Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 230 of 320
Found at i:76236050 original size:19 final size:19
Alignment explanation
Indices: 76236026--76236065 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
76236016 AGCTCCCATG
76236026 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
**
76236045 TAGCTCCGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
76236064 TA
1 TA
76236066 TTAGCTCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.38, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:76242812 original size:24 final size:25
Alignment explanation
Indices: 76242777--76242827 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
76242767 ATACATGTTC
76242777 ATAATATATAAAACATACACATAAT
1 ATAATATATAAAACATACACATAAT
**
76242802 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
76242826 AT
1 AT
76242828 GTACACACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:76242932 original size:21 final size:20
Alignment explanation
Indices: 76242900--76242938 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
76242890 AAGATATACT
*
76242900 TATATAATATATATTAAAGA
1 TATATAATATATAATAAAGA
76242920 TATATACATATATAATAAA
1 TATATA-ATATATAATAAA
76242939 TACATGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (20 bp):
TATATAATATATAATAAAGA
Found at i:76245401 original size:54 final size:54
Alignment explanation
Indices: 76245321--76245554 Score: 396
Period size: 54 Copynumber: 4.3 Consensus size: 54
76245311 GAAAAGTAGA
* *
76245321 TTTTGAAAAACAAAAATTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
76245375 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
76245429 TTTTGAAAAATAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
76245483 TTTTGAAAAACAGAAGTTAAAATGCTCAACTCACCTCTCGCAATATGAGTCGAT
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
**
76245537 TTTTGGCAAACAGAAATT
1 TTTTGAAAAACAGAAATT
76245555 GAAATTACCT
Statistics
Matches: 170, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 170 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (54 bp):
TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
Found at i:76245635 original size:14 final size:15
Alignment explanation
Indices: 76245616--76245647 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
76245606 TGAATTTTTG
76245616 AAAAACAGAAATT-A
1 AAAAACAGAAATTGA
76245630 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
76245645 AAA
1 AAA
76245648 TACCTTAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.72, C:0.06, G:0.09, T:0.12
Consensus pattern (15 bp):
AAAAACAGAAATTGA
Found at i:76245693 original size:88 final size:88
Alignment explanation
Indices: 76245544--76245808 Score: 433
Period size: 88 Copynumber: 3.0 Consensus size: 88
76245534 GATTTTTGGC
* *
76245544 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
76245609 ATTTTTGAAAAACAGAAATTAAA
66 ATTTTTGAAAAACAGAAATTAAA
*
76245632 AAACAGAAATTGAAAATACCTTAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
76245697 CTTTTTGAAGAGCAGAAATTGAA
66 ATTTTTGAAAAACAGAAATTAAA
* *
76245720 AAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTG-
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
76245784 ATTTTTGAAAAAACAGAAATTAAA
66 ATTTTTG-AAAAACAGAAATTAAA
76245808 A
1 A
76245809 GGCTCAACTC
Statistics
Matches: 162, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
87 6 0.04
88 156 0.96
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (88 bp):
AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
ATTTTTGAAAAACAGAAATTAAA
Found at i:76245726 original size:14 final size:14
Alignment explanation
Indices: 76245709--76245735 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76245699 TTTTGAAGAG
76245709 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
76245723 CAGAAATTGAAAA
1 CAGAAATTGAAAA
76245736 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:76245887 original size:215 final size:215
Alignment explanation
Indices: 76245636--76246023 Score: 674
Period size: 215 Copynumber: 1.8 Consensus size: 215
76245626 ATTAAAAAAC
* *
76245636 AGAAATTGAAAATACCTTAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAC-TT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGACTTT
*
76245700 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTC
66 TTTGAAAAGCAGAAATTGAAAAACA-AAATTGAAAATACCTCAGCGTGACC-TGAGGCTCAACTC
76245764 ACCTCTCACAATATGAGTTGATTTTTGAAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGC
129 ACCTCTCACAATATGAGTTGATTTTTG-AAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGC
76245828 AATATGAGTCGATTTTGGCAAAT
193 AATATGAGTCGATTTTGGCAAAT
* *
76245851 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGACTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGACTTT
76245916 TTTGAAAAGCAGAAATTGAAAAACAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
66 TTTGAAAAGCAGAAATTGAAAAACAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
*
76245981 CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
131 CTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
76246024 TACCTCAGCG
Statistics
Matches: 164, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
214 13 0.08
215 123 0.75
216 28 0.17
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (215 bp):
AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGACTTT
TTTGAAAAGCAGAAATTGAAAAACAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
CTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCGCAAT
ATGAGTCGATTTTGGCAAAT
Found at i:76245946 original size:13 final size:14
Alignment explanation
Indices: 76245917--76245950 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
76245907 GTTGACTTTT
*
76245917 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
76245931 TTGAAAAACA-AAA
1 TTGAAAAACAGAAA
76245944 TTGAAAA
1 TTGAAAA
76245951 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.62, C:0.06, G:0.15, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:76246053 original size:73 final size:73
Alignment explanation
Indices: 76245931--76246089 Score: 286
Period size: 73 Copynumber: 2.2 Consensus size: 73
76245921 AAAGCAGAAA
76245931 TTGAAAAACA-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
76245995 GTTGATTT
66 GTTGATTT
* *
76246003 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
76246068 GTTGATTT
66 GTTGATTT
76246076 TTG-AAAACAGAAAT
1 TTGAAAAACAGAAAT
76246090 AAAAACATCA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
72 21 0.25
73 63 0.75
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:76246072 original size:161 final size:155
Alignment explanation
Indices: 76245808--76246096 Score: 452
Period size: 161 Copynumber: 1.8 Consensus size: 155
76245798 AGAAATTAAA
** * *
76245808 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTGGCAAATAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTGAAAAACAGAAATTGAAAATACCTCAGCG
*
76245873 TGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGACTTTTTTGAAAAGCAGAAATTGAAAA
66 TGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAA-CAGAAA-T-AAAA
76245938 ACAAAATTGAAAATACCTCAGCGTGACCTG
126 ACAAAATTGAAAATACCTCAGCGTGACCTG
*
76245968 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTGAAAAACAGAAATTGAAAATACCTCAGC
* *
76246033 GTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATAAAAACA
65 GTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAAATAAAAACA
76246097 TCAAAATACC
Statistics
Matches: 120, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
156 7 0.06
157 1 0.01
158 6 0.05
159 10 0.08
160 31 0.26
161 65 0.54
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (155 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTGAAAAACAGAAATTGAAAATACCTCAGCG
TGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAAATAAAAACAAA
ATTGAAAATACCTCAGCGTGACCTG
Found at i:76246954 original size:8 final size:8
Alignment explanation
Indices: 76246941--76246978 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
76246931 TTGATCCCCC
76246941 TTTTTCTT
1 TTTTTCTT
76246949 TTTTTC-T
1 TTTTTCTT
76246956 TTTTTCTT
1 TTTTTCTT
76246964 TTTCTCTCTT
1 TTT-T-TCTT
76246974 TTTTT
1 TTTTT
76246979 TAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 7 0.26
8 11 0.41
9 2 0.07
10 7 0.26
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:76246961 original size:15 final size:17
Alignment explanation
Indices: 76246941--76246977 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
76246931 TTGATCCCCC
76246941 TTTTTCTTTTT-T-TCT
1 TTTTTCTTTTTCTCTCT
76246956 TTTTTCTTTTTCTCTCT
1 TTTTTCTTTTTCTCTCT
76246973 TTTTT
1 TTTTT
76246978 TTAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.55
16 1 0.05
17 8 0.40
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTCTTTTTCTCTCT
Found at i:76258603 original size:24 final size:25
Alignment explanation
Indices: 76258568--76258618 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
76258558 ATACATGTTC
76258568 ATAATATATAAAACATACACATAAT
1 ATAATATATAAAACATACACATAAT
**
76258593 ATAATAT-TAAAACATTTACATAAT
1 ATAATATATAAAACATACACATAAT
76258617 AT
1 AT
76258619 GTACACACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATATATAAAACATACACATAAT
Found at i:76258715 original size:21 final size:21
Alignment explanation
Indices: 76258691--76258730 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76258681 AAGATATACT
*
76258691 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
76258712 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
76258731 ATACATGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:76260643 original size:24 final size:24
Alignment explanation
Indices: 76260610--76260670 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
76260600 TGCGGTTTGC
76260610 AATTGAAATTGATTG-ATTTAGTATGT
1 AATTG-AATTGATTGAATTTA-TAT-T
* *
76260636 GA-TGAATTTATTGAATTTATATT
1 AATTGAATTGATTGAATTTATATT
76260659 AATTGAATTGAT
1 AATTGAATTGAT
76260671 ATATATATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 2 0.07
24 19 0.66
25 7 0.24
26 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (24 bp):
AATTGAATTGATTGAATTTATATT
Found at i:76260665 original size:15 final size:16
Alignment explanation
Indices: 76260644--76260690 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
76260634 GTGATGAATT
76260644 TATTGAATTTATATTA
1 TATTGAATTTATATTA
*
76260660 -ATTGAATTGATATATA
1 TATTGAATTTATAT-TA
*
76260676 TATTGAATATATATT
1 TATTGAATTTATATT
76260691 GATTATTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 12 0.46
16 3 0.12
17 11 0.42
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (16 bp):
TATTGAATTTATATTA
Found at i:76260680 original size:17 final size:16
Alignment explanation
Indices: 76260644--76260705 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 16
76260634 GTGATGAATT
*
76260644 TATTGAATTTATATTA
1 TATTGAATTGATATTA
76260660 -ATTGAATTGATATATA
1 TATTGAATTGATAT-TA
76260676 TATTGAATAT-ATATTGA
1 TATTGAAT-TGATATT-A
76260693 TTATTTGAATTGA
1 -TA-TTGAATTGA
76260706 ATTGAATATT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 12 0.32
16 3 0.08
17 12 0.32
18 4 0.11
19 7 0.18
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (16 bp):
TATTGAATTGATATTA
Found at i:76260687 original size:11 final size:11
Alignment explanation
Indices: 76260644--76260692 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
76260634 GTGATGAATT
*
76260644 TATTGAATTTA
1 TATTGAATATA
76260655 TATT-AAT-TGA
1 TATTGAATAT-A
76260665 -ATTGATATATA
1 TATTGA-ATATA
76260676 TATTGAATATA
1 TATTGAATATA
76260687 TATTGA
1 TATTGA
76260693 TTATTTGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
9 4 0.12
10 5 0.15
11 18 0.55
12 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (11 bp):
TATTGAATATA
Found at i:76260687 original size:13 final size:12
Alignment explanation
Indices: 76260665--76260693 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
76260655 TATTAATTGA
76260665 ATTGATATATAT
1 ATTGATATATAT
76260677 ATTGA-ATATAT
1 ATTGATATATAT
76260688 ATTGAT
1 ATTGAT
76260694 TATTTGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
ATTGATATATAT
Found at i:76263559 original size:30 final size:30
Alignment explanation
Indices: 76263525--76263581 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
76263515 CCAAAATTTT
* *
76263525 ACAATTTTCTTTGAAAATTTTAATTAACCC
1 ACAATTTTCTTTAAAAAGTTTAATTAACCC
* *
76263555 ACAATTTTTTTTAAAAAGTTTCATTAA
1 ACAATTTTCTTTAAAAAGTTTAATTAA
76263582 ACCTTTCTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.46
Consensus pattern (30 bp):
ACAATTTTCTTTAAAAAGTTTAATTAACCC
Found at i:76264372 original size:27 final size:26
Alignment explanation
Indices: 76264314--76264373 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
76264304 GCTATTAAAC
** **
76264314 TTAATATATATGAATATTTGTATGTA
1 TTAATATATATGAATATTTAAAAATA
76264340 TATAATATATATGAATATTTAAAAAATA
1 T-TAATATATATGAATATTT-AAAAATA
76264368 TTAATA
1 TTAATA
76264374 AATCTAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.04
27 23 0.82
28 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (26 bp):
TTAATATATATGAATATTTAAAAATA
Found at i:76267093 original size:11 final size:11
Alignment explanation
Indices: 76267079--76267123 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
76267069 AGATAAATAT
76267079 TATTTTATTAA
1 TATTTTATTAA
*
76267090 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
76267103 TATTTTACTAA
1 TATTTTATTAA
76267114 TATTTTATTA
1 TATTTTATTA
76267124 TAAATAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 16 0.57
12 5 0.18
13 7 0.25
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:76273109 original size:52 final size:49
Alignment explanation
Indices: 76273047--76273207 Score: 152
Period size: 46 Copynumber: 3.3 Consensus size: 49
76273037 TGTGATTTCC
76273047 GTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGCTACT
1 GTATAAGACCATAGCTGGGCTATGGCTTC-GAG--ATGTGATATGTGCTACT
* * * * * *
76273099 GTATAAGACCATATCTGGGATATGGCATC-AG-TGTGATACGTGAT-CC
1 GTATAAGACCATAGCTGGGCTATGGCTTCGAGATGTGATATGTGCTACT
* *
76273145 GTGTAAGACCATGGCTGGGCTATGGCTTCG-GTATGTGATATGTGACTA-T
1 GTATAAGACCATAGCTGGGCTATGGCTTCGAG-ATGTGATATGTG-CTACT
**
76273194 GTGCAAGACCATAG
1 GTATAAGACCATAG
76273208 TTTTACTATG
Statistics
Matches: 88, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
46 26 0.30
47 11 0.12
48 10 0.11
49 13 0.15
50 2 0.02
52 26 0.30
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (49 bp):
GTATAAGACCATAGCTGGGCTATGGCTTCGAGATGTGATATGTGCTACT
Found at i:76280000 original size:3 final size:3
Alignment explanation
Indices: 76279992--76280041 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
76279982 TAAACTAAAC
76279992 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
76280040 AT
1 AT
76280042 AGGTAATAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:76280400 original size:15 final size:15
Alignment explanation
Indices: 76280382--76280431 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
76280372 GAATATTTAA
76280382 TTTGATTTTATGAAT
1 TTTGATTTTATGAAT
76280397 TTTGATATATT-T-AA-
1 TTTGAT-T-TTATGAAT
76280411 TTTGATTTTATGAAT
1 TTTGATTTTATGAAT
76280426 TTTGAT
1 TTTGAT
76280432 ATGATAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 2 0.07
13 2 0.07
14 8 0.27
15 14 0.47
16 2 0.07
17 2 0.07
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTGATTTTATGAAT
Found at i:76280409 original size:29 final size:29
Alignment explanation
Indices: 76280374--76280433 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
76280364 GATTTTGTGA
76280374 ATATTTAATTTGATTTTATGAATTTTGAT
1 ATATTTAATTTGATTTTATGAATTTTGAT
76280403 ATATTTAATTTGATTTTATGAATTTTGAT
1 ATATTTAATTTGATTTTATGAATTTTGAT
76280432 AT
1 AT
76280434 GATAAATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (29 bp):
ATATTTAATTTGATTTTATGAATTTTGAT
Found at i:76280426 original size:14 final size:14
Alignment explanation
Indices: 76280380--76280427 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
76280370 GTGAATATTT
76280380 AATTTGATTTTATG
1 AATTTGATTTTATG
76280394 AATTTTGATATATT-T-
1 AA-TTTGAT-T-TTATG
76280409 AATTTGATTTTATG
1 AATTTGATTTTATG
76280423 AATTT
1 AATTT
76280428 TGATATGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 2 0.07
13 2 0.07
14 13 0.45
15 8 0.28
16 2 0.07
17 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.58
Consensus pattern (14 bp):
AATTTGATTTTATG
Found at i:76281908 original size:19 final size:19
Alignment explanation
Indices: 76281884--76281921 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
76281874 TATGCGGTAA
76281884 GATGCACTTCATGTGCCAG
1 GATGCACTTCATGTGCCAG
*
76281903 GATGCACTTCATGTTCCAG
1 GATGCACTTCATGTGCCAG
76281922 TATACGCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (19 bp):
GATGCACTTCATGTGCCAG
Found at i:76282302 original size:18 final size:18
Alignment explanation
Indices: 76282279--76282316 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
76282269 AAGGTAAGTG
76282279 AACTGAATTGATCATGCA
1 AACTGAATTGATCATGCA
*
76282297 AACTGAATTGGTCATGCA
1 AACTGAATTGATCATGCA
76282315 AA
1 AA
76282317 TTTGATGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (18 bp):
AACTGAATTGATCATGCA
Found at i:76287390 original size:43 final size:42
Alignment explanation
Indices: 76287323--76287486 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 42
76287313 TACCATACCA
* * * * *
76287323 ATGCCATATCCTAGATATAGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* * *
76287365 ATGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
76287408 ATGCCATATCCTAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
76287450 ATGCCATATCCCAGATATGGTCTTACAC-ATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCA
76287487 GTAACCCTAA
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 71 0.68
43 32 0.30
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:76287453 original size:85 final size:84
Alignment explanation
Indices: 76287323--76287486 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 84
76287313 TACCATACCA
* * * *
76287323 ATGCCATATCCTAGATATAGTCTTACATGGGATCTCGTATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCTAGATATAGTCTTACACGAGATCTCATATCGATGCC-ATAGCCCAGATATGGTC
76287388 TTACACAAAGTCTCATATCG
65 TTACACAAAGTCTCATATCG
* * *
76287408 ATGCCATATCCTAGATATGGTCTTACACGA-AGTCTCATATTGATGCCATATCCCAGATATGGTC
1 ATGCCATATCCTAGATATAGTCTTACACGAGA-TCTCATATCGATGCCATAGCCCAGATATGGTC
*
76287472 TTACACATAGTCTCA
65 TTACACAAAGTCTCA
76287487 GTAACCCTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 30 0.43
85 40 0.57
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCTAGATATAGTCTTACACGAGATCTCATATCGATGCCATAGCCCAGATATGGTCT
TACACAAAGTCTCATATCG
Found at i:76289538 original size:19 final size:20
Alignment explanation
Indices: 76289511--76289558 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
76289501 GTTGGTAAAT
*
76289511 ACATGTGTA-ATAATAATAA
1 ACATATGTATATAATAATAA
*
76289530 ACATATGTATTTAATAATAA
1 ACATATGTATATAATAATAA
76289550 A-ATATGTAT
1 ACATATGTAT
76289559 TGCTTATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (20 bp):
ACATATGTATATAATAATAA
Found at i:76289559 original size:19 final size:20
Alignment explanation
Indices: 76289521--76289559 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
76289511 ACATGTGTAA
76289521 TAATAATAAACATATGTATT
1 TAATAATAAACATATGTATT
76289541 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
76289560 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:76289703 original size:16 final size:15
Alignment explanation
Indices: 76289678--76289709 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
76289668 AAAACAGGGG
76289678 AAAAAGAAAGAAAGA
1 AAAAAGAAAGAAAGA
76289693 AAAAGAGAAAGAAAGA
1 AAAA-AGAAAGAAAGA
76289709 A
1 A
76289710 GGAGAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAGA
Found at i:76290439 original size:11 final size:11
Alignment explanation
Indices: 76290423--76290447 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76290413 AATTGGTATA
76290423 TATATATTGAT
1 TATATATTGAT
76290434 TATATATTGAT
1 TATATATTGAT
76290445 TAT
1 TAT
76290448 TTGAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
TATATATTGAT
Found at i:76290700 original size:40 final size:40
Alignment explanation
Indices: 76290578--76290716 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
76290568 ACTTCGAGTC
*
76290578 GATGAGACACTGGGTGTCAATTTATTACTTCGGATTAAT-T
1 GATGAGACACTGGGTGTCAAATTATTACTTCGGATT-ATCT
* * * * *
76290618 CGATGAGGCACTGGGTG-CCAA-T-TTACTTCGGTTTAGCC
1 -GATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCT
* *
76290656 GATGAGACACTAGGTGTCAAATTATTACTTCGAATTATCT
1 GATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCT
* *
76290696 GATGAGGCACTGGGTGCCAAA
1 GATGAGACACTGGGTGTCAAA
76290717 CTGGTGTGTT
Statistics
Matches: 78, Mismatches: 16, Indels: 9
0.76 0.16 0.09
Matches are distributed among these distances:
37 15 0.19
38 14 0.18
39 2 0.03
40 32 0.41
41 15 0.19
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAAATTATTACTTCGGATTATCT
Found at i:76292897 original size:35 final size:35
Alignment explanation
Indices: 76292851--76292918 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
76292841 GTACTAGAAG
*
76292851 ATATGTTGCGAGCCTGTATTGTTAATCTCGAAGCT
1 ATATGTTGCGAGCCTGTATAGTTAATCTCGAAGCT
76292886 ATATGTTGCGAGCCTGTATAGTTAATCTCGAAG
1 ATATGTTGCGAGCCTGTATAGTTAATCTCGAAG
76292919 TTAGCTGGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (35 bp):
ATATGTTGCGAGCCTGTATAGTTAATCTCGAAGCT
Found at i:76293857 original size:47 final size:46
Alignment explanation
Indices: 76293770--76293860 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 46
76293760 TTTCAGCCCA
*
76293770 GCTATTTAGTTTGTAGGCCCATTTTATGTTTTATTTTGATTTTGGG
1 GCTATTTAGTTTGTAGGCCCATTTTACGTTTTATTTTGATTTTGGG
76293816 GCTATTTAGTTTGT-GGACCTACA-TTTACGTTTTATTTTGATTTTG
1 GCTATTTAGTTTGTAGG-CC--CATTTTACGTTTTATTTTGATTTTG
76293861 AGCAGATTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
45 2 0.05
46 16 0.39
47 21 0.51
48 2 0.05
ACGTcount: A:0.16, C:0.10, G:0.20, T:0.54
Consensus pattern (46 bp):
GCTATTTAGTTTGTAGGCCCATTTTACGTTTTATTTTGATTTTGGG
Found at i:76297490 original size:18 final size:18
Alignment explanation
Indices: 76297455--76297492 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
76297445 AACCGACCGA
*
76297455 TTAACCGAATTCGATCGG
1 TTAACCGAATTCAATCGG
76297473 TTAACCGAATT-AATTCGG
1 TTAACCGAATTCAA-TCGG
76297491 TT
1 TT
76297493 TTACCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (18 bp):
TTAACCGAATTCAATCGG
Found at i:76301019 original size:13 final size:15
Alignment explanation
Indices: 76300988--76301065 Score: 60
Period size: 15 Copynumber: 5.4 Consensus size: 15
76300978 TTAGGAAACG
76300988 TACATAAAAAATATA
1 TACATAAAAAATATA
76301003 TACATAAAAAAT-T-
1 TACATAAAAAATATA
76301016 TACA-AAAATAATATA
1 TACATAAAA-AATATA
* * *
76301031 -AAAT-AATAATATG
1 TACATAAAAAATATA
76301044 TACA-AAAATATATATA
1 TACATAAAA-A-ATATA
76301060 TACATA
1 TACATA
76301066 TATATACATA
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
12 4 0.08
13 12 0.25
14 10 0.21
15 13 0.27
16 8 0.17
17 1 0.02
ACGTcount: A:0.63, C:0.06, G:0.01, T:0.29
Consensus pattern (15 bp):
TACATAAAAAATATA
Found at i:76301019 original size:28 final size:29
Alignment explanation
Indices: 76300987--76301088 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 29
76300977 ATTAGGAAAC
76300987 GTACATAAAA-AATATATACATAA-AAAAT
1 GTACA-AAAATAATATATACATAATAAAAT
* * *
76301015 TTACAAAAATAATATA-AAATAATAATAT
1 GTACAAAAATAATATATACATAATAAAAT
76301043 GTACAAAAATATATATATACATATATATACATAT
1 GTACAAAAATA-ATATATACATA-ATA-A-A-AT
76301077 GTACATAAAATA
1 GTACA-AAAATA
76301089 TACACTAATA
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
27 9 0.15
28 24 0.41
29 5 0.08
30 4 0.07
31 3 0.05
32 1 0.02
34 7 0.12
35 6 0.10
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (29 bp):
GTACAAAAATAATATATACATAATAAAAT
Found at i:76301053 original size:18 final size:17
Alignment explanation
Indices: 76301030--76301090 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 17
76301020 AAAATAATAT
76301030 AAAATAATAATATGTACA
1 AAAAT-ATAATATGTACA
*
76301048 AAAATAT-ATATATACA
1 AAAATATAATATGTACA
* *
76301064 TATATATACATATGTACA
1 AAAATATA-ATATGTACA
76301082 TAAAATATA
1 -AAAATATA
76301091 CACTAATATA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 13 0.38
17 2 0.06
18 13 0.38
19 6 0.18
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (17 bp):
AAAATATAATATGTACA
Found at i:76301225 original size:33 final size:33
Alignment explanation
Indices: 76301163--76301225 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
76301153 ACACAATATG
* * *
76301163 GTATTTAAAATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATAAGTAAATATAATA
76301196 GTATTTAAGAATATATACATAAG-AAATATA
1 GTATTTAA-AATATATACATAAGTAAATATA
76301226 TAACTAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (33 bp):
GTATTTAAAATATATACATAAGTAAATATAATA
Found at i:76301465 original size:10 final size:10
Alignment explanation
Indices: 76301433--76301497 Score: 58
Period size: 10 Copynumber: 6.0 Consensus size: 10
76301423 ATATATAAAG
76301433 AAAGAAAAAA
1 AAAGAAAAAA
*
76301443 AAACAACACAAAA
1 AAA-GA-A-AAAA
76301456 AAAGAAAAAA
1 AAAGAAAAAA
76301466 AAAGAGGAAAAA
1 AAAGA--AAAAA
**
76301478 AAAGAGGAAA
1 AAAGAAAAAA
76301488 AAAGAAAAAA
1 AAAGAAAAAA
76301498 GATGCAACCT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
10 23 0.52
11 2 0.05
12 12 0.27
13 7 0.16
ACGTcount: A:0.82, C:0.05, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:76301477 original size:22 final size:23
Alignment explanation
Indices: 76301433--76301493 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
76301423 ATATATAAAG
*
76301433 AAAGAAAAAAAAACAACACAAAA
1 AAAGAAAAAAAAAGAACACAAAA
**
76301456 AAAGAAAAAAAAAGAGGA-AAAA
1 AAAGAAAAAAAAAGAACACAAAA
**
76301478 AAAGAGGAAAAAAGAA
1 AAAGAAAAAAAAAGAA
76301494 AAAAGATGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 17 0.53
23 15 0.47
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (23 bp):
AAAGAAAAAAAAAGAACACAAAA
Found at i:76302520 original size:91 final size:91
Alignment explanation
Indices: 76302417--76302774 Score: 242
Period size: 91 Copynumber: 4.0 Consensus size: 91
76302407 ATAGACAATA
* *
76302417 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCGCAATACGAG
76302481 TCGATTTTTTTGAAAGGCAAAAATTGG
65 TCGATTTTTTTGAAAGGCAAAAATTGG
* * * ** *
76302508 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTTTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAGT
* * ***** *
76302573 TGATTTTTTT--TA---TTTTTTTTG
66 CGATTTTTTTGAAAGGCAAAAATTGG
* * * * *
76302594 ACAACAGAAATT-AAAATTACCTCA--GCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAA-TACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
* *** * *
76302656 TTGAATTTTTTTGAAAAATATAAATT-T
65 TCG-ATTTTTTTGAAAGGCAAAAATTGG
* * * * * * *
76302683 AAAAGCAGAAATTGAAATTAACTCA--ACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGA
1 AAAA-CAGAAATTGAAAATACCTCAGCGCGTGACC-TAAGGCTCAACTCACCTCTCGCAATACGA
* *
76302745 GTTGA-TTTTTTGAAAGACAAAAATT-G
64 GTCGATTTTTTTGAAAGGCAAAAATTGG
76302771 AAAA
1 AAAA
76302775 TACCTCAGCA
Statistics
Matches: 214, Mismatches: 42, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
84 34 0.16
85 12 0.06
86 20 0.09
87 1 0.00
88 21 0.10
89 7 0.03
90 53 0.25
91 66 0.31
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (91 bp):
AAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAGT
CGATTTTTTTGAAAGGCAAAAATTGG
Found at i:76302733 original size:90 final size:88
Alignment explanation
Indices: 76302453--76302759 Score: 243
Period size: 90 Copynumber: 3.5 Consensus size: 88
76302443 GCGTGAGCCA
* *** * *
76302453 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAAAAATTGGAAAA-CAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATATAAATT-TAAAAGCAGAA
* ** *
76302517 ATTGAAAA-TACCTCGGCGTGTGACCTG
64 ATT-AAAATTAACTCAACATGT--CCTG
** * * ** *** *
76302544 AGGCTCAACTCGTCTTTCGCAATACGAGTTGATTTTTT---TTAT-TTTTTTTGACAA-CAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTT-AAAAGCAGAAA
* *
76302604 TTAAAATTACCTCAGCATGTCCTG
65 TTAAAATTAACTCAACATGTCCTG
76302628 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTGAAAAATATAAATTTAAAAGCAGAA
* *
76302693 ATTGAAATTAACTCAACGTG-CCTTG
64 ATTAAAATTAACTCAACATGTCC-TG
* *
76302718 AGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
76302760 GACAAAAATT
Statistics
Matches: 173, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
84 31 0.18
85 5 0.03
86 30 0.17
88 10 0.06
89 8 0.05
90 62 0.36
91 27 0.16
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTTAAAAGCAGAAAT
TAAAATTAACTCAACATGTCCTG
Found at i:76302812 original size:74 final size:73
Alignment explanation
Indices: 76302691--76302905 Score: 277
Period size: 74 Copynumber: 2.9 Consensus size: 73
76302681 TTAAAAGCAG
* * * * *
76302691 AAATTGAAATTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
76302756 GAAAGACAA
66 GAAA-ACAA
* * **
76302765 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* * *
76302830 TTTACAACAG
64 TTGAAAACAA
*
76302840 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
76302905 T
65 T
76302906 TTGAAAAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
74 56 0.46
75 56 0.46
76 9 0.07
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (73 bp):
AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAACAA
Found at i:76303041 original size:74 final size:74
Alignment explanation
Indices: 76302931--76303164 Score: 299
Period size: 74 Copynumber: 3.1 Consensus size: 74
76302921 TGAAAAGCAG
* * * * * **
76302931 AAATTGAAATTACCTAAACCTGCCTTGAGGCTCAACTCACCTCTTACAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
76302995 TGAAAGATAA
66 TGAAA-ATAA
**
76303005 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
76303070 TGACAACAG
66 TGAAAATAA
* *
76303079 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
*
76303144 TTGAAAAATAT
65 TTG-AAAATAA
76303155 AAATTGAAAA
1 AAATTGAAAA
76303165 GCAGAAATTG
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
74 106 0.77
75 18 0.13
76 13 0.09
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAATAA
Found at i:76303251 original size:73 final size:73
Alignment explanation
Indices: 76303158--76303310 Score: 229
Period size: 73 Copynumber: 2.1 Consensus size: 73
76303148 AAAATATAAA
*
76303158 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCACAATATG
76303222 AGTTGATTT
65 AGTTGATTT
* ** *
76303231 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCATAATATG
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATG
76303295 AGTTGATTT
65 AGTTGATTT
76303304 TTGAAAA
1 TTGAAAA
76303311 ATAGATTGAA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
72 3 0.04
73 65 0.89
74 5 0.07
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTT
Found at i:76303385 original size:85 final size:85
Alignment explanation
Indices: 76303242--76303400 Score: 266
Period size: 85 Copynumber: 1.9 Consensus size: 85
76303232 TGACAAACAG
** *
76303242 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCATAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG
76303307 AAAAATAGATTGAAACACAA
66 AAAAATAGATTGAAACACAA
*
76303327 AAATTGACAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
76303391 GAAAAATAGA
65 GAAAAATAGA
76303401 AATTGAAAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
85 67 0.97
86 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (85 bp):
AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG
AAAAATAGATTGAAACACAA
Found at i:76303810 original size:632 final size:626
Alignment explanation
Indices: 76302588--76304964 Score: 2745
Period size: 632 Copynumber: 3.7 Consensus size: 626
76302578 TTTTTTATTT
* * *
76302588 TTTTTGAC-AACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATA
* * * * *
76302652 TGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGA-AATTAACTCAACGTG-CC
66 TGAGTTG-A--TTTTTG-AAAA-ATAGATTGAAAA-CAAAAATTGACAA-TACCTCAGCGTGTCC
* * * *
76302715 TTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
124 -TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCT
* ** * *
76302780 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT---T--TTTACAACAG
187 CAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTACATAAATT-GAACAG
* * * * **
76302840 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
251 AAATTGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTT
* * * * * *
76302905 TTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTAAACCTGCCTTGAGGCTCAACTCA
315 TTTG--------AAA--G---A-CAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA
** ** * *
76302970 CCTCTTACAATATGAGTTGA--TTTTTTGAAAGATAAAAATTGAAAATACCTCAGCGTGTCTTGA
366 TTTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGA
**
76303033 GGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTGACAACAG-AAATTGAAATTACCTC
430 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGACAA-AGAAAATTGAAATTACCTC
76303095 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATT
494 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATT
76303160 GAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
559 GAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
76303225 TGA
624 TGA
** *
76303228 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCATAATA
1 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATA
76303293 TGAGTTGATTTTTGAAAAATAGATTGAAACACAAAAATTGACAATACCTCAGCGTGTCCTGAGGC
66 TGAGTTGATTTTTGAAAAATAGATTGAAA-ACAAAAATTGACAATACCTCAGCGTGTCCTGAGGC
* *
76303358 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGT
76303423 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAAT
195 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----ACATAAATTGAACAGAAAT
* * *
76303488 TGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTTTA
255 TGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGA
76303553 AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
320 AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * **
76303618 A-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGC
385 ATTTTTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
76303682 AATATGAGTTGATTTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
449 AATATGAGTTGATTTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
*
76303747 TCACCTCTTGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATT
514 TCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATT
76303812 ACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
579 ACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** **
76303860 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATA
1 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATA
* * * *
76303925 TGAGTTGATTTTTGAAAAATAGGTTGAAACACAAAAATTGACAATACATCAGCGTGCCCCGAGGC
66 TGAGTTGATTTTTGAAAAATAGATTGAAA-ACAAAAATTGACAATACCTCAGCGTGTCCTGAGGC
* * **
76303990 TCAATTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGT
76304055 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAAT
195 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----ACATAAATTGAACAGAAAT
76304120 TGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGA
255 TGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGA
76304185 AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
320 AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * *
76304250 ATTTTTTTTTGACAAA-GAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTG
385 A-TTTTTTTTGA-AAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
76304314 CAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA-AAAGCAGAAATTGAAATTACCTCAACG
448 CAATATGAGTTG-A--TTTTT------T-T---TTGACAAAG-A-AAATTGAAATTACCTCAGCG
*
76304378 TG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTG----------A---CA
498 TGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAA
* ** *
76304426 AA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGTAATATGAGTTG
562 AAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
76304489 A
626 A
* * * * * *
76304490 TTTTTGAAAAATAGGTTGAAACACAAAAATTGACAA-TACATCAGCGTGCCCCGAGGCTCAATTC
1 TTTTTG------A-----CAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTC
* * *
76304554 ACCTCTCACAAT-TGAGTTGA--TTT------T-GA---AAAACAGAAATTGAAAATACCTCAGT
53 ACCTCTCACAATATGAGTTGATTTTTGAAAAATAGATTGAAAACAAAAATTGACAATACCTCAGC
*
76304606 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAAAACATAAATTGAACAG
118 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--------AAA---AACAG
* * * ** * *
76304671 AAATTGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTTT
172 AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
** * * *
76304736 TTTGAAA--G-ACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAAT
237 CAT-AAATTGAACAGAAATTGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAAT
76304798 ATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA
301 ATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA
* * * *
76304862 TTTCTCGCAATATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
366 TTTCTCGCAATATGAGTTGATTTTTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAG
*
76304927 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTT
431 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
76304965 GAAAAATATA
Statistics
Matches: 1565, Mismatches: 108, Indels: 151
0.86 0.06 0.08
Matches are distributed among these distances:
617 1 0.00
620 1 0.00
621 1 0.00
627 4 0.00
628 60 0.04
629 58 0.04
630 200 0.13
631 82 0.05
632 600 0.38
633 56 0.04
634 13 0.01
635 79 0.05
636 69 0.04
637 9 0.01
638 6 0.00
639 64 0.04
640 9 0.01
641 67 0.04
642 43 0.03
643 13 0.01
644 63 0.04
645 6 0.00
646 8 0.01
647 53 0.03
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (626 bp):
TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATA
TGAGTTGATTTTTGAAAAATAGATTGAAAACAAAAATTGACAATACCTCAGCGTGTCCTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTACATAAATTGAACAGAAATTGAAAC
TACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGAAAGACA
AAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
TTTGAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAA
CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
Found at i:76303883 original size:73 final size:73
Alignment explanation
Indices: 76303790--76303942 Score: 238
Period size: 73 Copynumber: 2.1 Consensus size: 73
76303780 AAAATATAAA
76303790 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
76303854 AGTTGATTT
65 AGTTGATTT
* ** *
76303863 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATG
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
76303927 AGTTGATTT
65 AGTTGATTT
76303936 TTGAAAA
1 TTGAAAA
76303943 ATAGGTTGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
72 3 0.04
73 66 0.89
74 5 0.07
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:76304076 original size:73 final size:73
Alignment explanation
Indices: 76303948--76304962 Score: 572
Period size: 75 Copynumber: 13.0 Consensus size: 73
76303938 GAAAAATAGG
* * * * * * * *
76303948 TTGAAACACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAATTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304013 GTTGATTT
66 GTTGATTT
*
76304021 TTGAAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304086 GTTGATTT
66 GTTGATTT
* * * * **
76304094 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTC
1 TTG--------AAA---AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
76304159 TCGCAATATGAGTTGATTTTTT
55 TCGCAATATGAGTTGA---TTT
* * * * **
76304181 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304246 GTTGATTTTTTT
66 GTTGA----TTT
* * * *
76304258 TTGACAAAGA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304322 GTTGAATTTTT
66 GTTG-A--TTT
* * * ** *** * * * *
76304333 TTGAAAAATATAAATTG-AAA-AGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTG----T-CCT-GA-G-G-C-TCA-ACTCACCTC
*
76304396 ACCTCTCGCAATATGAGTTGATTT
55 T-----CGCAATATGAGTTGATTT
* * ** *
76304420 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304485 GTTGATTT
66 GTTGATTT
* *** * * * * * * *
76304493 TTGAAAAATAGGTTGAAACACAAAAATTGACAATACATC-AG--C-GTGCCCCGAGGCTCAATTC
1 TTGAAAAACA----GAAA-TTGAAAA-T-AC-CT-CAGCGTGTCCTGAGGCTC-A-ACTC-A--C
** *
76304554 ACCTCTCACA-ATTGAGTTGA-TT
52 CTCTCGCA-ATA-TGAGTTGATTT
*
76304576 TTGAAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
76304641 GTTGACTT
66 GTTGATTT
* * * * **
76304649 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTC
1 TTG--------AAA---AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
76304714 TTGCAATATGAGTTGATTTTTTT
55 TCGCAATATGAGTTGA----TTT
* * * * **
76304737 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304802 GTTGATTTTT
66 GTTGA--TTT
* * * * **
76304812 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304877 GTTGATTTTT
66 GTTGA--TTT
** * *
76304887 TTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
76304952 GTTGAATTT
66 GTTG-ATTT
76304961 TT
1 TT
76304963 TTGAAAAATA
Statistics
Matches: 751, Mismatches: 118, Indels: 145
0.74 0.12 0.14
Matches are distributed among these distances:
72 9 0.01
73 104 0.14
74 12 0.02
75 157 0.21
76 124 0.17
77 80 0.11
78 22 0.03
79 15 0.02
80 10 0.01
81 11 0.01
82 5 0.01
83 18 0.02
84 127 0.17
85 8 0.01
87 23 0.03
88 7 0.01
89 6 0.01
90 13 0.02
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:76304169 original size:242 final size:236
Alignment explanation
Indices: 76302587--76304970 Score: 1564
Period size: 239 Copynumber: 10.1 Consensus size: 236
76302577 TTTTTTTATT
* * *
76302587 TTTTTTG-ACAACAGAAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* * * *
76302651 ATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCT
66 ATGAGTTG-A--TTTTTGAAAAACATAAA-TT-GAA-CAGAAATTGAAATTACCTCAACGTGTCT
* ** * *
76302716 TGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA--TTT--TTTGAAAGACAAAAATTGAAAATA
125 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAAATA
* * ** ** *
76302777 CCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
190 CATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
** *
76302824 TTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
1 -TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * * *
76302889 TATGAGTTGAATTTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTAAACCTGC
65 TATGAGTTG-A---TTTTTGAAAAACATAAATTG--AA-CAGAAATTGAAATTACCTCAACGTGT
** ** * *
76302954 CTTGAGGCTCAACTCACCTCTTACAATATGAGTTGA--TTT--TTTGAAAGATAAAAATTGAAAA
123 CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAAA
* * * ** ** *
76303015 TACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
188 TACATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
*
76303064 TTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
1 -TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* *
76303128 TATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCC
65 TATGAGTTG-A--TTTTTGAAAAACATAAATTG--AA-CAGAAATTGAAATTACCTCAACGTGTC
** * * *
76303193 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA----CAA-ACAGAAATTGAAATT
124 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAAAT
* * * * ** *
76303253 ACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCATAATATGAGTTGA
189 ACATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
*
76303301 TTTTTGAAAAATAGATTGAAACACAAAAATTGACAA-TACCTCAGCGTGTCCTGAGGCTCAACTC
1 TTTTT------T-GA---AAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTC
* *
76303365 ACCTCTCGCAATATGAGTTGATTTTTG----A-A-AAA-T----AGAAATTGAAAATACCTCAGC
54 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAATTACCTCAAC
* ** ** *
76303419 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAT-AAATTGAACA
119 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG----ATTTGAAA---CACA
* * * * * * ** ** **
76303483 GAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGA
177 AAAATTGAAAATACATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * * * * * **
76303543 TTTTTTTTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCA
1 --TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * * * *
76303608 ATATGAGTTGATTTTT-------TTGAAA--G-ACAAAAATTGAAAATACCTCAGCATGTCTTGA
64 ATATGAGTTGATTTTTGAAAAACAT-AAATTGAACAGAAATTGAAATTACCTCAACGTGTCTTGA
* * * *
76303663 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT-TTTTGACAA-A-GAAAATTGAAATTACC
128 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGA-AACACAAAAATTGAAAATACA
* * * **
76303725 TCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAA
192 TCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTG-A
*
76303771 TTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCA
1 -TTTTTTG----------A---AAAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCA
76303835 ACTCACCTCTCGCAATATGAGTTGATTTTTG----AC----A---AACAGAAATTGAAATTACCT
50 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAATTACCT
* * *
76303889 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAATAGGTTGAAA
115 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG----AT---TTGAAA
* * *
76303954 CACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAATTCACCTCTCACAATATGAGTTGA
173 CACAAAAATTGAAAATACATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* *
76304018 -TTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* *
76304082 ATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACATGTCTTGAGGC
66 ATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGC
* *
76304147 TCAACTCATTTCTCGCAATATGAGTTGATTTTT--TTTGAAAGACAAAAATTGAAAATACCTCAG
131 TCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAAATACATCAG
* ** ** *
76304210 CATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
196 CATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * *
76304251 TTTTTTTTTGACAAAGA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGC
1 ---TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
76304315 AATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG
63 AATATGAGTTG-A--TTTTTGAAAAACATAAATTG--AA-CAGAAATTGAAATTACCTCAACGTG
* ** * *
76304380 CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA----CAA-ACAGAAATTGAAA
122 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAA
* * * * * ** **
76304440 TTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGA
187 ATACATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * * * * *
76304490 TTTTTGAAAAATAGGTTGAAACACAAAAATTGACAA-TACATCAGCGTGCCCCGAGGCTCAATTC
1 --TTT------T---TTGAAAAACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTC
* * **
76304554 ACCTCTCACAAT-TGAGTTGA-TTTTG--------AAA---AACAGAAATTGAAAATACCTCAGT
54 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAATTACCTCAAC
* ** * ** *
76304606 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAAAACAT-AAATTGAACA
119 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG----ATTTGAAA---CACA
* * * * * ** ** **
76304670 GAAATTGAAACTACCTCAACATGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGA
177 AAAATTGAAAATACATCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * * * * **
76304730 TTTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGC
1 ---TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* * * * *
76304795 AATATGAGTTGATTTTT-------TTGAAA--G-ACAAAAATTGAAAATACCTCAGCATGTCTTG
63 AATATGAGTTGATTTTTGAAAAACAT-AAATTGAACAGAAATTGAAATTACCTCAACGTGTCTTG
* * * * *
76304850 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT--TTTTACA-ACAGAAATTGAAATTACC
127 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAAATACA
* * * *
76304912 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
192 TCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTG-A
76304958 TTTTTTTGAAAAA
1 -TTTTTTGAAAAA
76304971 TATAAATTTA
Statistics
Matches: 1848, Mismatches: 170, Indels: 268
0.81 0.07 0.12
Matches are distributed among these distances:
226 12 0.01
227 113 0.06
228 3 0.00
229 62 0.03
230 4 0.00
231 130 0.07
232 58 0.03
233 132 0.07
234 6 0.00
235 69 0.04
236 127 0.07
237 71 0.04
238 102 0.06
239 279 0.15
240 223 0.12
241 66 0.04
242 186 0.10
243 6 0.00
244 7 0.00
245 12 0.01
246 3 0.00
247 23 0.01
248 150 0.08
249 4 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (236 bp):
TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGC
TCAACTCATTTCTCGCAATATGAGTTGATTTTTGATTTGAAACACAAAAATTGAAAATACATCAG
CATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
Found at i:76304302 original size:557 final size:548
Alignment explanation
Indices: 76302585--76304962 Score: 2731
Period size: 557 Copynumber: 4.3 Consensus size: 548
76302575 ATTTTTTTTA
* *
76302585 TTTTTTTTGACAACAG-AAATTAAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCA
1 TTTTTTTTGACAA-AGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
*
76302649 ATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGC
65 ATATGAGTTGAATTTTTTTGAAAAATATAAA-TTAAAAGCAGAAATTGAAATTACCTCAACGTGC
* * * *
76302714 CTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGA-AAGACAAAAATTGAAAATAC
129 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAACACAAAAATTGAAATTAC
* * * *
76302778 CTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT------T-TTTACA
193 CTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAATATTGAAA
* * * * *
76302836 ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
258 ACAAAAATTGACAA-TACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTG-A
* * *
76302900 TTTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTAAACCTG-CCTTGAGGCTC
321 ---TTTTTG---------AA---AAAA-CAGAAATTGAAAATACCTCAACGTGTCC-TGAGGCTC
** * *
76302964 AACTCACCTCTTACAATATGAGTTGATTTTTTGA-A-AGAT-A-A-AAATTGAAAATACCTCAGC
369 AACTCACCTCTCGCAATATGAGTTGA-TTTTTGACATAAATGACAGAAATTGAAAATACCTCAAC
* * *
76303024 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACA-ACAGAAATTGAAA
433 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAA
* * * **
76303088 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
498 ATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-A--T
*
76303142 TTTTGAAAAATATAAATTGA-AAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAAC
1 TTTT------T-T---TTGACAAAG-A-AAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAAC
*
76303205 TCACCTCTCGCAATATGAGTTG-A--TTTTTG----------A--CAAA-CAGAAATTGAAATTA
53 TCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTAAAAGCAGAAATTGAAATTA
* ** **
76303254 CCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCATAATATGAGTTGATTTTTGAAAAATAGATT
118 CCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT------T-GA--
* **
76303318 GAAACACAAAAATTGACAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
172 -CAACACAAAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
* * * *
76303382 TTGATTTTTGAAAAATA--G-------AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
235 TTGATTTTTGAAAAATATTGAAAACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAACTC
* *
76303438 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAAC
300 ACCTCTCACAATATGAGTTGATTTTTG------A-AAA---AACAGAAATTGAAAATACCTCAAC
* ** * *** *
76303503 GTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTT-TTTTAAA-GACAAAAATTG
355 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACATAAATGACAGAAATTG
*
76303566 AAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAG
420 AAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAG
76303631 ACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
485 ACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
*
76303695 TTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAA
1 TTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
76303760 TATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCC
66 TATGAGTTGAATTTTTTTGAAAAATATAAATT-AAAAGCAGAAATTGAAATTACCTCAACGTGCC
*
76303825 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA-ACAGAAATTGAAATTACCT
130 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAACACAAAAATTGAAATTACCT
*
76303889 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAATAGGTTGAAA
195 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAATA--TTGAAA
*
76303954 CACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAATTCACCTCTCACAATATGAGTTGAT
258 -ACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
**
76304019 TTTTG-AAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
322 TTTTGAAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
76304083 TGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACATGTCTTGAGGCT
387 TGAGTTGATTTTTG----ACATAAA-TG-ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCT
76304148 CAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCAT
446 CAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCAT
76304213 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
510 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
*
76304252 TTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAA
1 TTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
76304317 TATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCC
66 TATGAGTTGAATTTTTTTGAAAAATATAAATT-AAAAGCAGAAATTGAAATTACCTCAACGTGCC
*
76304382 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA-ACAGAAATTGAAATTACCT
130 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAACACAAAAATTGAAATTACCT
*
76304446 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAATAGGTTGAAA
195 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAATA--TTGAAA
*
76304511 CACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAATTCACCTCTCACAAT-TGAGTTGA-
258 -ACAAAAATTGACAATACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
**
76304574 TTTTG-AAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
322 TTTTGAAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
* *
76304638 TGAGTTGACTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACATGTCTTGAGGCT
387 TGAGTTGATTTTTG----ACATAAA-TG-ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCT
*
76304703 CAACTCATTTCTTGCAATATGAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA
446 CAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA
76304768 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
509 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
* * * * **
76304807 -TTTTTTTGA-AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGC
1 TTTTTTTTGACAA-A-GAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
76304870 AATATGAGTTG-A--TTTTT------T-T---TTACAA-CAGAAATTGAAATTACCTCAGCGTGT
64 AATATGAGTTGAATTTTTTTGAAAAATATAAATTAAAAGCAGAAATTGAAATTACCTCAACGTG-
76304921 CC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
128 CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
76304963 TTGAAAAATA
Statistics
Matches: 1644, Mismatches: 84, Indels: 202
0.85 0.04 0.10
Matches are distributed among these distances:
540 57 0.03
541 11 0.01
542 55 0.03
543 8 0.00
544 4 0.00
545 7 0.00
546 4 0.00
547 70 0.04
548 64 0.04
551 64 0.04
552 16 0.01
553 69 0.04
554 16 0.01
555 279 0.17
556 206 0.13
557 395 0.24
558 11 0.01
559 114 0.07
560 55 0.03
561 2 0.00
562 63 0.04
563 3 0.00
564 1 0.00
565 8 0.00
566 2 0.00
567 7 0.00
568 53 0.03
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (548 bp):
TTTTTTTTGACAAAGAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGAATTTTTTTGAAAAATATAAATTAAAAGCAGAAATTGAAATTACCTCAACGTGCCT
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAACACAAAAATTGAAATTACCTC
AGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAATATTGAAAACA
AAAATTGACAATACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
GAAAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGACATAAATGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTT
CTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCT
CAACTCATTTCTCGCAATATGAGTTGAT
Found at i:76304595 original size:85 final size:85
Alignment explanation
Indices: 76304431--76304587 Score: 194
Period size: 85 Copynumber: 1.9 Consensus size: 85
76304421 TGACAAACAG
* * * ** **
76304431 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTG
1 AAATTGAAATTACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG
* *
76304496 AAAAATAGGTTGAAACACAA
66 AAAAACAGATTGAAACACAA
*
76304516 AAATTGACAA-TACATCAGCGTGCCCCGAGGCTCAATTCACCTCTCACAAT-TGAGTTGA-TTTT
1 AAATTGA-AATTACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
76304578 GAAAAACAGA
65 GAAAAACAGA
76304588 AATTGAAAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
83 12 0.20
84 8 0.13
85 39 0.64
86 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (85 bp):
AAATTGAAATTACATCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG
AAAAACAGATTGAAACACAA
Found at i:76305052 original size:90 final size:90
Alignment explanation
Indices: 76304895--76305073 Score: 261
Period size: 90 Copynumber: 2.0 Consensus size: 90
76304885 TTTTTTACAA
* *
76304895 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
* *
76304960 TTTTTGAAAAATATAAATTTAAAAG
66 TTTTTGAAAAATAGAAATTGAAAAG
* * * *
76304985 CAGAAATTAAAATTACCTTAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATT
1 CAGAAATTAAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
*
76305049 TTTTTTGAAAAGTAGAAATTGAAAA
65 TTTTTTGAAAAATAGAAATTGAAAA
76305074 TACCTCAATG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
89 2 0.03
90 77 0.97
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (90 bp):
CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
TTTTTGAAAAATAGAAATTGAAAAG
Found at i:76305106 original size:76 final size:75
Alignment explanation
Indices: 76304980--76305145 Score: 230
Period size: 76 Copynumber: 2.2 Consensus size: 75
76304970 ATATAAATTT
* * *
76304980 AAAAGCAGAAATTAAAATTACCTTAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTT
1 AAAAGCAGAAATTAAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
76305045 GATTTTTTTTG
66 GA-TTTTTTTG
* * *
76305056 AAAAGTAGAAATTGAAAA-TACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAGCAGAAATT-AAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
76305120 TGATTTTTTTG
65 TGATTTTTTTG
*
76305131 -AAA-CAGAAATAAAAA
1 AAAAGCAGAAATTAAAA
76305146 CATCAAAATA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
72 4 0.05
73 6 0.07
74 3 0.04
75 8 0.10
76 56 0.69
77 4 0.05
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (75 bp):
AAAAGCAGAAATTAAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:76309783 original size:91 final size:91
Alignment explanation
Indices: 76309628--76309810 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
76309618 GTACAGATAG
76309628 GCTATAAAATGAGGAGATGATTATGAAATTAGTGATAATGCGAAAGATCGTGATAAAATGCATCT
1 GCTATAAAATGAGGAGATGATTATGAAATTAGTGATAATGCGAAAGATCGTGATAAAATGCATCT
76309693 TCATTGATATTCATTTAAATGATAAA
66 TCATTGATATTCATTTAAATGATAAA
76309719 GCTATAAAATGAGGAGATGATTATGAAATTAGTGATAATGCGAAAGATCGTGATAAAATGCATCT
1 GCTATAAAATGAGGAGATGATTATGAAATTAGTGATAATGCGAAAGATCGTGATAAAATGCATCT
76309784 TCATTGATATTCATTTAAATGATAAA
66 TCATTGATATTCATTTAAATGATAAA
76309810 G
1 G
76309811 AGTGAATGTA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.32
Consensus pattern (91 bp):
GCTATAAAATGAGGAGATGATTATGAAATTAGTGATAATGCGAAAGATCGTGATAAAATGCATCT
TCATTGATATTCATTTAAATGATAAA
Found at i:76313552 original size:12 final size:12
Alignment explanation
Indices: 76313535--76313565 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
76313525 TATGCAATAA
*
76313535 ATGAATGGATGC
1 ATGAATGAATGC
76313547 ATGAATGAATGC
1 ATGAATGAATGC
76313559 ATGAATG
1 ATGAATG
76313566 TCAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26
Consensus pattern (12 bp):
ATGAATGAATGC
Found at i:76315407 original size:13 final size:15
Alignment explanation
Indices: 76315361--76315402 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
76315351 TTAAGAAACG
76315361 TACATAAAAAATATA
1 TACATAAAAAATATA
76315376 TACATAAAAAATATA
1 TACATAAAAAATATA
76315391 TACATAAAAAAT
1 TACATAAAAAAT
76315403 TTACAACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (15 bp):
TACATAAAAAATATA
Found at i:76320732 original size:12 final size:12
Alignment explanation
Indices: 76320715--76320740 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76320705 GAAATTAAGC
76320715 TTTTAGTGGCGT
1 TTTTAGTGGCGT
76320727 TTTTAGTGGCGT
1 TTTTAGTGGCGT
76320739 TT
1 TT
76320741 GGACTGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.31, T:0.54
Consensus pattern (12 bp):
TTTTAGTGGCGT
Found at i:76341106 original size:30 final size:29
Alignment explanation
Indices: 76341070--76341134 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 29
76341060 AAACGGAAGT
76341070 TTTGGCACTAAGTGTGCGATTTAAAATAGC
1 TTTGGCACTAAGTGTGCGATTT-AAATAGC
* *
76341100 TTTGGCACTAAGTGTGTGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAATAGC
76341129 TTTGGC
1 TTTGGC
76341135 TACTTGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 12 0.36
30 21 0.64
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.37
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAAATAGC
Found at i:76341923 original size:37 final size:37
Alignment explanation
Indices: 76341873--76341954 Score: 164
Period size: 37 Copynumber: 2.2 Consensus size: 37
76341863 TAAGGTTTAT
76341873 AAGTATGTAAATGGTTGATAATATTATGGCATGAATG
1 AAGTATGTAAATGGTTGATAATATTATGGCATGAATG
76341910 AAGTATGTAAATGGTTGATAATATTATGGCATGAATG
1 AAGTATGTAAATGGTTGATAATATTATGGCATGAATG
76341947 AAGTATGT
1 AAGTATGT
76341955 TTTAGCTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.35
Consensus pattern (37 bp):
AAGTATGTAAATGGTTGATAATATTATGGCATGAATG
Found at i:76349224 original size:49 final size:48
Alignment explanation
Indices: 76349168--76349348 Score: 229
Period size: 49 Copynumber: 3.7 Consensus size: 48
76349158 TTGGTACGCA
**
76349168 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA-G
* * *
76349217 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCGGGTAGCA-
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTA-CAG
* * *
76349267 TAGTAGTCTGCACTTAGTACTTCAAATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA-G
*
76349316 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
76349349 TCACAGTAGA
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
47 2 0.02
48 9 0.08
49 62 0.55
50 30 0.27
51 8 0.07
52 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACAG
Found at i:76349336 original size:99 final size:100
Alignment explanation
Indices: 76349160--76349346 Score: 313
Period size: 99 Copynumber: 1.9 Consensus size: 100
76349150 AAAGCTATTT
* *
76349160 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCAATTATCCAGTACACGTAGTAGCC
76349225 TGCACTTAGTACTACACATGTGATCGAAGTTATCG
66 TGCACTTAGTACTACACATGTGATCGAAGTTATCG
* * * *
76349260 GGTA-GCATAGTAGTCTGCACTTAGTACTTCAAATGCGACCAATTATCCGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCAATTATCCAGTACACGTAGTAGCC
76349324 TGCACTTAGTACTACACATGTGA
66 TGCACTTAGTACTACACATGTGA
76349347 CCTCACAGTA
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 77 0.95
100 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCAATTATCCAGTACACGTAGTAGCC
TGCACTTAGTACTACACATGTGATCGAAGTTATCG
Found at i:76351435 original size:26 final size:26
Alignment explanation
Indices: 76351406--76351462 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
76351396 ACCTGTAGGA
76351406 GATAGTTCTTGAGTATGACTGAGGGT
1 GATAGTTCTTGAGTATGACTGAGGGT
*
76351432 GATAGTTCTTGAGTTTGACTGAGGGT
1 GATAGTTCTTGAGTATGACTGAGGGT
76351458 GATAG
1 GATAG
76351463 ATTAATGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.23, C:0.07, G:0.35, T:0.35
Consensus pattern (26 bp):
GATAGTTCTTGAGTATGACTGAGGGT
Found at i:76362990 original size:47 final size:48
Alignment explanation
Indices: 76362936--76363029 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 48
76362926 TGAGAATTAG
76362936 TTGTAAGTGAATAATTAGATGAACGAAATC-ATTTTTAGGCAAAAATT
1 TTGTAAGTGAATAATTAGATGAACGAAATCAATTTTTAGGCAAAAATT
*
76362983 TTGTAAGTGAATAATTAGATGAACGAAATCAATTTTTTGGCAAAAAT
1 TTGTAAGTGAATAATTAGATGAACGAAATCAATTTTTAGGCAAAAAT
76363030 ATTAAGTATA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 30 0.67
48 15 0.33
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (48 bp):
TTGTAAGTGAATAATTAGATGAACGAAATCAATTTTTAGGCAAAAATT
Found at i:76364996 original size:26 final size:26
Alignment explanation
Indices: 76364966--76365018 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
76364956 ATTGTGAATG
76364966 AATGGTGAACTTTACTTATTAACTAT
1 AATGGTGAACTTTACTTATTAACTAT
*
76364992 AATGGTGAGCTTTACTTATTAACTAT
1 AATGGTGAACTTTACTTATTAACTAT
76365018 A
1 A
76365019 CGAGGTTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (26 bp):
AATGGTGAACTTTACTTATTAACTAT
Found at i:76386119 original size:14 final size:13
Alignment explanation
Indices: 76386100--76386132 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
76386090 ATAATGCAAT
76386100 TTACCATAATCTCA
1 TTACCATAAT-TCA
76386114 TTACCATAATTCA
1 TTACCATAATTCA
76386127 TT-CCAT
1 TTACCAT
76386133 CACAAACTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 5 0.26
14 10 0.53
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.39
Consensus pattern (13 bp):
TTACCATAATTCA
Found at i:76397506 original size:30 final size:30
Alignment explanation
Indices: 76397463--76397519 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
76397453 TGTGCCCTTC
* * *
76397463 CACACAGGTTGGACACATGCCCATGTGAGG
1 CACACAGGCTGGACACACGACCATGTGAGG
*
76397493 CACACGGGCTGGACACACGACCATGTG
1 CACACAGGCTGGACACACGACCATGTG
76397520 CCAGCTCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.14
Consensus pattern (30 bp):
CACACAGGCTGGACACACGACCATGTGAGG
Found at i:76413519 original size:24 final size:24
Alignment explanation
Indices: 76413492--76413543 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
76413482 TTAGTAAGTC
*
76413492 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
76413516 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
76413540 AAAT
1 AAAT
76413544 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:76415489 original size:24 final size:24
Alignment explanation
Indices: 76415462--76415513 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
76415452 TTAGTAAGTC
*
76415462 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
76415486 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
76415510 AAAT
1 AAAT
76415514 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:76424942 original size:60 final size:60
Alignment explanation
Indices: 76424849--76424968 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
76424839 AAAAGAAAGG
76424849 TGACTGTATTGAAAGAAGGGTGTCCTTTGGAAGGATTGTGTGTTTATTCTTAATATGTTC
1 TGACTGTATTGAAAGAAGGGTGTCCTTTGGAAGGATTGTGTGTTTATTCTTAATATGTTC
76424909 TGACTGTATTGAAAGAAGGGTGTCCTTTGGAAGGATTGTGTGTTTATTCTTAATATGTTC
1 TGACTGTATTGAAAGAAGGGTGTCCTTTGGAAGGATTGTGTGTTTATTCTTAATATGTTC
76424969 ATTGTACTCC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (60 bp):
TGACTGTATTGAAAGAAGGGTGTCCTTTGGAAGGATTGTGTGTTTATTCTTAATATGTTC
Found at i:76426952 original size:22 final size:23
Alignment explanation
Indices: 76426912--76426958 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
76426902 CACGTTAGCG
76426912 AACAAATATATAAAAAT-AAATA
1 AACAAATATATAAAAATAAAATA
* * *
76426934 AACAAATATTTATATATAAAATA
1 AACAAATATATAAAAATAAAATA
76426957 AA
1 AA
76426959 ATATAAATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (23 bp):
AACAAATATATAAAAATAAAATA
Found at i:76428660 original size:31 final size:31
Alignment explanation
Indices: 76428594--76428662 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
76428584 TAAAAAGTGT
**
76428594 TAATTAAGCTTAAGTTTAATTAATTATAAGT
1 TAATTAAGCTTAAGTTTAATTAATTATAAAC
76428625 TAATTAAG-TTAA-TTATAATTAATTAATAAAC
1 TAATTAAGCTTAAGTT-TAATTAATT-ATAAAC
76428656 TAATTAA
1 TAATTAA
76428663 AATGTATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 2 0.06
30 13 0.38
31 19 0.56
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (31 bp):
TAATTAAGCTTAAGTTTAATTAATTATAAAC
Found at i:76429780 original size:21 final size:24
Alignment explanation
Indices: 76429745--76429789 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
76429735 ATTTAACGTG
*
76429745 AAAAAACTCATCCAA-ATAGATAA
1 AAAAAACTCATCCAACAAAGATAA
76429768 AAAAAAC-CA-CCAACAAAGATAA
1 AAAAAACTCATCCAACAAAGATAA
76429790 TTTTACTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 9 0.45
23 7 0.35
ACGTcount: A:0.64, C:0.20, G:0.04, T:0.11
Consensus pattern (24 bp):
AAAAAACTCATCCAACAAAGATAA
Found at i:76430006 original size:24 final size:24
Alignment explanation
Indices: 76429979--76430030 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
76429969 TTCGTAGGTC
* *
76429979 AAATAGATCATGCTAATAAATGCT
1 AAATAGATCATACTAATAAATACT
* *
76430003 AAATATATTATACTAATAAATACT
1 AAATAGATCATACTAATAAATACT
76430027 AAAT
1 AAAT
76430031 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAGATCATACTAATAAATACT
Found at i:76438555 original size:43 final size:43
Alignment explanation
Indices: 76438493--76438654 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
76438483 GTACAATGTC
* * *
76438493 ATGTCCCAGATATGGTCTTACATGTTATTACATATCGATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAATTACATATCGATGCCA
* * * * *
76438536 CTGTCCCAGACAGGGTCTTACACGAAATTGA-TTAACGATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAATT-ACATATCGATGCCA
* * *
76438579 ATGTCCTAGACATGGTCTTACACGTAATCACA-ATACAATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAATTACATAT-CGATGCCA
* * *
76438622 ATGTCCTAGACATGGTCCTACATGTAATTACAT
1 ATGTCCCAGACATGGTCTTACACGTAATTACAT
76438655 CTCGGTAACC
Statistics
Matches: 96, Mismatches: 19, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
42 2 0.02
43 93 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTTACACGTAATTACATATCGATGCCA
Found at i:76438771 original size:21 final size:21
Alignment explanation
Indices: 76438746--76438788 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
76438736 CGATTCTTGC
76438746 TTGTATTTACTTGTTCAACAT
1 TTGTATTTACTTGTTCAACAT
76438767 TTGTATTTACTTGTTCAACAT
1 TTGTATTTACTTGTTCAACAT
76438788 T
1 T
76438789 CATAGTAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (21 bp):
TTGTATTTACTTGTTCAACAT
Found at i:76451676 original size:8 final size:7
Alignment explanation
Indices: 76451659--76451715 Score: 52
Period size: 6 Copynumber: 8.6 Consensus size: 7
76451649 TACTTAAGTA
76451659 AATATAT
1 AATATAT
76451666 AATATTAT
1 AATA-TAT
76451674 AATA-AT
1 AATATAT
76451680 AATA-AT
1 AATATAT
76451686 AATA-AT
1 AATATAT
76451692 AATA-AT
1 AATATAT
*
76451698 AATAAAGT
1 AATATA-T
76451706 AA-ATAT
1 AATATAT
76451712 AATA
1 AATA
76451716 AAACAAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
6 27 0.60
7 8 0.18
8 10 0.22
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (7 bp):
AATATAT
Found at i:76451716 original size:3 final size:3
Alignment explanation
Indices: 76451659--76451702 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
76451649 TACTTAAGTA
*
76451659 AAT ATAT AAT -AT TAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
76451703 AGTAAATATA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:76451717 original size:9 final size:10
Alignment explanation
Indices: 76451657--76451717 Score: 51
Period size: 9 Copynumber: 6.4 Consensus size: 10
76451647 AATACTTAAG
76451657 TAAATATATAA
1 TAAATA-ATAA
*
76451668 TATTATAATAA
1 TA-AATAATAA
76451679 T-AATAATAA
1 TAAATAATAA
76451688 T-AATAATAA
1 TAAATAATAA
*
76451697 T-AATAA-AG
1 TAAATAATAA
76451705 TAAAT-ATAA
1 TAAATAATAA
76451714 TAAA
1 TAAA
76451718 ACAAATAAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 3 0.07
9 30 0.70
11 7 0.16
12 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (10 bp):
TAAATAATAA
Found at i:76459665 original size:16 final size:14
Alignment explanation
Indices: 76459625--76459686 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
76459615 ATTTTAACGG
*
76459625 AATTAGAATTATGTT
1 AATTAAAATTAT-TT
*
76459640 AA-AAAAATTATTT
1 AATTAAAATTATTT
*
76459653 AATTAGGAAATTAATT
1 AATTA--AAATTATTT
76459669 AATTAAAATTAATTT
1 AATTAAAATT-ATTT
76459684 AAT
1 AAT
76459687 ATATTTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 4 0.11
14 13 0.34
15 8 0.21
16 13 0.34
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTAAAATTATTT
Found at i:76464800 original size:44 final size:45
Alignment explanation
Indices: 76464735--76464825 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
76464725 ACCTCTATTC
* * *
76464735 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
76464779 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
76464824 CA
1 CA
76464826 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:76464827 original size:16 final size:16
Alignment explanation
Indices: 76464806--76464841 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
76464796 GATTAGCTAT
76464806 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
76464822 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
76464838 TACA
1 TACA
76464842 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:76466093 original size:24 final size:25
Alignment explanation
Indices: 76466048--76466111 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
76466038 TTTTTTTAAC
* *
76466048 TTATTATTTTAATATATTATTTTGTT
1 TTATTTTTTTAA-ATATCATTTTGTT
76466074 TTATTTTTTTAAATA-CATTTTGTT
1 TTATTTTTTTAAATATCATTTTGTT
*
76466098 TTATTTTTTAAAAT
1 TTATTTTTTTAAAT
76466112 TTTCTTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 21 0.60
25 3 0.09
26 11 0.31
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (25 bp):
TTATTTTTTTAAATATCATTTTGTT
Found at i:76467152 original size:23 final size:23
Alignment explanation
Indices: 76467122--76467168 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
76467112 CTTTGGACGT
76467122 AGTGAGGGTGCTAACCCTTCCTC
1 AGTGAGGGTGCTAACCCTTCCTC
76467145 AGTGAGGGTGCTAACCCTTCCTC
1 AGTGAGGGTGCTAACCCTTCCTC
76467168 A
1 A
76467169 TACGTAACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.30, G:0.26, T:0.26
Consensus pattern (23 bp):
AGTGAGGGTGCTAACCCTTCCTC
Found at i:76469885 original size:9 final size:9
Alignment explanation
Indices: 76469861--76469913 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
76469851 ATAAATTATT
76469861 TTTTTATAA
1 TTTTTATAA
* *
76469870 ATATTATAA
1 TTTTTATAA
*
76469879 TTTTTATGA
1 TTTTTATAA
76469888 TTTTTAATTAA
1 TTTTT-A-TAA
76469899 TTTTTAATAA
1 TTTTT-ATAA
76469909 TTTTT
1 TTTTT
76469914 TTTATAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
9 18 0.50
10 9 0.25
11 9 0.25
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:76469903 original size:11 final size:10
Alignment explanation
Indices: 76469875--76469913 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
76469865 TATAAATATT
76469875 ATAATTTTT-
1 ATAATTTTTA
*
76469884 ATGATTTTTA
1 ATAATTTTTA
76469894 ATTAATTTTTA
1 A-TAATTTTTA
76469905 ATAATTTTT
1 ATAATTTTT
76469914 TTTATAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 8 0.31
10 9 0.35
11 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:76469929 original size:21 final size:21
Alignment explanation
Indices: 76469873--76469937 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
76469863 TTTATAAATA
* *
76469873 TTATAATTTTTATGATTTTTA
1 TTATAATTTTTATAATTTTTT
*
76469894 AT-TAATTTTTAATAATTTTTT
1 TTATAATTTTT-ATAATTTTTT
* *
76469915 TTATAAATTTTATAATTCTTT
1 TTATAATTTTTATAATTTTTT
76469936 TT
1 TT
76469938 GTGCTTTTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 8 0.22
21 21 0.58
22 7 0.19
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTATAATTTTTATAATTTTTT
Found at i:76474725 original size:15 final size:15
Alignment explanation
Indices: 76474692--76474731 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
76474682 TGTGCTTGAT
*
76474692 TTAGGGTTTT-AGGG
1 TTAGGGTTTTAAGAG
76474706 TTAGGGTTTTAAGAG
1 TTAGGGTTTTAAGAG
76474721 TTAGGGTTTTA
1 TTAGGGTTTTA
76474732 TTGTGTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (15 bp):
TTAGGGTTTTAAGAG
Found at i:76475081 original size:126 final size:126
Alignment explanation
Indices: 76474853--76475274 Score: 564
Period size: 126 Copynumber: 3.4 Consensus size: 126
76474843 TAATTAAATT
* * *
76474853 AGGATGCACTATCAGCAAAATTACTAAAAAAAACTCCCACGTTGACGCTCTTTTGCTACAGTAGT
1 AGGATGCACTATAAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTCTTTTGCTACAGTAGT
* *
76474918 ATCTGAAAAAATAATTTTGAGAAGACA-TTTCTAAACAAATAGTGTCCAAAATGCTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGA-AGTTTCTGAACAAATAGTGTCCAAAAAGCTTCAAGC
* * * ** * * *
76474979 ATGATGCACTGTAAGCAAAATTATTGAAAAAAGTTCCCACATGGACGCTCTTTTGCTAGAATAGT
1 AGGATGCACTATAAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTCTTTTGCTACAGTAGT
*
76475044 ATCTGAAAAAATAATTTTGAGAAGAAGTTTCTGAACAAATAGTATCCAAAACA-CTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGAAGTTTCTGAACAAATAGTGTCCAAAA-AGCTTCAAGC
* *
76475105 AGGATGCACTATCAA-CAAAATTACTGAAAAAAACTCCCACGTGGATGCTTTTTTGCTACAGTAG
1 AGGATGCACTAT-AAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTCTTTTGCTACAGTAG
* * * *
76475169 TATCTGAAAAAGTAATTTTGAGAAGACGTTTTTGAACAAATATTGTCCAAAAAGCTTCAAGC
65 TATCTGAAAAAATAATTTTGAGAAGAAGTTTCTGAACAAATAGTGTCCAAAAAGCTTCAAGC
* * * * *
76475231 AGGATGCACTGTCAGTAAAATTAC-GTAAAAAGCTCCCACGTGGA
1 AGGATGCACTATAAGCAAAATTACTGAAAAAAACTCCCACGTGGA
76475275 TCCACTTCAA
Statistics
Matches: 257, Mismatches: 34, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
125 21 0.08
126 234 0.91
127 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (126 bp):
AGGATGCACTATAAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTCTTTTGCTACAGTAGT
ATCTGAAAAAATAATTTTGAGAAGAAGTTTCTGAACAAATAGTGTCCAAAAAGCTTCAAGC
Found at i:76477906 original size:24 final size:24
Alignment explanation
Indices: 76477860--76477906 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
76477850 ATGAATGCAG
* *
76477860 AGGTGTTTGTATCACCTATGGCGA
1 AGGTGTTTGAATCACCTAAGGCGA
76477884 AGGTGTTTGAATC-CCATAAGGCG
1 AGGTGTTTGAATCACC-TAAGGCG
76477907 GTGGGGATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (24 bp):
AGGTGTTTGAATCACCTAAGGCGA
Found at i:76479909 original size:9 final size:10
Alignment explanation
Indices: 76479872--76479922 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
76479862 TAAAGAAAGC
*
76479872 TTTGAGAAAA
1 TTTGAGAGAA
*
76479882 TATGAGAGAAA
1 TTTGAGAG-AA
76479893 TTTGAGAGAA
1 TTTGAGAGAA
76479903 TTTAGAGAGAA
1 TTT-GAGAGAA
76479914 TTATGAGAG
1 TT-TGAGAG
76479923 GACTTTCGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 11 0.31
11 23 0.66
12 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:76479913 original size:22 final size:20
Alignment explanation
Indices: 76479872--76479922 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
76479862 TAAAGAAAGC
*
76479872 TTTGAGAAAATATGAGAGAAA
1 TTTGAGAGAATATGAGAG-AA
*
76479893 TTTGAGAGAATTTAGAGAGAA
1 TTTGAGAGAATAT-GAGAGAA
76479914 TTATGAGAG
1 TT-TGAGAG
76479923 GACTTTCGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (20 bp):
TTTGAGAGAATATGAGAGAA
Found at i:76483110 original size:27 final size:30
Alignment explanation
Indices: 76483080--76483143 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 30
76483070 ATAATTTTTT
*
76483080 AATAATTTTAATGATTTTT-AA-TTT-AAA
1 AATAATTTTAATAATTTTTAAATTTTAAAA
* *
76483107 AATAGTTTTTATAATTTTTAAATTTTAAAA
1 AATAATTTTAATAATTTTTAAATTTTAAAA
76483137 AATAATT
1 AATAATT
76483144 AAATGCTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 16 0.53
28 2 0.07
29 3 0.10
30 9 0.30
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (30 bp):
AATAATTTTAATAATTTTTAAATTTTAAAA
Found at i:76486942 original size:15 final size:15
Alignment explanation
Indices: 76486902--76486946 Score: 58
Period size: 13 Copynumber: 3.1 Consensus size: 15
76486892 TATTAATATT
*
76486902 ATTAAATTTATATAAA
1 ATTAAATTTATA-ATA
76486918 ATTAAA--TATAATA
1 ATTAAATTTATAATA
76486931 ATTAAATTTATAATA
1 ATTAAATTTATAATA
76486946 A
1 A
76486947 ACTTTTTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 8 0.31
14 4 0.15
15 8 0.31
16 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATTAAATTTATAATA
Found at i:76488364 original size:46 final size:46
Alignment explanation
Indices: 76488289--76488518 Score: 379
Period size: 46 Copynumber: 5.0 Consensus size: 46
76488279 TTTGACATGA
* *
76488289 TGCCATAGTGTCTTTCAACTACATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAAC--CATGGTCTTACACATTTCATATCAGGT
*
76488337 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76488383 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
76488429 TGCTATGGTATCTTTCAACCATGGTGTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
76488475 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
76488519 AGAGCACACT
Statistics
Matches: 172, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
46 156 0.91
48 16 0.09
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:76495096 original size:16 final size:17
Alignment explanation
Indices: 76495071--76495109 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
76495061 CTATTTTAAG
76495071 TTTA-TTTTAATT-TTA
1 TTTATTTTTAATTATTA
76495086 TTTATTTTTAATTATTA
1 TTTATTTTTAATTATTA
76495103 -TTATTTT
1 TTTATTTT
76495110 GGATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 15 0.68
17 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTTTAATTATTA
Found at i:76495121 original size:17 final size:17
Alignment explanation
Indices: 76495072--76495127 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
76495062 TATTTTAAGT
76495072 TTATTTT-AATTTTAT-
1 TTATTTTGAATTTTATA
* *
76495087 TTATTTTTAATTAT-TA
1 TTATTTTGAATTTTATA
*
76495103 TTATTTTGGATTTTATA
1 TTATTTTGAATTTTATA
76495120 TTAATTTT
1 TT-ATTTT
76495128 CTTAAGCTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 8 0.24
16 16 0.48
17 4 0.12
18 5 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.70
Consensus pattern (17 bp):
TTATTTTGAATTTTATA
Found at i:76501962 original size:20 final size:19
Alignment explanation
Indices: 76501906--76501962 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
76501896 CCCACATATA
* * *
76501906 CCAAAACCCAAAATCAAAC
1 CCAATACCCAAAACCTAAC
*
76501925 CCAATACCCAAATCCTAAC
1 CCAATACCCAAAACCTAAC
* *
76501944 CCATTTACCCAAAAGCTAA
1 CCA-ATACCCAAAACCTAA
76501963 AATAACCCAA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.47, C:0.37, G:0.02, T:0.14
Consensus pattern (19 bp):
CCAATACCCAAAACCTAAC
Found at i:76505381 original size:16 final size:15
Alignment explanation
Indices: 76505356--76505403 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
76505346 CTATTTTAAG
76505356 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
76505371 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
76505388 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
76505403 T
1 T
76505404 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:76506340 original size:7 final size:7
Alignment explanation
Indices: 76506330--76506354 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76506320 TTATTTCATC
76506330 TTTTACT
1 TTTTACT
76506337 TTTTACT
1 TTTTACT
76506344 TTTTACT
1 TTTTACT
76506351 TTTT
1 TTTT
76506355 CTTGTGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTACT
Found at i:76506341 original size:19 final size:19
Alignment explanation
Indices: 76506294--76506333 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
76506284 TATTTTGTTA
76506294 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
76506313 TTTATTTTTATTTCATCTT
1 TTTATTTTTATTTCATCTT
76506332 TT
1 TT
76506334 ACTTTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTTTATTTCATCTT
Found at i:76526984 original size:10 final size:10
Alignment explanation
Indices: 76526969--76526994 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
76526959 TGTCAACTTG
76526969 TATCGACTCA
1 TATCGACTCA
76526979 TATCGACTCA
1 TATCGACTCA
76526989 TATCGA
1 TATCGA
76526995 TAGTGTCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (10 bp):
TATCGACTCA
Found at i:76529961 original size:40 final size:39
Alignment explanation
Indices: 76529881--76529992 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 39
76529871 TATCAATAAA
76529881 CTGAAGCTATTT-CAGTATCGCACACTTAGTGCCTCATATAG
1 CTGAAGCTATTTCCA--ATCGCACACTTAGTG-CTCATATAG
*
76529922 CTGAAGTTA-TTCCAATTCGCACACTTAGTGCT-ATTTATAG
1 CTGAAGCTATTTCCAA-TCGCACACTTAGTGCTCA--TATAG
* *
76529962 CTGAAGCTATTTCGAATCGTACACTTAGTGC
1 CTGAAGCTATTTCCAATCGCACACTTAGTGC
76529993 CGAACATAGT
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
38 1 0.02
39 3 0.05
40 43 0.69
41 15 0.24
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (39 bp):
CTGAAGCTATTTCCAATCGCACACTTAGTGCTCATATAG
Found at i:76532126 original size:29 final size:30
Alignment explanation
Indices: 76532067--76532124 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76532057 TCCGAGCCTT
*
76532067 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
76532097 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
76532125 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:76532354 original size:13 final size:13
Alignment explanation
Indices: 76532336--76532367 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
76532326 TTTCCAGCAA
76532336 TTATGAATTTATT
1 TTATGAATTTATT
76532349 TTATGAATTTATT
1 TTATGAATTTATT
*
76532362 TGATGA
1 TTATGA
76532368 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:76532574 original size:50 final size:51
Alignment explanation
Indices: 76532471--76532703 Score: 283
Period size: 50 Copynumber: 4.5 Consensus size: 51
76532461 AAGAAATCCT
* *
76532471 ATGTAAGACCATGTCTGGGACATAGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC----GATCATGAGAGGTCCC
* *
76532527 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATCATGAGAGGTCCC
* * *
76532577 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATCATGAGAGGTCCC
* * * **
76532627 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACGAGAACATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATCATGAG-AGGTCCC
76532678 ATGTAAGACCATGTCTGGGACATGGC
1 ATGTAAGACCATGTCTGGGACATGGC
76532704 TTTGGCATGT
Statistics
Matches: 158, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 94 0.59
51 31 0.20
55 2 0.01
56 30 0.19
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (51 bp):
ATGTAAGACCATGTCTGGGACATGGCATGGGCACCGATCATGAGAGGTCCC
Found at i:76532644 original size:100 final size:104
Alignment explanation
Indices: 76532462--76532711 Score: 332
Period size: 100 Copynumber: 2.4 Consensus size: 104
76532452 ATTTGGGTAA
* *
76532462 AGAA-ATCCTATGTAAGACCATGTCTGGGACATAGCATTGGCATCCTTAAGATCATGAGAGGTCC
1 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCC
* * *
76532526 CCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GATG
63 CCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
** * *
76532568 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCT
1 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCT
76532629 ATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 ATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
*
76532668 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
76532712 GTTATTATCA
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
99 1 0.01
100 50 0.39
101 39 0.30
105 3 0.02
106 36 0.28
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (104 bp):
AGAACATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCT
ATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:76539718 original size:29 final size:30
Alignment explanation
Indices: 76539659--76539716 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76539649 TCCGAGCCTT
*
76539659 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
76539689 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
76539717 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:76539946 original size:13 final size:13
Alignment explanation
Indices: 76539928--76539959 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
76539918 TTTTCAGCAA
76539928 TTATGAATTTATT
1 TTATGAATTTATT
76539941 TTATGAATTTATT
1 TTATGAATTTATT
*
76539954 TGATGA
1 TTATGA
76539960 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:76540167 original size:50 final size:50
Alignment explanation
Indices: 76540054--76540295 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
76540044 ATTTGGGTAA
* * * *
76540054 AGAGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
76540110 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
76540160 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
76540210 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
76540260 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
76540296 TTTGGCATGT
Statistics
Matches: 165, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:76540242 original size:100 final size:103
Alignment explanation
Indices: 76540054--76540303 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
76540044 ATTTGGGTAA
*
76540054 AGAGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
76540119 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
76540160 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
76540222 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
76540260 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
76540304 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.39
101 39 0.30
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:76548986 original size:126 final size:126
Alignment explanation
Indices: 76548781--76549121 Score: 488
Period size: 126 Copynumber: 2.7 Consensus size: 126
76548771 AAGATATTTA
* * * * * * * * *
76548781 ATTATTTGGTCCAAC-GAAAAATCGAAACCCAACATGTTAAGGTACAATTTCTCGGATTTCCAAA
1 ATTATTTGGACAAACAG-AAAATTGAATCCCAGCACGTTAAGGCACGATTTCTCGAATTTCCAAA
*
76548845 CATAGAACATTGCCTTATTTTGAAGTTTTGAAAACACAGACGAAATTTTAAAGGGATAATTG
65 CATAGAACATTGCCTTGTTTTGAAGTTTTGAAAACACAGACGAAATTTTAAAGGGATAATTG
* *
76548907 GTTATTTGGACAAACAGAAAATTGAATCCCAGCACGTTAAGGCACGATTTCTCGAATTTCTAAAC
1 ATTATTTGGACAAACAGAAAATTGAATCCCAGCACGTTAAGGCACGATTTCTCGAATTTCCAAAC
* * * *
76548972 ATAGAACATTGCCTTGTTTTAAAGTTTTGAAAACACGGACGAAATTTTAAAGGGGTATTTG
66 ATAGAACATTGCCTTGTTTTGAAGTTTTGAAAACACAGACGAAATTTTAAAGGGATAATTG
*
76549033 ATTATTTGGACAAACAGAAAATTGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCCAAAC
1 ATTATTTGGACAAACAGAAAATTGAATCCCAGCACGTTAAGGCACGATTTCTCGAATTTCCAAAC
76549098 ATCA-AACATTGCCTTTGTTTTGAA
66 AT-AGAACATTGCC-TTGTTTTGAA
76549122 AAATTTTCGA
Statistics
Matches: 192, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
126 181 0.94
127 11 0.06
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (126 bp):
ATTATTTGGACAAACAGAAAATTGAATCCCAGCACGTTAAGGCACGATTTCTCGAATTTCCAAAC
ATAGAACATTGCCTTGTTTTGAAGTTTTGAAAACACAGACGAAATTTTAAAGGGATAATTG
Found at i:76554361 original size:36 final size:36
Alignment explanation
Indices: 76554314--76554387 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
76554304 TTAAAAAGAG
76554314 TTAGGATTTTTGGTCATTTGACTACTTTCGCTTATT
1 TTAGGATTTTTGGTCATTTGACTACTTTCGCTTATT
76554350 TTAGGATTTTTGGTCATTTGACTACTTTCGCTTATT
1 TTAGGATTTTTGGTCATTTGACTACTTTCGCTTATT
76554386 TT
1 TT
76554388 GCTTTCTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.54
Consensus pattern (36 bp):
TTAGGATTTTTGGTCATTTGACTACTTTCGCTTATT
Found at i:76554386 original size:18 final size:18
Alignment explanation
Indices: 76554329--76554386 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
76554319 ATTTTTGGTC
76554329 ATTTGACTACTTTCGCTT
1 ATTTGACTACTTTCGCTT
* ** * * * *
76554347 ATTTTAGGATTTTTGGTC
1 ATTTGACTACTTTCGCTT
76554365 ATTTGACTACTTTCGCTT
1 ATTTGACTACTTTCGCTT
76554383 ATTT
1 ATTT
76554387 TGCTTTCTTT
Statistics
Matches: 26, Mismatches: 14, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (18 bp):
ATTTGACTACTTTCGCTT
Done.