Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 228 of 320
Found at i:75683150 original size:19 final size:19
Alignment explanation
Indices: 75683126--75683177 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
75683116 TATAATTTTT
75683126 TATTTTTATAAAATTTATA
1 TATTTTTATAAAATTTATA
* *
75683145 TA-TTTTAT-GATTTTATA
1 TATTTTTATAAAATTTATA
75683162 TATTTTT-TAAATATTT
1 TATTTTTATAAA-ATTT
75683178 CTTAACATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
17 10 0.38
18 11 0.42
19 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TATTTTTATAAAATTTATA
Found at i:75683161 original size:17 final size:17
Alignment explanation
Indices: 75683105--75683167 Score: 76
Period size: 17 Copynumber: 3.8 Consensus size: 17
75683095 TTTTATGTAC
75683105 TTTTA-ATATTTTATAA
1 TTTTATATATTTTATAA
*
75683121 TTTTTTAT-TTTTATAAA
1 TTTTATATATTTTAT-AA
* *
75683138 ATTTATATATTTTATGA
1 TTTTATATATTTTATAA
75683155 TTTTATATATTTT
1 TTTTATATATTTT
75683168 TTAAATATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.26
17 23 0.59
18 6 0.15
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTATATATTTTATAA
Found at i:75688361 original size:31 final size:31
Alignment explanation
Indices: 75688326--75688385 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
75688316 ACTTAAGAAC
* *
75688326 CCAATGACTTGAATAAAGACTTTCAAATAAT
1 CCAATGACTTAAATAAAAACTTTCAAATAAT
75688357 CCAATGACTTAAATAAAAACTTTCAAATA
1 CCAATGACTTAAATAAAAACTTTCAAATA
75688386 GTTTAACGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (31 bp):
CCAATGACTTAAATAAAAACTTTCAAATAAT
Found at i:75690122 original size:23 final size:26
Alignment explanation
Indices: 75690096--75690142 Score: 55
Period size: 25 Copynumber: 1.9 Consensus size: 26
75690086 ATTAAAATTT
*
75690096 ATTT-ATTT-TTAATGATAA-TAACA
1 ATTTAATTTATTAATGATATATAACA
*
75690119 ATTTAATTTATTAATTATATATAA
1 ATTTAATTTATTAATGATATATAA
75690143 ATTTATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
23 4 0.21
24 4 0.21
25 8 0.42
26 3 0.16
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
ATTTAATTTATTAATGATATATAACA
Found at i:75690579 original size:15 final size:15
Alignment explanation
Indices: 75690559--75690605 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
75690549 TTGTCTCATA
75690559 TTATATTTTAGTCAC
1 TTATATTTTAGTCAC
* * *
75690574 TTATATTTAAATTA-
1 TTATATTTTAGTCAC
*
75690588 TTATATCTTAGTCAC
1 TTATATTTTAGTCAC
75690603 TTA
1 TTA
75690606 AATTATTATT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.32, C:0.11, G:0.04, T:0.53
Consensus pattern (15 bp):
TTATATTTTAGTCAC
Found at i:75693344 original size:3 final size:3
Alignment explanation
Indices: 75693338--75693368 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
75693328 ATATCAACAA
75693338 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
75693369 ATCATCAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:75695785 original size:13 final size:13
Alignment explanation
Indices: 75695767--75695791 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75695757 CCCTGAGATA
75695767 ATATATATAATAT
1 ATATATATAATAT
75695780 ATATATATAATA
1 ATATATATAATA
75695792 AGGATAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATATAATAT
Found at i:75696034 original size:27 final size:29
Alignment explanation
Indices: 75696004--75696058 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
75695994 TTTATATTAG
75696004 ATAAATAT-AATT-ATGTGTATA-CAATAT
1 ATAAATATAAATTGATGT-TATATCAATAT
75696031 ATAAATATAAATTGATGTTATATCAATA
1 ATAAATATAAATTGATGTTATATCAATA
75696059 ATTGTATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 8 0.32
28 8 0.32
29 9 0.36
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (29 bp):
ATAAATATAAATTGATGTTATATCAATAT
Found at i:75707074 original size:47 final size:47
Alignment explanation
Indices: 75707000--75707114 Score: 160
Period size: 47 Copynumber: 2.4 Consensus size: 47
75706990 ACCATGGTTT
*
75707000 TACACGAATCACATATCACACTCATGCCATATCCCAGATATGATCTTA
1 TACA-GAAGCACATATCACACTCATGCCATATCCCAGATATGATCTTA
* *
75707048 TACAGTAGCACATATCACAC-CGATGCCATATCCCAGATATGGTCTTA
1 TACAGAAGCACATATCACACTC-ATGCCATATCCCAGATATGATCTTA
*
75707095 TACGGAAGCACATAATCACA
1 TACAGAAGCACAT-ATCACA
75707115 TCTCTCCGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.82
48 10 0.17
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (47 bp):
TACAGAAGCACATATCACACTCATGCCATATCCCAGATATGATCTTA
Found at i:75707144 original size:53 final size:53
Alignment explanation
Indices: 75707023--75707168 Score: 153
Period size: 53 Copynumber: 2.9 Consensus size: 53
75707013 TATCACACTC
* * * *
75707023 ATGCCATATCCCAGATATGATCTTATACAG-TAGCACATATCACA-----CCG
1 ATGCCATAGCCCAGATATGGTCTTATACGGAAAGCACATATCACATCTCTCCG
*
75707070 ATGCCATATCCCAGATATGGTCTTATACGG-AAGCACATAATCACATCTCTCCG
1 ATGCCATAGCCCAGATATGGTCTTATACGGAAAGCACAT-ATCACATCTCTCCG
* * * *
75707123 ATGCCATAGCCTAGTTGTGGTCTTATACGGAAATCACATATCACAT
1 ATGCCATAGCCCAGATATGGTCTTATACGGAAAGCACATATCACAT
75707169 GTTGCCATGG
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
47 35 0.42
48 6 0.07
53 36 0.43
54 7 0.08
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (53 bp):
ATGCCATAGCCCAGATATGGTCTTATACGGAAAGCACATATCACATCTCTCCG
Found at i:75708370 original size:3 final size:3
Alignment explanation
Indices: 75708362--75708393 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
75708352 ACTTATTAAA
75708362 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
75708394 TTTTTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:75714272 original size:20 final size:18
Alignment explanation
Indices: 75714236--75714272 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
75714226 ACAAAAGATT
75714236 ATTTAATTATTATTTGAC
1 ATTTAATTATTATTTGAC
75714254 ATTTAATATATTAATTTGA
1 ATTTAAT-TATT-ATTTGA
75714273 TAAATTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 4 0.24
20 6 0.35
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTTAATTATTATTTGAC
Found at i:75721562 original size:9 final size:9
Alignment explanation
Indices: 75721550--75721578 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
75721540 CAATGTGCCC
75721550 AATTAGTGG
1 AATTAGTGG
75721559 AATTAGTGG
1 AATTAGTGG
75721568 AATTAGTGG
1 AATTAGTGG
75721577 AA
1 AA
75721579 CCTACTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (9 bp):
AATTAGTGG
Found at i:75730036 original size:17 final size:19
Alignment explanation
Indices: 75730011--75730047 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
75730001 AAACAATTAA
*
75730011 TTAACATTA-TAAATAAAT
1 TTAACATTAGGAAATAAAT
75730029 TTAA-ATTAGGAAATAAAT
1 TTAACATTAGGAAATAAAT
75730047 T
1 T
75730048 CAATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
TTAACATTAGGAAATAAAT
Found at i:75731380 original size:20 final size:20
Alignment explanation
Indices: 75731342--75731389 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
75731332 TAAATTTTAA
* **
75731342 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
75731362 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
75731382 AAA-ATAAA
1 AAAGATAAA
75731390 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:75731414 original size:27 final size:26
Alignment explanation
Indices: 75731384--75731446 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
75731374 AGATAATTAA
75731384 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
75731411 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
75731438 AATATAAAT
1 AATA-AAAT
75731447 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:75731433 original size:15 final size:15
Alignment explanation
Indices: 75731413--75731442 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75731403 ATAATCCTAA
*
75731413 TAATTATCTTAATAT
1 TAATTATCCTAATAT
75731428 TAATTATCCTAATAT
1 TAATTATCCTAATAT
75731443 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:75731858 original size:21 final size:21
Alignment explanation
Indices: 75731834--75731874 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
75731824 TTAAAACGCA
75731834 TATGAAAAATAAAGAGAACCC
1 TATGAAAAATAAAGAGAACCC
75731855 TATGAAAAATAAAGAGAACC
1 TATGAAAAATAAAGAGAACC
75731875 TTAAGTTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.12, G:0.15, T:0.15
Consensus pattern (21 bp):
TATGAAAAATAAAGAGAACCC
Found at i:75732988 original size:12 final size:13
Alignment explanation
Indices: 75732973--75733039 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 13
75732963 TATCTAAAAC
75732973 AATAAATAAG-AA
1 AATAAATAAGAAA
75732985 AAT-AATAAGAAA
1 AATAAATAAGAAA
75732997 AATAAATAA-AAA
1 AATAAATAAGAAA
*
75733009 TA-AAATAA-ACTAA
1 AATAAATAAGA--AA
*
75733022 AATAAA-AATAAA
1 AATAAATAAGAAA
75733034 AATAAA
1 AATAAA
75733040 AATTGGGTTG
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
11 13 0.28
12 20 0.43
13 10 0.21
14 4 0.09
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (13 bp):
AATAAATAAGAAA
Found at i:75733005 original size:16 final size:14
Alignment explanation
Indices: 75732984--75733033 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 14
75732974 ATAAATAAGA
75732984 AAATAATAAGAAAAAT
1 AAATAA-AA-AAAAAT
75733000 AAATAAAAATAAAAT
1 AAATAAAAA-AAAAT
75733015 AAACTAAAATAAAAAT
1 AAA-TAAAA-AAAAAT
75733031 AAA
1 AAA
75733034 AATAAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 1 0.03
15 10 0.32
16 19 0.61
17 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (14 bp):
AAATAAAAAAAAAT
Found at i:75733011 original size:6 final size:6
Alignment explanation
Indices: 75732983--75733042 Score: 58
Period size: 6 Copynumber: 10.8 Consensus size: 6
75732973 AATAAATAAG
* * *
75732983 AAAATA ATAAGA AAAAT- -AAATA AAAAT- AAAAT- AAACT- AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
75733026 AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAAT
75733043 TGGGTTGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
4 4 0.09
5 13 0.29
6 28 0.62
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:75737595 original size:12 final size:13
Alignment explanation
Indices: 75737573--75737602 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
75737563 TAACCACTTT
75737573 AATATAAAATAAA
1 AATATAAAATAAA
75737586 AATA-AAAATAAA
1 AATATAAAATAAA
75737598 AATAT
1 AATAT
75737603 TTTTATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AATATAAAATAAA
Found at i:75742669 original size:4 final size:4
Alignment explanation
Indices: 75742655--75742686 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
75742645 CTTTAACATA
75742655 AAAT CAAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAA
75742687 ATAAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:75743951 original size:14 final size:14
Alignment explanation
Indices: 75743932--75743978 Score: 60
Period size: 13 Copynumber: 3.3 Consensus size: 14
75743922 CGATGTGGAT
75743932 AAAAAAATTATGT-
1 AAAAAAATTATGTA
*
75743945 AAAAAAATATATTTA
1 AAAAAAAT-TATGTA
75743960 TAAAAAAATTATGTA
1 -AAAAAAATTATGTA
75743975 AAAA
1 AAAA
75743979 TACCCTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 8 0.28
14 8 0.28
15 5 0.17
16 8 0.28
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
AAAAAAATTATGTA
Found at i:75743987 original size:27 final size:28
Alignment explanation
Indices: 75743930--75743989 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
75743920 TACGATGTGG
* *
75743930 ATAAAAAAATTATGTAAAAAAATATATTT
1 ATAAAAAAATTATGT-AAAAAATACACTT
*
75743959 ATAAAAAAATTATGT-AAAAATACCCTT
1 ATAAAAAAATTATGTAAAAAATACACTT
75743986 ATAA
1 ATAA
75743990 TAATTTTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 13 0.46
29 15 0.54
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (28 bp):
ATAAAAAAATTATGTAAAAAATACACTT
Found at i:75755501 original size:7 final size:7
Alignment explanation
Indices: 75755491--75755516 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
75755481 AATAAGCAAT
75755491 AATTTAA
1 AATTTAA
75755498 AATTTAA
1 AATTTAA
75755505 AATTTAA
1 AATTTAA
75755512 AATTT
1 AATTT
75755517 TTCAACAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
AATTTAA
Found at i:75755625 original size:29 final size:30
Alignment explanation
Indices: 75755574--75755642 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
75755564 TTCATAAATC
* *
75755574 TAAAATTTAATTATTATA-TTTTTA-CTTT
1 TAAAATTTAATTATTATACTTTTCAGATTT
* *
75755602 TAAAAATTTAATTCTTTTACTTTTCAGATTT
1 T-AAAATTTAATTATTATACTTTTCAGATTT
75755633 TAAAATTTAA
1 TAAAATTTAA
75755643 GTGCAGATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 15 0.44
30 14 0.41
31 4 0.12
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (30 bp):
TAAAATTTAATTATTATACTTTTCAGATTT
Found at i:75761704 original size:42 final size:42
Alignment explanation
Indices: 75761632--75761716 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
75761622 AAGTGATTTG
75761632 TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
1 TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
* * *
75761674 TCTTTATTACTTTCAACTCAACGCTTTATGAAATTGATAACA
1 TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
75761716 T
1 T
75761717 TTCTACCTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (42 bp):
TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
Found at i:75777686 original size:23 final size:24
Alignment explanation
Indices: 75777642--75777686 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
75777632 TATTATTTTT
* *
75777642 AAATCCAATTAATGAAATTAAAAA
1 AAATCCAATAAATGAAAATAAAAA
*
75777666 AAAT-CAATAAATTAAAATAAA
1 AAATCCAATAAATGAAAATAAA
75777687 TTTGGCTTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (24 bp):
AAATCCAATAAATGAAAATAAAAA
Found at i:75781328 original size:4 final size:4
Alignment explanation
Indices: 75781314--75781345 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
75781304 CTTTAACATA
75781314 AAAT CAAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAA
75781346 ATAAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:75782609 original size:14 final size:14
Alignment explanation
Indices: 75782590--75782636 Score: 60
Period size: 13 Copynumber: 3.3 Consensus size: 14
75782580 CGATGTGGAT
75782590 AAAAAAATTATGT-
1 AAAAAAATTATGTA
*
75782603 AAAAAAATATATTTA
1 AAAAAAAT-TATGTA
75782618 TAAAAAAATTATGTA
1 -AAAAAAATTATGTA
75782633 AAAA
1 AAAA
75782637 TACCCTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 8 0.28
14 8 0.28
15 5 0.17
16 8 0.28
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
AAAAAAATTATGTA
Found at i:75782645 original size:27 final size:28
Alignment explanation
Indices: 75782588--75782647 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
75782578 TACGATGTGG
* *
75782588 ATAAAAAAATTATGTAAAAAAATATATTT
1 ATAAAAAAATTATGT-AAAAAATACACTT
*
75782617 ATAAAAAAATTATGT-AAAAATACCCTT
1 ATAAAAAAATTATGTAAAAAATACACTT
75782644 ATAA
1 ATAA
75782648 TAATTTTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 13 0.46
29 15 0.54
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (28 bp):
ATAAAAAAATTATGTAAAAAATACACTT
Found at i:75794201 original size:7 final size:7
Alignment explanation
Indices: 75794191--75794216 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
75794181 AATAAGCAAT
75794191 AATTTAA
1 AATTTAA
75794198 AATTTAA
1 AATTTAA
75794205 AATTTAA
1 AATTTAA
75794212 AATTT
1 AATTT
75794217 TTTCAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
AATTTAA
Found at i:75794326 original size:29 final size:30
Alignment explanation
Indices: 75794275--75794343 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
75794265 TTCATAAATC
* *
75794275 TAAAATTTAATTATTATA-TTTTTA-CTTT
1 TAAAATTTAATTATTATACTTTTCAGATTT
* *
75794303 TAAAAATTTAATTCTTTTACTTTTCAGATTT
1 T-AAAATTTAATTATTATACTTTTCAGATTT
75794334 TAAAATTTAA
1 TAAAATTTAA
75794344 GTGCAGATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 15 0.44
30 14 0.41
31 4 0.12
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (30 bp):
TAAAATTTAATTATTATACTTTTCAGATTT
Found at i:75800416 original size:42 final size:42
Alignment explanation
Indices: 75800344--75800428 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
75800334 AAGTGATTTG
75800344 TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
1 TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
* * *
75800386 TCTTTATTACTTTCAACTCAACGCTTTATGAAATTGATAACA
1 TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
75800428 T
1 T
75800429 TTCTACCTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (42 bp):
TCTTTATTACTTTCAACCCAACCCTCTATGAAATTGATAACA
Found at i:75807019 original size:13 final size:13
Alignment explanation
Indices: 75806998--75807032 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
75806988 AAATTTTTCC
75806998 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
75807011 AAAGTACTTCTCA
1 AAAGCACTTCTCA
75807024 AAAGCACTT
1 AAAGCACTT
75807033 TTCCACAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:75807153 original size:17 final size:17
Alignment explanation
Indices: 75807131--75807169 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
75807121 CGGAAATATT
* *
75807131 TATTTTAATGTTTTTTA
1 TATTTTAATGTATTATA
*
75807148 TATTTTTATGTATTATA
1 TATTTTAATGTATTATA
75807165 TATTT
1 TATTT
75807170 AAAATTTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (17 bp):
TATTTTAATGTATTATA
Found at i:75809683 original size:10 final size:10
Alignment explanation
Indices: 75809668--75809696 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
75809658 TCCTAATCGG
75809668 TGGAAAATTC
1 TGGAAAATTC
75809678 TGGAAAATTC
1 TGGAAAATTC
75809688 TGGAAAATT
1 TGGAAAATT
75809697 ATTTTAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (10 bp):
TGGAAAATTC
Found at i:75811294 original size:15 final size:15
Alignment explanation
Indices: 75811274--75811302 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75811264 GTGAAATAAA
75811274 CTGAAATAATAAAAG
1 CTGAAATAATAAAAG
75811289 CTGAAATAATAAAA
1 CTGAAATAATAAAA
75811303 TATTGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (15 bp):
CTGAAATAATAAAAG
Found at i:75812795 original size:22 final size:18
Alignment explanation
Indices: 75812751--75812792 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
75812741 AATTTTAGGT
75812751 CAATTATACATACACCAA
1 CAATTATACATACACCAA
75812769 CAATTATACATACACCAA
1 CAATTATACATACACCAA
75812787 CAATTA
1 CAATTA
75812793 ATTTTAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (18 bp):
CAATTATACATACACCAA
Found at i:75812819 original size:51 final size:51
Alignment explanation
Indices: 75812725--75812825 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
75812715 CTTGAAGTAC
* * * * *
75812725 ACATATACCAACAATTAATTTTAGGTCAATTATACATACACCAACAATTAT
1 ACATACACCAACAATTAATTTTAGGTCAAATAAAAATAAACCAACAATTAT
*
75812776 ACATACACCAACAATTAATTTTAGGGT-AAATAAAAATAAACCAAGAATTA
1 ACATACACCAACAATTAATTTTA-GGTCAAATAAAAATAAACCAACAATTA
75812826 ATTTTAGGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.93
52 3 0.07
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (51 bp):
ACATACACCAACAATTAATTTTAGGTCAAATAAAAATAAACCAACAATTAT
Found at i:75812852 original size:33 final size:33
Alignment explanation
Indices: 75812769--75812878 Score: 150
Period size: 33 Copynumber: 3.3 Consensus size: 33
75812759 CATACACCAA
75812769 CAATTATACATACACCAACAATTAATTTTAGGGT
1 CAATTATACATACACCAACAATTAATTTTA-GGT
* * * * *
75812803 -AAATAAAAATAAACCAAGAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
*
75812835 CAATTATACACACACCAACAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
75812868 CAATTATACAT
1 CAATTATACAT
75812879 GCTTTATAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
32 3 0.05
33 60 0.95
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.31
Consensus pattern (33 bp):
CAATTATACATACACCAACAATTAATTTTAGGT
Found at i:75816196 original size:118 final size:120
Alignment explanation
Indices: 75815905--75816479 Score: 1038
Period size: 118 Copynumber: 4.8 Consensus size: 120
75815895 TTTTCAAGTT
*
75815905 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
75815970 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
75816025 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
75816090 TAATATAAGAAT-TTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
75816143 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
75816208 TAATATAAGAATATTAATTATTAAGAA-TTTATTAAATTATATA-TTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
75816261 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
75816326 TAATATAAGAATATTAATTATTAAGAATTTTAATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-ATTAAATTATATAGTTTAATTAAA
75816382 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT-ATTATATTATGATTT-A-TAAA
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA-TATATTATGATTTCAGTAAA
75816444 TTAATATAAGTAATATTAATTATTAAGAATTATTAT
65 TTAATATAAG-AATATTAATTATTAAGAATT-TTAT
75816480 ATATAATTTA
Statistics
Matches: 446, Mismatches: 1, Indels: 16
0.96 0.00 0.03
Matches are distributed among these distances:
118 204 0.46
119 61 0.14
120 114 0.26
121 67 0.15
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:75816352 original size:16 final size:16
Alignment explanation
Indices: 75816331--75816361 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75816321 TAAATTAATA
75816331 TAAGAATATTAATTAT
1 TAAGAATATTAATTAT
*
75816347 TAAGAATTTTAATTA
1 TAAGAATATTAATTA
75816362 AATTATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TAAGAATATTAATTAT
Found at i:75816373 original size:18 final size:18
Alignment explanation
Indices: 75816352--75816387 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75816342 ATTATTAAGA
*
75816352 ATTTTAATTAAATTATAT
1 ATTTTAATTAAAATATAT
75816370 ATTTTAATTAAAATATAT
1 ATTTTAATTAAAATATAT
75816388 TTAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:75816719 original size:234 final size:229
Alignment explanation
Indices: 75816478--75817042 Score: 934
Period size: 234 Copynumber: 2.5 Consensus size: 229
75816468 AAGAATTATT
75816478 ATATATAATTTAAT-AATTCTTAATAA-TAATATTCTTATATTAATTACTGAAATCATAATATAT
1 ATATATAA-TTAATAAATTCTTAATAATTAATATTCTTATATTAATTACTGAAATCATAATATAT
75816541 GATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
65 GATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TTA
*
75816606 ATAAATTCTTAATAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAA
129 ATAAATTCTTAATAA-TAATATTC-T-TATT-ATTTACTCAAATCATAATATATGATACTGTAAA
75816671 ATATAAA-TAACATAATTATTATTAAATATATTTTAATTAAA
190 ATATAAATTAACATAATTATTATTAAATATA-TTTAATT-AA
75816712 ATATATAATTAATAAATTCTT-ATAATTAATATTCTTATATTAATTACTGAAATCATAATATATG
1 ATATATAATTAATAAATTCTTAATAATTAATATTCTTATATTAATTACTGAAATCATAATATATG
*
75816776 ATACTGTAAAATATAAATTAACATAATTATTA-T-AATATATTTTAATTAAACTATATAATTAAT
66 ATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTAAT
75816839 AAATTCTTAATAATAATATTCTTATTATTTACTCAAATCATAATATATGATACTGTAAAATATAA
131 AAATTCTTAATAATAATATTCTTATTATTTACTCAAATCATAATATATGATACTGTAAAATATAA
75816904 ATTAACATAATTATTATTAAATATATTTAATTAA
196 ATTAACATAATTATTATTAAATATATTTAATTAA
*
75816938 ATATATAATTAATAAAATTC-TAATAATTAATATTCTTATA-TAATTTACT-CAATCATAATATA
1 ATATATAATTAAT-AAATTCTTAATAATTAATATTCTTATATTAA-TTACTGAAATCATAATATA
75817000 TGATACTGT-AAATATAAATTAACATAATTATTATTAATATATA
64 TGATACTGTAAAATATAAATTAACATAATTATTATTAA-ATATA
75817043 ACTGAAATTA
Statistics
Matches: 319, Mismatches: 3, Indels: 24
0.92 0.01 0.07
Matches are distributed among these distances:
225 24 0.08
226 41 0.13
227 76 0.24
228 32 0.10
229 1 0.00
230 8 0.03
231 18 0.06
232 24 0.08
233 10 0.03
234 85 0.27
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (229 bp):
ATATATAATTAATAAATTCTTAATAATTAATATTCTTATATTAATTACTGAAATCATAATATATG
ATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTAAT
AAATTCTTAATAATAATATTCTTATTATTTACTCAAATCATAATATATGATACTGTAAAATATAA
ATTAACATAATTATTATTAAATATATTTAATTAA
Found at i:75816745 original size:15 final size:16
Alignment explanation
Indices: 75816715--75816755 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
75816705 AATTAAAATA
75816715 TATAATTAATAAATTCT
1 TATAATTAAT-AATTCT
75816732 TATAATTAAT-ATTCT
1 TATAATTAATAATTCT
75816747 TAT-ATTAAT
1 TATAATTAAT
75816756 TACTGAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 8 0.33
17 10 0.42
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
TATAATTAATAATTCT
Found at i:75816912 original size:112 final size:116
Alignment explanation
Indices: 75816438--75817041 Score: 921
Period size: 112 Copynumber: 5.3 Consensus size: 116
75816428 TATTATGATT
* * * ** **
75816438 TATAAATTAATATAAGTAATATTAAT-TATTAAGAATTATTATATATAATTTAAT-AATTCTTAA
1 TATAAATTAACATAATTATTATTAATATATT-TTAATTAAAATATATAA-TTAATAAATTCTTAA
*
75816501 TAA-TAATATTCTTATATTAATTACTGAAATCATAATATATGATACTGTAAAA
64 TAATTAATATTCTTATATTATTTACTGAAATCATAATATATGATACTGTAAAA
75816553 TATAAATTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAATTCTTAA
1 TATAAATTAACATAATTATTATT-AATATATTTTAATTAAAATATATAA-TTAATAAATTCTTAA
75816618 TAATTAATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAA
64 TAATTAATATTCTTATATT-ATTTACTGAAATCATAATATATGATACTGTAAAA
75816672 TATAAA-TAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTAATAAATTCTT-AT
1 TATAAATTAACATAATTATTATT-AATATATTTTAATTAAAATATATAATTAATAAATTCTTAAT
*
75816735 AATTAATATTCTTATATTAATTACTGAAATCATAATATATGATACTGTAAAA
65 AATTAATATTCTTATATTATTTACTGAAATCATAATATATGATACTGTAAAA
*
75816787 TATAAATTAACATAATTATTA-TAATATATTTTAATTAAACTATATAATTAATAAATTCTTAATA
1 TATAAATTAACATAATTATTATTAATATATTTTAATTAAAATATATAATTAATAAATTCTTAATA
*
75816851 A-TAATATTC-T-TATTATTTACTCAAATCATAATATATGATACTGTAAAA
66 ATTAATATTCTTATATTATTTACTGAAATCATAATATATGATACTGTAAAA
75816899 TATAAATTAACATAATTATTATTAA-ATATATTTAATT-AAATATATAATTAATAAAATTC-TAA
1 TATAAATTAACATAATTATTATTAATATAT-TTTAATTAAAATATATAATTAAT-AAATTCTTAA
* *
75816961 TAATTAATATTCTTATATAATTTACT-CAATCATAATATATGATACTGT-AAA
64 TAATTAATATTCTTATATTATTTACTGAAATCATAATATATGATACTGTAAAA
75817012 TATAAATTAACATAATTATTATTAATATAT
1 TATAAATTAACATAATTATTATTAATATAT
75817042 AACTGAAATT
Statistics
Matches: 460, Mismatches: 15, Indels: 29
0.91 0.03 0.06
Matches are distributed among these distances:
112 81 0.18
113 53 0.12
114 71 0.15
115 74 0.16
116 56 0.12
117 29 0.06
118 57 0.12
119 39 0.08
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (116 bp):
TATAAATTAACATAATTATTATTAATATATTTTAATTAAAATATATAATTAATAAATTCTTAATA
ATTAATATTCTTATATTATTTACTGAAATCATAATATATGATACTGTAAAA
Found at i:75820084 original size:31 final size:32
Alignment explanation
Indices: 75820030--75820133 Score: 129
Period size: 33 Copynumber: 3.2 Consensus size: 32
75820020 ATTATAAAGC
75820030 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTAT-ATTGACCTAAAATTAATTGTTGGTGT
* * *
75820063 GTGTATATTGACCT-AAATTAATTCTTGGTTT
1 ATGTATATTGACCTAAAATTAATTGTTGGTGT
* * *
75820094 ATTTTTATTTACCCTAAAATTAATTGTTGGTGT
1 ATGTATATTGA-CCTAAAATTAATTGTTGGTGT
75820127 ATGTATA
1 ATGTATA
75820134 ATTGTTGGTG
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
31 22 0.38
32 11 0.19
33 25 0.43
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (32 bp):
ATGTATATTGACCTAAAATTAATTGTTGGTGT
Found at i:75820137 original size:18 final size:18
Alignment explanation
Indices: 75820114--75820155 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
75820104 ACCCTAAAAT
75820114 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
75820132 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
75820150 TAATTG
1 TAATTG
75820156 ACCTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (18 bp):
TAATTGTTGGTGTATGTA
Found at i:75821534 original size:28 final size:28
Alignment explanation
Indices: 75821501--75821613 Score: 75
Period size: 28 Copynumber: 3.6 Consensus size: 28
75821491 TTTTTATTAT
75821501 AATATTTTATTATTTCAGTTTATTTCAC
1 AATATTTTATTATTTCAGTTTATTTCAC
* * *
75821529 AATATTTATTTTAAGTATT-AGATATATTATACATT
1 AATATTT-TATT-A-T-TTCAG-TTTATT-T-CA-C
*
75821564 AATATTTATTTTATTATTTCAGTTCATTTCAC
1 AATA--T--TTTATTATTTCAGTTTATTTCAC
75821596 AATATTTTATTATTTCAG
1 AATATTTTATTATTTCAG
75821614 CTTTTATTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 26
0.66 0.07 0.27
Matches are distributed among these distances:
28 20 0.31
29 3 0.05
30 2 0.03
31 3 0.05
32 11 0.17
33 3 0.05
34 3 0.05
35 10 0.15
36 3 0.05
37 2 0.03
38 3 0.05
39 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (28 bp):
AATATTTTATTATTTCAGTTTATTTCAC
Found at i:75821539 original size:32 final size:32
Alignment explanation
Indices: 75821503--75821602 Score: 105
Period size: 32 Copynumber: 3.0 Consensus size: 32
75821493 TTTATTATAA
75821503 TATTTTATTATTTCAGTTTATTTCACAATATT
1 TATTTTATTATTTCAGTTTATTTCACAATATT
* * *
75821535 TATTTTAAGTA-TT-AGATATATTATACATTAATATT
1 TATTTT-ATTATTTCAG-TTTATT-T-CA-CAATATT
*
75821570 TATTTTATTATTTCAGTTCATTTCACAATATT
1 TATTTTATTATTTCAGTTTATTTCACAATATT
75821602 T
1 T
75821603 TATTATTTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
31 2 0.04
32 20 0.37
33 6 0.11
34 6 0.11
35 18 0.33
36 2 0.04
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (32 bp):
TATTTTATTATTTCAGTTTATTTCACAATATT
Found at i:75821620 original size:15 final size:15
Alignment explanation
Indices: 75821600--75821628 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75821590 TTTCACAATA
75821600 TTTTATTATTTCAGC
1 TTTTATTATTTCAGC
75821615 TTTTATTATTTCAG
1 TTTTATTATTTCAG
75821629 TTTATTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTATTATTTCAGC
Found at i:75823217 original size:10 final size:10
Alignment explanation
Indices: 75823202--75823230 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
75823192 AGGTTAAAAT
75823202 AATTTTCCAG
1 AATTTTCCAG
75823212 AATTTTCCAG
1 AATTTTCCAG
75823222 AATTTTCCA
1 AATTTTCCA
75823231 CCGATTAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (10 bp):
AATTTTCCAG
Found at i:75825802 original size:13 final size:13
Alignment explanation
Indices: 75825786--75825820 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
75825776 GTGCTGTGGA
75825786 AAGTGCTTTTGAG
1 AAGTGCTTTTGAG
*
75825799 AAGTACTTTTGAG
1 AAGTGCTTTTGAG
75825812 AAGTGCTTT
1 AAGTGCTTT
75825821 GAAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (13 bp):
AAGTGCTTTTGAG
Found at i:75837418 original size:24 final size:23
Alignment explanation
Indices: 75837367--75837420 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
75837357 TTTCTTTTAA
* *
75837367 ATCTATTTATATTTATATATGTTT
1 ATCT-TTTAAATTTATATATATTT
75837391 -TCTTTTAAATTTATATATAATTT
1 ATCTTTTAAATTTATATAT-ATTT
75837414 ATCTTTT
1 ATCTTTT
75837421 TAAAGTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 14 0.54
23 6 0.23
24 6 0.23
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.63
Consensus pattern (23 bp):
ATCTTTTAAATTTATATATATTT
Found at i:75837557 original size:24 final size:23
Alignment explanation
Indices: 75837511--75837558 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
75837501 TCATTTCATG
*
75837511 TGTATTATTTATGTAGATAGATT
1 TGTATTATTTATATAGATAGATT
75837534 TGTATTATTTTATATAG-TATGATT
1 TGTATTA-TTTATATAGATA-GATT
75837558 T
1 T
75837559 TCTTCTTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (23 bp):
TGTATTATTTATATAGATAGATT
Found at i:75837638 original size:19 final size:19
Alignment explanation
Indices: 75837616--75837652 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
75837606 AATATATTAT
75837616 TTATTTTTATT-TCTATTTC
1 TTATTTTT-TTATCTATTTC
75837635 TTATTTTTTTATCTATTT
1 TTATTTTTTTATCTATTT
75837653 TAAAATTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (19 bp):
TTATTTTTTTATCTATTTC
Found at i:75837784 original size:13 final size:13
Alignment explanation
Indices: 75837766--75837793 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75837756 ATTTTAAAAC
75837766 TTGTTCCATGTTA
1 TTGTTCCATGTTA
75837779 TTGTTCCATGTTA
1 TTGTTCCATGTTA
75837792 TT
1 TT
75837794 TATGTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (13 bp):
TTGTTCCATGTTA
Found at i:75839896 original size:34 final size:34
Alignment explanation
Indices: 75839853--75839919 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
75839843 ATGCAAGTAT
75839853 CTCAAACAATAGAAAATAGATCGAAAACGACATA
1 CTCAAACAATAGAAAATAGATCGAAAACGACATA
75839887 CTCAAACAATAGAAAATAGATCGAAAACGACAT
1 CTCAAACAATAGAAAATAGATCGAAAACGACAT
75839920 TCTAAGACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.55, C:0.18, G:0.12, T:0.15
Consensus pattern (34 bp):
CTCAAACAATAGAAAATAGATCGAAAACGACATA
Found at i:75843614 original size:16 final size:17
Alignment explanation
Indices: 75843593--75843634 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
75843583 CGTTTGGCCC
*
75843593 TTTAAATTTTATA-AAA
1 TTTAAATTTAATAGAAA
75843609 TTTAAATTTAATAGAAA
1 TTTAAATTTAATAGAAA
*
75843626 ATTAAATTT
1 TTTAAATTT
75843635 CATTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TTTAAATTTAATAGAAA
Found at i:75845438 original size:16 final size:16
Alignment explanation
Indices: 75845419--75845449 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
75845409 TTATCAAGAC
75845419 AAAATTAACTTCATTT
1 AAAATTAACTTCATTT
75845435 AAAATTAACTTCATT
1 AAAATTAACTTCATT
75845450 CCTATTCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAATTAACTTCATTT
Found at i:75847811 original size:34 final size:35
Alignment explanation
Indices: 75847767--75847833 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
75847757 CAGTAAAATA
75847767 TTTTCCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
75847801 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
75847834 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:75853721 original size:25 final size:24
Alignment explanation
Indices: 75853667--75853722 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
75853657 ATATTATTAA
*
75853667 TTTTTTAATAAAAATTTTATAACT
1 TTTTTTAATAAAAATTTTACAACT
*
75853691 TATTTTTAATAAATTATGTTTACAA-T
1 T-TTTTTAATAAA-AAT-TTTACAACT
75853717 TTTTTT
1 TTTTTT
75853723 GATTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 16 0.59
26 4 0.15
27 6 0.22
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTTTAATAAAAATTTTACAACT
Found at i:75856751 original size:4 final size:4
Alignment explanation
Indices: 75856742--75856766 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
75856732 TTTATATATG
75856742 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
75856767 ATGCATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:75857308 original size:15 final size:16
Alignment explanation
Indices: 75857288--75857318 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
75857278 CTATTTGGAG
75857288 TTAATTTTT-TTAATT
1 TTAATTTTTATTAATT
75857303 TTAATTTTTATTAATT
1 TTAATTTTTATTAATT
75857319 AATTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTAATTTTTATTAATT
Found at i:75861664 original size:30 final size:30
Alignment explanation
Indices: 75861628--75861688 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
75861618 AAGATCAAAG
75861628 ATTGTTTACTTAGTTTAGATTAATAATCTT
1 ATTGTTTACTTAGTTTAGATTAATAATCTT
75861658 ATTGTTTACTTAGTTTAGATTAATAATCTT
1 ATTGTTTACTTAGTTTAGATTAATAATCTT
75861688 A
1 A
75861689 CCTTTGGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (30 bp):
ATTGTTTACTTAGTTTAGATTAATAATCTT
Found at i:75872719 original size:31 final size:31
Alignment explanation
Indices: 75872676--75872737 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
75872666 AGTTTTTTAC
*
75872676 TATTCTTGTATTTAGA-ATTTATATGATTATT
1 TATTCTTGTATTTACACATTT-TATGATTATT
*
75872707 TATTCCTT-TATTTACACATTTTATTATTATT
1 TATT-CTTGTATTTACACATTTTATGATTATT
75872738 ACTATTAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.60
Consensus pattern (31 bp):
TATTCTTGTATTTACACATTTTATGATTATT
Found at i:75882392 original size:45 final size:45
Alignment explanation
Indices: 75882281--75882400 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 45
75882271 AGCCATCTTG
* * *
75882281 GCGAATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATCAAAGACA
1 GCGAATCTTATTTTCCTGAAGTTGTAGTGGAGCAGATCAAAGACA
* * * ** *
75882326 -CAAATCTTA-TCTCCATAAAGTTGTAGTGGAGCAGATTGAAGATA
1 GCGAATCTTATTTTCC-TGAAGTTGTAGTGGAGCAGATCAAAGACA
*
75882370 GCGAATCTTATTTTCCTGAAGTTGCAGTGGA
1 GCGAATCTTATTTTCCTGAAGTTGTAGTGGA
75882401 ATAGATTAAA
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
43 2 0.03
44 32 0.54
45 21 0.36
46 4 0.07
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
GCGAATCTTATTTTCCTGAAGTTGTAGTGGAGCAGATCAAAGACA
Found at i:75882418 original size:89 final size:89
Alignment explanation
Indices: 75882281--75882636 Score: 270
Period size: 89 Copynumber: 3.9 Consensus size: 89
75882271 AGCCATCTTG
* * *
75882281 GCGAATCTTATCTCCCTGAAGTTGTAGT-GAAGCAGATCAAAGAC-ACAAATCTTATCTCCATAA
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTAAAG-CTACAAATCTTATCTCCCTAA
*
75882344 AGTTGTAGTGGAGCAGATTGAAGATA
64 AGTTGCAGTGGAGCAGATTGAAGATA
* * *
75882370 GCGAATCTTATTTTCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAATTACATATCTTATCTC
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAC-----A-A-ATCTTATCTC
* * * *
75882435 CCTGAAGTTGCAGTGGAGTAGATTTAAAATA
59 CCTAAAGTTGCAGTGGAGCAGATTGAAGATA
*** * * * * * ** * **
75882466 AAAAATCTTGTCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTATGAACCTTATCTCCCTAGTG
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATCTTATCTCCCTAAAG
* * *
75882531 TTGTAGTGGAGCAGGTTGAAGTTA
66 TTGCAGTGGAGCAGATTGAAGATA
* * * * * * *
75882555 -C-AAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTTATCTCTCTAA
1 GCGAA-TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA-CAAATCTTATCTCCCTAA
*
75882618 AGTTGCAGTGGAACAGATT
64 AGTTGCAGTGGAGCAGATT
75882637 AAAGCTACAA
Statistics
Matches: 204, Mismatches: 52, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
87 2 0.01
88 33 0.16
89 94 0.46
90 4 0.02
94 1 0.00
95 1 0.00
96 69 0.34
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (89 bp):
GCGAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATCTTATCTCCCTAAAG
TTGCAGTGGAGCAGATTGAAGATA
Found at i:75882473 original size:96 final size:96
Alignment explanation
Indices: 75882329--75882507 Score: 216
Period size: 96 Copynumber: 1.9 Consensus size: 96
75882319 AAAGACACAA
* * *** * *
75882329 ATCTTATCTCCATAAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCTTAT-TTTCCTGAAGTT
1 ATCTTATCTCCATAAAGTTGCAGTGGAGCAGATTGAAAATAAAAAATCTTGTCTCT-CTGAAGTT
* *
75882393 GCAGTGGAATAGATTAAAGCTACAAATTACAT
65 GCAGTAGAACAGATTAAAGCTACAAATTACAT
* * * *
75882425 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTTAAAATAAAAAATCTTGTCTCTCTGAAGTTG
1 ATCTTATCTCCATAAAGTTGCAGTGGAGCAGATTGAAAATAAAAAATCTTGTCTCTCTGAAGTTG
*
75882490 CAGTAGAGCAGATTAAAG
66 CAGTAGAACAGATTAAAG
75882508 TTATGAACCT
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
96 66 0.97
97 2 0.03
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (96 bp):
ATCTTATCTCCATAAAGTTGCAGTGGAGCAGATTGAAAATAAAAAATCTTGTCTCTCTGAAGTTG
CAGTAGAACAGATTAAAGCTACAAATTACAT
Found at i:75884576 original size:18 final size:18
Alignment explanation
Indices: 75884553--75884587 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75884543 TACTGAAGAA
75884553 TTGACTGCTACCGAATAC
1 TTGACTGCTACCGAATAC
* *
75884571 TTGACTGTTACTGAATA
1 TTGACTGCTACCGAATA
75884588 AATGATTGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (18 bp):
TTGACTGCTACCGAATAC
Found at i:75884625 original size:24 final size:22
Alignment explanation
Indices: 75884579--75884625 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
75884569 ACTTGACTGT
* *
75884579 TACTGAATAAATGATTGACTGA
1 TACTGAATAAATGATTAAATGA
75884601 TACTGAATAAAAATGATTAAATGA
1 TACTGAAT--AAATGATTAAATGA
75884625 T
1 T
75884626 TGTTATTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
24 13 0.62
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (22 bp):
TACTGAATAAATGATTAAATGA
Found at i:75885866 original size:44 final size:45
Alignment explanation
Indices: 75885816--75886434 Score: 352
Period size: 44 Copynumber: 13.7 Consensus size: 45
75885806 AGCTATGAAC
* *
75885816 CTTATCTCCCTAG-AGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
* *
75885860 CTTATCTCCCT-GAAGTTGCAGTGGAGCAGACTGAAGATGGA-AAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAG-T-TACAAAT
** * * ** * *
75885905 CTTATCTATCTA-AAGTTGCAGTAGAGCAGATTAAACCTATAAAC
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
* * * * *
75885949 CTTATCTCCCT-GAATTTGCAGCGGAGCA-AGTTAAAAATAAACAAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGA-TT-GAAGT-TACAAAT
* * * * * * *
75885995 CTTGTCTTCC-GGAAGTTGCAGTGAAGCAGGTTGAAATTACAAGT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
* * * * * * *
75886039 TTTATCTTCCTA-AAGTTACAGTGGAGCAAACTGAAGATAGCGAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAAT
* * * *
75886084 CTTATTTCCCTA-AAGTTGCAGTGGAACTGATTAAAGCTACAAATTATGGCAAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATT---G----AAGTTA---CAAAT
* * ** * *
75886138 ATTATCTCCCT-GAAATTGCAGTGGAGCAGATTGAAGCCACTAAC
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
* * * * *
75886182 CTTATCTCCCT-GAAGTTACAGTGGAGTAGGTTAAAGTTACAAGT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
* * *
75886226 CTTATCTCCCTA-AAGTTGCAGTGGAGGAGATCGAAGATAGCAAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAAT
* * * *
75886271 CTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAAGCTAGAAGT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
* * * * **
75886315 CTAATCTCCCTA-AAGTTACAGTGGAACAGATTGAAGATAGTGAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAAT
* * * * *
75886360 TTTATCTCCC-CGAAGTTGTAGTGGAGCAGATTGAAGCTACTAAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
** * *
75886404 CTTATCTTTCT-GAAGTTGTAGTGGAGTAGAT
1 CTTATCTCCCTAGAAGTTGCAGTGGAGCAGAT
75886435 GGAAACAACA
Statistics
Matches: 435, Mismatches: 110, Indels: 60
0.72 0.18 0.10
Matches are distributed among these distances:
43 3 0.01
44 225 0.52
45 138 0.32
46 29 0.07
47 3 0.01
48 1 0.00
51 1 0.00
52 4 0.01
54 31 0.07
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTAGAAGTTGCAGTGGAGCAGATTGAAGTTACAAAT
Found at i:75886125 original size:89 final size:89
Alignment explanation
Indices: 75885816--75886410 Score: 412
Period size: 89 Copynumber: 6.6 Consensus size: 89
75885806 AGCTATGAAC
* * * * * *
75885816 CTTATCTCCCT-AGAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGA-AGTTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCCCTAAAGTTACA
* * **
75885880 GTGGAGCAGACTGAAGATGGAAAAT
65 GTGGAGCAGATTGAAGATAGCGAAT
** * * * * * ** * * *
75885905 CTTATCTATCTAAAGTTGCAGTAGAGCAGATTAAACCTATAAACCTTATCTCCCTGAATTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCCCTAAAGTTACAG
* * * * *
75885970 CGGAGCA-AGTTAAAAATAAACAAAT
66 TGGAGCAGA-TTGAAGAT-AGCGAAT
* * * * * * *
75885995 CTTGTCTTCCGGAAGTTGCAGT-GAAGCAGGTTGAAA-TTACAAGTTTTATCTTCCTAAAGTTAC
1 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGATT-AAAGCTACAAGTCTTATCTCCCTAAAGTTAC
* *
75886058 AGTGGAGCAAACTGAAGATAGCGAAT
64 AGTGGAGCAGATTGAAGATAGCGAAT
* * * *
75886084 CTTATTTCCCTAAAGTTGCAGTGGAACTGATTAAAGCTACAAATTATGGCAAATATTATCTCCCT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAC--A--A--G----TCTTATCTCCCT
* ** * *
75886149 GAAA-TTGCAGTGGAGCAGATTGAAGCCA-CTAAC
56 -AAAGTTACAGTGGAGCAGATTGAAGATAGCGAAT
* ** * * *
75886182 CTTATCTCCCTGAAGTTACAGTGGAGTAGGTTAAAGTTACAAGTCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCCCTAAAGTTACAG
* * *
75886247 TGGAGGAGATCGAAGATAGCAAAT
66 TGGAGCAGATTGAAGATAGCGAAT
* * *
75886271 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAGAAGTCTAATCTCCCTAAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCCCTAAAGTTACAG
* *
75886336 TGGAACAGATTGAAGATAGTGAAT
66 TGGAGCAGATTGAAGATAGCGAAT
* * * * *
75886360 TTTATCTCCCCGAAGTTGTAGTGGAGCAGATTGAAGCTACTAA-TCTTATCT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAC-AAGTCTTATCT
75886411 TTCTGAAGTT
Statistics
Matches: 394, Mismatches: 90, Indels: 44
0.75 0.17 0.08
Matches are distributed among these distances:
87 3 0.01
88 35 0.09
89 216 0.55
90 63 0.16
91 5 0.01
92 1 0.00
93 1 0.00
94 1 0.00
95 1 0.00
96 1 0.00
98 35 0.09
99 29 0.07
100 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (89 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCCCTAAAGTTACAG
TGGAGCAGATTGAAGATAGCGAAT
Found at i:75886405 original size:133 final size:133
Alignment explanation
Indices: 75886132--75886434 Score: 324
Period size: 133 Copynumber: 2.3 Consensus size: 133
75886122 ACAAATTATG
* * * * * *
75886132 GCAAATATTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAGCCACTAACCTTATCTCCCTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACGAACCTAATCTCCCTAAAG
** * * * *
75886197 TTACAGTGGAGTAGGTTAAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGGAGATCGAAG
66 TTACAGTGGAACAGATTAAAGATACAAGTCTTATCTCCCCAAAGTTGCAGTGGAGCAGATCGAAG
75886262 ATA
131 ATA
* *
75886265 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-GAAGTCTAATCTCCCTAAA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACGAA-CCTAATCTCCCTAAA
* * * * * *
75886329 GTTACAGTGGAACAGATTGAAGATAGTGAA-TTTTATCTCCCCGAAGTTGTAGTGGAGCAGATTG
65 GTTACAGTGGAACAGATTAAAGATA--CAAGTCTTATCTCCCCAAAGTTGCAGTGGAGCAGATCG
*
75886393 AAGCTA
128 AAGATA
* ** * *
75886399 -CTAATCTTATCTTTCTGAAGTTGTAGTGGAGTAGAT
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
75886435 GGAAACAACA
Statistics
Matches: 141, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
132 2 0.01
133 104 0.74
134 33 0.23
135 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (133 bp):
GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACGAACCTAATCTCCCTAAAG
TTACAGTGGAACAGATTAAAGATACAAGTCTTATCTCCCCAAAGTTGCAGTGGAGCAGATCGAAG
ATA
Found at i:75888063 original size:9 final size:9
Alignment explanation
Indices: 75888051--75888076 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75888041 CACATTTTAT
75888051 TATTATTAC
1 TATTATTAC
75888060 TATTATTAC
1 TATTATTAC
75888069 TATTATTA
1 TATTATTA
75888077 TTGTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (9 bp):
TATTATTAC
Found at i:75891658 original size:13 final size:13
Alignment explanation
Indices: 75891640--75891666 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75891630 AGTTTACTAA
75891640 TTTTATTGATTAT
1 TTTTATTGATTAT
75891653 TTTTATTGATTAT
1 TTTTATTGATTAT
75891666 T
1 T
75891667 AATATTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTATTGATTAT
Found at i:75891673 original size:22 final size:22
Alignment explanation
Indices: 75891663--75891708 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 22
75891653 TTTTATTGAT
75891663 TATTAATATTAATTTATTATTA
1 TATTAATATTAATTTATTATTA
75891685 TATTAAAATATTAATTTATTATTA
1 TATT--AATATTAATTTATTATTA
75891709 AATTTTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.18
24 18 0.82
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TATTAATATTAATTTATTATTA
Found at i:75898765 original size:43 final size:43
Alignment explanation
Indices: 75898717--75898877 Score: 179
Period size: 43 Copynumber: 3.7 Consensus size: 43
75898707 AGGATTTCCA
75898717 ATATGTG-TTCTCATGTAAGACCACGTCTGGGACATTGGCATCG
1 ATATGTGATT-TCATGTAAGACCACGTCTGGGACATTGGCATCG
* * *
75898760 ATATGTGATTTCGA-GTAAGACCATGCCTGGGACATCGGCATCG
1 ATATGTGATTTC-ATGTAAGACCACGTCTGGGACATTGGCATCG
* * *
75898803 -TAATTGTGA-TTCGTGTAAGACC-CTGTCTGGGACAGTGGCATTG
1 AT-A-TGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATCG
*
75898846 ACATGTGATTTCATGTAAGACCACGTCTGGGA
1 ATATGTGATTTCATGTAAGACCACGTCTGGGA
75898878 TGTTCGCATT
Statistics
Matches: 98, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 6 0.06
43 83 0.85
44 9 0.09
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
ATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATCG
Found at i:75899709 original size:23 final size:21
Alignment explanation
Indices: 75899683--75899745 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
75899673 GTTTGCTTAT
75899683 ATTATAAGTAAATAGTAATAATA
1 ATTATAA-TAAATA-TAATAATA
75899706 ATTACT-A-AAATATAATAATA
1 ATTA-TAATAAATATAATAATA
75899726 A-TATAATAAA-ATAAT-ATA
1 ATTATAATAAATATAATAATA
75899744 AT
1 AT
75899746 AAAAGAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
18 5 0.14
19 8 0.22
20 12 0.33
21 5 0.14
23 5 0.14
24 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (21 bp):
ATTATAATAAATATAATAATA
Found at i:75899716 original size:21 final size:21
Alignment explanation
Indices: 75899692--75899756 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
75899682 TATTATAAGT
*
75899692 AAATAGTAATAATAAT-TACTA
1 AAATA-TAATAATAATATAATA
75899713 AAATATAATAATAATATAATA
1 AAATATAATAATAATATAATA
* *
75899734 AAATA-ATATAATAAAAGAATA
1 AAATATA-ATAATAATATAATA
75899755 AA
1 AA
75899757 GAAATAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
20 11 0.28
21 28 0.72
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (21 bp):
AAATATAATAATAATATAATA
Found at i:75899740 original size:13 final size:13
Alignment explanation
Indices: 75899714--75899754 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
75899704 TAATTACTAA
75899714 AATATAAT--AAT
1 AATATAATAAAAT
75899725 AATATAATAAAAT
1 AATATAATAAAAT
*
75899738 AATATAATAAAAG
1 AATATAATAAAAT
75899751 AATA
1 AATA
75899755 AAGAAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 8 0.30
13 19 0.70
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (13 bp):
AATATAATAAAAT
Found at i:75899762 original size:21 final size:20
Alignment explanation
Indices: 75899720--75899781 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
75899710 CTAAAATATA
*
75899720 ATAATAATATAATAAA-ATAAT
1 ATAATAA-AAAATAAAGA-AAT
75899741 ATAATAAAAGAATAAAGAAAT
1 ATAATAAAA-AATAAAGAAAT
* *
75899762 AAAATAGAAAAAGAAAGAAA
1 ATAATA-AAAAATAAAGAAA
75899782 GAACAGACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 1 0.03
21 30 0.86
22 4 0.11
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (20 bp):
ATAATAAAAAATAAAGAAAT
Found at i:75906733 original size:19 final size:20
Alignment explanation
Indices: 75906709--75906746 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
75906699 TAATTAGATT
75906709 TTAATTAA-GTAAATTTAGC
1 TTAATTAAGGTAAATTTAGC
*
75906728 TTAATTAAGGTTAATTTAG
1 TTAATTAAGGTAAATTTAG
75906747 TGTAAGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
TTAATTAAGGTAAATTTAGC
Found at i:75914503 original size:40 final size:40
Alignment explanation
Indices: 75914459--75914538 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75914449 AGTAATTTCT
75914459 TTGCAACTCATTTAACCTTCATCATCTAATAACTTGATTA
1 TTGCAACTCATTTAACCTTCATCATCTAATAACTTGATTA
75914499 TTGCAACTCATTTAACCTTCATCATCTAATAACTTGATTA
1 TTGCAACTCATTTAACCTTCATCATCTAATAACTTGATTA
75914539 ACTTTTTCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (40 bp):
TTGCAACTCATTTAACCTTCATCATCTAATAACTTGATTA
Found at i:75914835 original size:22 final size:22
Alignment explanation
Indices: 75914791--75914835 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
75914781 TTAATCATTA
* **
75914791 TTATTCAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
75914813 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
75914835 T
1 T
75914836 CGGTACAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:75915200 original size:23 final size:25
Alignment explanation
Indices: 75915164--75915209 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
75915154 ACTTTCAAAT
75915164 TTTCAATTTCATTT-GTA-ATTTAA
1 TTTCAATTTCATTTAGTACATTTAA
75915187 TTTCAA-TTCAATTTAGTACATTT
1 TTTCAATTTC-ATTTAGTACATTT
75915210 TTCCATATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.15
23 10 0.50
24 3 0.15
25 4 0.20
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTCAATTTCATTTAGTACATTTAA
Found at i:75915958 original size:13 final size:13
Alignment explanation
Indices: 75915940--75915970 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
75915930 CCCAATTTTC
75915940 TCTTTTCTTCCTT
1 TCTTTTCTTCCTT
*
75915953 TCTTTTCTTTCTT
1 TCTTTTCTTCCTT
75915966 TCTTT
1 TCTTT
75915971 CTTTTTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TCTTTTCTTCCTT
Found at i:75915965 original size:17 final size:17
Alignment explanation
Indices: 75915943--75915975 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75915933 AATTTTCTCT
75915943 TTTCTTCCTTTCTTTTC
1 TTTCTTCCTTTCTTTTC
*
75915960 TTTCTTTCTTTCTTTT
1 TTTCTTCCTTTCTTTT
75915976 TCTCCCTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTTCCTTTCTTTTC
Found at i:75916212 original size:22 final size:23
Alignment explanation
Indices: 75916174--75916221 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
75916164 TAAAAATCTT
*
75916174 ATAATATAATATAATAA-CAATA
1 ATAATATAATATAATAATAAATA
*
75916196 ATAATATACT-TATATAATAAATA
1 ATAATATAATATA-ATAATAAATA
75916219 ATA
1 ATA
75916222 CTTTTATACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 13 0.59
23 7 0.32
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
ATAATATAATATAATAATAAATA
Found at i:75918085 original size:44 final size:44
Alignment explanation
Indices: 75918012--75918103 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 44
75918002 TCGAAGTAAC
* * *
75918012 AGTAACAGTATGACACACATGGTGTCTCATCGACCCAAAGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACCCAAAGTCGA
** * * *
75918056 AGTAACAGTACGACACTTATAGTGCCTCATTGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACCCAAAGTCGA
75918100 AGTA
1 AGTA
75918104 TCCCTGAACA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACCCAAAGTCGA
Found at i:75919140 original size:12 final size:12
Alignment explanation
Indices: 75919123--75919156 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
75919113 AAAACCTGAG
75919123 TTTTTCCTTTTC
1 TTTTTCCTTTTC
75919135 TTTTT-CTTTTC
1 TTTTTCCTTTTC
75919146 TTCTTTCCTTT
1 TT-TTTCCTTT
75919157 CTCCCTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 8 0.40
12 8 0.40
13 4 0.20
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCCTTTTC
Found at i:75919251 original size:3 final size:3
Alignment explanation
Indices: 75919236--75919284 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
75919226 ATATATTAGT
* *
75919236 TAA TAA TAT TAA TAA TAA TACA TTA TAA TAA TAA T-A TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
75919280 TAA TA
1 TAA TA
75919285 TTTAATTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:75919266 original size:16 final size:16
Alignment explanation
Indices: 75919240--75919284 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
75919230 ATTAGTTAAT
75919240 AATATTAATAATAATAC
1 AATA-TAATAATAATAC
* *
75919257 ATTATAATAATAATAT
1 AATATAATAATAATAC
75919273 AATATAATAATA
1 AATATAATAATA
75919285 TTTAATTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAATAATAATAC
Found at i:75919282 original size:13 final size:14
Alignment explanation
Indices: 75919236--75919285 Score: 61
Period size: 13 Copynumber: 3.6 Consensus size: 14
75919226 ATATATTAGT
75919236 TAATAATATTAATAA
1 TAATAATA-TAATAA
75919251 TAATACAT-T-ATAA
1 TAATA-ATATAATAA
75919264 TAATAATATAAT-A
1 TAATAATATAATAA
75919277 TAATAATAT
1 TAATAATAT
75919286 TTAATTCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 20 0.62
14 3 0.09
15 5 0.16
16 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATAATATAATAA
Found at i:75919918 original size:10 final size:11
Alignment explanation
Indices: 75919902--75919943 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
75919892 AATTCTTATC
75919902 CTAATTAACCT
1 CTAATTAACCT
*
75919913 -TAATTAAACT
1 CTAATTAACCT
*
75919923 CTAATTAACCA
1 CTAATTAACCT
75919934 CTCAATTAAC
1 CT-AATTAAC
75919944 TTTGTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 9 0.35
11 10 0.38
12 7 0.27
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (11 bp):
CTAATTAACCT
Found at i:75921434 original size:48 final size:48
Alignment explanation
Indices: 75921332--75921435 Score: 124
Period size: 48 Copynumber: 2.1 Consensus size: 48
75921322 GGGACACGCC
* *
75921332 CGTGTGAGGTGGTTTAGGCCGTGTTTAGAGTCTGCTAAATAGACACGG
1 CGTGTGAGGTGGCTTAGGCCGTGTTTAGAATCTGCTAAATAGACACGG
*
75921380 CTGTGTG-GTGTGGCTTAGGCCGTG-TT-GCAATCTGTTAAATAGACACGGG
1 C-GTGTGAG-GTGGCTTAGGCCGTGTTTAG-AATCTGCTAAATAGACAC-GG
75921429 CGTGTGA
1 CGTGTGA
75921436 ACTACCCGTG
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
47 1 0.02
48 25 0.52
49 22 0.46
ACGTcount: A:0.19, C:0.15, G:0.36, T:0.30
Consensus pattern (48 bp):
CGTGTGAGGTGGCTTAGGCCGTGTTTAGAATCTGCTAAATAGACACGG
Found at i:75926196 original size:7 final size:7
Alignment explanation
Indices: 75926184--75926223 Score: 53
Period size: 7 Copynumber: 5.4 Consensus size: 7
75926174 ATTTCCTATT
75926184 ATTTTTA
1 ATTTTTA
75926191 ATTTTTA
1 ATTTTTA
75926198 ATTTTTAA
1 ATTTTT-A
75926206 ATTTTTTA
1 A-TTTTTA
*
75926214 AATTTTA
1 ATTTTTA
75926221 ATT
1 ATT
75926224 ATTTTTGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 20 0.69
8 4 0.14
9 5 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
ATTTTTA
Found at i:75926228 original size:17 final size:17
Alignment explanation
Indices: 75926191--75926234 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
75926181 ATTATTTTTA
*
75926191 ATTTTTAATTTTTAAAT
1 ATTTTTAAATTTTAAAT
*
75926208 -TTTTTAAATTTTAATT
1 ATTTTTAAATTTTAAAT
*
75926224 ATTTTTGAATT
1 ATTTTTAAATT
75926235 AATATGTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTTTTAAATTTTAAAT
Found at i:75928605 original size:14 final size:16
Alignment explanation
Indices: 75928586--75928617 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75928576 ATTAAAAATA
75928586 TAAA-TTATTT-TTTT
1 TAAATTTATTTATTTT
75928600 TAAATTTATTTATTTT
1 TAAATTTATTTATTTT
75928616 TA
1 TA
75928618 TTATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 6 0.38
16 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TAAATTTATTTATTTT
Found at i:75936474 original size:27 final size:26
Alignment explanation
Indices: 75936443--75936495 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
75936433 GTTAATTATG
75936443 ATATAAA-ATAAAATAAATTAAAATATT
1 ATATAAATAT-AAATAAA-TAAAATATT
*
75936470 ATATAAATATAAATAAATAATATATT
1 ATATAAATATAAATAAATAAAATATT
75936496 GTTAGCTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 8 0.33
27 14 0.58
28 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
ATATAAATATAAATAAATAAAATATT
Found at i:75936487 original size:21 final size:22
Alignment explanation
Indices: 75936450--75936494 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
75936440 ATGATATAAA
*
75936450 ATAAAATAAATTAAAATATTAT
1 ATAAAATAAATTAAAATAATAT
75936472 ATAAATATAAA-T-AAATAATAT
1 ATAAA-ATAAATTAAAATAATAT
75936493 AT
1 AT
75936495 TGTTAGCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 10 0.48
22 6 0.29
23 5 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
ATAAAATAAATTAAAATAATAT
Found at i:75937909 original size:14 final size:14
Alignment explanation
Indices: 75937869--75937914 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
75937859 AACAATTTTT
*
75937869 TAATATAAATTTAA
1 TAATAAAAATTTAA
*
75937883 TATTTATAAAATTTAA
1 TA-ATA-AAAATTTAA
75937899 TAATAAAAATTTAA
1 TAATAAAAATTTAA
75937913 TA
1 TA
75937915 CTTAATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 13 0.48
15 4 0.15
16 10 0.37
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATAAAAATTTAA
Found at i:75949086 original size:12 final size:12
Alignment explanation
Indices: 75949069--75949103 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
75949059 CCGGTCCGCC
75949069 TATATTAATTTT
1 TATATTAATTTT
*
75949081 TATATTATTTTT
1 TATATTAATTTT
75949093 TATA-TAATTTT
1 TATATTAATTTT
75949104 AAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:75949258 original size:30 final size:29
Alignment explanation
Indices: 75949224--75949287 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
75949214 TAACTTAATA
75949224 AACAAATGTT-TCTAAAATAATAACAAAATT
1 AACAAAT-TTCTCTAAAATAATAA-AAAATT
*
75949254 AACAAATTTCTTTAAAATAATAAAAAATT
1 AACAAATTTCTCTAAAATAATAAAAAATT
75949283 AACAA
1 AACAA
75949288 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (29 bp):
AACAAATTTCTCTAAAATAATAAAAAATT
Found at i:75949331 original size:14 final size:14
Alignment explanation
Indices: 75949312--75949394 Score: 57
Period size: 14 Copynumber: 5.9 Consensus size: 14
75949302 TACAATATCT
*
75949312 AAATAATAACAATA
1 AAATAATAAAAATA
75949326 AAATAATAAAAATA
1 AAATAATAAAAATA
*
75949340 TAATAGCA-AAATAATA
1 AAATA--ATAAA-AATA
75949356 ACAA-AATAAATAAT-
1 A-AATAATAAA-AATA
75949370 AAATAATAAAAA-A
1 AAATAATAAAAATA
* *
75949383 TAATATTAAAAA
1 AAATAATAAAAA
75949395 AATTATCATG
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
13 14 0.25
14 25 0.44
15 10 0.18
16 6 0.11
17 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (14 bp):
AAATAATAAAAATA
Found at i:75949342 original size:22 final size:21
Alignment explanation
Indices: 75949311--75949393 Score: 87
Period size: 22 Copynumber: 3.9 Consensus size: 21
75949301 ATACAATATC
* *
75949311 TAAATAATAACAATAAAATAA
1 TAAAAAATAATAATAAAATAA
**
75949332 TAAAAATATAATAGCAAAATAA
1 TAAAAA-ATAATAATAAAATAA
75949354 TAACAAAATAAATAAT-AAATAA
1 TAA-AAAAT-AATAATAAAATAA
*
75949376 TAAAAAATAATATTAAAA
1 TAAAAAATAATAATAAAA
75949394 AAATTATCAT
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
20 5 0.10
21 13 0.25
22 26 0.51
23 7 0.14
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (21 bp):
TAAAAAATAATAATAAAATAA
Found at i:75949393 original size:11 final size:10
Alignment explanation
Indices: 75949311--75949387 Score: 73
Period size: 11 Copynumber: 7.2 Consensus size: 10
75949301 ATACAATATC
*
75949311 TAAATAATAA
1 TAAAAAATAA
*
75949321 CAATAAAATAA
1 TAA-AAAATAA
75949332 TAAAAATATAA
1 TAAAAA-ATAA
*
75949343 TAGCAAAATAA
1 TA-AAAAATAA
75949354 TAACAAAATAAA
1 TAA-AAAAT-AA
*
75949366 TAATAAATAA
1 TAAAAAATAA
75949376 TAAAAAATAA
1 TAAAAAATAA
75949386 TA
1 TA
75949388 TTAAAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
10 18 0.33
11 29 0.53
12 8 0.15
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.23
Consensus pattern (10 bp):
TAAAAAATAA
Found at i:75953262 original size:13 final size:14
Alignment explanation
Indices: 75953240--75953277 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
75953230 CTAAATTCTA
*
75953240 AATCCTAAATCTTG
1 AATCCTAAATCTCG
75953254 AAT-CTAAATCTCG
1 AATCCTAAATCTCG
75953267 AATCCTAAATC
1 AATCCTAAATC
75953278 CAAAACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (14 bp):
AATCCTAAATCTCG
Found at i:75961242 original size:3 final size:3
Alignment explanation
Indices: 75961234--75961274 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
75961224 TAAAAGCTAA
75961234 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
75961275 AGGAAACAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:75962038 original size:20 final size:21
Alignment explanation
Indices: 75962009--75962048 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
75961999 TTTCCGTGTA
75962009 TTTTTAATTTTATAAATTTAG
1 TTTTTAATTTTATAAATTTAG
75962030 TTTTT-ATTTTATAAATTTA
1 TTTTTAATTTTATAAATTTA
75962049 AAAATTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTTAATTTTATAAATTTAG
Found at i:75962846 original size:7 final size:7
Alignment explanation
Indices: 75962834--75962865 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
75962824 TATAAAAATA
75962834 TTTATTT
1 TTTATTT
75962841 TTTATTT
1 TTTATTT
75962848 TTTATTT
1 TTTATTT
75962855 TTTATTT
1 TTTATTT
75962862 TTTA
1 TTTA
75962866 AGATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:75965579 original size:31 final size:31
Alignment explanation
Indices: 75965511--75965582 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
75965501 AATTTGACCC
* *
75965511 AATTTAGTTCTTGTATTTTTCAAATTGGTTA
1 AATTTAGTCCTTGTATTTTTCAAATTGGTAA
* * *
75965542 ATTTTAGTCCTTGTACTTTTTGAAATTTG-AA
1 AATTTAGTCCTTGTA-TTTTTCAAATTGGTAA
75965573 AATTTAGTCC
1 AATTTAGTCC
75965583 CGACCTAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 23 0.68
32 11 0.32
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.51
Consensus pattern (31 bp):
AATTTAGTCCTTGTATTTTTCAAATTGGTAA
Found at i:75966144 original size:20 final size:17
Alignment explanation
Indices: 75966119--75966161 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
75966109 CAAACTACAA
75966119 ATTAATATAAAGATAATAAT
1 ATTAATA-AAAG-T-ATAAT
*
75966139 ATTAATAAAAGTTTAAT
1 ATTAATAAAAGTATAAT
75966156 ATTAAT
1 ATTAAT
75966162 GAAACCATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 1 0.05
19 4 0.18
20 7 0.32
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
ATTAATAAAAGTATAAT
Found at i:75970061 original size:17 final size:19
Alignment explanation
Indices: 75970039--75970073 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
75970029 GATATGATAC
75970039 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
75970056 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
75970074 ATCCGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:75970363 original size:22 final size:21
Alignment explanation
Indices: 75970328--75970410 Score: 68
Period size: 18 Copynumber: 4.1 Consensus size: 21
75970318 AAAAGGTATC
* *
75970328 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
75970349 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
75970372 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
75970391 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
75970409 TA
1 TA
75970411 TATTTCCATA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
18 15 0.28
19 11 0.20
21 3 0.06
22 15 0.28
23 10 0.19
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:75970371 original size:23 final size:22
Alignment explanation
Indices: 75970328--75970385 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
75970318 AAAAGGTATC
* *
75970328 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
75970349 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
75970372 TGCATATCATATCT
1 TACAAATCATATCT
75970386 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:75970400 original size:18 final size:19
Alignment explanation
Indices: 75970364--75970409 Score: 85
Period size: 18 Copynumber: 2.5 Consensus size: 19
75970354 AATCATATCT
75970364 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
75970383 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
75970401 TCTAAGATT
1 TCTAAGATT
75970410 ATATTTCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:75970812 original size:45 final size:45
Alignment explanation
Indices: 75970756--75971023 Score: 256
Period size: 45 Copynumber: 5.9 Consensus size: 45
75970746 CGATATCTAC
* * *
75970756 TATCTTTGATCTGCTCCTCGTCTAATACAGAGAGGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * * * *
75970801 TATCTTCGATCTGCTCCCCGTCTAATACAAATACGCCAAATTTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* ***
75970846 T-TCTTCAATCTGCTTATCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* *
75970890 TATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * *** * * *
75970935 CATCTTGGATCTGCTTCTATGT-AAACACATGAAGAT--CAGATCTGCT
1 TATCTTCGATCTGC-TCCCCGTCTAATACA-G-AGATGCCAAATCTG-T
*
75970981 ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
75971024 ATCTTGGATC
Statistics
Matches: 173, Mismatches: 41, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
44 35 0.20
45 102 0.59
46 11 0.06
47 25 0.14
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
Done.