Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 222 of 320
Found at i:74003687 original size:27 final size:26
Alignment explanation
Indices: 74003644--74003784 Score: 140
Period size: 27 Copynumber: 5.2 Consensus size: 26
74003634 AGGAAGCGTC
* *
74003644 CTGGTGGCTATGTCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
74003671 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
74003698 CTGGTGGCTAC-GCCACGATTATCTGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGAT
* *
74003725 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
74003752 CTGGTGGCTCTGTCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
*
74003779 TTGGTG
1 CTGGTG
74003785 ACTTCATCAC
Statistics
Matches: 95, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
26 11 0.12
27 81 0.85
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:74003726 original size:54 final size:54
Alignment explanation
Indices: 74003644--74003760 Score: 189
Period size: 54 Copynumber: 2.2 Consensus size: 54
74003634 AGGAAGCGTC
* * *
74003644 CTGGTGGCTATGTCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTAGTGGCTCTACCACATATATCTGTT
* *
74003698 CTGGTGGCTACGCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTAGTGGCTCTACCACATATATCTGTT
74003752 CTGGTGGCT
1 CTGGTGGCT
74003761 CTGTCACAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTAGTGGCTCTACCACATATATCTGTT
Found at i:74003784 original size:54 final size:53
Alignment explanation
Indices: 74003644--74003784 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 53
74003634 AGGAAGCGTC
* * *
74003644 CTGGTGGCTATGTCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGTCACAA-TATCTGATCTGGTGGCTCTACCACATATATCTGTT
* *
74003698 CTGGTGGCTAC-GCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCT-CTGTCAC-AATATCTGATCTGGTGGCTCTACCACATATATCTGTT
*
74003752 CTGGTGGCTCTGTCACAATATCTGTATTTGGTG
1 CTGGTGGCTCTGTCACAATATCTG-ATCTGGTG
74003785 ACTTCATCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
53 8 0.11
54 66 0.88
55 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTCTGTCACAATATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:74010213 original size:23 final size:23
Alignment explanation
Indices: 74010165--74010215 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
74010155 GTGGTATAAA
** *
74010165 ATTTATACATTTGTAATAATTGT
1 ATTTATACAAATGTAATAATTAT
74010188 ATTTATACAAATGTAAT-ATATAT
1 ATTTATACAAATGTAATAAT-TAT
74010211 ATTTA
1 ATTTA
74010216 CTTATACTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (23 bp):
ATTTATACAAATGTAATAATTAT
Found at i:74010250 original size:18 final size:19
Alignment explanation
Indices: 74010224--74010264 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
74010214 TACTTATACT
74010224 TTAAGTATAAGATATT-TA
1 TTAAGTATAAGATATTATA
* *
74010242 TTAATTATAATATATTATA
1 TTAAGTATAAGATATTATA
74010261 TTAA
1 TTAA
74010265 CTATTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTAAGTATAAGATATTATA
Found at i:74011105 original size:13 final size:13
Alignment explanation
Indices: 74011083--74011115 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74011073 AAGGATTTGT
74011083 TTAT-TAAACTAA
1 TTATCTAAACTAA
74011095 TTATCTAAACTAA
1 TTATCTAAACTAA
*
74011108 TTAACTAA
1 TTATCTAA
74011116 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:74014030 original size:6 final size:5
Alignment explanation
Indices: 74014001--74014077 Score: 61
Period size: 5 Copynumber: 14.8 Consensus size: 5
74013991 TATGTATTTC
* *
74014001 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
74014049 AAAAAT AAAAT -AAAT AAAAT AAAAT AAAA
1 -AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
74014078 ATGAGAATGA
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
3 3 0.05
4 4 0.07
5 26 0.44
6 26 0.44
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:74014069 original size:14 final size:15
Alignment explanation
Indices: 74014001--74014076 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 15
74013991 TATGTATTTC
74014001 AAAATAAAAT-AATA
1 AAAATAAAATAAATA
* *
74014015 AAATTGAAATGAAAATA
1 AAAATAAAAT--AAATA
*
74014032 AAAATCAAAAGAAAAATA
1 AAAAT--AAA-ATAAATA
74014050 AAAATAAAATAAAT-
1 AAAATAAAATAAATA
74014064 AAAATAAAATAAA
1 AAAATAAAATAAA
74014077 AATGAGAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
14 21 0.42
15 5 0.10
16 3 0.06
17 8 0.16
18 10 0.20
19 2 0.04
20 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (15 bp):
AAAATAAAATAAATA
Found at i:74018875 original size:22 final size:23
Alignment explanation
Indices: 74018850--74018892 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
74018840 TTGTCCCTAG
74018850 CACACCCGTGGTTTT-CTATCCC
1 CACACCCGTGGTTTTCCTATCCC
*
74018872 CACACCCGTGTTTTTCCTATC
1 CACACCCGTGGTTTTCCTATC
74018893 AAGTTCACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.14, C:0.40, G:0.12, T:0.35
Consensus pattern (23 bp):
CACACCCGTGGTTTTCCTATCCC
Found at i:74022217 original size:13 final size:13
Alignment explanation
Indices: 74022195--74022227 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74022185 AATGTTTTGT
74022195 TTAT-TAAACTAA
1 TTATCTAAACTAA
74022207 TTATCTAAACTAA
1 TTATCTAAACTAA
*
74022220 TTAACTAA
1 TTATCTAA
74022228 TTTAATTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:74038329 original size:132 final size:132
Alignment explanation
Indices: 74038081--74038560 Score: 642
Period size: 132 Copynumber: 3.7 Consensus size: 132
74038071 TCATTGAACG
* * * * ** **
74038081 AACGGGAAATTGCAACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAACACCGAGTATTAC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATACCAAACATCGC
* * * * * * *
74038145 ATTTGTTTTAAAG-AGTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATTACTTTGAG
66 CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATTATTTTGAG
74038209 CA
131 CA
* * * *
74038211 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATTGTCAAATATCGAACATCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATACCAAACATCGC
* *
74038276 CTTCGTTTTAAAGGATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATCATTTTGAG
66 CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATTATTTTGAG
74038341 CA
131 CA
* * * *
74038343 AACGAGAAATTGCAACCCAACACATTAGGGCACGATTCCGTGAATTGCCAAATACCAAACCTCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATACCAAACATCGC
* ***
74038408 CTTCGTTTTAAAGAATCTTTAGAAGACATGGGTGAAATTTTGAAGGGATATTCGATTATTTTGAG
66 CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATTATTTTGAG
74038473 CA
131 CA
* *
74038475 AACGTGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATC-TCG
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATACCAAA-CATCG
*
74038539 TCTTCGTTTTAAAGAATTTTTA
65 CCTTCGTTTTAAAGAATTTTTA
74038561 AATGAATAAT
Statistics
Matches: 309, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
130 37 0.12
131 29 0.09
132 242 0.78
133 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (132 bp):
AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATACCAAACATCGC
CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATTATTTTGAG
CA
Found at i:74040984 original size:19 final size:18
Alignment explanation
Indices: 74040960--74040995 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74040950 CACGGAGGTG
74040960 GTACGGTCACTGGAGGCTT
1 GTACGG-CACTGGAGGCTT
*
74040979 GTACGGCGCTGGAGGCT
1 GTACGGCACTGGAGGCT
74040996 GCTGCGGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.14, C:0.22, G:0.42, T:0.22
Consensus pattern (18 bp):
GTACGGCACTGGAGGCTT
Found at i:74041606 original size:45 final size:44
Alignment explanation
Indices: 74041530--74042262 Score: 192
Period size: 45 Copynumber: 16.8 Consensus size: 44
74041520 GCTTGCTTAA
* ** * *
74041530 ATCTGCTTCACTGTAACTTCAGGAAGCCAAGATTCGTTGTCTTCG
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTC-TTGTCTTCG
* * **
74041575 ATTTGCTCCACTGCAACTTCAGGGAGACAAGA-TCTACAATCTTC-
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTCT--TGTCTTCG
* * * * * **
74041619 AGCCTACTCCACTACAACTTTAGGGAG-CTAG-TACTTG-CTTAA
1 A-TCTGCTCCACTACAACTTCAGGGAGACAAGATTCTTGTCTTCG
* * * * *
74041661 ATCTGCTTCACTACAAATTCAGGAAGCCAAGATTCGTCGTCTTCG
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTC-TTGTCTTCG
* * * * *
74041706 ATTTGCCCCACTGCAACTTCAGGGAGACAAGA-TCTACTATCGTC-
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTCT--TGTCTTCG
* * * * **
74041750 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGA-T-TTG-CTTAA
1 A-TCTGCTCCACTACAACTTCAGGGAGAC-AAGATTCTTGTCTTCG
* * * * *
74041792 ATCTGCTTCACTACAACTTCAAGAAGCCAAGATTCGTCGTCTTCG
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTC-TTGTCTTCG
* * * ** *
74041837 ATTTGCTCCACTGCAACTTCAGAGAGACAAGA-TCTACAATATTC-
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTCT--TGTCTTCG
* * * * * **
74041881 AGCCTACTCCACTACAACTTTAGAGAG-CTAGGA--CTTG-CTTAA
1 A-TCTGCTCCACTACAACTTCAGGGAGAC-AAGATTCTTGTCTTCG
* * * * * *
74041923 ATCTGCTTCACTGCAACTTCAAGAAGCCAAGATTCATCGTCTTCG
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTC-TTGTCTTCG
* * * * *
74041968 ATTTG-TCCCACTGCAACTTCAGGGAGACAAGA-TCTATAATATT-T
1 ATCTGCT-CCACTACAACTTCAGGGAGACAAGATTCT-T-GTCTTCG
* * * * * * **
74042012 AGCCTACTCCACTACAACTTTAGGGAGA-TAGA-ACTT-CCTTAA
1 A-TCTGCTCCACTACAACTTCAGGGAGACAAGATTCTTGTCTTCG
* * * * *
74042054 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCG
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTC-TTGTCTTCG
* * * * ** *
74042099 ATTTGCCCCACTACAACTTCATGGACG-CAAGATATATAATATTC-
1 ATCTGCTCCACTACAACTTCAGGGA-GACAAGAT-TCTTGTCTTCG
* * * **
74042143 AGCCTACTCCACTACAACTTTAGGGAG-CAAGGA--CTTG-CTTAA
1 A-TCTGCTCCACTACAACTTCAGGGAGACAA-GATTCTTGTCTTCG
* * * * **
74042185 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCATCTTCG
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTC-TTGTCTTCG
* *
74042230 ATTTGCCCCACTACAACTTCAGGGAGACAAGAT
1 ATCTGCTCCACTACAACTTCAGGGAGACAAGAT
74042263 CTACATTCTG
Statistics
Matches: 480, Mismatches: 159, Indels: 98
0.65 0.22 0.13
Matches are distributed among these distances:
41 112 0.23
42 19 0.04
43 10 0.02
44 41 0.09
45 295 0.61
46 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTACAACTTCAGGGAGACAAGATTCTTGTCTTCG
Found at i:74041703 original size:131 final size:131
Alignment explanation
Indices: 74041428--74042267 Score: 1240
Period size: 131 Copynumber: 6.4 Consensus size: 131
74041418 CTAGAGATAT
* * * * *
74041428 AAGATTCATCATCTTCGATCTGCTCCACTGCAACTTCGGGGAGACAAGATCTACAATCTTCAGCC
1 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCC
** ** * *
74041493 TGTTACC-CTACGGC-TTAGGGAGTTAAGG-CTTGCTTAAATCTGCTTCACTGTAACTTCAGGAA
66 TACT-CCACTACAACTTTAGGGAGCT-AGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAA
74041555 GCC
129 GCC
* *
74041558 AAGATTCGTTGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCC
1 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCC
* * *
74041623 TACTCCACTACAACTTTAGGGAGCTAGTACTTGCTTAAATCTGCTTCACTACAAATTCAGGAAGC
66 TACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
74041688 C
131 C
* * **
74041689 AAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACTATCGTCAGCC
1 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCC
* * *
74041754 TACTCCACTACAACTTTAGGGAGCTAGGATTTGCTTAAATCTGCTTCACTACAACTTCAAGAAGC
66 TACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
74041819 C
131 C
*
74041820 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGAGAGACAAGATCTACAATATTCAGCC
1 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCC
* *
74041885 TACTCCACTACAACTTTAGAGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAAGAAGC
66 TACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
74041950 C
131 C
* * *
74041951 AAGATTCATCGTCTTCGATTTG-TCCCACTGCAACTTCAGGGAGACAAGATCTATAATATTTAGC
1 AAGATTCGTCGTCTTCGATTTGCT-CCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGC
* * *
74042015 CTACTCCACTACAACTTTAGGGAGATAGAACTTCCTTAAATCTGCTTCACTGCAACTTCAGGAAG
65 CTACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAG
74042080 CC
130 CC
* * * * *
74042082 AAGATTCGTCGTCTTCGATTTGCCCCACTACAACTTCATGGACG-CAAGATATATAATATTCAGC
1 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGA-GACAAGATCTACAATATTCAGC
*
74042146 CTACTCCACTACAACTTTAGGGAGCAAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAG
65 CTACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAG
74042211 CC
130 CC
* * *
74042213 AAGATTCGTCATCTTCGATTTGCCCCACTACAACTTCAGGGAGACAAGATCTACA
1 AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACA
74042268 TTCTGTTTCA
Statistics
Matches: 650, Mismatches: 53, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
129 2 0.00
130 71 0.11
131 576 0.89
132 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (131 bp):
AAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCC
TACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAGC
C
Found at i:74042390 original size:64 final size:64
Alignment explanation
Indices: 74042289--74042412 Score: 178
Period size: 64 Copynumber: 1.9 Consensus size: 64
74042279 AGGCTTATGC
* * * *
74042289 TTATGCCAAATAATTAGGATGCTATGATCAACATGAATCAATTGTTCCTAACTAGATGTGATGT
1 TTATGCCAAATAATTAGAAGGCTATGATCAACATGAATCAAATGCTCCTAACTAGATGTGATGT
* *
74042353 TTATGTCAAATAATTAGAAGGCTATGATCGAA-GTGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGAAGGCTATGATC-AACATGAATCAAATGCTCCTAACTAGATGTG
74042413 TTACGAATGA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 51 0.96
65 2 0.04
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (64 bp):
TTATGCCAAATAATTAGAAGGCTATGATCAACATGAATCAAATGCTCCTAACTAGATGTGATGT
Found at i:74043524 original size:6 final size:6
Alignment explanation
Indices: 74043498--74043541 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
74043488 TGGCCTCTCC
*
74043498 TTTTC- TTTTCTT TTCTTCT TTTTCT TTTTCT TTTTCT TATTCT T
1 TTTTCT TTTTC-T TT-TTCT TTTTCT TTTTCT TTTTCT TTTTCT T
74043542 ATTATTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
5 5 0.14
6 22 0.63
7 5 0.14
8 3 0.09
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:74043563 original size:12 final size:12
Alignment explanation
Indices: 74043543--74043568 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74043533 CTTATTCTTA
74043543 TTATTATTATTG
1 TTATTATTATTG
74043555 TTATTATTATTG
1 TTATTATTATTG
74043567 TT
1 TT
74043569 TTTTTATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:74055363 original size:26 final size:28
Alignment explanation
Indices: 74055334--74055401 Score: 81
Period size: 26 Copynumber: 2.6 Consensus size: 28
74055324 CGTACTATAT
* *
74055334 ATACATATAATATA-ATTA-TTAAGAAA
1 ATACATACAATATATAATATTTAAGAAA
*
74055360 ATACATACAATATATAATATTTAAGAAT
1 ATACATACAATATATAATATTTAAGAAA
74055388 ATAC--ACAATATATA
1 ATACATACAATATATA
74055402 TGGTATTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 23 0.62
27 3 0.08
28 11 0.30
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (28 bp):
ATACATACAATATATAATATTTAAGAAA
Found at i:74055402 original size:28 final size:28
Alignment explanation
Indices: 74055330--74055418 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
74055320 CGGACGTACT
*
74055330 ATATATAC-ATATAATATAAT-TATTAAGA
1 ATATACACAATAT-ATATAATAT-TTAAGA
* *
74055358 AAATACATACA-ATATATAATATTTAAGA
1 ATATACACA-ATATATATAATATTTAAGA
** *
74055386 ATATACACAATATATATGGTATTTAAAA
1 ATATACACAATATATATAATATTTAAGA
74055414 ATATA
1 ATATA
74055419 GTATTAAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
27 1 0.02
28 44 0.90
29 3 0.06
30 1 0.02
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (28 bp):
ATATACACAATATATATAATATTTAAGA
Found at i:74055975 original size:3 final size:3
Alignment explanation
Indices: 74055835--74055959 Score: 74
Period size: 3 Copynumber: 41.0 Consensus size: 3
74055825 AATATTATAT
* * *
74055835 ATA ATA ATA ATA CTA GA-A ATA GTA ATA ACTA GTA ATA ATA ATA CATTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA A-TA ATA ATA ATA ATA -A-TA
* * * * ** * * *
74055883 AAA ATA ATT AT- ATG TTA ATA ACC AGA ATA TTA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
74055930 ATA ATA ATA ATA ATA ATA GTA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
74055960 TTAGGAATGA
Statistics
Matches: 92, Mismatches: 24, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
2 3 0.03
3 83 0.90
4 4 0.04
5 2 0.02
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:74056933 original size:52 final size:53
Alignment explanation
Indices: 74056868--74057003 Score: 177
Period size: 52 Copynumber: 2.6 Consensus size: 53
74056858 TGTGCGCCCG
*
74056868 TATAAGACTATAGCTGGGCTATGGCATCGGTGCAATGTGAT-ACGTG-TTCCTA
1 TATAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAACGTGATTCC-A
* * ** *
74056920 TATAAGACCATAGCTGGGCTATGGCGTCGATGTGATGTGATAATGTGATTCCA
1 TATAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAACGTGATTCCA
* *
74056973 TATAAGACCATATCTGGGATATGGCATCGGT
1 TATAAGACCATAGCTGGGCTATGGCATCGGT
74057004 ATTATATGTG
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
52 36 0.50
53 32 0.44
54 4 0.06
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (53 bp):
TATAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAACGTGATTCCA
Found at i:74057139 original size:57 final size:57
Alignment explanation
Indices: 74057070--74057183 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
74057060 TGACTATGTG
74057070 CAAGTCCATGGTTTTACCATGGCAATGTGATTGTGAAGCACTCAATTCCATTATTGT
1 CAAGTCCATGGTTTTACCATGGCAATGTGATTGTGAAGCACTCAATTCCATTATTGT
*
74057127 CAAGTCCGTGGTTTTACCATGGCAATGTGATTGTGAAGCACTCAATTCCATTATTGT
1 CAAGTCCATGGTTTTACCATGGCAATGTGATTGTGAAGCACTCAATTCCATTATTGT
74057184 TCCCTAATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (57 bp):
CAAGTCCATGGTTTTACCATGGCAATGTGATTGTGAAGCACTCAATTCCATTATTGT
Found at i:74061446 original size:22 final size:23
Alignment explanation
Indices: 74061418--74061502 Score: 124
Period size: 22 Copynumber: 3.9 Consensus size: 23
74061408 TACCGATATA
*
74061418 TCAGCTCGTAT-GAGCTTACTGT
1 TCAGCTCGAATAGAGCTTACTGT
74061440 TCAGCTC-AATAGAGCTTACTGT
1 TCAGCTCGAATAGAGCTTACTGT
74061462 TCAGCTC-AATAGAGCTTACTGT
1 TCAGCTCGAATAGAGCTTACTGT
*
74061484 TCAGCTCG-ATAGTGCTTAC
1 TCAGCTCGAATAGAGCTTAC
74061503 CATTTTAGTT
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
21 2 0.03
22 57 0.97
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (23 bp):
TCAGCTCGAATAGAGCTTACTGT
Found at i:74061479 original size:44 final size:45
Alignment explanation
Indices: 74061403--74061531 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 45
74061393 CAGCTCGTAT
*
74061403 GAGCTTACCGATATATCAGCTC-GTATGAGCTTACTGTTCAGCTCAATA
1 GAGCTTACC-AT-T-TCAGCTCAATA-GAGCTTACTGTTCAGCTCAATA
*
74061451 GAGCTTA-C-TGTTCAGCTCAATAGAGCTTACTGTTCAGCTCGATA
1 GAGCTTACCAT-TTCAGCTCAATAGAGCTTACTGTTCAGCTCAATA
* * * *
74061495 GTGCTTACCATTTTAGTTCATTAGAGCTTACTGTTCA
1 GAGCTTACCATTTCAGCTCAATAGAGCTTACTGTTCA
74061532 TTAGCTCAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
44 34 0.48
45 28 0.39
46 1 0.01
47 1 0.01
48 7 0.10
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (45 bp):
GAGCTTACCATTTCAGCTCAATAGAGCTTACTGTTCAGCTCAATA
Found at i:74065032 original size:18 final size:18
Alignment explanation
Indices: 74065011--74065055 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
74065001 ATATTTAAAA
*
74065011 TATATTTTTT-ATTATTTT
1 TATATTTTTTGAAT-TTTT
74065029 TATACTTTTTTGAATTTTT
1 TATA-TTTTTTGAATTTTT
74065048 TATATTTT
1 TATATTTT
74065056 AAAAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (18 bp):
TATATTTTTTGAATTTTT
Found at i:74071056 original size:11 final size:11
Alignment explanation
Indices: 74071040--74071064 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74071030 TTATATATAC
74071040 TAATAAAATAA
1 TAATAAAATAA
74071051 TAATAAAATAA
1 TAATAAAATAA
74071062 TAA
1 TAA
74071065 AATATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:74071064 original size:19 final size:20
Alignment explanation
Indices: 74071040--74071078 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
74071030 TTATATATAC
74071040 TAATAAAATAATA-ATAAAA
1 TAATAAAATAATATATAAAA
*
74071059 TAATAAAATATTATATAAAA
1 TAATAAAATAATATATAAAA
74071079 AATCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAATAAAATAATATATAAAA
Found at i:74073462 original size:14 final size:15
Alignment explanation
Indices: 74073433--74073465 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
74073423 CATGATATAT
74073433 ATAAAAAACAATAAC
1 ATAAAAAACAATAAC
*
74073448 ATAAAAAATAA-AAC
1 ATAAAAAACAATAAC
74073462 ATAA
1 ATAA
74073466 TAAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (15 bp):
ATAAAAAACAATAAC
Found at i:74073685 original size:16 final size:17
Alignment explanation
Indices: 74073601--74073687 Score: 60
Period size: 16 Copynumber: 5.1 Consensus size: 17
74073591 TAAAGAAATG
74073601 TAAAATAATA-TT-TAA
1 TAAAATAATACTTATAA
*
74073616 GAGAAATAATAC--ATAA
1 TA-AAATAATACTTATAA
74073632 TAAGTAATAAT-CATATATAA
1 TAA--AATAATAC-T-TATAA
74073652 TTAAAATAATACTTATAA
1 -TAAAATAATACTTATAA
*
74073670 TAAAATAAT-TTTATAA
1 TAAAATAATACTTATAA
74073686 TA
1 TA
74073688 TATAATATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 21
0.71 0.04 0.26
Matches are distributed among these distances:
15 2 0.03
16 21 0.36
17 15 0.26
18 5 0.09
19 7 0.12
20 5 0.09
21 3 0.05
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTTATAA
Found at i:74078081 original size:18 final size:19
Alignment explanation
Indices: 74078049--74078087 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
74078039 GCTGAAACAG
74078049 AAACCAAATAAAAATAATA
1 AAACCAAATAAAAATAATA
74078068 AAACCAAA-AAAAATAATA
1 AAACCAAATAAAAATAATA
74078086 AA
1 AA
74078088 TCAAAAGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (19 bp):
AAACCAAATAAAAATAATA
Found at i:74078408 original size:15 final size:15
Alignment explanation
Indices: 74078388--74078417 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74078378 ACACGCAAAG
*
74078388 ACAAACAGAAAAGAA
1 ACAAACAAAAAAGAA
74078403 ACAAACAAAAAAGAA
1 ACAAACAAAAAAGAA
74078418 CTATCATGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.13, G:0.10, T:0.00
Consensus pattern (15 bp):
ACAAACAAAAAAGAA
Found at i:74079765 original size:3 final size:3
Alignment explanation
Indices: 74079757--74079856 Score: 94
Period size: 3 Copynumber: 33.7 Consensus size: 3
74079747 AACAATTACC
* * * * * *
74079757 ATT ATT ATT ACT ATT ACT ATT ATT TTT ATT ACT ATT ATT ACT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
74079805 GTT ATT ATT ATT ACT ATT -GT ATT ATT ACT ATT ACT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
74079852 ATT AT
1 ATT AT
74079857 ATTTTCTTTC
Statistics
Matches: 75, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
2 1 0.01
3 74 0.99
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:74091765 original size:44 final size:44
Alignment explanation
Indices: 74091702--74091956 Score: 259
Period size: 44 Copynumber: 5.8 Consensus size: 44
74091692 TTGAGAATAA
*
74091702 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAG
* ** *
74091746 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACCGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAG
* * * * *
74091791 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTTTA-AAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATACAAG
*
74091836 -CTTATCTCCCTGAAGTTGTAGTGGAGCATG-TTGAAG-TCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTGAAGAT-ACAAG
* * *
74091879 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAG
* * *
74091924 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
74091957 ATCTCTTTGA
Statistics
Matches: 174, Mismatches: 26, Indels: 21
0.79 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 4 0.02
44 97 0.56
45 69 0.40
47 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAG
Found at i:74091807 original size:89 final size:88
Alignment explanation
Indices: 74091700--74091946 Score: 261
Period size: 89 Copynumber: 2.8 Consensus size: 88
74091690 CATTGAGAAT
*
74091700 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TCACAAGTCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAGTCTTATCTCCCTGAAGTT
74091764 GCAGTGGAACA-GACCGAAGAT-AGCA
65 GCAGTGGAACATG-CCGAAG-TCA-CA
* * * * *
74091789 AATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTTTA-AAG-CTTATCTCCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATACAAGTCTTATCTCCCTGAAGT
* * **
74091852 TGTAGTGGAGCATGTTGAAGTCACA
64 TGCAGTGGAACATGCCGAAGTCACA
* * * * *
74091877 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAGTCTTATCTCCCTGAAGTT
74091942 GCAGT
65 GCAGT
74091947 AGAGTAGATT
Statistics
Matches: 130, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
86 2 0.02
88 37 0.28
89 85 0.65
90 4 0.03
91 1 0.01
92 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCTTATCTCCCTGAAGTTG
CAGTGGAACATGCCGAAGTCACA
Found at i:74091941 original size:133 final size:131
Alignment explanation
Indices: 74091703--74092132 Score: 553
Period size: 133 Copynumber: 3.4 Consensus size: 131
74091693 TGAGAATAAT
*
74091703 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAG
*
74091768 TGGAACAGACCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTTTA
66 TGGAGCAGACCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGC-TTA
74091833 AA
130 AA
* *
74091835 GCTTATCTCCCTGAAGTTGTAGTGGAGCATGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGTA
1 -CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCA
*
74091900 GTGGAGCAGACTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATT--A---T-
65 GTGGAGCAGACCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTTA
74091959 --
130 AA
* * * * * * * * * *
74091959 C---TCT--TTGAAATTATAGTGGAACAGGTTAAAGCCGCAAGTCTTATTTCCTTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAG
* **
74092019 TGGAGCAGACCGAAGATAGCAAATCTTATCTATCTGAAGTTGCAGTAGACCAGATTAAAGCTATA
66 TGGAGCAGACCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCT-TA
74092084 AA
130 AA
* *
74092086 CCTTGTCTCCCTGAAGCTGTAGTGGAGCAGGTTGAAGTCACAAGTCT
1 -CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACAAGTCT
74092133 GGACTTAATA
Statistics
Matches: 253, Mismatches: 29, Indels: 30
0.81 0.09 0.10
Matches are distributed among these distances:
118 96 0.38
120 4 0.02
123 1 0.00
124 1 0.00
127 1 0.00
128 1 0.00
131 4 0.02
133 145 0.57
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (131 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGCAGACCGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTTAA
A
Found at i:74097551 original size:16 final size:17
Alignment explanation
Indices: 74097530--74097569 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
74097520 TTTCATGTGT
74097530 TATAAATT-ACATAATA
1 TATAAATTAACATAATA
74097546 TATAAAATTAACATAATA
1 TAT-AAATTAACATAATA
74097564 TA-AAAT
1 TATAAAT
74097570 ATTATAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (17 bp):
TATAAATTAACATAATA
Found at i:74100237 original size:5 final size:6
Alignment explanation
Indices: 74100222--74100247 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74100212 GATATTATCA
74100222 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
74100248 TCGGGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:74109112 original size:19 final size:18
Alignment explanation
Indices: 74109070--74109122 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
74109060 AAATACATTT
*
74109070 AAAACATAAAAATAAATA
1 AAAAAATAAAAATAAATA
**
74109088 TTAAAATAAGAAATAAATA
1 AAAAAATAA-AAATAAATA
*
74109107 AAAAAATAAAACTAAA
1 AAAAAATAAAAATAAA
74109123 ATAATTCTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (18 bp):
AAAAAATAAAAATAAATA
Found at i:74115772 original size:8 final size:8
Alignment explanation
Indices: 74115759--74115786 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
74115749 TAATGTTAAA
74115759 ATATATAC
1 ATATATAC
74115767 ATATATAC
1 ATATATAC
74115775 ATATATAC
1 ATATATAC
74115783 ATAT
1 ATAT
74115787 GAAAAATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATATAC
Found at i:74116021 original size:27 final size:25
Alignment explanation
Indices: 74115988--74116065 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 25
74115978 TGTAATAATG
74115988 ATATATACACAATATGGTATTAAGAA
1 ATATATACACAATATGGTATTAA-AA
* *
74116014 TATATATATACAATATAGTATTTAAAA
1 -ATATATACACAATATGGTA-TTAAAA
* *
74116041 ATATATACATAAGATGGTA-TAAAA
1 ATATATACACAATATGGTATTAAAA
74116065 A
1 A
74116066 CATGTACATG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
26 15 0.34
27 19 0.43
28 4 0.09
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (25 bp):
ATATATACACAATATGGTATTAAAA
Found at i:74116261 original size:21 final size:20
Alignment explanation
Indices: 74116224--74116334 Score: 91
Period size: 20 Copynumber: 5.3 Consensus size: 20
74116214 ATATATACAT
* *
74116224 ATATAAATAATAGTATTAGAA
1 ATATAAAT-ATAATATTAAAA
*
74116245 ATATACAATATAATATTATAA
1 ATATA-AATATAATATTAAAA
*
74116266 ATATACATATAATAGTATAAAAA
1 ATATAAATATAATA-T-T-AAAA
*
74116289 ATATAACTAATAATATT-AAA
1 ATATAAAT-ATAATATTAAAA
*
74116309 ATATATAATA-AATATAAAAA
1 ATATA-AATATAATATTAAAA
74116329 ATATAA
1 ATATAA
74116335 TATTGAACAC
Statistics
Matches: 75, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
19 6 0.08
20 25 0.33
21 23 0.31
22 5 0.07
23 10 0.13
24 6 0.08
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
ATATAAATATAATATTAAAA
Found at i:74116277 original size:20 final size:21
Alignment explanation
Indices: 74116224--74116333 Score: 84
Period size: 21 Copynumber: 5.2 Consensus size: 21
74116214 ATATATACAT
* *
74116224 ATATA-AATAATAGTATTAGAA
1 ATATACAAT-ATAATATTATAA
74116245 ATATACAATATAATATTATAA
1 ATATACAATATAATATTATAA
*
74116266 ATATAC-ATATAATAGTATAAA
1 ATATACAATATAATATTAT-AA
* *
74116287 AAATATAACTAATAATATTA-AA
1 ATATACAA-T-ATAATATTATAA
* * *
74116309 ATATATAATA-AATATAAAAA
1 ATATACAATATAATATTATAA
74116329 ATATA
1 ATATA
74116334 ATATTGAACA
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
19 6 0.08
20 19 0.25
21 28 0.37
22 13 0.17
23 1 0.01
24 8 0.11
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (21 bp):
ATATACAATATAATATTATAA
Found at i:74116280 original size:44 final size:43
Alignment explanation
Indices: 74116230--74116334 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 43
74116220 ACATATATAA
* *
74116230 ATAATAGTATTAGAAATATACAAT-ATAATATTATAAATATACAT
1 ATAATAGTATAAAAAATATA-AATAATAATATTA-AAATATACAT
* *
74116274 ATAATAGTATAAAAAATATAACTAATAATATTAAAATATATA-
1 ATAATAGTATAAAAAATATAAATAATAATATTAAAATATACAT
74116316 ATAA-A-TATAAAAAATATAA
1 ATAATAGTATAAAAAATATAA
74116335 TATTGAACAC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
40 14 0.25
41 1 0.02
42 4 0.07
43 10 0.18
44 27 0.48
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (43 bp):
ATAATAGTATAAAAAATATAAATAATAATATTAAAATATACAT
Found at i:74116557 original size:17 final size:16
Alignment explanation
Indices: 74116531--74116562 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
74116521 CTATATATAA
74116531 ATATATATACATACAT
1 ATATATATACATACAT
74116547 ATATAATATACATACA
1 ATAT-ATATACATACA
74116563 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:74116578 original size:3 final size:3
Alignment explanation
Indices: 74116564--74116725 Score: 56
Period size: 3 Copynumber: 54.7 Consensus size: 3
74116554 ATACATACAC
* * *
74116564 TAA TAT TAA TAA TAA TAA -AA AAA CTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** *
74116610 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA -AA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
74116654 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA T-A TAAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA T-AA
* *
74116699 TAA -AA TAA TAG TAA -AA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
74116726 TGTAAAAAAA
Statistics
Matches: 116, Mismatches: 25, Indels: 36
0.66 0.14 0.20
Matches are distributed among these distances:
2 18 0.16
3 85 0.73
4 12 0.10
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:74116635 original size:19 final size:20
Alignment explanation
Indices: 74116608--74116651 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
74116598 AATAATTAGT
74116608 AATAA-TAATACGTT-AGAA
1 AATAATTAATACGTTAAGAA
* *
74116626 AATAATTAATATGTTAATAA
1 AATAATTAATACGTTAAGAA
74116646 AATAAT
1 AATAAT
74116652 AGTAATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 8 0.36
20 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (20 bp):
AATAATTAATACGTTAAGAA
Found at i:74121742 original size:16 final size:17
Alignment explanation
Indices: 74121721--74121760 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
74121711 TTTCATGTGT
74121721 TATAAATT-ACATAATA
1 TATAAATTAACATAATA
74121737 TATAAAATTAACATAATA
1 TAT-AAATTAACATAATA
74121755 TA-AAAT
1 TATAAAT
74121761 ATTATAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (17 bp):
TATAAATTAACATAATA
Found at i:74124379 original size:5 final size:6
Alignment explanation
Indices: 74124364--74124389 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74124354 GATATTATCA
74124364 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
74124390 TCGGGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:74133235 original size:19 final size:18
Alignment explanation
Indices: 74133191--74133245 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 18
74133181 CAAATACATT
*
74133191 TAAAAACATAAAAATAAA
1 TAAAAAAATAAAAATAAA
**
74133209 TATTAAAATAAGAAATAAA
1 TAAAAAAATAA-AAATAAA
*
74133228 TAAAAAAATAAAACTAAA
1 TAAAAAAATAAAAATAAA
74133246 ATAATTCTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (18 bp):
TAAAAAAATAAAAATAAA
Found at i:74133331 original size:30 final size:32
Alignment explanation
Indices: 74133267--74133331 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
74133257 AACAATACAC
* *
74133267 AAATTGAAAATATAATAAAAGTGATTATATTA
1 AAATTGAAAATATAATAAAAGTAAATATATTA
74133299 AAATTGAAAATA-AA-AAAA-TAAATATGATTA
1 AAATTGAAAATATAATAAAAGTAAATAT-ATTA
74133329 AAA
1 AAA
74133332 AATTTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 5 0.17
30 11 0.37
31 2 0.07
32 12 0.40
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (32 bp):
AAATTGAAAATATAATAAAAGTAAATATATTA
Found at i:74140120 original size:27 final size:25
Alignment explanation
Indices: 74140087--74140164 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 25
74140077 TGTAATAATG
74140087 ATATATACACAATATGGTATTAAGAA
1 ATATATACACAATATGGTATTAA-AA
* *
74140113 TATATATATACAATATAGTATTTAAAA
1 -ATATATACACAATATGGTA-TTAAAA
* *
74140140 ATATATACATAAGATGGTA-TAAAA
1 ATATATACACAATATGGTATTAAAA
74140164 A
1 A
74140165 CATGTACATG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
26 15 0.34
27 19 0.43
28 4 0.09
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (25 bp):
ATATATACACAATATGGTATTAAAA
Found at i:74140413 original size:20 final size:20
Alignment explanation
Indices: 74140325--74140436 Score: 93
Period size: 21 Copynumber: 5.3 Consensus size: 20
74140315 ATATATACAT
*
74140325 ATATAAATAATAGTATTAGAA
1 ATATAAATAATAATATTA-AA
74140346 ATATACAAT-ATAATATTATAA
1 ATATA-AATAATAATATTA-AA
**
74140367 ATATACATATAATAGTATAAAAAA
1 ATATA-A-ATAATA--ATATTAAA
*
74140391 ATATAACTAATAATATTAAA
1 ATATAAATAATAATATTAAA
*
74140411 ATATATAATAAT-ATATAAAA
1 ATATA-AATAATAATATTAAA
74140431 ATATAA
1 ATATAA
74140437 TATTGAACAC
Statistics
Matches: 76, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
19 1 0.01
20 23 0.30
21 27 0.36
22 10 0.13
23 4 0.05
24 7 0.09
25 4 0.05
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
ATATAAATAATAATATTAAA
Found at i:74140423 original size:10 final size:10
Alignment explanation
Indices: 74140353--74140438 Score: 65
Period size: 10 Copynumber: 8.8 Consensus size: 10
74140343 GAAATATACA
*
74140353 ATATAATATT
1 ATATAATAAT
*
74140363 ATA-AATATAC
1 ATATAATA-AT
*
74140373 ATATAATAGT
1 ATATAATAAT
* *
74140383 ATAAAAAAAT
1 ATATAATAAT
74140393 ATAACTAATAAT
1 AT-A-TAATAAT
74140405 AT-TAA-AAT
1 ATATAATAAT
74140413 ATATAATAAT
1 ATATAATAAT
74140423 ATATAA-AA-
1 ATATAATAAT
74140431 ATATAATA
1 ATATAATA
74140439 TTGAACACAT
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
8 11 0.18
9 13 0.22
10 24 0.40
11 5 0.08
12 7 0.12
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (10 bp):
ATATAATAAT
Found at i:74140431 original size:40 final size:43
Alignment explanation
Indices: 74140318--74140436 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 43
74140308 TACACACATA
* *
74140318 TATACATATATAAATAATAGTATTAGAAATAT-ACAATATAATAT
1 TATAAATATAT-AATAATAGTA-TAAAAATATAACAATATAATAT
* *
74140362 TATAAATATACATATAATAGTATAAAAAAATATAACTA-ATAATAT
1 TATAAATATATA-ATAATAGTAT--AAAAATATAACAATATAATAT
74140407 TA-AAATATATAATAATA-TATAAAAATATAA
1 TATAAATATATAATAATAGTATAAAAATATAA
74140437 TATTGAACAC
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
40 10 0.15
42 3 0.05
43 8 0.12
44 26 0.39
45 16 0.24
46 3 0.05
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (43 bp):
TATAAATATATAATAATAGTATAAAAATATAACAATATAATAT
Found at i:74140660 original size:17 final size:16
Alignment explanation
Indices: 74140634--74140665 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
74140624 CTATATATAA
74140634 ATATATATACATACAT
1 ATATATATACATACAT
74140650 ATATAATATACATACA
1 ATAT-ATATACATACA
74140666 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:74140681 original size:3 final size:3
Alignment explanation
Indices: 74140667--74140829 Score: 65
Period size: 3 Copynumber: 54.7 Consensus size: 3
74140657 ATACATACAC
* *
74140667 TAA TAT TAA TAA TAA TAA -AA -AA CTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
74140712 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
74140757 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA T-A TAAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA T-AA
* *
74140802 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
74140830 TGTAAAAAAA
Statistics
Matches: 118, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 16 0.14
3 89 0.75
4 12 0.10
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:74145866 original size:16 final size:17
Alignment explanation
Indices: 74145845--74145884 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
74145835 TTTCATGTGT
74145845 TATAAATT-ACATAATA
1 TATAAATTAACATAATA
74145861 TATAAAATTAACATAATA
1 TAT-AAATTAACATAATA
74145879 TA-AAAT
1 TATAAAT
74145885 ATTATAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (17 bp):
TATAAATTAACATAATA
Found at i:74148302 original size:30 final size:30
Alignment explanation
Indices: 74148268--74148325 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74148258 CAATTTAGTA
74148268 ACTTAAATAAAAACATTAAAATAATTAATG
1 ACTTAAATAAAAACATTAAAATAATTAATG
* * **
74148298 ACTTAAATTAAAACTTTCGAATAATTAA
1 ACTTAAATAAAAACATTAAAATAATTAA
74148326 GTGATTATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (30 bp):
ACTTAAATAAAAACATTAAAATAATTAATG
Found at i:74148544 original size:5 final size:6
Alignment explanation
Indices: 74148529--74148554 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74148519 GATATTATCA
74148529 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
74148555 TCGGGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:74157419 original size:19 final size:18
Alignment explanation
Indices: 74157375--74157429 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 18
74157365 TAAATACATT
*
74157375 TAAAAACATAAAAATAAA
1 TAAAAAAATAAAAATAAA
**
74157393 TATTAAAATAAGAAATAAA
1 TAAAAAAATAA-AAATAAA
*
74157412 TAAAAAAATAAAACTAAA
1 TAAAAAAATAAAAATAAA
74157430 ATAATTCTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (18 bp):
TAAAAAAATAAAAATAAA
Found at i:74157515 original size:30 final size:32
Alignment explanation
Indices: 74157451--74157515 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
74157441 AACAATACAC
* *
74157451 AAATTGAAAATATAATAAAAGTGATTATATTA
1 AAATTGAAAATATAATAAAAGTAAATATATTA
74157483 AAATTGAAAATA-AA-AAAA-TAAATATGATTA
1 AAATTGAAAATATAATAAAAGTAAATAT-ATTA
74157513 AAA
1 AAA
74157516 AAATTTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 5 0.17
30 11 0.37
31 2 0.07
32 12 0.40
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (32 bp):
AAATTGAAAATATAATAAAAGTAAATATATTA
Found at i:74164346 original size:27 final size:25
Alignment explanation
Indices: 74164313--74164390 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 25
74164303 TGTAATAATG
74164313 ATATATACACAATATGGTATTAAGAA
1 ATATATACACAATATGGTATTAA-AA
* *
74164339 TATATATATACAATATAGTATTTAAAA
1 -ATATATACACAATATGGTA-TTAAAA
* *
74164366 ATATATACATAAGATGGTA-TAAAA
1 ATATATACACAATATGGTATTAAAA
74164390 A
1 A
74164391 CATGTACATG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
26 15 0.34
27 19 0.43
28 4 0.09
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (25 bp):
ATATATACACAATATGGTATTAAAA
Found at i:74164577 original size:21 final size:22
Alignment explanation
Indices: 74164552--74164663 Score: 99
Period size: 21 Copynumber: 5.2 Consensus size: 22
74164542 ATATATACAT
* *
74164552 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTAAAA
*
74164573 ATATACAAT-ATAATATTATAA
1 ATATACAATAATAATATTAAAA
* *
74164594 ATATACATATAATAGTATAAAAAA
1 ATATACA-ATAATAATAT-TAAAA
*
74164618 ATATA-ACTAATAATATT-AAA
1 ATATACAATAATAATATTAAAA
* *
74164638 ATATATAATAAT-ATATAAAAA
1 ATATACAATAATAATATTAAAA
74164659 ATATA
1 ATATA
74164664 ATATTGAACA
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
20 12 0.16
21 35 0.47
22 13 0.17
23 7 0.09
24 8 0.11
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (22 bp):
ATATACAATAATAATATTAAAA
Found at i:74164656 original size:42 final size:44
Alignment explanation
Indices: 74164558--74164664 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
74164548 ACATATATAA
* * *
74164558 ATAATAGTATTAGAAATAT-ACAATATAATATTATAAATATACAT
1 ATAATAGTATAAAAAATATAACTA-ATAATATTATAAATATACAT
*
74164602 ATAATAGTATAAAAAAATATAACTAATAATATTA-AAATATATA-
1 ATAATAGTAT-AAAAAATATAACTAATAATATTATAAATATACAT
74164645 ATAATA-TATAAAAAATATAA
1 ATAATAGTATAAAAAATATAA
74164665 TATTGAACAC
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
41 11 0.19
42 3 0.05
43 6 0.11
44 18 0.32
45 16 0.28
46 3 0.05
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (44 bp):
ATAATAGTATAAAAAATATAACTAATAATATTATAAATATACAT
Found at i:74164888 original size:17 final size:16
Alignment explanation
Indices: 74164862--74164893 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
74164852 CTATATATAA
74164862 ATATATATACATACAT
1 ATATATATACATACAT
74164878 ATATAATATACATACA
1 ATAT-ATATACATACA
74164894 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:74164909 original size:3 final size:3
Alignment explanation
Indices: 74164895--74165058 Score: 65
Period size: 3 Copynumber: 54.7 Consensus size: 3
74164885 ATACATACAC
* * *
74164895 TAA TAT TAA TAA TAA TAA -AA AAA CTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
74164941 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
74164986 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA T-A TAAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA T-AA
* *
74165031 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
74165059 TGTAAAAAAA
Statistics
Matches: 118, Mismatches: 27, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 14 0.12
3 91 0.77
4 12 0.10
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:74167766 original size:44 final size:44
Alignment explanation
Indices: 74167716--74167839 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 44
74167706 TTAGTCTGCT
74167716 CCACTGCAACTTCAAGGAGATAGGTTT-CATAACTTCAACCTACC
1 CCACTGCAACTTCAAGGAGATAGGTTTGC-TAACTTCAACCTACC
* * * * * * *
74167760 CCACTGCAACTTTAGGGGGATAAGGTTTGCTATCTTCGATCTACT
1 CCACTGCAACTTCAAGGAGAT-AGGTTTGCTAACTTCAACCTACC
*
74167805 CCACTGCAACTTCAAGGAGATAAGATTTG-TAACTT
1 CCACTGCAACTTCAAGGAGAT-AGGTTTGCTAACTT
74167840 TAATATGCTC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
44 23 0.35
45 42 0.64
46 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
CCACTGCAACTTCAAGGAGATAGGTTTGCTAACTTCAACCTACC
Found at i:74167810 original size:45 final size:45
Alignment explanation
Indices: 74167663--74167877 Score: 159
Period size: 44 Copynumber: 4.8 Consensus size: 45
74167653 TTGTAGATTT
* * * * * *
74167663 AATCTATTTCACTGAAACTTTAGGGAAATAAGATTTGCTATCTTT
1 AATCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGCTATCTTC
* * * * *
74167708 AGTCTGCTCCACTGCAACTTCAAGGAGAT-AGGTTT-CATAACTTC
1 AATCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGC-TATCTTC
* * *
74167752 AACCTACCCCACTGCAACTTTAGGGGGATAAGGTTTGCTATCTTC
1 AATCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGCTATCTTC
* * * * * *
74167797 GATCTACTCCACTGCAACTTCAAGGAGATAAGATTTG-TAACTTT
1 AATCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGCTATCTTC
* * * * *
74167841 AATATGCT-CATCTACAACTCTAGGGAGATAAGATTTG
1 AATCTACTCCA-CTGCAACTTTAGGGAGATAAGGTTTG
74167878 TGGTTTCAGT
Statistics
Matches: 131, Mismatches: 35, Indels: 9
0.75 0.20 0.05
Matches are distributed among these distances:
43 3 0.02
44 64 0.49
45 63 0.48
46 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (45 bp):
AATCTACTCCACTGCAACTTTAGGGAGATAAGGTTTGCTATCTTC
Found at i:74167859 original size:89 final size:88
Alignment explanation
Indices: 74167678--74167920 Score: 226
Period size: 89 Copynumber: 2.7 Consensus size: 88
74167668 ATTTCACTGA
* * * *
74167678 AACTTTAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAAGGAGATAGGTTT
1 AACTTTAGGGAGATAAGATTTGCTATCTTGAGTCTACTCCACTGCAACTTCAAGGAGATAGATTT
*
74167743 CATAACTTCAACCTACCCCACTGC
66 CATAACTTCAA-CTACCCCACTAC
* *
74167767 AACTTTAGGGGGATAAGGTTTGCTATCTTCGA-TCTACTCCACTGCAACTTCAAGGAGATAAGAT
1 AACTTTAGGGAGATAAGATTTGCTATCTT-GAGTCTACTCCACTGCAACTTCAAGGAGAT-AGAT
* * * *
74167831 TT-GTAACTTTAA-TATGCTCATCTAC
64 TTCATAACTTCAACTA-CCCCA-CTAC
* * * ** * *
74167856 AACTCTAGGGAGATAAGATTTG-TGGT-TTCAGTCCGCTCCACTACAACTTCAGGGAGATAGGAT
1 AACTTTAGGGAGATAAGATTTGCT-ATCTTGAGTCTACTCCACTGCAACTTCAAGGAGATA-GAT
74167919 TT
64 TT
74167921 GTTTTAGTGA
Statistics
Matches: 127, Mismatches: 20, Indels: 15
0.78 0.12 0.09
Matches are distributed among these distances:
87 4 0.03
88 34 0.27
89 83 0.65
90 6 0.05
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (88 bp):
AACTTTAGGGAGATAAGATTTGCTATCTTGAGTCTACTCCACTGCAACTTCAAGGAGATAGATTT
CATAACTTCAACTACCCCACTAC
Found at i:74168331 original size:139 final size:139
Alignment explanation
Indices: 74168137--74168390 Score: 384
Period size: 139 Copynumber: 1.8 Consensus size: 139
74168127 CGACCTACTA
* * * * *
74168137 CAACTTCAGAGGTATAGGATTTGTAACTTGTAGCTTTAATATATTCTACTGCAACTTCAGGGAAC
1 CAACTTCAGAGGGATAAGATTTGTAACTTGTAGCTTTAATATATTCCACTACAACTTCAGGGAAA
* **
74168202 TAAGATTCACTATTTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTAAAATTCAATCT
66 TAAGATTCACTATCTACAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTAAAATTCAATCT
74168267 ACTTCACTG
131 ACTTCACTG
* *
74168276 CAACTTCAG-GGAGATAAGATTTGTAATTTGTAGCTTTAATCTATTCCACTACAACTTCAGGGAA
1 CAACTTCAGAGG-GATAAGATTTGTAACTTGTAGCTTTAATATATTCCACTACAACTTCAGGGAA
* *
74168340 ATAAGATTCGCTATCTACAATCTGCTCTACTGCAACTTCAGGGAGATAAGA
65 ATAAGATTCACTATCTACAATCTGCTCTACTACAACTTCAGGGAGATAAGA
74168391 CTCGTAACTT
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
138 2 0.02
139 100 0.98
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (139 bp):
CAACTTCAGAGGGATAAGATTTGTAACTTGTAGCTTTAATATATTCCACTACAACTTCAGGGAAA
TAAGATTCACTATCTACAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTAAAATTCAATCT
ACTTCACTG
Found at i:74168433 original size:44 final size:45
Alignment explanation
Indices: 74168170--74168478 Score: 144
Period size: 45 Copynumber: 6.8 Consensus size: 45
74168160 TAACTTGTAG
* * * * * * *
74168170 CTTTAATATATTCTACTGCAACTTCAGGGAACTAAGATTCACTAT
1 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCTAA
* * * * * *
74168215 TTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGA-T--TTAAA
1 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCT-AA
* * * * * *
74168258 ATTCAATCTACTTCACTGCAACTTCAGGGAGATAAGATTTG-TAATTTGTA
1 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCT-A-----A
* * * *
74168308 GCTTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTCGCTAT
1 -CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCTAA
** * * *
74168354 CTACAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTCG-TAA
1 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCTAA
* * * ** * **
74168398 CTTTAACCTACTCCACTGTAACTTCAAGGAAATAAGGTTAG-TGG
1 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCTAA
* * * *
74168442 CTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGA
1 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGA
74168479 GTTGCCATGA
Statistics
Matches: 200, Mismatches: 53, Indels: 23
0.72 0.19 0.08
Matches are distributed among these distances:
42 1 0.00
43 32 0.16
44 64 0.32
45 66 0.33
50 1 0.00
51 35 0.17
52 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (45 bp):
CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCGCTAA
Found at i:74169381 original size:10 final size:10
Alignment explanation
Indices: 74169366--74169403 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
74169356 CACCTTGACC
74169366 TCTTTTTTTT
1 TCTTTTTTTT
*
74169376 TCTTTTTTCT
1 TCTTTTTTTT
74169386 TCTTTTTGTTT
1 TCTTTTT-TTT
74169397 T-TTTTTT
1 TCTTTTTT
74169404 ATTTTTTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 1 0.04
10 21 0.84
11 3 0.12
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.87
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:74169389 original size:20 final size:20
Alignment explanation
Indices: 74169366--74169403 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74169356 CACCTTGACC
74169366 TCTTTTT-TTTTCTTTTTTCT
1 TCTTTTTGTTTT-TTTTTTCT
74169386 TCTTTTTGTTTTTTTTTT
1 TCTTTTTGTTTTTTTTTT
74169404 ATTTTTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.87
Consensus pattern (20 bp):
TCTTTTTGTTTTTTTTTTCT
Found at i:74175141 original size:176 final size:176
Alignment explanation
Indices: 74174634--74175471 Score: 1057
Period size: 176 Copynumber: 4.7 Consensus size: 176
74174624 GCTGCAACTA
* * * * *
74174634 CTCTCTTGCTATCTCAAAAAGATAAGGCTGGTGGTAAAATCTGCTTCATTGCCAATACATGGAGA
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
** * *
74174699 TAAGATTCATTATCTTCGATCTGCTCCGCTGCAACTTCAGGGCGATAAGATTTTCAATCTTCAGT
66 TAAGATTCGCTATCTTCGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATCTTCAGT
* *
74174764 CTGCTTTCTTGCTACCTTAGAAAGATAAGATTCATTCTTCAACCTG
131 CTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTG
* * * * **
74174810 CTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTTAAATCTACTCCATTGTCGAGTGTATGGA
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG-TAAAATCTGCTCCATTGCCGA-TACATGGA
* * *
74174875 GATAAGATTCGCTATCTTCGATCTCCTCCACTGCAACTTCAGGAAGATAAGATCTTCAATCTTCA
64 GATAAGATTCGCTATCTTCGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATCTTCA
* * ** * *
74174940 GTTTGCTTCCTTATTTCCTCAGAAAGATAAGACTCATTCTTTAACCTG
129 GTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTG
* * *
74174988 CTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCTGATACATAGAGA
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
* * * * * *
74175053 GAAGATTCGCCATCTTCGATCTACTCTGCTGCAACTTCAGGGAGATAAAATCTTCAATCCTCAGT
66 TAAGATTCGCTATCTTCGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATCTTCAGT
** *
74175118 CCACTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTACAACCTG
131 CTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTG
* * * * * *
74175164 CTCGCTTGTTACCTCAGAGAGATAAGGATGGTGGCTTAAATCTGCCCCATTACCGATACATGGAG
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG-TAAAATCTGCTCCATTGCCGATACATGGAG
* * *
74175229 ATAAGATTAGCCAT-TTGCGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTTAATCT
65 ATAAGATTCGCTATCTT-C---GATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATCT
* **
74175293 TCAGTCTGCTTTCTTGTTACCTCAGAAAGATAAGACTCGCTCTTCAACCTG
126 TCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTG
*
74175344 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTACTCCATTGCCGATACATGGAGA
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
*** * * ** * * *
74175409 TAAGATTAAATATTTTTGATCTGCTCTACTACAACTTCAGGGAGATAAGATCTCCAATTTTCA
66 TAAGATTCGCTATCTTCGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATCTTCA
74175472 CCAATGTCGC
Statistics
Matches: 563, Mismatches: 91, Indels: 16
0.84 0.14 0.02
Matches are distributed among these distances:
176 203 0.36
177 71 0.13
178 136 0.24
179 37 0.07
180 116 0.21
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (176 bp):
CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
TAAGATTCGCTATCTTCGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATCTTCAGT
CTGCTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTG
Found at i:74175403 original size:356 final size:354
Alignment explanation
Indices: 74174634--74175466 Score: 1139
Period size: 354 Copynumber: 2.3 Consensus size: 354
74174624 GCTGCAACTA
* * * *
74174634 CTCTCTTGCTATCTCAAAAAGATAAGGCTGGTGGTAAAATCTGCTTCATTGCCAATACATGGAGA
1 CTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
* * * * *
74174699 TAAGATTCATTATCTTCGATCTGCTCCGCTGCAACTTCAGGGCGATAAGATTTTCAATCTTCAGT
66 TAAGATTCAATATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGATAAGATCTTCAATCCTCAGT
** * * * *
74174764 CTGCTTTCTTGCTACCTTAGAAAGATAAGATTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
131 CCACTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTACAACCTGCTCGCTTGCTACCTCAGAG
* * ** ** * *
74174829 AGATAAGGCCGGTGGCTTAAATCTACTCCATTGTCGAGTGTATGGAGATAAGATTCGCTATCTTC
196 AGATAAGGACGGTGGCTTAAATCTACCCCATTACCGAGTACATGGAGATAAGATTAGCCATCTTC
* *
74174894 GATCTCCTCCACTGCAACTTCAGGAAGATAAGATCTTCAATCTTCAGTTTGCTTCCTTATTTCCT
261 GATCTCCTCCACTGCAACTTCAGGAAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTATTACCT
* *
74174959 CAGAAAGATAAGACTCATTCTTTAACCTG
326 CAGAAAGATAAGACTCACTCTTCAACCTG
* *
74174988 CTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCTGATACATAGAGA
1 CTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
* *** * *
74175053 GAAGATTCGCCATCTTCGATCTACTCTGCTGCAACTTCAGGGAGATAAAATCTTCAATCCTCAGT
66 TAAGATTCAATATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGATAAGATCTTCAATCCTCAGT
*
74175118 CCACTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTACAACCTGCTCGCTTGTTACCTCAGAG
131 CCACTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTACAACCTGCTCGCTTGCTACCTCAGAG
* *
74175183 AGATAAGGATGGTGGCTTAAATCTGCCCCATTACCGA-TACATGGAGATAAGATTAGCCAT-TTG
196 AGATAAGGACGGTGGCTTAAATCTACCCCATTACCGAGTACATGGAGATAAGATTAGCCATCTT-
* * * * * *
74175246 CGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTTAATCTTCAGTCTGCTTTCTTGTT
260 C---GATCTCCTCCACTGCAACTTCAGGAAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTATT
*
74175311 ACCTCAGAAAGATAAGACTCGCTCTTCAACCTG
322 ACCTCAGAAAGATAAGACTCACTCTTCAACCTG
* *
74175344 CTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTACTCCATTGCCGATACATGGAGA
1 CTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
* * * * * *
74175409 TAAGATTAAATATTTTTGATCTGCTCTACTACAACTTCAGGGAGATAAGATCTCCAAT
66 TAAGATTCAATATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGATAAGATCTTCAAT
74175467 TTTCACCAAT
Statistics
Matches: 415, Mismatches: 60, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
352 2 0.00
353 20 0.05
354 203 0.49
356 190 0.46
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (354 bp):
CTCTCTTGCTATCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGA
TAAGATTCAATATCTTCGATCTGCTCTGCTGCAACTTCAGGGAGATAAGATCTTCAATCCTCAGT
CCACTTTCTTGCTACCTCAGAAAGATAAGACTCATTCTACAACCTGCTCGCTTGCTACCTCAGAG
AGATAAGGACGGTGGCTTAAATCTACCCCATTACCGAGTACATGGAGATAAGATTAGCCATCTTC
GATCTCCTCCACTGCAACTTCAGGAAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTATTACCT
CAGAAAGATAAGACTCACTCTTCAACCTG
Found at i:74176764 original size:51 final size:51
Alignment explanation
Indices: 74176634--74176783 Score: 210
Period size: 53 Copynumber: 2.9 Consensus size: 51
74176624 TCTCTCTCTC
* *
74176634 TTTTTTATTAAGTCTCAAAGTGCCCTTTGTGGGTTTTCACTTTGGCCCTTT
1 TTTTTTATTAAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTT
* *
74176685 TCATTTTTATTTAGTCTCAAAGCGCCCTTTGCGAGTTTTCACTTTGGCCCTTT
1 T--TTTTTATTAAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTT
** * *
74176738 TTTTTTAGAAAGTCTCAAAACGCCCTTTGCGGGTTTTCACATTGGC
1 TTTTTTATTAAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGC
74176784 TTCCTTCCTT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 40 0.46
53 47 0.54
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (51 bp):
TTTTTTATTAAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTT
Found at i:74185114 original size:40 final size:37
Alignment explanation
Indices: 74185013--74185178 Score: 164
Period size: 35 Copynumber: 4.6 Consensus size: 37
74185003 CATGGCAAAG
74185013 TGTGAAATGTAGGTATGG--TATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
* *
74185048 TGTGAAATATAGGTATGGTAT-T-ATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
*
74185083 TGTGAAATGTAGGTATGGTATTATCAAATCCATTCTGAGT
1 TGTGAAATGTAGGTATGGTA-TATC--ATCCATACTGAGT
** * * * *
74185123 TAAGAAATGTAAGTATGGCATTTC--CCATACCGAGT
1 TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
**
74185158 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
74185179 TTCAATGAGG
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
35 74 0.69
36 2 0.02
37 2 0.02
39 3 0.03
40 27 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATATCATCCATACTGAGT
Found at i:74185139 original size:75 final size:75
Alignment explanation
Indices: 74185013--74185183 Score: 194
Period size: 75 Copynumber: 2.4 Consensus size: 75
74185003 CATGGCAAAG
** * *
74185013 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATATAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATATAAGTATGGCATT-TC
*
74185072 CCATACTGAGC
65 CCATACCGAGC
* *
74185083 TGTGAAATGTAGGTATGGTATTATCAAATCCATTCTGAGTTAAGAAATGTAAGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATATAAGTATGGCATTTCC
*
74185148 CATACCGAGT
66 CATACCGAGC
**
74185158 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
74185184 TGAGGAAAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 58 0.68
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATATAAGTATGGCATTTCC
CATACCGAGC
Found at i:74186630 original size:19 final size:19
Alignment explanation
Indices: 74186606--74186645 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
74186596 TATAGCCTTT
*
74186606 AATGCATATG-ATGTAATGC
1 AATGCAAATGCATG-AATGC
74186625 AATGCAAATGCATGAATGC
1 AATGCAAATGCATGAATGC
74186644 AA
1 AA
74186646 AGGAGGCGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAAATGCATGAATGC
Found at i:74188547 original size:16 final size:16
Alignment explanation
Indices: 74188526--74188558 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74188516 ACTGTTCCAA
74188526 TCTTTGGTCCATTTCT
1 TCTTTGGTCCATTTCT
74188542 TCTTTGGTCCATTTCT
1 TCTTTGGTCCATTTCT
74188558 T
1 T
74188559 TGGTTTTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.24, G:0.12, T:0.58
Consensus pattern (16 bp):
TCTTTGGTCCATTTCT
Found at i:74188557 original size:13 final size:15
Alignment explanation
Indices: 74188526--74188562 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
74188516 ACTGTTCCAA
74188526 TCTTTGGTCCATTTCT
1 TCTTTGGTCCA-TTCT
74188542 TCTTTGGTCCA-T-T
1 TCTTTGGTCCATTCT
74188555 TCTTTGGT
1 TCTTTGGT
74188563 TTTGGCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.43
14 1 0.05
16 11 0.52
ACGTcount: A:0.05, C:0.22, G:0.16, T:0.57
Consensus pattern (15 bp):
TCTTTGGTCCATTCT
Found at i:74191088 original size:33 final size:33
Alignment explanation
Indices: 74191028--74191174 Score: 109
Period size: 33 Copynumber: 4.5 Consensus size: 33
74191018 ATGGATGTAA
* * * *
74191028 CCTTTTCCAGTCGTATACTCGAGGTGTAAAT-T
1 CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
* *
74191060 CCCTTTTCAAGTGGTACACTCAAAGTGTACATAT
1 -CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
* * ** *
74191094 CCTTTTCAAGTTGTACACACAAAGTGTACTTAG
1 CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
* * * * * *
74191127 CCTTTTCAAATTGTATACACAAAGTGTACATAA
1 CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
*
74191160 CCTTGTCAAGT-GTAC
1 CCTTTTCAAGTCGTAC
74191175 CATTTAAGTA
Statistics
Matches: 96, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
32 3 0.03
33 92 0.96
34 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTCGTACACTCAAAGTGTAAATAT
Found at i:74198634 original size:33 final size:33
Alignment explanation
Indices: 74198586--74198717 Score: 113
Period size: 33 Copynumber: 4.0 Consensus size: 33
74198576 TTTTCCAATC
* *
74198586 GTACACTCGAGGTGTAAAT-TCCCTTTTCAAGTG
1 GTACACTCAAAGTGTAAATAT-CCTTTTCAAGTG
* *
74198619 GTACACTCAAAGTGTACATATCCTTTTCAAGTT
1 GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
* ** * * *
74198652 GTACACACAAAGTGTACTTAGCCTTTTCAAATT
1 GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
* * * * *
74198685 GTATACACAAAGTGTACATAACCTTGTCAAGTG
1 GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
74198718 TACCATTTAA
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
33 83 0.99
34 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (33 bp):
GTACACTCAAAGTGTAAATATCCTTTTCAAGTG
Found at i:74198667 original size:66 final size:65
Alignment explanation
Indices: 74198597--74198720 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 65
74198587 TACACTCGAG
* * * *
74198597 GTGTAAATT-CCCTTTTCAAGTGGTACACTCAAAGTGTACATATCCTTTTCAAGTTGTACACACA
1 GTGT-AATTACCCTTTTCAAATGGTACACACAAAGTGTACATAACCTTGTCAAG-TGTACACACA
74198661 AA
64 AA
* * * *
74198663 GTGTACTTAGCCTTTTCAAATTGTATACACAAAGTGTACATAACCTTGTCAAGTGTAC
1 GTGTAATTACCCTTTTCAAATGGTACACACAAAGTGTACATAACCTTGTCAAGTGTAC
74198721 CATTTAAGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
65 8 0.16
66 41 0.84
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (65 bp):
GTGTAATTACCCTTTTCAAATGGTACACACAAAGTGTACATAACCTTGTCAAGTGTACACACAAA
Found at i:74200411 original size:11 final size:10
Alignment explanation
Indices: 74200395--74200469 Score: 55
Period size: 12 Copynumber: 7.1 Consensus size: 10
74200385 TAATGAGGAC
74200395 AAAAATAAAAT
1 AAAAAT-AAAT
74200406 AAAAATAAAT
1 AAAAATAAAT
74200416 -AAAAT-AAT
1 AAAAATAAAT
**
74200424 AAAAAGGAAT
1 AAAAATAAAT
*
74200434 AATGAATGAAAT
1 AA-AAAT-AAAT
74200446 AACAAATGAAAT
1 AA-AAAT-AAAT
74200458 AATAAATAAAT
1 AA-AAATAAAT
74200469 A
1 A
74200470 CAAGTAAAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
8 3 0.06
9 9 0.17
10 9 0.17
11 13 0.25
12 19 0.36
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.20
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:74200552 original size:3 final size:3
Alignment explanation
Indices: 74200544--74200590 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
74200534 TAAAATGGTT
74200544 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
74200591 TGAAATAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:74200637 original size:19 final size:19
Alignment explanation
Indices: 74200614--74200666 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
74200604 CAAATGCCCG
* *
74200614 AAAAAAAACAAAATAAAAAT
1 AAAAAAAA-TAAACAAAAAT
74200634 AAAAAAAATAAACAAAAAT
1 AAAAAAAATAAACAAAAAT
74200653 AAAGAAATAATAAA
1 AAA-AAA-AATAAA
74200667 TAAGCAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 12 0.41
20 11 0.38
21 6 0.21
ACGTcount: A:0.83, C:0.04, G:0.02, T:0.11
Consensus pattern (19 bp):
AAAAAAAATAAACAAAAAT
Found at i:74200641 original size:10 final size:10
Alignment explanation
Indices: 74200614--74200666 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
74200604 CAAATGCCCG
*
74200614 AAAAAAAACA
1 AAAAAAAATA
74200624 AAATAAAAAT-
1 AAA-AAAAATA
74200634 AAAAAAAATA
1 AAAAAAAATA
*
74200644 AACAAAAATA
1 AAAAAAAATA
*
74200654 AAGAAATAATA
1 AA-AAAAAATA
74200665 AA
1 AA
74200667 TAAGCAACTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 6 0.17
10 17 0.47
11 13 0.36
ACGTcount: A:0.83, C:0.04, G:0.02, T:0.11
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:74200641 original size:15 final size:15
Alignment explanation
Indices: 74200614--74200669 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
74200604 CAAATGCCCG
*
74200614 AAAAA-AAACAAAAT
1 AAAAATAAAAAAAAT
74200628 AAAAATAAAAAAAAT
1 AAAAATAAAAAAAAT
*
74200643 AAACAAAAATAAAGAAAT
1 AAA-AATAA-AAA-AAAT
74200661 AATAAATAA
1 AA-AAATAA
74200670 GCAACTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 5 0.15
15 11 0.32
16 4 0.12
17 3 0.09
18 10 0.29
19 1 0.03
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAAATAAAAAAAAT
Found at i:74207560 original size:137 final size:137
Alignment explanation
Indices: 74207398--74207969 Score: 968
Period size: 137 Copynumber: 4.1 Consensus size: 137
74207388 CGGCCAAGAT
*
74207398 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGACC
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
74207463 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
74207528 GAATGTG
131 GAATGTG
74207535 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
*
74207600 AAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
74207665 GAATGTG
131 GAATGTG
74207672 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
74207737 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
74207802 GAATGTG
131 GAATGTG
74207809 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G----TATGTGAT
* * * * * * *
74207874 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAA
60 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
* *
74207937 CGTGATGGATGTG
125 TGTGATGAATGTG
*
74207950 AAAGTGTATAAATGTGATAA
1 AAAGTGTATATATGTGATAA
74207970 ATCCCGAAGG
Statistics
Matches: 416, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
137 321 0.77
139 1 0.00
141 53 0.13
143 41 0.10
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (137 bp):
AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTG
Found at i:74207568 original size:47 final size:47
Alignment explanation
Indices: 74207398--74207969 Score: 793
Period size: 47 Copynumber: 12.4 Consensus size: 47
74207388 CGGCCAAGAT
*
74207398 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * *
74207445 AAA--G----TATGTGATAAGACCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
74207486 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
74207535 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
74207582 AAA--G----TATGTGATAAGGCCAAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
74207623 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
74207672 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
74207719 AAA--G----TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
74207760 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
74207809 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
74207856 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * * * * *
74207903 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
74207950 AAAGTGTATAAATGTGATAA
1 AAAGTGTATATATGTGATAA
74207970 ATCCCGAAGG
Statistics
Matches: 470, Mismatches: 31, Indels: 48
0.86 0.06 0.09
Matches are distributed among these distances:
41 110 0.23
43 3 0.01
45 3 0.01
47 232 0.49
49 122 0.26
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:74217097 original size:18 final size:18
Alignment explanation
Indices: 74217071--74217106 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74217061 ATATAAAATA
*
74217071 TAAAAATTAAAAATATTT
1 TAAAAATTAAAAAAATTT
*
74217089 TAAACATTAAAAAAATTT
1 TAAAAATTAAAAAAATTT
74217107 AACCGTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAAATTAAAAAAATTT
Found at i:74217429 original size:11 final size:12
Alignment explanation
Indices: 74217405--74217429 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74217395 AATTTTAGAA
74217405 TTTAAAATTTTT
1 TTTAAAATTTTT
74217417 TTTAAAATTTTT
1 TTTAAAATTTTT
74217429 T
1 T
74217430 AAGAATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTAAAATTTTT
Found at i:74217680 original size:45 final size:45
Alignment explanation
Indices: 74217629--74217716 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
74217619 TTTTGCTACA
74217629 CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGACT
1 CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGACT
*
74217674 CATGAGAACTCTGCCACCTTGTTACCTTTTTGTAGTACTAGGA
1 CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGA
74217717 TTGTTCCACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (45 bp):
CATGAGAACTCTGCCACCTTGTTACCTTTTCGTAGTACTAGGACT
Found at i:74223211 original size:24 final size:24
Alignment explanation
Indices: 74223182--74223239 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
74223172 AGACCCACTC
* *
74223182 ATATATTTTTAAATTTTTTTAAAT
1 ATATATATTTAAATTATTTTAAAT
*
74223206 ATATATATTTATATTATTTT-AAT
1 ATATATATTTAAATTATTTTAAAT
*
74223229 TTA-ATATTTAA
1 ATATATATTTAA
74223240 TAATATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 7 0.24
23 5 0.17
24 17 0.59
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
ATATATATTTAAATTATTTTAAAT
Found at i:74223513 original size:8 final size:8
Alignment explanation
Indices: 74223500--74223537 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
74223490 GCTTTAACTA
74223500 AAATTTTT
1 AAATTTTT
74223508 AAATTTTTT
1 AAA-TTTTT
74223517 AAA-TTTT
1 AAATTTTT
*
74223524 AAATTTTA
1 AAATTTTT
74223532 AAATTT
1 AAATTT
74223538 ATAATGTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
7 7 0.26
8 12 0.44
9 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AAATTTTT
Found at i:74225691 original size:34 final size:34
Alignment explanation
Indices: 74225648--74225712 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
74225638 GTAACATAAA
74225648 CTCGTGATTTTTTATAACATAAATTATTAATCAG
1 CTCGTGATTTTTTATAACATAAATTATTAATCAG
74225682 CTCGTGATTTTTTATAACATAAATTATTAAT
1 CTCGTGATTTTTTATAACATAAATTATTAAT
74225713 TAAAATATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (34 bp):
CTCGTGATTTTTTATAACATAAATTATTAATCAG
Found at i:74238067 original size:161 final size:156
Alignment explanation
Indices: 74237806--74238119 Score: 403
Period size: 161 Copynumber: 2.0 Consensus size: 156
74237796 TATACTATCC
* *
74237806 TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAATTGAGGGAAAAATCACAACCCCAAATTAGAT
1 TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAACTGAGGAAAAAATCACAACCCCAAATTAGAT
* *
74237871 TTAAATATTTTGAAACCTGTCAGTAAAAAAGTGTTTACAATATACATGTGATCCAGTTGTATTAG
66 TTAAATATTTTGAAACCTGACAATAAAAAAGTGTTTA-AATATACATGTGATCCAGTTGTATTAG
** *
74237936 GTTGAATTCATGGTCTTCTATTGTTCT
130 GTTGAAGGCATGATCTTCTATTGTTCT
* * * * *
74237963 TTTTTTGGCTTCTAGTTCTTGTACTTGTGCCAGACTGAGACAATAAAAAATCATAACCCCAAATT
1 TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAACTGAG----GAAAAAATCACAACCCCAAATT
* * * * * * *
74238028 AGATTTAAATATTTTGGAACTTGACAATGAAAAAGTGTTTATATATACCTGTTATCCAGTTGTGT
62 AGATTTAAATATTTTGAAACCTGACAATAAAAAAGTGTTTAAATATACATGTGATCCAGTTGTAT
*
74238093 TAGGTTGAAGGCATGATCTTCTGTTGT
127 TAGGTTGAAGGCATGATCTTCTATTGT
74238120 GACCCTCACC
Statistics
Matches: 133, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 35 0.26
160 43 0.32
161 55 0.41
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (156 bp):
TTTTTTGGCTTCTAGTTCTTGTACTCGTACCAAACTGAGGAAAAAATCACAACCCCAAATTAGAT
TTAAATATTTTGAAACCTGACAATAAAAAAGTGTTTAAATATACATGTGATCCAGTTGTATTAGG
TTGAAGGCATGATCTTCTATTGTTCT
Found at i:74240393 original size:18 final size:18
Alignment explanation
Indices: 74240370--74240412 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
74240360 AACAATCTAA
74240370 ACCTTCAACACCCTCACC
1 ACCTTCAACACCCTCACC
* *
74240388 ACCTTCACCACCCTTACC
1 ACCTTCAACACCCTCACC
74240406 ACCTTCA
1 ACCTTCA
74240413 TTGCCAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (18 bp):
ACCTTCAACACCCTCACC
Found at i:74240476 original size:57 final size:57
Alignment explanation
Indices: 74240388--74240527 Score: 181
Period size: 57 Copynumber: 2.5 Consensus size: 57
74240378 CACCCTCACC
* * * *
74240388 ACCTTCACCACCCTTACCACCTTCATTGCCAGTAATATCAACACCCTCCCCACCTAA
1 ACCTTCAACACCCTTACCACCTTCACTGCCAGCAACATCAACACCCTCCCCACCTAA
* * * * * **
74240445 ACCTTCAACACCCTCACCACCTTTACTGCCAGCAACATCAGCACCCTCTCTATTTAA
1 ACCTTCAACACCCTTACCACCTTCACTGCCAGCAACATCAACACCCTCCCCACCTAA
74240502 ACCTTCAACACCCTTACCACCTTCAC
1 ACCTTCAACACCCTTACCACCTTCAC
74240528 CACCCTTAAC
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 70 1.00
ACGTcount: A:0.28, C:0.45, G:0.04, T:0.24
Consensus pattern (57 bp):
ACCTTCAACACCCTTACCACCTTCACTGCCAGCAACATCAACACCCTCCCCACCTAA
Found at i:74240525 original size:18 final size:18
Alignment explanation
Indices: 74240502--74240557 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
74240492 CTCTATTTAA
*
74240502 ACCTTCAACACCCTTACC
1 ACCTTCACCACCCTTACC
74240520 ACCTTCACCACCCTTA--
1 ACCTTCACCACCCTTACC
*
74240536 ACC-TCACCACCCTCACC
1 ACCTTCACCACCCTTACC
74240553 ACCTT
1 ACCTT
74240558 TACTGCTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 11 0.33
16 3 0.09
17 3 0.09
18 16 0.48
ACGTcount: A:0.25, C:0.54, G:0.00, T:0.21
Consensus pattern (18 bp):
ACCTTCACCACCCTTACC
Found at i:74240547 original size:57 final size:57
Alignment explanation
Indices: 74240388--74240549 Score: 135
Period size: 57 Copynumber: 2.8 Consensus size: 57
74240378 CACCCTCACC
* * *** * * * * * **
74240388 ACCTTCACCACCCTTACCACCTTCATTGCCAGTAATATCAACACCCTCCCCACCTAA
1 ACCTTCAACACCCTCACCACCTTCACCACCAGCAACATCACCACCCTCTCTATTTAA
* ** *
74240445 ACCTTCAACACCCTCACCACCTTTACTGCCAGCAACATCAGCACCCTCTCTATTTAA
1 ACCTTCAACACCCTCACCACCTTCACCACCAGCAACATCACCACCCTCTCTATTTAA
* *** *
74240502 ACCTTCAACACCCTTACCACCTTCACCACCCTTAACCTCACCACCCTC
1 ACCTTCAACACCCTCACCACCTTCACCACCAGCAACATCACCACCCTC
74240550 ACCACCTTTA
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 85 1.00
ACGTcount: A:0.27, C:0.47, G:0.03, T:0.23
Consensus pattern (57 bp):
ACCTTCAACACCCTCACCACCTTCACCACCAGCAACATCACCACCCTCTCTATTTAA
Found at i:74240573 original size:24 final size:24
Alignment explanation
Indices: 74240546--74240627 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
74240536 ACCTCACCAC
*
74240546 CCTCACCACCTTTACTGCTAACAA
1 CCTCAACACCTTTACTGCTAACAA
* **
74240570 CCTCAACACCTTTCCCACCT-A-AA
1 CCTCAACACCTTT-ACTGCTAACAA
* * *
74240593 CCTTCACCACCTTCACTGCTAGCAA
1 CC-TCAACACCTTTACTGCTAACAA
74240618 CCTCAACACC
1 CCTCAACACC
74240628 CTCTCCATTT
Statistics
Matches: 43, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
23 7 0.16
24 29 0.67
25 7 0.16
ACGTcount: A:0.28, C:0.46, G:0.04, T:0.22
Consensus pattern (24 bp):
CCTCAACACCTTTACTGCTAACAA
Found at i:74240649 original size:24 final size:24
Alignment explanation
Indices: 74240616--74240678 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
74240606 CACTGCTAGC
74240616 AACC-TCAACACCC-TCTCCATTTA
1 AACCTTCAACACCCTTC-CCATTTA
*
74240639 AACCTTTAACACCCTTCCCATTTA
1 AACCTTCAACACCCTTCCCATTTA
74240663 AACCTTCAACACCCTT
1 AACCTTCAACACCCTT
74240679 ACCACCTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 4 0.11
24 30 0.83
25 2 0.06
ACGTcount: A:0.30, C:0.41, G:0.00, T:0.29
Consensus pattern (24 bp):
AACCTTCAACACCCTTCCCATTTA
Found at i:74241712 original size:29 final size:28
Alignment explanation
Indices: 74241592--74241712 Score: 93
Period size: 29 Copynumber: 4.2 Consensus size: 28
74241582 TAAAAAATAA
* * **
74241592 TAAACTAAAATCCCCAAAATCGAAATACTT
1 TAAACCAAAATCCCCAAATTC-AAA-ACCC
* * *
74241622 TAAACAAAAATCCCCAAAATCAGAACCCC
1 TAAACCAAAATCCCCAAATTCA-AAACCC
* *
74241651 T-AACCTAAAATCCTCAAATTCAATAA-CT
1 TAAACC-AAAATCCCCAAATTCAA-AACCC
74241679 TAAACCAAAATCCCCAAATTCAAAAGCCC
1 TAAACCAAAATCCCCAAATTCAAAA-CCC
74241708 TAAAC
1 TAAAC
74241713 ATAAATCGAA
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
27 2 0.03
28 22 0.30
29 28 0.38
30 22 0.30
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.19
Consensus pattern (28 bp):
TAAACCAAAATCCCCAAATTCAAAACCC
Found at i:74246092 original size:22 final size:23
Alignment explanation
Indices: 74246067--74246124 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
74246057 TTAAAAATAT
*
74246067 TAACTTTGTTAAATAATAAAC-G
1 TAACTTTGTTAAATAATAAACAC
**
74246089 TAACTTT-TTAAGCAATAAACAC
1 TAACTTTGTTAAATAATAAACAC
*
74246111 TAACATTGTTAAAT
1 TAACTTTGTTAAAT
74246125 TTTGGTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 11 0.39
22 13 0.46
23 4 0.14
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (23 bp):
TAACTTTGTTAAATAATAAACAC
Found at i:74248263 original size:18 final size:18
Alignment explanation
Indices: 74248242--74248369 Score: 83
Period size: 18 Copynumber: 7.4 Consensus size: 18
74248232 CTTCTCACCA
*
74248242 TCTTTCTTGGTTTCATCT
1 TCTTTCTTGGCTTCATCT
**
74248260 TCTTTCTTACCTTC-T-T
1 TCTTTCTTGGCTTCATCT
*
74248276 CCTTT-TTGGCTTCA---
1 TCTTTCTTGGCTTCATCT
*
74248290 TCTTTCGTTTG-TTCATCT
1 TCTTTC-TTGGCTTCATCT
* * *
74248308 TCCTTCTTGGGTTCACCT
1 TCTTTCTTGGCTTCATCT
*
74248326 TCTTTCTTTTG-TTCATCT
1 TCTTTC-TTGGCTTCATCT
* *
74248344 TCTTTTTTGGCTTCACCT
1 TCTTTCTTGGCTTCATCT
74248362 TCTTTCTT
1 TCTTTCTT
74248370 TGGTCCCTCT
Statistics
Matches: 83, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
14 4 0.05
15 10 0.12
16 8 0.10
17 7 0.08
18 51 0.61
19 3 0.04
ACGTcount: A:0.05, C:0.27, G:0.09, T:0.59
Consensus pattern (18 bp):
TCTTTCTTGGCTTCATCT
Found at i:74248290 original size:33 final size:31
Alignment explanation
Indices: 74248243--74248369 Score: 92
Period size: 36 Copynumber: 3.8 Consensus size: 31
74248233 TTCTCACCAT
* * *
74248243 CTTTCTTGGTTTCATCTTCTTTCTTACCTTCTTC
1 CTTT-TTGGCTTCACCTTCTTTCTT--CATCTTC
* *
74248277 CTTTTTGGCTTCATCTTTCGTTTGTTCATCTTC
1 CTTTTTGGCTTCA-CCTTC-TTTCTTCATCTTC
* *
74248310 CTTCTTGGGTTCACCTTCTTTCTTTTGTTCATCTTC
1 CTTTTTGGCTTCACCTTCTTTC-----TTCATCTTC
*
74248346 TTTTTTGGCTTCACCTTCTTTCTT
1 CTTTTTGGCTTCACCTTCTTTCTT
74248370 TGGTCCCTCT
Statistics
Matches: 74, Mismatches: 12, Indels: 17
0.72 0.12 0.17
Matches are distributed among these distances:
31 5 0.07
32 4 0.05
33 25 0.34
34 7 0.09
35 5 0.07
36 28 0.38
ACGTcount: A:0.06, C:0.27, G:0.09, T:0.58
Consensus pattern (31 bp):
CTTTTTGGCTTCACCTTCTTTCTTCATCTTC
Found at i:74248337 original size:36 final size:36
Alignment explanation
Indices: 74248272--74248370 Score: 132
Period size: 36 Copynumber: 2.8 Consensus size: 36
74248262 TTTCTTACCT
* *
74248272 TCTTCCTTTTTGGCTTCA---TCTTTCGTTTGTTCA
1 TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
*
74248305 TCTTCCTTCTTGGGTTCACCTTCTTTCTTTTGTTCA
1 TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
* *
74248341 TCTTCTTTTTTGGCTTCACCTTCTTTCTTT
1 TCTTCCTTCTTGGCTTCACCTTCTTTCTTT
74248371 GGTCCCTCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
33 16 0.28
36 41 0.72
ACGTcount: A:0.05, C:0.26, G:0.10, T:0.59
Consensus pattern (36 bp):
TCTTCCTTCTTGGCTTCACCTTCTTTCTTTTGTTCA
Found at i:74251396 original size:13 final size:13
Alignment explanation
Indices: 74251374--74251404 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
74251364 TTATATGATA
74251374 TTTA-AATAATTT
1 TTTATAATAATTT
74251386 TTTATAATAATTT
1 TTTATAATAATTT
74251399 TTTATA
1 TTTATA
74251405 TTCACATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTATAATAATTT
Found at i:74255633 original size:21 final size:20
Alignment explanation
Indices: 74255607--74255657 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
74255597 GCCCAACAGT
**
74255607 AAAAAAAAACTCTGAAAACG
1 AAAAAAAAAAGCTGAAAACG
*
74255627 AAAAAAAAAAGCTGAAAATG
1 AAAAAAAAAAGCTGAAAACG
74255647 AAAAAAAAAAG
1 AAAAAAAAAAG
74255658 GGACATGTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.73, C:0.08, G:0.12, T:0.08
Consensus pattern (20 bp):
AAAAAAAAAAGCTGAAAACG
Found at i:74256328 original size:150 final size:149
Alignment explanation
Indices: 74256162--74256488 Score: 415
Period size: 151 Copynumber: 2.2 Consensus size: 149
74256152 AATGTATTAT
* * *** *
74256162 ATATATTTAAAAAAATAATATACGAAAGTAAAAAATACAAATAAAGTGGTAAAATCAGGGTTATT
1 ATATATTTTAAAAAATAATATACGAAAGTAAAAAATACAAACAAAGTACCAAAATCAGAGTTATT
74256227 TATTAAA-AAATACAAAAAAACACTTAAATAATACATTTGAAACA-TAATGTACTAAAATAATAT
66 TATTAAATAAATA-AAAAAAACACTTAAATAATACATTTGAAACACT-ATGTACTAAAATAATAT
*
74256290 AAAGAAATAAAATATGAAAATA
129 AAA-AAATAAAATACGAAAATA
* * * * * * *
74256312 ATATATTTTAAAAAATAAAATCCAAAAATTAAAAAATACGAACAAGGTACCAAAGTCAGAGTTAT
1 ATATATTTTAAAAAATAATATAC-GAAAGTAAAAAATACAAACAAAGTACCAAAATCAGAGTTAT
* * * * * *
74256377 TTATTAAATTAATATAAAAAACACTTAAGTAATACATTTGAAACACTTTTTGCTAAAATAATATA
65 TTATTAAATAAATAAAAAAAACACTTAAATAATACATTTGAAACACTATGTACTAAAATAATATA
*
74256442 AAAAATAAAATACGTAAATA
130 AAAAATAAAATACGAAAATA
74256462 ATATATTTTAAAAAATAATATACGAAA
1 ATATATTTTAAAAAATAATATACGAAA
74256489 ATGTTATACT
Statistics
Matches: 150, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
149 3 0.02
150 57 0.38
151 85 0.57
152 5 0.03
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.28
Consensus pattern (149 bp):
ATATATTTTAAAAAATAATATACGAAAGTAAAAAATACAAACAAAGTACCAAAATCAGAGTTATT
TATTAAATAAATAAAAAAAACACTTAAATAATACATTTGAAACACTATGTACTAAAATAATATAA
AAAATAAAATACGAAAATA
Found at i:74256788 original size:20 final size:20
Alignment explanation
Indices: 74256762--74256810 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
74256752 CCACATGTCC
74256762 CTTTTTTTTTCATTTTCAG-
1 CTTTTTTTTTCATTTTCAGA
*
74256781 CTTTTTTTTTCGTTTTCAGA
1 CTTTTTTTTTCATTTTCAGA
*
74256801 GTTTTTTTTT
1 CTTTTTTTTT
74256811 ACTGTTGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.08, C:0.12, G:0.08, T:0.71
Consensus pattern (20 bp):
CTTTTTTTTTCATTTTCAGA
Found at i:74259401 original size:15 final size:15
Alignment explanation
Indices: 74259377--74259406 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74259367 GAACTGTAAC
*
74259377 TTCCTTACCACATTT
1 TTCCTCACCACATTT
74259392 TTCCTCACCACATTT
1 TTCCTCACCACATTT
74259407 CCATATTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (15 bp):
TTCCTCACCACATTT
Found at i:74261673 original size:27 final size:27
Alignment explanation
Indices: 74261617--74261673 Score: 62
Period size: 29 Copynumber: 2.1 Consensus size: 27
74261607 ATAATAGCTG
74261617 TTTTTTTCAATTTGGCACCTAAAGAATT
1 TTTTTTTCAATTTGGCACCTAAAG-ATT
* **
74261645 TTTTTTCTCAGTTTGGTTCCTAAAG-TT
1 TTTTTT-TCAATTTGGCACCTAAAGATT
74261672 TT
1 TT
74261674 GCCCTGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 4 0.16
28 6 0.24
29 15 0.60
ACGTcount: A:0.21, C:0.14, G:0.12, T:0.53
Consensus pattern (27 bp):
TTTTTTTCAATTTGGCACCTAAAGATT
Found at i:74267565 original size:18 final size:19
Alignment explanation
Indices: 74267529--74267565 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
74267519 TTATTTGTTT
*
74267529 TTAAAATTATAATAAACAC
1 TTAAAATTATAAGAAACAC
74267548 TTAAAATT-TAAGAAACAC
1 TTAAAATTATAAGAAACAC
74267566 ATCAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.30
Consensus pattern (19 bp):
TTAAAATTATAAGAAACAC
Found at i:74271691 original size:23 final size:23
Alignment explanation
Indices: 74271665--74271710 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74271655 TTCTTAGAAG
74271665 ATAGAGACATAGATGTGACTGAC
1 ATAGAGACATAGATGTGACTGAC
74271688 ATAGAGACATAGATGTGACTGAC
1 ATAGAGACATAGATGTGACTGAC
74271711 TGGAATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (23 bp):
ATAGAGACATAGATGTGACTGAC
Found at i:74282329 original size:93 final size:93
Alignment explanation
Indices: 74282221--74282392 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
74282211 GCCCATAAGT
* * *
74282221 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74282286 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
74282314 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74282379 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
74282393 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:74282388 original size:46 final size:46
Alignment explanation
Indices: 74282213--74282388 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
74282203 TGTAACCCGC
* *
74282213 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74282259 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
74282305 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74282352 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
74282389 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:74285849 original size:17 final size:16
Alignment explanation
Indices: 74285827--74285859 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
74285817 TATCAACCGA
74285827 TTCATATACAATATCAT
1 TTCATATACAA-ATCAT
74285844 TTCATATACAAATCAT
1 TTCATATACAAATCAT
74285860 GTTAATCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (16 bp):
TTCATATACAAATCAT
Done.