30 final size:30
Alignment explanation
Indices: 73900229--73900344 Score: 193
Period size: 30 Copynumber: 4.0 Consensus size: 30
73900219 AGGTACAAGT
*
73900229 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
73900259 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
73900289 GGT-GTGGAGCAAGTGTGG-TAGTGGAGT-
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
73900316 TGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGT
73900345 TGGAGGTAGC
Statistics
Matches: 82, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
27 2 0.02
28 24 0.29
29 24 0.29
30 32 0.39
ACGTcount: A:0.20, C:0.06, G:0.49, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:73900331 original size:57 final size:59
Alignment explanation
Indices: 73900233--73900344 Score: 192
Period size: 57 Copynumber: 1.9 Consensus size: 59
73900223 ACAAGTGGTG
73900233 GTGGAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
1 GTGGAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
* *
73900292 GTGGAGCAAGTGTGG-TAGTGGAGT-TGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 GTGGAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
73900345 TGGAGGTAGC
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 28 0.55
58 8 0.16
59 15 0.29
ACGTcount: A:0.21, C:0.06, G:0.48, T:0.25
Consensus pattern (59 bp):
GTGGAGCAAGTGTGGCTAATGGAGTAGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGT
Found at i:73900903 original size:21 final size:20
Alignment explanation
Indices: 73900873--73900916 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
73900863 ATTGATATCA
73900873 TCAATCAGCTCCACTGCAACT
1 TCAATCAGCTCC-CTGCAACT
* * *
73900894 TCAATTAGCTTCCTGTAACT
1 TCAATCAGCTCCCTGCAACT
73900914 TCA
1 TCA
73900917 GGGATATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (20 bp):
TCAATCAGCTCCCTGCAACT
Found at i:73901120 original size:87 final size:86
Alignment explanation
Indices: 73900985--73901189 Score: 232
Period size: 87 Copynumber: 2.4 Consensus size: 86
73900975 TCCTGAGCTT
* * * *
73900985 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAACATTAAAAACAGAAATTG-AAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACAAAACATT-AAAACAGAAATTGAAAATA
*
73901049 GCTCAGCACGTGAGCCAAGGCTC
64 GCTCAGCACGTGACCCAAGGCTC
** ** *
73901072 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATAT
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACAT-TAAAACAGAAATTGAAAATAG
* * * *
73901137 CTCGGTATGTGACCCGAGGCTC
65 CTCAGCACGTGACCCAAGGCTC
* *
73901159 AACTCACCTCTCGTAATATGAGTTGATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
73901190 GCAAAGCATA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
86 24 0.24
87 76 0.76
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (86 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACATTAAAACAGAAATTGAAAATAGC
TCAGCACGTGACCCAAGGCTC
Found at i:73901291 original size:102 final size:102
Alignment explanation
Indices: 73901127--73901313 Score: 297
Period size: 102 Copynumber: 1.8 Consensus size: 102
73901117 AAAACAGATT
* * *
73901127 TTGAAAATATCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG-
1 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
73901191 CAAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
66 CAAA-CATAAATTGAAAAAAAATAAAAATAAAAATCAA
* *
73901229 TTGAAAATACCTCGGCATGTGATCTGAGGCTCAACTCACCTCTCGCAATAT-AGTTGATTTTTTG
1 TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
73901293 ACAAACATAAATTGAAAAAAA
65 ACAAACATAAATTGAAAAAAA
73901314 GAAATTGAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
101 6 0.08
102 68 0.87
103 4 0.05
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (102 bp):
TTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
CAAACATAAATTGAAAAAAAATAAAAATAAAAATCAA
Found at i:73901399 original size:14 final size:14
Alignment explanation
Indices: 73901381--73901412 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73901371 TGATTTTTTG
73901381 GAAAAACA-AATTT
1 GAAAAACAGAATTT
73901394 GAAAAACAGAATTT
1 GAAAAACAGAATTT
73901408 GAAAA
1 GAAAA
73901413 TACCTCGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
GAAAAACAGAATTT
Found at i:73901453 original size:89 final size:86
Alignment explanation
Indices: 73901227--73901575 Score: 373
Period size: 89 Copynumber: 4.0 Consensus size: 86
73901217 AATAAAAATC
* * *
73901227 AATTGAAAATACCTCGGCATGTGATCTGAGGCTCAACTCACCTCTCGCAATAT-AGTTGATTTTT
1 AATTGAAAATACCTCAGC--GTG-TATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
* * *
73901291 TGACAAACATAAATTGAAAAAAAG
63 TGAAAAACAGAAATTGAAAAACAG
* * * *
73901315 AAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 -AATTGAAAATACCTCAGCGTGT-ATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
*
73901380 GGAAAAACA-AATTTGAAAAACAG
64 -GAAAAACAGAAATTGAAAAACAG
* *
73901403 AATTTGAAAATACCTC-GCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTT
1 AA-TTGAAAATACCTCAGCGTGT-A-T-GAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTT
* *
73901467 TTTGAAACACAGAAATTGAAGAACAG
61 TTTGAAAAACAGAAATTGAAAAACAG
* * * *
73901493 AAATGAAAACACCTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTT
1 AATTGAAAATACCTCAGCGTGTATGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTT
*
73901557 GAAAGACAGAAATTGAAAA
64 GAAAAACAGAAATTGAAAA
73901576 TACCTCAACG
Statistics
Matches: 226, Mismatches: 24, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
86 31 0.14
87 63 0.28
88 37 0.16
89 70 0.31
90 25 0.11
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (86 bp):
AATTGAAAATACCTCAGCGTGTATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGA
AAAACAGAAATTGAAAAACAG
Found at i:73901466 original size:177 final size:175
Alignment explanation
Indices: 73901229--73901554 Score: 453
Period size: 175 Copynumber: 1.9 Consensus size: 175
73901219 TAAAAATCAA
* * *
73901229 TTGAAAATACCTCGGCATGTGATCTGAGGCTCAACTCACCTCTCGCAATATAGTTGA-TTTTTTG
1 TTGAAAATACCTCGGCATGTGATCTAAGGCTCAACTCACCACTCGCAATATAGCTGATTTTTTTG
* * * *
73901293 ACAA-ACATAAATTGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACCT
66 A-AACACAGAAATTGAAAAAAAGAAA-TGAAAACACCTCAGC--GTCCTGAGGCTCAACTCACCT
*
73901357 CTCGCAATATGAGTTGATTTTTTGGAAAAACAAATTTGAAAAACAGAAT
127 CTCGCAATATGAGCTGATTTTTTGGAAAAACAAATTTGAAAAACAGAAT
*
73901406 TTGAAAATACCTC-GCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCTCGGCATGTGA-TCTAAGGCTCAACTCACCACTCGCAATAT-AGCTGATTTTTT
* * * *
73901469 TGAAACACAGAAATTGAAGAACAGAAATGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCT
64 TGAAACACAGAAATTGAAAAAAAGAAATGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTCT
73901534 CGCAATATGAGCTGATTTTTT
129 CGCAATATGAGCTGATTTTTT
73901555 TTGAAAGACA
Statistics
Matches: 132, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
175 40 0.30
176 31 0.23
177 35 0.27
178 26 0.20
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (175 bp):
TTGAAAATACCTCGGCATGTGATCTAAGGCTCAACTCACCACTCGCAATATAGCTGATTTTTTTG
AAACACAGAAATTGAAAAAAAGAAATGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGCTGATTTTTTGGAAAAACAAATTTGAAAAACAGAAT
Found at i:73901557 original size:177 final size:176
Alignment explanation
Indices: 73901229--73901575 Score: 445
Period size: 177 Copynumber: 2.0 Consensus size: 176
73901219 TAAAAATCAA
* * *
73901229 TTGAAAATACCTCGGCATGTGATCTGAGGCTCAACTCACCTCTCGCAATATAGTTGATTTTTTGA
1 TTGAAAATACCTCGGCATGTGATCTAAGGCTCAACTCACCACTCGCAATATAGCTGATTTTTTGA
* * * *
73901294 CAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACCTCT
66 CAAACAGAAATTGAAAAAAAGAAATTGAAAACACCTCAGCG-GTCCTGAGGCTCAACTCACCTCT
* *
73901359 CGCAATATGAGTTGATTTTTTGGAAAAACA-AATTTGAAAAACAGAAT
130 CGCAATATGAGCTGATTTTTT-GAAAAACAGAAATTGAAAAACAGAAT
*
73901406 TTGAAAATACCTC-GCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCTCGGCATGTGA-TCTAAGGCTCAACTCACCACTCGCAATAT-AGCTGA-TTTTT
* * * *
73901469 TGA-AACACAGAAATTGAAGAACAGAAA-TGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACC
63 TGACAA-ACAGAAATTGAAAAAAAGAAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACC
*
73901531 TCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAA
127 TCTCGCAATATGAGCTGA--TTTTTTGAAAAACAGAAATTGAAAA
73901576 TACCTCAACG
Statistics
Matches: 148, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
175 34 0.23
176 38 0.26
177 50 0.34
178 26 0.18
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (176 bp):
TTGAAAATACCTCGGCATGTGATCTAAGGCTCAACTCACCACTCGCAATATAGCTGATTTTTTGA
CAAACAGAAATTGAAAAAAAGAAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGCTGATTTTTTGAAAAACAGAAATTGAAAAACAGAAT
Found at i:73901671 original size:73 final size:74
Alignment explanation
Indices: 73901482--73902011 Score: 670
Period size: 73 Copynumber: 7.3 Consensus size: 74
73901472 AACACAGAAA
* * * *
73901482 TTGAAGAACAGAAA-TGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73901544 GCTGATTTTTT
66 GTTGA--TTTT
* * *
73901555 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73901620 GTTGATTTT
66 GTTGATTTT
*
73901629 TTGAAAAACAGAAATTG-AAATACCTCAACGTGTCTTGAGGTTCAACTCA-C-CTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73901691 GCTGATTTT
66 GTTGATTTT
*
73901700 TT-TAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACT---CTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73901761 GTTGA-TTT
66 GTTGATTTT
* * * * * *
73901769 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73901834 GTTGATTTTT
66 GTTGA-TTTT
*
73901844 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73901909 GTTGA-GTT
66 GTTGATTTT
* * * * * * *
73901917 TTGACAAATAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
73901982 ATTGATTTT
66 GTTGATTTT
* * * *
73901991 TTTAGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
73902012 AACGAAAATT
Statistics
Matches: 402, Mismatches: 43, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
69 6 0.01
70 68 0.17
71 50 0.12
72 1 0.00
73 125 0.31
74 48 0.12
75 67 0.17
76 37 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:73901951 original size:148 final size:147
Alignment explanation
Indices: 73901503--73902011 Score: 730
Period size: 148 Copynumber: 3.5 Consensus size: 147
73901493 AAATGAAAAC
* * *
73901503 ACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAG
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-AAAAACAG
* *
73901566 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTT
64 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* *
73901631 GAAAAACAGAAATTGAAA-T
128 GACAAACAAAAATTGAAATT
* * *
73901650 ACCTCAACGTGTCTTGAGGTTCAACTCA-C-CTCGCAATATGAGCTGATTTTTTT-AAAACAGAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAACAGAA
73901712 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACT---CTCTCGCAATATGAGTTGATTTTTGAC
66 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
73901774 AAACAAAAATTGAAATT
131 AAACAAAAATTGAAATT
* *
73901791 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-AAAAACAGA
* *
73901856 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAGTTTTGA
65 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
73901921 CAAATAAAAATTGAAATT
130 CAAACAAAAATTGAAATT
* ** * *
73901939 ACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAATTGATTTTTTTAGAAACATAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAACAGAA
*
73902004 ATTAAAAA
66 ATTGAAAA
73902012 AACGAAAATT
Statistics
Matches: 332, Mismatches: 20, Indels: 20
0.89 0.05 0.05
Matches are distributed among these distances:
140 21 0.06
141 44 0.13
142 1 0.00
143 22 0.07
144 42 0.13
145 44 0.13
146 7 0.02
147 39 0.12
148 94 0.28
149 18 0.05
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (147 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAACAGAA
ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
AAACAAAAATTGAAATT
Found at i:73902216 original size:14 final size:13
Alignment explanation
Indices: 73902181--73902225 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
73902171 TTGATTTTTG
73902181 AAAAACAGAAATT
1 AAAAACAGAAATT
*
73902194 AAAAGCAGAAATT
1 AAAAACAGAAATT
73902207 GAAAAACAGAAATT
1 -AAAAACAGAAATT
73902221 AAAAA
1 AAAAA
73902226 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:73902247 original size:100 final size:101
Alignment explanation
Indices: 73902009--73902369 Score: 423
Period size: 100 Copynumber: 3.7 Consensus size: 101
73901999 CATAAATTAA
* *
73902009 AAAAAC-GAAAATTGAAAATACCTCAGAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
73902073 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
*
73902108 AAAAACAGAAATTGAAAATATCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
73902173 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * * * *
73902208 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
73902273 GATTTTTGAAAAGCATAAATT--------G--A---
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * *
73902296 AAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
73902361 TTGATTTTT
64 TTGATTTTT
73902370 TTGAAAGATA
Statistics
Matches: 233, Mismatches: 24, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
88 24 0.10
90 40 0.17
91 1 0.00
93 1 0.00
99 62 0.27
100 90 0.39
101 15 0.06
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
Found at i:73902363 original size:90 final size:87
Alignment explanation
Indices: 73902194--73902369 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 87
73902184 AACAGAAATT
* * *
73902194 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
73902259 TCACAATATGAGTTGATTTTTG
66 TCACAATATGAGTTGATTTTTG
* * * * *
73902281 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
*
73902346 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCACAATATGAGTTGATTTTT
73902370 TTGAAAGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 13 0.17
88 22 0.29
89 1 0.01
90 41 0.53
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
TCACAATATGAGTTGATTTTTG
Found at i:73911567 original size:110 final size:110
Alignment explanation
Indices: 73911374--73911593 Score: 422
Period size: 110 Copynumber: 2.0 Consensus size: 110
73911364 TGTGACTATT
73911374 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
*
73911439 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAGTCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
*
73911484 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
73911549 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
73911594 CCTATCCACA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.24
Consensus pattern (110 bp):
ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAACTCAAGAGCAA
AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
Found at i:73911980 original size:39 final size:39
Alignment explanation
Indices: 73911926--73912143 Score: 321
Period size: 39 Copynumber: 5.5 Consensus size: 39
73911916 TAATGGAGAA
* *
73911926 TTATACCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
73911965 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
73912004 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
73912043 TTATATCCGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
73912082 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
73912121 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
73912144 CATGCTTTGT
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 145 0.87
40 21 0.13
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:73918368 original size:25 final size:25
Alignment explanation
Indices: 73918329--73918475 Score: 106
Period size: 25 Copynumber: 5.9 Consensus size: 25
73918319 AAAATAGATA
*
73918329 TAAAAAATATGTACATAATATAGTG
1 TAAAAAATATATACATAATATAGTG
* *
73918354 TAAAAAATACATACATAATATAAT-
1 TAAAAAATATATACATAATATAGTG
* *
73918378 T--AAAATATATACATAAGATAACATG
1 TAAAAAATATATACATAATAT-A-GTG
* *
73918403 TAGAAAAAATATATAAATAATATAGTA
1 T--AAAAAATATATACATAATATAGTG
* * *
73918430 TTAAAGATATATACATAAAATA--G
1 TAAAAAATATATACATAATATAGTG
* * *
73918453 TATAATATATATACGTAATATAG
1 TAAAAAATATATACATAATATAG
73918476 AATTTAGAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 17
0.73 0.15 0.13
Matches are distributed among these distances:
22 16 0.17
23 18 0.19
24 3 0.03
25 39 0.41
27 2 0.02
28 1 0.01
29 16 0.17
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.31
Consensus pattern (25 bp):
TAAAAAATATATACATAATATAGTG
Found at i:73918424 original size:76 final size:80
Alignment explanation
Indices: 73918296--73918474 Score: 197
Period size: 76 Copynumber: 2.3 Consensus size: 80
73918286 ATGTTAAGAT
* * * * * *
73918296 ATATATAATATATACATATGTATAAAATAGATATAAAAAATATGTACATAATATAGTGTAAAAAA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAATATATAAATAATATAGTATAAAAAA
*
73918361 TACATACATAATATA
66 TACATACATAAAATA
* * *
73918376 AT-TAAAATATATACATAAG-ATAACAT-G-TAGAAAAAATATATAAATAATATAGTATTAAAGA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAATATATAAATAATATAGTATAAAAAA
*
73918437 TATATACATAAAATA
66 TACATACATAAAATA
* * *
73918452 GTATAATATATATACGTAA-TATA
1 ATATAAAATATATACATAAGTATA
73918475 GAATTTAGAA
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
76 42 0.51
77 18 0.22
78 6 0.07
79 15 0.18
80 2 0.02
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.32
Consensus pattern (80 bp):
ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAATATATAAATAATATAGTATAAAAAA
TACATACATAAAATA
Found at i:73918462 original size:23 final size:25
Alignment explanation
Indices: 73918411--73918542 Score: 100
Period size: 23 Copynumber: 5.6 Consensus size: 25
73918401 TGTAGAAAAA
*
73918411 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
73918436 ATATATACATAAAATAGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
73918459 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
73918483 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
73918505 AATATATATATAATATAATATT-AAG
1 -ATATATACATAATATAGTATTAAAG
*
73918530 AAATATA-ATAATA
1 ATATATACATAATA
73918543 AAAAAAAGAG
Statistics
Matches: 85, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 38 0.45
24 22 0.26
25 21 0.25
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:73918518 original size:24 final size:23
Alignment explanation
Indices: 73918491--73918542 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
73918481 AGAATATACC
*
73918491 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
73918515 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
73918538 TAATA
1 TAATA
73918543 AAAAAAAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:73918861 original size:16 final size:16
Alignment explanation
Indices: 73918823--73918861 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73918813 CTCCAAAAAA
*
73918823 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
73918839 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
73918855 AATAACT
1 AAAAACT
73918862 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:73919077 original size:18 final size:18
Alignment explanation
Indices: 73919054--73919107 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
73919044 GGAGTAGGTG
73919054 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
73919072 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
73919084 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
73919102 GTGGAG
1 GTGGAG
73919108 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:73919167 original size:18 final size:17
Alignment explanation
Indices: 73919080--73919137 Score: 54
Period size: 18 Copynumber: 3.6 Consensus size: 17
73919070 TAGTGGAGTA
73919080 GGTAGTGGAGCAAGTGT
1 GGTAGTGGAGCAAGTGT
73919097 GGCTAGT-G-G--AGT-T
1 GG-TAGTGGAGCAAGTGT
*
73919110 GGTGGTGGAGCAAGTGT
1 GGTAGTGGAGCAAGTGT
73919127 GGTTAGTGGAG
1 GG-TAGTGGAG
73919138 TTAGTGGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 13
0.68 0.04 0.28
Matches are distributed among these distances:
12 3 0.09
13 4 0.12
14 4 0.12
16 4 0.12
17 6 0.19
18 11 0.34
ACGTcount: A:0.19, C:0.05, G:0.50, T:0.26
Consensus pattern (17 bp):
GGTAGTGGAGCAAGTGT
Found at i:73919199 original size:30 final size:30
Alignment explanation
Indices: 73919021--73919199 Score: 272
Period size: 30 Copynumber: 6.0 Consensus size: 30
73919011 GGTACAAGTG
*
73919021 GTGGTGGAGCAAGTGTGGCTAATGGAG-TA
1 GTGGTGGAGCAAGTGTGGCTAGTGGAGTTA
73919050 GGTGGTGGAGCAAGTGTGGCTAGTGGAG-TA
1 -GTGGTGGAGCAAGTGTGGCTAGTGGAGTTA
* *
73919080 GGTAGTGGAGCAAGTGTGGCTAGTGGAGTTG
1 -GTGGTGGAGCAAGTGTGGCTAGTGGAGTTA
*
73919111 GTGGTGGAGCAAGTGTGGTTAGTGGAGTTA
1 GTGGTGGAGCAAGTGTGGCTAGTGGAGTTA
*
73919141 GTGGTGGAGCAAGTGTGGTTAGTGGAGTTA
1 GTGGTGGAGCAAGTGTGGCTAGTGGAGTTA
*
73919171 ATGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GTGGTGGAGCAAGTGTGGCTAGTGGAGTT
73919200 GGAGGTAGCA
Statistics
Matches: 140, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
30 139 0.99
31 1 0.01
ACGTcount: A:0.21, C:0.06, G:0.47, T:0.27
Consensus pattern (30 bp):
GTGGTGGAGCAAGTGTGGCTAGTGGAGTTA
Found at i:73921280 original size:19 final size:20
Alignment explanation
Indices: 73921242--73921280 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
73921232 CTCCATATCA
73921242 ATTTCTAAATGTTTTAAATT
1 ATTTCTAAATGTTTTAAATT
* *
73921262 ATTTTTAAA-GTTTTCAATT
1 ATTTCTAAATGTTTTAAATT
73921281 TGACTAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (20 bp):
ATTTCTAAATGTTTTAAATT
Found at i:73927066 original size:43 final size:44
Alignment explanation
Indices: 73926999--73927132 Score: 218
Period size: 43 Copynumber: 3.1 Consensus size: 44
73926989 AAAAATTTGT
* * * *
73926999 GGCGTATATTGGGAAAAACACCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTAGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
73927043 GGCGTTT-GTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTAGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
73927086 GGCGTTTAG-GGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTAGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
73927129 GGCG
1 GGCG
73927133 CTTTTTTTAC
Statistics
Matches: 85, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
43 78 0.92
44 7 0.08
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.22
Consensus pattern (44 bp):
GGCGTTTAGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:73933181 original size:9 final size:9
Alignment explanation
Indices: 73933167--73933559 Score: 172
Period size: 9 Copynumber: 42.6 Consensus size: 9
73933157 TATTTAAGTA
73933167 TTATGTAAG
1 TTATGTAAG
73933176 TTATGTAAG
1 TTATGTAAG
*
73933185 TTATGATATG
1 TTATG-TAAG
* * *
73933195 ATATAT-AT
1 TTATGTAAG
*
73933203 TTATGTAAA
1 TTATGTAAG
* *
73933212 TTATAT-AT
1 TTATGTAAG
*
73933220 TTATCTAAG
1 TTATGTAAG
*
73933229 TTATATAAG
1 TTATGTAAG
73933238 TTATGTAAG
1 TTATGTAAG
*
73933247 TTATGTAAA
1 TTATGTAAG
*
73933256 TTATGATATAAAA
1 TTATG---T-AAG
*
73933269 TATATTTAAG
1 T-TATGTAAG
73933279 TATTATGTAAG
1 --TTATGTAAG
73933290 TTATGTAAG
1 TTATGTAAG
* *
73933299 TTATAT-AT
1 TTATGTAAG
*
73933307 TTATCTAAG
1 TTATGTAAG
*
73933316 TTATATAAG
1 TTATGTAAG
*
73933325 TTATGTACG
1 TTATGTAAG
*
73933334 TTTTGTAAG
1 TTATGTAAG
* *
73933343 TTATATAAA
1 TTATGTAAG
73933352 TTATG-ATA-
1 TTATGTA-AG
* ** *
73933360 TCAAATATAT
1 TTATGTA-AG
73933370 TTATGTAAG
1 TTATGTAAG
73933379 TTATGTAAG
1 TTATGTAAG
*
73933388 TTATGATATG
1 TTATG-TAAG
* * *
73933398 ATATAT-AT
1 TTATGTAAG
*
73933406 TTATGTAAA
1 TTATGTAAG
* *
73933415 TTATAT-AT
1 TTATGTAAG
*
73933423 TTATCTAAG
1 TTATGTAAG
*
73933432 TTATATAAG
1 TTATGTAAG
73933441 TTATGTAAG
1 TTATGTAAG
*
73933450 TTATGTAAA
1 TTATGTAAG
*
73933459 TTATGATATAAAA
1 TTATG---T-AAG
*
73933472 TATATTTAAG
1 T-TATGTAAG
73933482 TATTATGTAAG
1 --TTATGTAAG
73933493 TTATGTAAG
1 TTATGTAAG
* *
73933502 TTATAT-AT
1 TTATGTAAG
*
73933510 TTATCTAAG
1 TTATGTAAG
*
73933519 TTATATAAG
1 TTATGTAAG
*
73933528 TTATGTACG
1 TTATGTAAG
*
73933537 TTTTGTAAG
1 TTATGTAAG
* *
73933546 TTATATAAA
1 TTATGTAAG
73933555 TTATG
1 TTATG
73933560 ATATCAAATA
Statistics
Matches: 290, Mismatches: 69, Indels: 50
0.71 0.17 0.12
Matches are distributed among these distances:
8 35 0.12
9 201 0.69
10 20 0.07
11 16 0.06
12 4 0.01
13 8 0.03
14 6 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:73933328 original size:96 final size:96
Alignment explanation
Indices: 73933220--73933590 Score: 490
Period size: 96 Copynumber: 3.8 Consensus size: 96
73933210 AATTATATAT
* *
73933220 TTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTAT
1 TTATATAAGTTATATAAGTTATGTAAGTTATATAAATTATGATATAAAATATATTTAAGTATTAT
73933285 GTAAGTTATGTAAGTTATATATTTATCTAAG
66 GTAAGTTATGTAAGTTATATATTTATCTAAG
* * * * *
73933316 TTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATCAAATATATTTATGTAAGTT
1 TTATATAAGTTATATAAGTTATGTAAGTTATATAAATTATGATATAAAATATATTTAAGT-A-TT
* * * *
73933381 ATGTAAGTTATGATATGATATATATTTATGTAAATTA
64 ATGTAAGTTATG-TAAGTTATATATTTATCT-AA--G
*
73933418 TATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGT
1 T-TA--TA--TAAGTTATATAAGTTATGTAAGTTATATAAATTATGATATAAAATATATTTAAGT
73933483 ATTATGTAAGTTATGTAAGTTATATATTTATCTAAG
61 ATTATGTAAGTTATGTAAGTTATATATTTATCTAAG
* * * * *
73933519 TTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATCAAATATATTTATGTATTAT
1 TTATATAAGTTATATAAGTTATGTAAGTTATATAAATTATGATATAAAATATATTTAAGTATTAT
73933584 GTAAGTT
66 GTAAGTT
73933591 TTTTATTTCA
Statistics
Matches: 237, Mismatches: 27, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
96 114 0.48
97 1 0.00
98 16 0.07
99 15 0.06
100 4 0.02
101 1 0.00
102 1 0.00
103 4 0.02
104 15 0.06
105 16 0.07
106 1 0.00
107 49 0.21
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (96 bp):
TTATATAAGTTATATAAGTTATGTAAGTTATATAAATTATGATATAAAATATATTTAAGTATTAT
GTAAGTTATGTAAGTTATATATTTATCTAAG
Found at i:73933343 original size:114 final size:114
Alignment explanation
Indices: 73933143--73933356 Score: 290
Period size: 114 Copynumber: 1.9 Consensus size: 114
73933133 ACTAGTTATG
* * * *
73933143 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
*
73933208 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
73933257 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
73933320 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
73933357 ATATCAAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 62 0.71
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:73933374 original size:114 final size:113
Alignment explanation
Indices: 73933143--73933462 Score: 283
Period size: 114 Copynumber: 2.8 Consensus size: 113
73933133 ACTAGTTATG
* * * *
73933143 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATA-TGATATATATTTAT
1 TATGATATAATATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATATTTATCTA-AGTTAT
* * * * * * **
73933207 GTAAATTATATA-TTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAGTTATGTAGTTT-TGTAAGTTATATAAATTATGTAAGTCAAATAAAT
*
73933257 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAATATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
*
73933322 AAGTTATGTACGTTTTGTAAGTTATATAAATTATG-ATA-TCAAATATATT
66 AAGTTATGTA-GTTTTGTAAGTTATATAAATTATGTA-AGTCAAATA-AAT
* * * * * * * *
73933371 TATG-TA-AGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATATATTTATCTAAGTT
1 TATGATATA-ATATAT-ATTTAAG-TATTATGTA-AGTTATGTAAGTTATATATTTATCTAAGTT
* *
73933434 ATATAAGTTATGTAAGTTATGTAAATTAT
62 ATATAAGTTATGT-AGTTTTGTAAGTTAT
73933463 GATATAAAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
112 1 0.01
113 27 0.16
114 79 0.46
115 10 0.06
116 53 0.31
117 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (113 bp):
TATGATATAATATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
AAGTTATGTAGTTTTGTAAGTTATATAAATTATGTAAGTCAAATAAAT
Found at i:73933516 original size:203 final size:203
Alignment explanation
Indices: 73933167--73933590 Score: 834
Period size: 203 Copynumber: 2.1 Consensus size: 203
73933157 TATTTAAGTA
73933167 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATATATTTATCTAAGTTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATATATTTATCTAAGTTA
73933232 TATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTA
66 TATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTA
73933297 AGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATC
131 AGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATC
73933362 AAATATAT
196 AAATATAT
73933370 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATATATTTATCTAAGTTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATATATTTATCTAAGTTA
73933435 TATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTA
66 TATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTA
73933500 AGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATC
131 AGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATC
73933565 AAATATAT
196 AAATATAT
73933573 TTATGT-A-TTATGTAAGTT
1 TTATGTAAGTTATGTAAGTT
73933591 TTTTATTTCA
Statistics
Matches: 221, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
201 11 0.05
202 1 0.00
203 209 0.95
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.47
Consensus pattern (203 bp):
TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATATATTTATCTAAGTTA
TATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTA
AGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTATGATATC
AAATATAT
Found at i:73933598 original size:87 final size:87
Alignment explanation
Indices: 73933406--73933590 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
73933396 TGATATATAT
*
73933406 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
73933471 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
73933493 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
73933556 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
73933580 TTATGTAAGTT
1 TTATGTAAGTT
73933591 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 70 0.81
88 3 0.03
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:73933684 original size:15 final size:15
Alignment explanation
Indices: 73933664--73933693 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73933654 AAGTAGCGGG
73933664 ATTAAATAATATTTA
1 ATTAAATAATATTTA
73933679 ATTAAATAATATTTA
1 ATTAAATAATATTTA
73933694 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:73933949 original size:70 final size:70
Alignment explanation
Indices: 73933821--73933980 Score: 279
Period size: 70 Copynumber: 2.3 Consensus size: 70
73933811 AAGTACATAT
73933821 TAATATAAAAAAAGAATCGT-AATAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGA
1 TAATAT-AAAAAAGAATCGTAAATAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGA
73933885 ATATAA
65 ATATAA
*
73933891 TAATATAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGA
1 TAATATAAAAAAGAATCGTAAATA-AAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGA
73933955 ATATAA
65 ATATAA
73933961 TAATATAAAAAAGAATCGTA
1 TAATATAAAAAAGAATCGTA
73933981 GTTTAATTTT
Statistics
Matches: 87, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
69 13 0.15
70 53 0.61
71 21 0.24
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.29
Consensus pattern (70 bp):
TAATATAAAAAAGAATCGTAAATAAAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAA
TATAA
Found at i:73934725 original size:274 final size:279
Alignment explanation
Indices: 73933909--73935020 Score: 2068
Period size: 274 Copynumber: 4.0 Consensus size: 279
73933899 AAAAGAATCG
73933909 TAAATATTAAAATCAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATATAAAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
73933973 GAATCGTAGTTTAA-TTTT-T-A-T-AAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTC
66 GAATCGTAGTTTAATTTTTATAAGTAAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTC
*
73934033 GATAGAACTTTTTTCAAGTCTTTTTGATTTTTTTAAGATTCATCATACGTGGCGTTGTTACACCT
131 GATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCT
73934098 AGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATAC
196 AGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATAC
73934163 TGTGAATCTTTAAAATATT
261 TGTGAATCTTTAAAATATT
73934182 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT-AAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
73934246 GAATCGTAGTTTAATTTTTATAAGTAAAAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGC
66 GAATCGTAGTTTAATTTTTATAAGT--AAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGC
73934311 TCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
129 TCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
73934376 CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
194 CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
*
73934441 ACTTTGAATCTTTAAAATATT
259 ACTGTGAATCTTTAAAATATT
73934462 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
73934527 GAATCGTAGTTTAA-TTTT-T-A-T-AAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTC
66 GAATCGTAGTTTAATTTTTATAAGTAAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTC
*
73934587 GATAGAACTTTTTTCAAGTCTTTTTGATTTTTTTAAGATTCATCATACGTGGCGTTGTTACACCT
131 GATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCT
73934652 AGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATAC
196 AGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATAC
73934717 TGTGAATCTTTAAAATATT
261 TGTGAATCTTTAAAATATT
73934736 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
73934801 GAATCGTAGTTTAATTTTTATAAGTAAAAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGC
66 GAATCGTAGTTTAATTTTTATAAGT--AAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGC
73934866 TCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
129 TCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACAC
73934931 CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
194 CTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATAT
*
73934996 ACTTTGAATCTTTAAAATATT
259 ACTGTGAATCTTTAAAATATT
73935017 TAAA
1 TAAA
73935021 ATAAGGTTGG
Statistics
Matches: 817, Mismatches: 6, Indels: 24
0.96 0.01 0.03
Matches are distributed among these distances:
273 48 0.06
274 298 0.36
275 5 0.01
276 2 0.00
277 3 0.00
278 2 0.00
279 1 0.00
280 249 0.30
281 209 0.26
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (279 bp):
TAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA
GAATCGTAGTTTAATTTTTATAAGTAAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTC
GATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCT
AGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATAC
TGTGAATCTTTAAAATATT
Found at i:73935302 original size:15 final size:15
Alignment explanation
Indices: 73935282--73935310 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73935272 AGAATTTTGA
73935282 AATAAAACGTACCTT
1 AATAAAACGTACCTT
73935297 AATAAAACGTACCT
1 AATAAAACGTACCT
73935311 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:73935819 original size:183 final size:183
Alignment explanation
Indices: 73935511--73936062 Score: 1050
Period size: 183 Copynumber: 3.0 Consensus size: 183
73935501 CCTAGAACAG
73935511 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
73935576 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
73935641 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
73935694 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
73935759 ATCGGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
73935824 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
73935877 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
73935942 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* * * *
73936007 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
73936060 ATG
1 ATG
73936063 GAACTATATC
Statistics
Matches: 362, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 362 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:73936152 original size:14 final size:13
Alignment explanation
Indices: 73936133--73936162 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
73936123 CAATATAATT
73936133 TTACTTCATATATA
1 TTACTTCATATA-A
73936147 TTACTTCATATAA
1 TTACTTCATATAA
73936160 TTA
1 TTA
73936163 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:73939016 original size:26 final size:26
Alignment explanation
Indices: 73938981--73939033 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
73938971 GGGTAAAAAT
73938981 TTTGGAGGAGAAGAAGTTGGGGGAAA
1 TTTGGAGGAGAAGAAGTTGGGGGAAA
*
73939007 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGAGGAGAAGAAGTTGGGGGAAA
73939033 T
1 T
73939034 CGGGGAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.47, T:0.21
Consensus pattern (26 bp):
TTTGGAGGAGAAGAAGTTGGGGGAAA
Found at i:73939028 original size:15 final size:15
Alignment explanation
Indices: 73938982--73939030 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
73938972 GGTAAAAATT
*
73938982 TTGGAGGAGAAGAAG
1 TTGGGGGAGAAGAAG
*
73938997 TT-GGGG-G-A-AAT
1 TTGGGGGAGAAGAAG
73939008 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
73939023 TTGGGGGA
1 TTGGGGGA
73939031 AATCGGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 8
0.71 0.08 0.21
Matches are distributed among these distances:
11 4 0.15
12 5 0.19
13 2 0.07
14 4 0.15
15 12 0.44
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.18
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:73939342 original size:28 final size:28
Alignment explanation
Indices: 73939310--73939367 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
73939300 AATCAAAACT
*
73939310 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
73939338 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
73939366 CT
1 CT
73939368 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:73939368 original size:21 final size:21
Alignment explanation
Indices: 73939344--73939387 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
73939334 ATCCCTATAA
* *
73939344 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
73939365 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
73939386 CC
1 CC
73939388 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:73939649 original size:21 final size:22
Alignment explanation
Indices: 73939616--73939659 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
73939606 TATTAACCCT
*
73939616 AACCCCTAACCCTTAAATCATA
1 AACCCCTAACCCTTAAACCATA
73939638 AACCCC-AACCCTTAAACCATA
1 AACCCCTAACCCTTAAACCATA
73939659 A
1 A
73939660 TACATAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCTTAAACCATA
Found at i:73939649 original size:27 final size:27
Alignment explanation
Indices: 73939596--73939648 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
73939586 ACAAAATAAA
* * *
73939596 AACCCTTAAGTATTAACCCTAACCCCT
1 AACCCTTAAATATAAACCCCAACCCCT
73939623 AACCCTTAAATCATAAACCCCAACCC
1 AACCCTTAAAT-ATAAACCCCAACCC
73939649 TTAAACCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.38, C:0.40, G:0.02, T:0.21
Consensus pattern (27 bp):
AACCCTTAAATATAAACCCCAACCCCT
Found at i:73939829 original size:40 final size:41
Alignment explanation
Indices: 73939733--73939829 Score: 169
Period size: 41 Copynumber: 2.4 Consensus size: 41
73939723 AACCCTAAAC
*
73939733 TTTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
73939774 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
73939814 TTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
73939830 TGGTAAAACG
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
40 17 0.31
41 37 0.69
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:73941708 original size:148 final size:144
Alignment explanation
Indices: 73941334--73941762 Score: 576
Period size: 148 Copynumber: 2.9 Consensus size: 144
73941324 GTGAATATCC
* * * *
73941334 AATGTGACTCA-CCATTTGAGAACAAGATAAAATGTTATAGACATG-GAGGTTTACATTGTTCAA
1 AATGTGACTCATCC-TTTGAAAACAAGATAAAATGTTAAAGA-TTGAAAGG-TTACATTGTTCAA
*
73941397 ATAAAAACTATAGCTCTCCTTAACAATTAAAATTTGAGACCCAAATTCGAGTTTTATTATACACA
63 ATAAAAACTATAGCTTTCC-TAACAATTAAAATTTGAGACCCAAATTCGAGTTTTATTATACACA
*
73941462 ATTTTCATATGAGTCTCT
127 ATTATCATATGAGTCTCT
* * *
73941480 AATGTGACTCATCCTTTGAAAACAAGATAAAATATTAGAGGCATAGAAA-GTTACATTGTTCAAA
1 AATGTGACTCATCCTTTGAAAACAAGATAAAATGTTA-AAG-ATTGAAAGGTTACATTGTTCAAA
73941544 TAAAAACTATAGCTTTCCTAAGCAATTAAAATTTGAGACCCAAATTCGAGTTTTATTATACACAA
64 TAAAAACTATAGCTTTCCTAA-CAATTAAAATTTGAGACCCAAATTCGAGTTTTATTATACACAA
73941609 TTATCATATGTGAGTCTCT
128 TTATCATA--TGAGTCTCT
*
73941628 AATGTGACTCATCCTCTGAAAACAAGATAAAATGTTAAAGATGTGAAAGGTTACATTGTTCAAAT
1 AATGTGACTCATCCTTTGAAAACAAGATAAAATGTTAAAGAT-TGAAAGGTTACATTGTTCAAAT
* * * * * * * *
73941693 CAAAACTATACCTTTCCTCAACAAATAAAATTTGGGGCTCATATTCGAGTTTTATTATGCACAAT
65 AAAAACTATAGCTTTCCT-AACAATTAAAATTTGAGACCCAAATTCGAGTTTTATTATACACAAT
73941758 TATCA
129 TATCA
73941763 ATTTATTTAA
Statistics
Matches: 252, Mismatches: 21, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
145 3 0.01
146 115 0.46
147 11 0.04
148 121 0.48
149 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.33
Consensus pattern (144 bp):
AATGTGACTCATCCTTTGAAAACAAGATAAAATGTTAAAGATTGAAAGGTTACATTGTTCAAATA
AAAACTATAGCTTTCCTAACAATTAAAATTTGAGACCCAAATTCGAGTTTTATTATACACAATTA
TCATATGAGTCTCT
Found at i:73946383 original size:38 final size:38
Alignment explanation
Indices: 73946324--73946564 Score: 117
Period size: 38 Copynumber: 6.4 Consensus size: 38
73946314 GTCAACATAA
* * * * *
73946324 GCCGACCTTTATTAAAGGGTTGCGAAAGGCTTAGTCAAT
1 GCCGACCTTTA-AAAAAGGTTGCGAAAGACCTAGTCAAG
*
73946363 GCCGACCTTTAAAAAAGGTTGCGATAGACCTAGTCAAG
1 GCCGACCTTTAAAAAAGGTTGCGAAAGACCTAGTCAAG
* * * * *
73946401 GCCAACCTTTGAAAAAGGTTGTGATAGACCT-GTTTAAG
1 GCCGACCTTTAAAAAAGGTTGCGAAAGACCTAG-TCAAG
* * *
73946439 G-CAACC-TT-AAAAAGGTTGGGATAGACC-AGTCTAA-
1 GCCGACCTTTAAAAAAGGTTGCGAAAGACCTAGTC-AAG
*** * * *
73946473 GATAACCTTTAAAAAAAGTTGGGATAGACCATA-TCTAAG
1 GCCGACCTTTAAAAAAGGTTGCGAAAGACC-TAGTC-AAG
* * * *
73946512 G--AACATTTAAAAAAAGTTGCGATAA-ACCTTGTCTAAG
1 GCCGACCTTTAAAAAAGGTTGCGA-AAGACCTAGTC-AAG
*
73946549 G-CAACCTTTAAAAAAG
1 GCCGACCTTTAAAAAAG
73946565 ATTGGGATAG
Statistics
Matches: 170, Mismatches: 20, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
34 2 0.01
35 25 0.15
36 5 0.03
37 53 0.31
38 72 0.42
39 13 0.08
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (38 bp):
GCCGACCTTTAAAAAAGGTTGCGAAAGACCTAGTCAAG
Found at i:73946462 original size:35 final size:35
Alignment explanation
Indices: 73946374--73947083 Score: 509
Period size: 35 Copynumber: 19.5 Consensus size: 35
73946364 CCGACCTTTA
*
73946374 AAAAAGGTTGCGATAGACCTAGTC-AAGGCCAACCTTT
1 AAAAAGGTTGGGATAGACCT-GTCTAAGG-CAACC-TT
* *
73946411 GAAAAAGGTTGTGATAGACCTGTTTAAGGCAACCTT
1 -AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTT
* **
73946447 AAAAAGGTTGGGATAGACCAGTCTAAGATAACCTTT
1 AAAAAGGTTGGGATAGACCTGTCTAAGGCAACC-TT
* * *
73946483 AAAAAAAGTTGGGATAGACCATATCTAAGG-AACATTT
1 -AAAAAGGTTGGGATAGACC-TGTCTAAGGCAAC-CTT
* * *
73946520 AAAAAAAGTTGCGATAAACCTTGTCTAAGGCAACCTTT
1 -AAAAAGGTTGGGATAGACC-TGTCTAAGGCAACC-TT
* * *
73946558 AAAAAAGATTGGGATAGA-ATCGTCTAAAGCAACCTT
1 -AAAAAGGTTGGGATAGACCT-GTCTAAGGCAACCTT
* *
73946594 AAATAGGTTGGTG-TAGACCTTGTCTAGGGCAACCTTT
1 AAAAAGGTTGG-GATAGACC-TGTCTAAGGCAACC-TT
*
73946631 AAAAAAGGTTGGGATAGACCTTATCTAAGGCAACCTTTT
1 -AAAAAGGTTGGGATAGACC-TGTCTAAGGCAACC--TT
* * *
73946670 AAAAATGTTGGGATAGACCTTGCCTAAGGCAACATTT
1 AAAAAGGTTGGGATAGACC-TGTCTAAGGCAAC-CTT
* *
73946707 AAAAAAGGTTGGGATAGATCTTGTTTAAGGCAACCTT
1 -AAAAAGGTTGGGATAGA-CCTGTCTAAGGCAACCTT
* * *
73946744 AAAAAAGGGTTGAGATAGACTTGTTTAAGGCAACCTT
1 -AAAAA-GGTTGGGATAGACCTGTCTAAGGCAACCTT
** * *
73946781 AAAAAAAGGTTACGATAGACTTGTCTAAAGCAACCTT
1 --AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTT
* * *
73946818 AAAAAGGTTGGGATAGA-TTCGTCTAAGGTAACCTC
1 AAAAAGGTTGGGATAGACCT-GTCTAAGGCAACCTT
* * * * *
73946853 CAAAAGGTTGGAATAGATCTTGTCTAAAGCAACTTTT
1 AAAAAGGTTGGGATAGA-CCTGTCTAAGGCAAC-CTT
* * * *
73946890 AGAAAAGGTTGGGATTGACCTATCTAAGACAACGTT
1 A-AAAAGGTTGGGATAGACCTGTCTAAGGCAACCTT
* ** * *
73946926 AAAAATGTTGGGATAGACCCATTTACA-ACAACCTT
1 AAAAAGGTTGGGATAGACCTGTCTA-AGGCAACCTT
* * *
73946961 AAATAA-GTTGAGATAGACCTTTTCCAAGGCAA-CTT
1 AAA-AAGGTTGGGATAGACC-TGTCTAAGGCAACCTT
* * *
73946996 AAAAACAGTTGGGATAAACCCGTCTAAGGCAACCTT
1 AAAAA-GGTTGGGATAGACCTGTCTAAGGCAACCTT
* * * * *
73947032 AAAAAAGTTAGGATAAACCCGTCTAAGGCAAACTT
1 AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTT
*
73947067 AAAAAGGTCGGGATAGA
1 AAAAAGGTTGGGATAGA
73947084 TATTTGTCTC
Statistics
Matches: 554, Mismatches: 86, Indels: 67
0.78 0.12 0.09
Matches are distributed among these distances:
34 4 0.01
35 182 0.33
36 59 0.11
37 140 0.25
38 165 0.30
39 4 0.01
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTT
Found at i:73946649 original size:38 final size:38
Alignment explanation
Indices: 73946367--73947083 Score: 581
Period size: 38 Copynumber: 19.6 Consensus size: 38
73946357 GTCAATGCCG
* *
73946367 ACCTTTAAAAAAGGTTGCGATAGACCTAGTC-AAGGCCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGG-CA
* * *
73946405 ACCTTTGAAAAAGGTTGTGATAGACC-TGTTTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* **
73946442 ACC-TT-AAAAAGGTTGGGATAGACC-AGTCTAAGATA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * *
73946477 ACCTTTAAAAAAAGTTGGGATAGACCATATCTAAGG-A
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * *
73946514 ACATTTAAAAAAAGTTGCGATAAACCTTGTCTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * *
73946552 ACCTTTAAAAAAGATTGGGATAGA-ATCGTCTAAAGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
73946589 ACC-TT-AAATAGGTTGGTG-TAGACCTTGTCTAGGGCA
1 ACCTTTAAAAAAGGTTGG-GATAGACCTTGTCTAAGGCA
*
73946625 ACCTTTAAAAAAGGTTGGGATAGACCTTATCTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * *
73946663 ACCTTTTAAAAATGTTGGGATAGACCTTGCCTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * *
73946701 ACATTTAAAAAAGGTTGGGATAGATCTTGTTTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
73946739 ACC-TTAAAAAAGGGTTGAGATAGA-CTTGTTTAAGGCA
1 ACCTTTAAAAAA-GGTTGGGATAGACCTTGTCTAAGGCA
* ** *
73946776 ACCTTAAAAAAAGGTTACGATAGA-CTTGTCTAAAGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
*
73946813 ACC-TT-AAAAAGGTTGGGATAGA--TTCGTCTAAGGTA
1 ACCTTTAAAAAAGGTTGGGATAGACCTT-GTCTAAGGCA
** * * *
73946848 ACC--TCCAAAAGGTTGGAATAGATCTTGTCTAAAGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * * *
73946884 ACTTTTAGAAAAGGTTGGGATTGACC-TATCTAAGACA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
73946921 A-CGTT-AAAAATGTTGGGATAGACCCATT-TAC-AA--CA
1 ACCTTTAAAAAAGGTTGGGATAGA-CC-TTGT-CTAAGGCA
* * * *
73946956 ACC-TTAAATAA-GTTGAGATAGACCTTTTCCAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
73946992 A-C-TTAAAAACA-GTTGGGATAAACC-CGTCTAAGGCA
1 ACCTTTAAAAA-AGGTTGGGATAGACCTTGTCTAAGGCA
* * *
73947027 ACC-TTAAAAAA-GTTAGGATAAACC-CGTCTAAGGCA
1 ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
73947062 AAC-TT-AAAAAGGTCGGGATAGA
1 ACCTTTAAAAAAGGTTGGGATAGA
73947084 TATTTGTCTC
Statistics
Matches: 560, Mismatches: 88, Indels: 65
0.79 0.12 0.09
Matches are distributed among these distances:
33 3 0.01
34 13 0.02
35 163 0.29
36 62 0.11
37 135 0.24
38 184 0.33
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (38 bp):
ACCTTTAAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
Found at i:73958693 original size:35 final size:35
Alignment explanation
Indices: 73958647--73958729 Score: 157
Period size: 35 Copynumber: 2.4 Consensus size: 35
73958637 ACCGTGACAT
*
73958647 ACCAGTGGCTGGAGCAGGTGGTGGACGGCAGATGC
1 ACCAGTGGCTGGAGCAGGTGGTCGACGGCAGATGC
73958682 ACCAGTGGCTGGAGCAGGTGGTCGACGGCAGATGC
1 ACCAGTGGCTGGAGCAGGTGGTCGACGGCAGATGC
73958717 ACCAGTGGCTGGA
1 ACCAGTGGCTGGA
73958730 ATAGGGCAGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.20, C:0.22, G:0.43, T:0.14
Consensus pattern (35 bp):
ACCAGTGGCTGGAGCAGGTGGTCGACGGCAGATGC
Found at i:73959895 original size:7 final size:7
Alignment explanation
Indices: 73959883--73959964 Score: 60
Period size: 7 Copynumber: 11.9 Consensus size: 7
73959873 TTTACAAAAA
73959883 CCTAAAC
1 CCTAAAC
73959890 CCTAAAC
1 CCTAAAC
*
73959897 CTTAAAC
1 CCTAAAC
*
73959904 CATAAAC
1 CCTAAAC
* *
73959911 CAT-GAC
1 CCTAAAC
**
73959917 TTTAAAC
1 CCTAAAC
73959924 CGC-AAAC
1 C-CTAAAC
73959931 CCTAAAC
1 CCTAAAC
73959938 CCTAAAC
1 CCTAAAC
* *
73959945 CCCAAAT
1 CCTAAAC
*
73959952 CTTAAAC
1 CCTAAAC
73959959 CCTAAA
1 CCTAAA
73959965 ACCAAAGAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
6 4 0.07
7 54 0.93
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.18
Consensus pattern (7 bp):
CCTAAAC
Found at i:73960469 original size:126 final size:129
Alignment explanation
Indices: 73960244--73961174 Score: 838
Period size: 140 Copynumber: 6.9 Consensus size: 129
73960234 ACATACTATT
* * * * *
73960244 GGAC-AAAGCTAACTCTTATTTAAGTGTTGCCTTAGGCATGCATATACCATCTCTTATACAAAGA
1 GGACAAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
* * * *
73960308 GTTGGCCAAAGCATATGTTGACAAGTCTATCCCAACACTTAGGAAAGTGTTGGC-ATAGTCTT-
66 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCAATAGTCTTA
* **
73960370 GGACAAAA-CCGACTCTTATTTAAAAGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
1 GGACAAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
* * *
73960434 GTTGGCCAAAGTGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGACCCAAATGTGTA
66 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCG--CC-AA----TA
* *
73960499 GGCATA
124 GTCTTA
* * * *
73960505 GTGTTCGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTGTACA
1 G-G-AC-A-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACA
* * ** * * * * * *
73960570 AAAAGTTGACCAAAAAGTATGTCGACAAGTCTATCCCAACACTTAGGAAAATGTCGTC-TTAGGA
62 AAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCAATA-GT
73960634 C-T-
126 CTTA
* * * *
73960636 GGAC-AAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGA
1 GGACAAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
* *
73960700 GTTGGCCAAAGCATATGTTGGCAAGTCTAT-CCAACACTTAGGAAAGTGTCGCCCCAAAAATGTC
66 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCG--CC---AA--TA
73960764 GTCTTA
124 GTCTTA
* * * *
73960770 GGACTAGACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGC
1 -G----GACAAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATAC
* *
73960835 AAAGAGCTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAA
61 AAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCG--CC--AA
*
73960900 GTGTCGTCTTA
122 ---TAGTCTTA
* * **
73960911 GGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATTT
1 GG-----ACAAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATAC
* * * * *
73960976 AAAGAGTTGGCGAAAGCGTATGTTGGCAAGTCTATCCCAACACCTACGAAA-TGTCACCCCAAAA
61 AAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGT--CGCCAATA
73961040 GTGTCGCCTTA
124 --GT---CTTA
73961051 GGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACA
1 GGAC---A-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACA
* * * * * *
73961116 AATAGTTGGCTAAACCGTATATTGGCCAGTCTATCCCGACACTTAGGAAAGTGTCGCCA
62 AAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCA
73961175 CAAAAGTGTC
Statistics
Matches: 676, Mismatches: 78, Indels: 90
0.80 0.09 0.11
Matches are distributed among these distances:
125 20 0.03
126 177 0.26
127 4 0.01
128 1 0.00
129 1 0.00
130 2 0.00
131 1 0.00
132 5 0.01
133 4 0.01
134 5 0.01
135 4 0.01
136 2 0.00
137 3 0.00
138 9 0.01
139 100 0.15
140 203 0.30
141 134 0.20
142 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (129 bp):
GGACAAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGA
GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCAATAGTCTTA
Found at i:73960611 original size:140 final size:140
Alignment explanation
Indices: 73960371--73961193 Score: 889
Period size: 140 Copynumber: 6.0 Consensus size: 140
73960361 CATAGTCTTG
* * ** *
73960371 GACAAAACCGACTCTTATTTAAAAGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
** * * *
73960436 TGGCCAAAGTGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGACCCAAATGTGTAGG
66 TGGCCAAACAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGG
* *
73960501 CATAGTG-TTC
131 CTTAG-GATTA
* * * * *
73960511 GACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTGTACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * * * *
73960576 TGACCAAAAAGTATGTCGACAAGTCTATCCCAACACTT-----A--G--G----AAAA-TGTCGT
66 TGGCCAAACAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGG
* *
73960627 CTTAGGACTG
131 CTTAGGATTA
* * *
73960637 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * *
73960702 TGGCCAAAGCA-TATGTTGGCAAGTCTAT-CCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCG
66 TGGCCAAA-CAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCG
* *
73960765 TCTTAGGACTA
130 GCTTAGGATTA
* * *
73960776 GACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
* * *
73960841 CTGGCCAAAGCA-TATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTC
65 TTGGCCAAA-CAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTC
* *
73960905 GTCTTAGGACTA
129 GGCTTAGGATTA
* * **
73960917 CACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATTTAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAG
* * * *
73960982 TTGGCGAAAGC-GTATGTTGGCAAGTCTATCCCAACACCTACGAAA-TG-TCACCCCAAAAGTGT
65 TTGGCCAAA-CAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGA-CCCAAAAGTGT
* *
73961044 CGCCTTAGGACTA
128 CGGCTTAGGATTA
* *
73961057 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAATAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
* * * * * *
73961122 TGGCTAAACCGTATATTGGCCAGTCTATCCCGACACTTAGGAAAGTGTCG-CCACAAAAGTGTCG
66 TGGCCAAACAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACC-CAAAAGTGTCG
*
73961186 TCTTAGGA
130 GCTTAGGA
73961194 CTATTTTGTT
Statistics
Matches: 597, Mismatches: 62, Indels: 48
0.84 0.09 0.07
Matches are distributed among these distances:
125 10 0.02
126 88 0.15
127 4 0.01
130 1 0.00
131 1 0.00
132 1 0.00
133 1 0.00
134 1 0.00
135 1 0.00
138 5 0.01
139 113 0.19
140 227 0.38
141 144 0.24
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (140 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGT
TGGCCAAACAGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGG
CTTAGGATTA
Found at i:73960719 original size:266 final size:266
Alignment explanation
Indices: 73960245--73961171 Score: 1074
Period size: 266 Copynumber: 3.4 Consensus size: 266
73960235 CATACTATTG
* * * * *
73960245 GACAAAGCTAACTCTTATTTAAGTGTTGCCTTAGGCATGCATATACCATCTCTTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
* * * * *
73960310 TGGCCAAAGCATATGTTGACAAGTCTATCCCAACACTTAGGAAAGTGTTGGCATA-GTCTTGGAC
66 TGGCCAAAGCATATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGAC-TGGAC
* * ** *
73960374 AAAACCGACTCTTATTTAAAAGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTGG
130 AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGG
* * * * *
73960439 CCAAAGTGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGACCCAAATGTGTAGGCAT
195 CCAAAGCGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGCCTT
* *
73960504 AGTG-TTC
260 AG-GACTA
* * * *
73960511 GACAAAGCCGACTCTTATTTAAGCGTTGCCTTAAGCATGCATATCCCAACCCTTGTACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
* * *
73960576 TGACCAAA-AAGTATGTCGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGACTGGAC
66 TGGCCAAAGCA-TATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGACTGGAC
* * *
73960640 AAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAGTTGG
130 AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGG
* * * * *
73960705 CCAAAGCATATGTTGGCAAGTCTA-TCCAACACTTAGGAAAGTGTCGCCCCAAAAATGTCGTCTT
195 CCAAAGCGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGCCTT
73960769 AGGACTA
260 AGGACTA
* * * *
73960776 GACAAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATACATATCGCAACCCTTATGCAAAGAG
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAG
* *
73960841 CTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGCCCCAAAAGTGTCG
65 TTGGCCAAAGCATATGTTGACAAGTCTATCCCAACACTT-----A--G--G----AAAA-TGTCG
** *
73960906 TCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCT
116 TCTTAGGACTGGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCT
** * * * * *
73960971 TATTTAAAGAGTTGGCGAAAGCGTATGTTGGCAAGTCTATCCCAACACCTACGAAA-TG-TCACC
180 TATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGA-C
73961034 CCAAAAGTGTCGCCTTAGGACTA
244 CCAAAAGTGTCGCCTTAGGACTA
*
73961057 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAATAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
* * * * * * * *
73961122 TGGCTAAACCGTATATTGGCCAGTCTATCCCGACACTTAGGAAAGTGTCG
66 TGGCCAAAGCATATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCG
73961172 CCACAAAAGT
Statistics
Matches: 560, Mismatches: 79, Indels: 44
0.82 0.12 0.06
Matches are distributed among these distances:
264 1 0.00
265 40 0.07
266 276 0.49
267 6 0.01
271 2 0.00
273 2 0.00
275 2 0.00
279 4 0.01
280 105 0.19
281 109 0.19
282 13 0.02
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (266 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGT
TGGCCAAAGCATATGTTGACAAGTCTATCCCAACACTTAGGAAAATGTCGTCTTAGGACTGGACA
AAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGC
CAAAGCGTATGTTGGCAAGTCTATTCCAACACTTAGGAAAGTGTTGACCCAAAAGTGTCGCCTTA
GGACTA
Found at i:73961331 original size:25 final size:23
Alignment explanation
Indices: 73961303--73961436 Score: 106
Period size: 25 Copynumber: 5.3 Consensus size: 23
73961293 AATAATATAT
*
73961303 ATATAAAACAGTTTAAAGATGAATA
1 ATATAAAACAATTTAAA-AT-AATA
*
73961328 ATATATATAACAACTTAAAATAATA
1 ATATA-A-AACAATTTAAAATAATA
*
73961353 ATATATGAAACAATTTAAAATAGTA
1 ATATA--AAACAATTTAAAATAATA
* *
73961378 TATAATAAAACAGTTCAAAATAAATA
1 -AT-ATAAAACAATTTAAAAT-AATA
73961404 CTATATAAAAACAATTTAAAATGAATA
1 --ATAT-AAAACAATTTAAAAT-AATA
73961431 ATATAA
1 ATATAA
73961437 TATATAAAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 17
0.76 0.09 0.14
Matches are distributed among these distances:
24 2 0.02
25 45 0.50
26 11 0.12
27 32 0.36
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (23 bp):
ATATAAAACAATTTAAAATAATA
Found at i:73961339 original size:27 final size:25
Alignment explanation
Indices: 73961262--73961435 Score: 152
Period size: 27 Copynumber: 6.5 Consensus size: 25
73961252 AAGAAAAACG
*
73961262 AAATAAATAACATATAAAACAATTTGAAA
1 AAAT-AATAATATATAAAACAATTT---A
*
73961291 TAAATAATATATATATAAAACAGTTTA
1 -AAATAATA-ATATATAAAACAATTTA
* *
73961318 AAGATGAATAATATATATAACAACTTA
1 AA-AT-AATAATATATAAAACAATTTA
*
73961345 AAATAATAATATATGAAACAATTTA
1 AAATAATAATATATAAAACAATTTA
* * *
73961370 AAATAGT-ATATAATAAAACAGTTCA
1 AAATAATAATAT-ATAAAACAATTTA
*
73961395 AAATAAATACTATATAAAAACAATTTA
1 AAAT-AATAATATAT-AAAACAATTTA
73961422 AAATGAATAATATA
1 AAAT-AATAATATA
73961436 ATATATAAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
24 4 0.03
25 38 0.32
26 8 0.07
27 43 0.36
28 4 0.03
29 4 0.03
30 18 0.15
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (25 bp):
AAATAATAATATATAAAACAATTTA
Found at i:73961466 original size:33 final size:32
Alignment explanation
Indices: 73961396--73961466 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
73961386 AACAGTTCAA
* *
73961396 AATAA-ATACTATATAAAAACAATTTAAAATG
1 AATAATATAATATATAAAAACAACTTAAAATG
*
73961427 AATAATATAATATATAAAAGAGAACTTAAAAT-
1 AATAATATAATATATAAAA-ACAACTTAAAATG
73961459 AAGTAATA
1 AA-TAATA
73961467 ACTAAACAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 5 0.15
32 14 0.41
33 15 0.44
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (32 bp):
AATAATATAATATATAAAAACAACTTAAAATG
Found at i:73968861 original size:44 final size:44
Alignment explanation
Indices: 73968796--73969377 Score: 299
Period size: 44 Copynumber: 12.7 Consensus size: 44
73968786 CACTTTAATT
*
73968796 TGCTCCACTGCAATTTCAGGGAGATAAGATTAGTAGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATC
* *
73968840 TGCTCCACTGTAACTTTAGGGAGATAAGATTTGCTATCTTGTAGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA--T--TA----GTAGCTTCAATC
** * * * * * *
73968892 TGCTCCACTATAACTTTAAGGAGATAAGGTTTATTATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAA-GATTAGTAGCTTCAATC
* * * ***
73968937 TGCTCCACTGCAACTTCAAGGAGATAAGATTTACTATCTTTGGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATC
* * * * * *
73968982 TACTCCATTACAACTTCAGGGAGATAAGATTTGTGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATC
** *
73969026 TGCTCCACTGCAACTTCAAAGAGATAAGATTTGTAGCCTGTCATCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG-C--T--TCAATC
* ** * *
73969075 TGCTCCACTGTAACTTCAGGGAGATAAAATTTGTTTATTTTTAGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGAT--AA---G---ATTAGTAGCTTCAATC
* * * * * * *
73969127 TGTTCCGCTGCAACTTCAGGGAAATAAGATTCGCTATCTTTAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAGCTTCAATC
* * * * ** *
73969172 TGCTCCACTACAATTTTAGGGAGATAAGACTCA-TAATTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATC
* * ** * *
73969216 TGCTCTACTGCAAGTTCAGATAGATAAGGTTTA-TAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAA-GATTAGTAGCTTCAATC
* * * * *
73969260 TGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTT-AGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAGCTTCA-ATC
* * ** * *
73969305 TACTCCACTGCAGCTTCAGAAAGATAAGATCT-GTAACTTCAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGAT-TAGTAGCTTCAATC
* *
73969349 TGCTCGACTGTAACTTCAGGGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
73969378 CTTGCCACAA
Statistics
Matches: 415, Mismatches: 92, Indels: 62
0.73 0.16 0.11
Matches are distributed among these distances:
43 3 0.01
44 160 0.39
45 138 0.33
46 3 0.01
47 2 0.00
48 2 0.00
49 29 0.07
50 2 0.00
51 3 0.01
52 62 0.15
53 1 0.00
54 2 0.00
56 1 0.00
57 7 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATC
Found at i:73968930 original size:52 final size:52
Alignment explanation
Indices: 73968828--73968976 Score: 168
Period size: 52 Copynumber: 3.0 Consensus size: 52
73968818 GATAAGATTA
* * *
73968828 GTAGCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGCTATCTT
1 GTAGCTTCAATCTGCTCCACTATAACTTTAAGGAGATAAGATTTACTATCTT
*
73968880 GTAGCTTCAATCTGCTCCACTATAACTTTAAGGAGATAAG-GTT--TA---T
1 GTAGCTTCAATCTGCTCCACTATAACTTTAAGGAGATAAGATTTACTATCTT
* * ** *
73968926 -TATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGATTTACTATCTT
1 GTAGCTTCAATCTGCTCCACTATAACTTTAAGGAGATAAGATTTACTATCTT
73968977 TGGTCTACTC
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
45 34 0.41
46 3 0.04
48 2 0.02
49 2 0.02
51 3 0.04
52 38 0.46
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (52 bp):
GTAGCTTCAATCTGCTCCACTATAACTTTAAGGAGATAAGATTTACTATCTT
Found at i:73968952 original size:45 final size:45
Alignment explanation
Indices: 73968884--73969377 Score: 187
Period size: 45 Copynumber: 10.8 Consensus size: 45
73968874 TATCTTGTAG
* * * *
73968884 CTTCAATCTGCTCCACTATAACTTTAAGGAGATAAGGTTTATTAT
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTACTAT
* *
73968929 CTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGATTTACTAT
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTACTAT
*** * * * * **
73968974 CTTTGGTCTACTCCATTACAACTTCAGGGAGATAAGATTT-GTGG
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTACTAT
* * * *
73969018 CTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGATTTGTAGCCTGT
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA-TT-TA--CTAT
* ** * * * *
73969067 CATCAATCTGCTCCACTGTAACTTCAGGGAGATAAAATTTGTTTATTTTTAG
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA----TTTA---CTAT
* * * * * * * **
73969119 CTTTAATTTGTTCCGCTGCAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTACTAT
* * * * * * *
73969164 CTTTAGTCTGCTCCACTACAATTTTAGGGAGATAAGACTCA-TAAT
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTACT-AT
* * * * * * *
73969209 -TTCAACCTGCTCTACTGCAAGTTC-AGATAGATAAGGTTTA-TAG
1 CTTCAATCTGCTCCACTACAACTTCAAG-GAGATAAGATTTACTAT
* * * * *
73969252 CTTTAATCTGCTCTACTGCAACTT-TAGAGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAAG-GAGATAAGATTTACTAT
* * * * * * *
73969297 CTT-AGATCTACTCCACTGCAGCTTC-AGAAAGATAAGATCT-GTAA
1 CTTCA-ATCTGCTCCACTACAACTTCAAG-GAGATAAGATTTACTAT
* * ** *
73969341 CTTCAATTTGCTCGACTGTAACTTCAGGGAGATAAGA
1 CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
73969378 CTTGCCACAA
Statistics
Matches: 339, Mismatches: 92, Indels: 37
0.72 0.20 0.08
Matches are distributed among these distances:
43 2 0.01
44 121 0.36
45 146 0.43
46 1 0.00
48 2 0.01
49 33 0.10
51 2 0.01
52 32 0.09
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGATTTACTAT
Found at i:73969228 original size:190 final size:185
Alignment explanation
Indices: 73968944--73969292 Score: 403
Period size: 190 Copynumber: 1.9 Consensus size: 185
73968934 GTCTGCTCCA
* * * *
73968944 CTGCAACTTCAAGGAGATAAGATTTACTATCTTTGGTCTACTCCATTACAACTTCAGGGAGATAA
1 CTGCAACTTCAAGGAAATAAGATTCACTATCTTTAGTCTACTCCACTACAACTTCAGGGAGATAA
* ** ** * *
73969009 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGATTTGTAGCCTGTCATCAAT
66 GACTCATGAATTTAACCTGCTCCACTGCAACTTCAAAGAGATAAGATTTATAG-CT-T--T-AAT
* *
73969074 CTGCTCCACTGTAACTTCAGGGAGATAAAATTTGTTTATTTTTAGCTTTAATTTGTTCCG
126 CTGCTCCACTGCAACTTCAGAGAGATAAAATTTGTTTATTTTTAGCTTTAATTTGTTCCG
* * * * *
73969134 CTGCAACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTACAATTTTAGGGAGATAA
1 CTGCAACTTCAAGGAAATAAGATTCACTATCTTTAGTCTACTCCACTACAACTTCAGGGAGATAA
* * * * *
73969199 GACTCAT-AATTTCAACCTGCTCTACTGCAAGTTCAGATAGATAAGGTTTATAGCTTTAATCTGC
66 GACTCATGAATTT-AACCTGCTCCACTGCAACTTCAAAGAGATAAGATTTATAGCTTTAATCTGC
* * *
73969263 TCTACTGCAACTTTAGAGAGATAAGATTTG
130 TCCACTGCAACTTCAGAGAGATAAAATTTG
73969293 CTATCTTAGA
Statistics
Matches: 132, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
185 32 0.24
186 1 0.01
188 1 0.01
189 5 0.04
190 93 0.70
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (185 bp):
CTGCAACTTCAAGGAAATAAGATTCACTATCTTTAGTCTACTCCACTACAACTTCAGGGAGATAA
GACTCATGAATTTAACCTGCTCCACTGCAACTTCAAAGAGATAAGATTTATAGCTTTAATCTGCT
CCACTGCAACTTCAGAGAGATAAAATTTGTTTATTTTTAGCTTTAATTTGTTCCG
Found at i:73975181 original size:26 final size:26
Alignment explanation
Indices: 73975142--73975195 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
73975132 CACCAGACAT
73975142 TATTATGTCCGAGAAACTCTTAGTTG
1 TATTATGTCCGAGAAACTCTTAGTTG
*
73975168 TATTATGTCTGAGAAACTCTTAGTTG
1 TATTATGTCCGAGAAACTCTTAGTTG
73975194 TA
1 TA
73975196 CTTTACAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.41
Consensus pattern (26 bp):
TATTATGTCCGAGAAACTCTTAGTTG
Found at i:73980051 original size:25 final size:25
Alignment explanation
Indices: 73979947--73980116 Score: 123
Period size: 25 Copynumber: 6.6 Consensus size: 25
73979937 AAAGAAAAAC
73979947 AAAATAAATAATATATAAAGCAATTT
1 AAAATAAATAATATATAAA-CAATTT
* * * *
73979973 GAAATAAAAAATATAAAAAAATAGTTT
1 AAAATAAATAATATATAAACA-A-TTT
* * *
73980000 AAAGATGAATAATATAT-AGCAACTT
1 AAA-ATAAATAATATATAAACAATTT
73980025 AAAAT-AATAATATATGAAACAATTT
1 AAAATAAATAATATAT-AAACAATTT
* * *
73980050 AAAAT-AGT-ATATAATATAACAGTTC
1 AAAATAAATAATAT-ATA-AACAATTT
*
73980075 AAAATAAATACTATATAAAAACAATTT
1 AAAATAAATA--ATATATAAACAATTT
*
73980102 AAAATGAATAATATA
1 AAAATAAATAATATA
73980117 ATATATAAAA
Statistics
Matches: 112, Mismatches: 21, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
23 10 0.09
24 7 0.06
25 37 0.33
26 20 0.18
27 22 0.20
28 12 0.11
29 4 0.04
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29
Consensus pattern (25 bp):
AAAATAAATAATATATAAACAATTT
Found at i:73980064 original size:52 final size:55
Alignment explanation
Indices: 73979974--73980123 Score: 138
Period size: 52 Copynumber: 2.9 Consensus size: 55
73979964 AAGCAATTTG
* * * * **
73979974 AAATAAAAAATATAAAAAAATAGTTTAAAGATGAATAATAT-ATA-GCA-ACTT-A
1 AAATAAATAATATATAAAAACAATTTAAA-ATGAATAATATAATATATACACTTCA
* * *
73980026 AAAT-AATAATATAT-GAAACAATTTAAAAT-AGT-ATATAATATA-ACAGTTCA
1 AAATAAATAATATATAAAAACAATTTAAAATGAATAATATAATATATACACTTCA
*
73980076 AAATAAATACTATATAAAAACAATTTAAAATGAATAATATAATATATA
1 AAATAAATAATATATAAAAACAATTTAAAATGAATAATATAATATATA
73980124 AAAGAGAACT
Statistics
Matches: 78, Mismatches: 11, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
47 4 0.05
48 6 0.08
49 5 0.06
50 15 0.19
51 17 0.22
52 18 0.23
53 2 0.03
54 10 0.13
55 1 0.01
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (55 bp):
AAATAAATAATATATAAAAACAATTTAAAATGAATAATATAATATATACACTTCA
Found at i:73980147 original size:33 final size:32
Alignment explanation
Indices: 73980077--73980147 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
73980067 AACAGTTCAA
* *
73980077 AATAA-ATACTATATAAAAACAATTTAAAATG
1 AATAATATAATATATAAAAACAACTTAAAATG
*
73980108 AATAATATAATATATAAAAGAGAACTTAAAAT-
1 AATAATATAATATATAAAA-ACAACTTAAAATG
73980140 AAGTAATA
1 AA-TAATA
73980148 ACTAAATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 5 0.15
32 14 0.41
33 15 0.44
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (32 bp):
AATAATATAATATATAAAAACAACTTAAAATG
Found at i:73997547 original size:39 final size:39
Alignment explanation
Indices: 73997438--73997697 Score: 289
Period size: 39 Copynumber: 6.6 Consensus size: 39
73997428 GCTCCTCGTT
* * *
73997438 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
73997478 C-AA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
73997516 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
73997555 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
73997594 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
73997633 CAAATGCCTTCGGATCTTAGTCC-GAATATTGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
73997674 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
73997698 CATCATTCAA
Statistics
Matches: 196, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
38 30 0.15
39 136 0.69
40 25 0.13
41 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:74001952 original size:26 final size:26
Alignment explanation
Indices: 74001923--74002030 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74001913 TGGTACAAAT
74001923 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74001949 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74001975 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74002001 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74002027 TGAT
1 TGAT
74002031 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74003510 original size:27 final size:26
Alignment explanation
Indices: 74003477--74003539 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
74003467 AATTACTATA
* *
74003477 ATACCCCTATGTATGGAAAATTA-TGTT
1 ATACCCCTA-G-ATGCAAAATTACCGTT
*
74003504 ATACCCCTAGGTGCAAAATTACCGTT
1 ATACCCCTAGATGCAAAATTACCGTT
74003530 ATACCCCTAG
1 ATACCCCTAG
74003540 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.28
26 14 0.44
27 9 0.28
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCGTT
Done.