Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 232 of 320
Found at i:76815122 original size:18 final size:17
Alignment explanation
Indices: 76815099--76815132 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76815089 ATGCAAATAT
76815099 ATAAAAACAATAAATAAC
1 ATAAAAA-AATAAATAAC
*
76815117 ATAAAAATATAAATAA
1 ATAAAAAAATAAATAA
76815133 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
ATAAAAAAATAAATAAC
Found at i:76815525 original size:7 final size:7
Alignment explanation
Indices: 76815513--76815631 Score: 95
Period size: 7 Copynumber: 16.1 Consensus size: 7
76815503 AATTATACAT
76815513 AATAATA
1 AATAATA
76815520 AATAATA
1 AATAATA
76815527 AATAAT-
1 AATAATA
76815533 AAT-ATA
1 AATAATA
76815539 ATATAATA
1 A-ATAATA
76815547 AATAATAA
1 AATAAT-A
76815555 AATATATA
1 AATA-ATA
76815563 AATAAAATA
1 AAT--AATA
*
76815572 TATAATA
1 AATAATA
76815579 AA-ATATA
1 AATA-ATA
76815586 AATAATA
1 AATAATA
76815593 TAATAA-A
1 -AATAATA
76815600 TAATACATA
1 -AATA-ATA
76815609 AATAA-A
1 AATAATA
76815615 AATAATA
1 AATAATA
76815622 TATATAATA
1 -A-ATAATA
76815631 A
1 A
76815632 TTTTTTACAT
Statistics
Matches: 95, Mismatches: 2, Indels: 29
0.75 0.02 0.23
Matches are distributed among these distances:
5 2 0.02
6 11 0.12
7 41 0.43
8 26 0.27
9 14 0.15
10 1 0.01
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (7 bp):
AATAATA
Found at i:76815587 original size:59 final size:64
Alignment explanation
Indices: 76815514--76815631 Score: 126
Period size: 59 Copynumber: 1.9 Consensus size: 64
76815504 ATTATACATA
* * *
76815514 ATAATAAATAATAAATAATA-ATATAATATAATAAAT-AAT-AAAAT-ATATAAATAA-AATATA
1 ATAATAAATAATAAATAATATA-ATAA-ATAATACATAAATAAAAATAATATATATAATAAAATA
76815574 -
64 T
76815574 -TAATAAAAT-ATAAATAATATAATAAATAATACATAAATAAAAATAATATATATAATAA
1 ATAAT-AAATAATAAATAATATAATAAATAATACATAAATAAAAATAATATATATAATAA
76815632 TTTTTTACAT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
58 8 0.16
59 21 0.42
60 10 0.20
61 9 0.18
62 2 0.04
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (64 bp):
ATAATAAATAATAAATAATATAATAAATAATACATAAATAAAAATAATATATATAATAAAATAT
Found at i:76815713 original size:17 final size:17
Alignment explanation
Indices: 76815502--76815713 Score: 71
Period size: 17 Copynumber: 13.0 Consensus size: 17
76815492 CAAATTTTTA
* *
76815502 AAATTATACATAATAAT
1 AAATTATATATAAAAAT
* * *
76815519 AAATAATAAATAATAAT
1 AAATTATATATAAAAAT
76815536 ATAA-TATA-ATAAATAAT
1 A-AATTATATATAAA-AAT
76815553 AAA--ATATAT--AAAT
1 AAATTATATATAAAAAT
*
76815566 AAAATATATAATAAAATAT
1 AAATTATAT-ATAAAA-AT
76815585 AAA-TA-ATATAATAAAT
1 AAATTATATATAA-AAAT
* *
76815601 -AATACATAAATAAAAAT
1 AAAT-TATATATAAAAAT
*
76815618 -AA-TATATATAATAAT
1 AAATTATATATAAAAAT
*** * *
76815633 TTTTTACATATATAAAT
1 AAATTATATATAAAAAT
* *
76815650 AATTTTTATAGTAAAAAT
1 AAATTATATA-TAAAAAT
* *
76815668 AGATAATATAT-AAAAT
1 AAATTATATATAAAAAT
76815684 --ATT-TA-A-AATAAAT
1 AAATTATATATAA-AAAT
76815697 AAATTATATATAAAAAT
1 AAATTATATATAAAAAT
76815714 TTAAAAAGGA
Statistics
Matches: 148, Mismatches: 24, Indels: 46
0.68 0.11 0.21
Matches are distributed among these distances:
12 2 0.01
13 12 0.08
14 3 0.02
15 22 0.15
16 23 0.16
17 56 0.38
18 25 0.17
19 5 0.03
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (17 bp):
AAATTATATATAAAAAT
Found at i:76815720 original size:29 final size:29
Alignment explanation
Indices: 76815664--76815719 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
76815654 TTTATAGTAA
*
76815664 AAATAGATAATATATAAAATATTTAAAAT
1 AAATAAATAATATATAAAATATTTAAAAT
*
76815693 AAATAAATTATATATAAAA-ATTTAAAA
1 AAATAAATAATATATAAAATATTTAAAA
76815720 AGGATTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (29 bp):
AAATAAATAATATATAAAATATTTAAAAT
Found at i:76817124 original size:15 final size:16
Alignment explanation
Indices: 76817106--76817135 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76817096 TTAAATAAAT
76817106 TATTATTA-TTATTTC
1 TATTATTATTTATTTC
76817121 TATTATTATTTATTT
1 TATTATTATTTATTT
76817136 ATTCATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTATTATTTATTTC
Found at i:76820363 original size:25 final size:26
Alignment explanation
Indices: 76820329--76820379 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
76820319 TAATAACCAA
76820329 AATAAGTATAC-TTTTTTTACTTTTT
1 AATAAGTATACATTTTTTTACTTTTT
76820354 AATAAGTATACATTTTTTTACTTTTT
1 AATAAGTATACATTTTTTTACTTTTT
76820380 TTTAGATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (26 bp):
AATAAGTATACATTTTTTTACTTTTT
Found at i:76821374 original size:6 final size:6
Alignment explanation
Indices: 76821350--76821409 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
76821340 AAAGTCTAGG
* * *
76821350 AAATAC AAATAA ACA-AA AAATAA AAATAA AAATTGAA TAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA-T-AA AAATAA AAATAA
76821399 ATAA-AA AAATA
1 A-AATAA AAATA
76821410 GACTCAATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.14
6 30 0.68
7 4 0.09
8 4 0.09
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:76821376 original size:17 final size:16
Alignment explanation
Indices: 76821350--76821406 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 16
76821340 AAAGTCTAGG
*
76821350 AAATACAAATAAACAAA
1 AAATAAAAATAAA-AAA
76821367 AAATAAAAATAAAAATTGA
1 AAATAAAAATAAAAA---A
76821386 ATAATAAAAATAAATAAA
1 A-AATAAAAATAAA-AAA
76821404 AAA
1 AAA
76821407 ATAGACTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
16 2 0.06
17 14 0.41
18 2 0.06
19 2 0.06
20 12 0.35
21 2 0.06
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.18
Consensus pattern (16 bp):
AAATAAAAATAAAAAA
Found at i:76821391 original size:14 final size:14
Alignment explanation
Indices: 76821364--76821408 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
76821354 ACAAATAAAC
*
76821364 AAAAAATAAA-AAT
1 AAAAATTAAATAAT
*
76821377 AAAAATTGAATAAT
1 AAAAATTAAATAAT
76821391 AAAAA-TAAATAA-
1 AAAAATTAAATAAT
76821403 AAAAAT
1 AAAAAT
76821409 AGACTCAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 5 0.19
13 14 0.52
14 8 0.30
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (14 bp):
AAAAATTAAATAAT
Found at i:76824279 original size:17 final size:17
Alignment explanation
Indices: 76824259--76824306 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
76824249 TTCATAAGTA
76824259 TATATCAATCATTTCGT
1 TATATCAATCATTTCGT
*
76824276 TATATCAATCATTCCGT
1 TATATCAATCATTTCGT
76824293 TATATCAAT-ATTTC
1 TATATCAATCATTTC
76824307 ATGCACCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 4 0.14
17 25 0.86
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (17 bp):
TATATCAATCATTTCGT
Found at i:76824637 original size:46 final size:46
Alignment explanation
Indices: 76824584--76824736 Score: 218
Period size: 46 Copynumber: 3.3 Consensus size: 46
76824574 TTCTATTGTG
* * *
76824584 TCTTTCAACTATGATCTTACTCATTTTCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTA
* *
76824630 TCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTC-TGTCATGTTGCCATGGTA
* **
76824676 TCTTTCAACCATGGTCTTATTCATTTCCCATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTA
76824722 TCTTTCAACCATGGT
1 TCTTTCAACCATGGT
76824737 GGTATCTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
45 4 0.04
46 88 0.93
47 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTA
Found at i:76824741 original size:19 final size:19
Alignment explanation
Indices: 76824717--76824755 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
76824707 CATGTTGCCA
76824717 TGGTATCTTTCAACCATGG
1 TGGTATCTTTCAACCATGG
76824736 TGGTATCTTTCAACCATGG
1 TGGTATCTTTCAACCATGG
76824755 T
1 T
76824756 CTTACACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (19 bp):
TGGTATCTTTCAACCATGG
Found at i:76841654 original size:21 final size:21
Alignment explanation
Indices: 76841629--76841693 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
76841619 TAGCCTTCGG
76841629 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
* *
76841650 GCTTCAG-TTAGC-CTT-TGG
1 GCTTCCGTTTAGCACTTATGT
76841668 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
76841689 GCTTC
1 GCTTC
76841694 AGTTAGACTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
18 8 0.22
19 8 0.22
20 8 0.22
21 13 0.35
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.42
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:76841657 original size:39 final size:39
Alignment explanation
Indices: 76841611--76841711 Score: 184
Period size: 39 Copynumber: 2.6 Consensus size: 39
76841601 GCTCTGGTGA
76841611 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
76841650 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
76841689 GCTTCAGTTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
76841712 AGATCACGAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.13, C:0.25, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:76841712 original size:18 final size:18
Alignment explanation
Indices: 76841611--76841713 Score: 80
Period size: 18 Copynumber: 5.4 Consensus size: 18
76841601 GCTCTGGTGA
* *
76841611 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTTGG
* *
76841629 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-TGG
*
76841650 GCTTCAGTTAGCCTTTGG
1 GCTTCAGTTAGACTTTGG
* *
76841668 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-TGG
*
76841689 GCTTCAGTTAGACTTCGG
1 GCTTCAGTTAGACTTTGG
76841707 GCTTCAG
1 GCTTCAG
76841714 ATCACGATGT
Statistics
Matches: 66, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
18 22 0.33
19 15 0.23
20 14 0.21
21 15 0.23
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (18 bp):
GCTTCAGTTAGACTTTGG
Found at i:76846869 original size:27 final size:26
Alignment explanation
Indices: 76846839--76846940 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 26
76846829 ATTACCAAAG
*
76846839 TACCCTCGATTTACAGAATTGTTGTT
1 TACCCTCGATTTACAGAATTATTGTT
**
76846865 CTACCCTCGATTTGTAGAATTACCTT-TT
1 -TACCCTCGATTTACAGAATTA--TTGTT
* * *
76846893 TATCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATTG-TT
*
76846920 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
76846941 ATAAAATACC
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
25 1 0.02
27 57 0.92
28 2 0.03
29 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTATTGTT
Found at i:76846950 original size:27 final size:27
Alignment explanation
Indices: 76846920--76847279 Score: 122
Period size: 27 Copynumber: 13.2 Consensus size: 27
76846910 ATTATCGTTT
* *
76846920 TACCCTCGATTTACAAAATTAATAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
76846947 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
76846974 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
76847002 TACCCTCGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTAAAA
** ****
76847030 TACCCTCGATTTATAGCATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * ****
76847057 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * *****
76847084 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
76847111 TACCCTCGA-TTGTGAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *** * *
76847137 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGAT-TTATAAAATTACTAAAA
* * * *
76847164 CACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * *
76847191 CACCC-CTGATTTACAAAATTACAAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
76847218 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAT-AAAATTACTA-AAA
* * * *
76847247 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
76847274 TACCCT
1 TACCCT
76847280 TGGTTTGTAG
Statistics
Matches: 261, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 18 0.07
27 165 0.63
28 58 0.22
29 18 0.07
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:76846989 original size:28 final size:28
Alignment explanation
Indices: 76846934--76847034 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
76846924 CTCGATTTAC
* *
76846934 AAAATTAATAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
76846961 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* * *
76846989 AAAATTACTGAAATACCCTC-GACTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* *
76847016 AAAAATTACCAAAGTACCC
1 -AAAATTACTAAAATACCC
76847035 TCGATTTATA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 20 0.31
28 44 0.69
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:76847041 original size:55 final size:54
Alignment explanation
Indices: 76846920--76847042 Score: 131
Period size: 55 Copynumber: 2.2 Consensus size: 54
76846910 ATTATCGTTT
** *
76846920 TACCCTCGATTTACAAAATTAATAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTAATAAAATACCCCTGACTTGTAAAATTACCAAAA
* ** * * *
76846974 TACCCCCTGATTTGTAAAATTACTGAAATA-CCCTCGACTTGTAAAAATTACCAAAG
1 TACCCTC-GATTTACAAAATTAATAAAATACCCCT-GACTTGT-AAAATTACCAAAA
76847030 TACCCTCGATTTA
1 TACCCTCGATTTA
76847043 TAGCATTACT
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
54 10 0.18
55 28 0.51
56 17 0.31
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTAATAAAATACCCCTGACTTGTAAAATTACCAAAA
Found at i:76847369 original size:27 final size:27
Alignment explanation
Indices: 76847326--76847399 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
76847316 AAATGACTAA
*
76847326 AATACCCTTAATA-GGTAAAAAGACCGC
1 AATACCCTT-GTAGGGTAAAAAGACCGC
** *
76847353 AA-AGCCCTTGTAGGGTAAAGTGACCGT
1 AATA-CCCTTGTAGGGTAAAAAGACCGC
*
76847380 AATACCCTTGTATGGTAAAA
1 AATACCCTTGTAGGGTAAAA
76847400 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAAAAAGACCGC
Found at i:76848128 original size:20 final size:21
Alignment explanation
Indices: 76848093--76848187 Score: 121
Period size: 20 Copynumber: 4.8 Consensus size: 21
76848083 TGATACGTAG
76848093 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
*
76848111 GATATGATATACACATGAT-T
1 GATATGATATGCACATGATAT
76848131 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
76848152 G-TATGAAATGCACATGATAT
1 GATATGATATGCACATGATAT
*
76848172 G-TATGAAATGCACATG
1 GATATGATATGCACATG
76848188 TTGTATTCAT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
18 10 0.14
20 60 0.83
21 2 0.03
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:76848148 original size:11 final size:11
Alignment explanation
Indices: 76848114--76848172 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
76848104 CATGATTGAT
*
76848114 ATGATATACAC
1 ATGATATGCAC
*
76848125 ATGAT-TG-AT
1 ATGATATGCAC
76848134 ATGATATGCAC
1 ATGATATGCAC
*
76848145 ATGATATG--T
1 ATGATATGCAC
*
76848154 ATGAAATGCAC
1 ATGATATGCAC
76848165 ATGATATG
1 ATGATATG
76848173 TATGAAATGC
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
9 13 0.35
10 3 0.08
11 21 0.57
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:76848336 original size:25 final size:26
Alignment explanation
Indices: 76848239--76848361 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
76848229 GAGGAAGTGC
*
76848239 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76848265 AAAAGGGCTTATGCCCCAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76848291 AAAATGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76848317 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76848342 AAAAGGGCTT-TGTCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76848362 ATTAAAAGAG
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.37
26 57 0.63
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:76848572 original size:42 final size:42
Alignment explanation
Indices: 76848507--76848598 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
76848497 TAGTCTCCCC
* * * *
76848507 AAATGGGCTTGCATACGTTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGATATTACATATGATATTG
*
76848549 AAATGGGCTTGCATACATCCATTGATATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGATATTACATATGATATTG
76848591 AAATGGGC
1 AAATGGGC
76848599 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGATATTACATATGATATTG
Found at i:76848660 original size:31 final size:31
Alignment explanation
Indices: 76848622--76848731 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
76848612 CGTTTACAGT
* * *
76848622 AAAGGCTTCAGCCCAGAGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76848653 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
76848684 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76848715 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
76848732 AACCGTTAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:76851022 original size:27 final size:27
Alignment explanation
Indices: 76850990--76851469 Score: 172
Period size: 27 Copynumber: 17.7 Consensus size: 27
76850980 TTAGTTTACC
* * * *
76850990 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* ***
76851017 GAATTACTATTCTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* * *** *
76851044 GAATTACCATTTTACCCTTGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* **** *
76851071 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* *
76851098 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
*
76851125 AAATTACTAAAATATCCC-CTGATTTGTA
1 AAATTACTAAAATA-CCCTC-GATTTATA
76851153 AAATTACTAAAATACCCTCGACTTGTA-A
1 AAATTACTAAAATACCCTCGA-TT-TATA
* * *
76851181 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* **** * *
76851208 GAATTACTGGTTTACCCTTGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
***** * *
76851235 AAATTACCGTTTTACCCTCGA-TTGTG
1 AAATTACTAAAATACCCTCGATTTATA
* * *
76851261 AAATTACTGAAATACCC-CTA-TAAGGTA
1 AAATTACTAAAATACCCTCGATTTA--TA
* * * * *
76851288 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTATA
* * * * *
76851315 AAATTACCAAAATATCACT-GGTTTGTG
1 AAATTACTAAAATA-CCCTCGATTTATA
** * *
76851342 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
76851369 AAATTACCAAAATATCCCT-GATTTACA
1 AAATTACTAAAATA-CCCTCGATTTATA
* *
76851396 AAATTAC-AGAAATACCCTTGACTTTCTAA
1 AAATTACTA-AAATACCCTCGA-TTTAT-A
* * * *
76851425 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACTA-AAATACCCTCGATTTATA
76851452 AAATTACTAAAATACCCT
1 AAATTACTAAAATACCCT
76851470 TGGTTTGTAG
Statistics
Matches: 357, Mismatches: 76, Indels: 40
0.75 0.16 0.08
Matches are distributed among these distances:
25 3 0.01
26 26 0.07
27 244 0.68
28 63 0.18
29 21 0.06
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTATA
Found at i:76851204 original size:55 final size:54
Alignment explanation
Indices: 76851083--76851215 Score: 153
Period size: 55 Copynumber: 2.4 Consensus size: 54
76851073 ATTACTGTTT
** *
76851083 TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAAAA
** *
76851137 TATCCC-CTGATTTGTAAAATTACTAAAATA-CCCTCGACTTGTAAAAATTACCAAAG
1 TA-CCCTC-GATTTACAAAATTACTAAAATACCCCT-GACTTGT-AAAATTACCAAAA
*
76851193 TACCCTCGATTTACAGAATTACT
1 TACCCTCGATTTACAAAATTACT
76851216 GGTTTACCCT
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
54 7 0.11
55 44 0.68
56 14 0.22
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAAAA
Found at i:76851472 original size:27 final size:28
Alignment explanation
Indices: 76851424--76851475 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
76851414 TGACTTTCTA
*
76851424 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACTAGAAATACCCTTGGTTTAC
76851451 AAAATTACTA-AAATACCCTTGGTTT
1 AAAATTACTAGAAATACCCTTGGTTT
76851476 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (28 bp):
AAAATTACTAGAAATACCCTTGGTTTAC
Found at i:76851567 original size:27 final size:27
Alignment explanation
Indices: 76851537--76851588 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
76851527 TAGGTAAAAA
76851537 GACCGTAA-AGCCCTTGTAGGGTAAAGT
1 GACCGTAATA-CCCTTGTAGGGTAAAGT
*
76851564 GACCGTAATACCCTTGTATGGTAAA
1 GACCGTAATACCCTTGTAGGGTAAA
76851589 ATGATGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (27 bp):
GACCGTAATACCCTTGTAGGGTAAAGT
Found at i:76852318 original size:20 final size:20
Alignment explanation
Indices: 76852293--76852359 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
76852283 GATATGATAT
*
76852293 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
76852313 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
76852333 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
76852353 ACATGAT
1 ACATGAT
76852360 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:76852508 original size:25 final size:26
Alignment explanation
Indices: 76852409--76852544 Score: 208
Period size: 26 Copynumber: 5.3 Consensus size: 26
76852399 GAGGAAGTGC
76852409 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76852435 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76852461 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
76852487 AAAAGGGCTT-TGCCCCAATTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76852512 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
76852535 AAAAGAGGCT
1 AAAAG-GGCT
76852545 AGGCCTCCAT
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 30 0.29
26 60 0.58
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76852744 original size:42 final size:42
Alignment explanation
Indices: 76852679--76852770 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
76852669 TAGTCTCCCC
* * ** *
76852679 AAATGGGCTTGCATACGTTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
76852721 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
76852763 AAATGGGC
1 AAATGGGC
76852771 CTATAAGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:76852832 original size:31 final size:31
Alignment explanation
Indices: 76852794--76852903 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
76852784 CGTTTACAGT
* *
76852794 AAAGGCTTCGGCCCAGAGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76852825 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
76852856 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76852887 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
76852904 AACTGCTAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:76855093 original size:46 final size:45
Alignment explanation
Indices: 76855040--76855215 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
76855030 TATTTGGGCA
*
76855040 TCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * *
76855086 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAGTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--ACG
*
76855131 AATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-AACG
* * * * *
76855179 CCCGAGCTCTTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76855216 GTGGGTCACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 61 0.56
47 28 0.26
48 4 0.04
49 1 0.01
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:76855116 original size:20 final size:20
Alignment explanation
Indices: 76855093--76855161 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 20
76855083 ACGTCCGAAC
76855093 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
*
76855113 TCG-TGAGATGTAAGTAGGAATCCGAGC
1 TCGTTGAG-T-T--G-A-G--TCCGAGT
76855140 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
76855160 TC
1 TC
76855162 ACTTATGGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
19 4 0.11
20 12 0.32
21 1 0.03
22 1 0.03
23 2 0.05
24 2 0.05
25 1 0.03
26 1 0.03
27 10 0.26
28 4 0.11
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (20 bp):
TCGTTGAGTTGAGTCCGAGT
Found at i:76855198 original size:93 final size:93
Alignment explanation
Indices: 76855039--76855208 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
76855029 ATATTTGGGC
*
76855039 ATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
76855104 AGTCCGAGTTCGTGAGATGTAAGTAGGA
66 AGTCCGAGTTCGTGAGATGTAAGTAGGA
* * * *
76855132 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGAACGCCCGAGCTCTTTGAGTT
1 ATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCA-AACGCCCGAACTCGTTGAGTT
*
76855196 GAGTCTGAGTTCG
65 GAGTCCGAGTTCG
76855209 CTTATGGGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAAGTAGGA
Found at i:76858771 original size:15 final size:15
Alignment explanation
Indices: 76858729--76858772 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
76858719 CATAGTATCG
*
76858729 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
76858744 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTC
76858759 TATCTTGGATTTCT
1 TATCTTGGATTTCT
76858773 TTATTCGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:76871818 original size:44 final size:44
Alignment explanation
Indices: 76871768--76872087 Score: 230
Period size: 44 Copynumber: 7.3 Consensus size: 44
76871758 CAAAGAAACA
76871768 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * **
76871812 AGATTTGACATTCC-TGTACTTACAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCA-TCCTTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
76871857 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* **
76871900 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
1 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
76871944 AGATCTGGCA-CTCTTGTGCTTACAGCGAAGCAGATCGAGGATTTC
1 AGATTTGGCATC-CTTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
76871989 AGCA--TGGCAT-CTCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCT-TGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * * * *
76872032 AGATTTGGCATCTCTATAT-TGT-CAGAGATCACATCGAAGATAGC
1 AGATTTGGCATC-CT-TGTGTTTATAGGGAACAGATCGAAGATAGC
76872076 AGATTTGGCATC
1 AGATTTGGCATC
76872088 TCTGTATTGG
Statistics
Matches: 216, Mismatches: 41, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
42 4 0.02
43 29 0.13
44 142 0.66
45 35 0.16
46 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:76872005 original size:132 final size:132
Alignment explanation
Indices: 76871768--76872043 Score: 462
Period size: 132 Copynumber: 2.1 Consensus size: 132
76871758 CAAAGAAACA
* * * *
76871768 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGACATTCCTGTACTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTACTT
76871833 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
76871898 GC
131 GC
* * * *
76871900 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAATAGATCTGGCACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTACTT
* *
76871965 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
76872030 GC
131 GC
76872032 AGATTTGGCATC
1 AGATTTGGCATC
76872044 TCTATATTGT
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 134 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTACTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:76872085 original size:132 final size:132
Alignment explanation
Indices: 76871768--76872115 Score: 425
Period size: 132 Copynumber: 2.6 Consensus size: 132
76871758 CAAAGAAACA
* * * * * * * * *
76871768 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGACATTCCTGTACTT
1 AGATTTGGCATCCCTATATTTACAGAGAACACATCGAAGATAGCAGATTTGGCACTCTTGTACTT
76871833 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
76871898 GC
131 GC
* * * * * ** * *
76871900 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAATAGATCTGGCACTCTTGTGCTT
1 AGATTTGGCATCCCTATATTTACAGAGAACACATCGAAGATAGCAGATTTGGCACTCTTGTACTT
* *
76871965 ACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
76872030 GC
131 GC
* *
76872032 AGATTTGGCATCTCTATATTGT-CAGAGATCACATCGAAGATAGCAGATTTGGCA-TCTCTGTA-
1 AGATTTGGCATCCCTATATT-TACAGAGAACACATCGAAGATAGCAGATTTGGCACTCT-TGTAC
* *
76872094 TTGGCAGAG-AGCAGATCGAAGA
64 TT-ACAGCGAAGCAGATCGAAGA
76872116 CATAGCTGAT
Statistics
Matches: 189, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
131 17 0.09
132 171 0.90
133 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTATATTTACAGAGAACACATCGAAGATAGCAGATTTGGCACTCTTGTACTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:76872088 original size:44 final size:44
Alignment explanation
Indices: 76872023--76872130 Score: 153
Period size: 44 Copynumber: 2.4 Consensus size: 44
76872013 GGAACAAGTT
* *
76872023 GAAGATAGCAGATTTGGCATCTCTATATTGTCAGAGATCACATC
1 GAAGATAGCAGATTTGGCATCTCTATATTGGCAGAGAGCACATC
* *
76872067 GAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
1 GAAGATAGCAGATTTGGCATCTCTATATTGGCAGAGAGCACATC
*
76872111 GAAGACATAGCTGATTTGGC
1 GAAG--ATAGCAGATTTGGC
76872131 TTTCACCTGT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 44 0.77
46 13 0.23
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
GAAGATAGCAGATTTGGCATCTCTATATTGGCAGAGAGCACATC
Found at i:76872531 original size:44 final size:45
Alignment explanation
Indices: 76872480--76872578 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
76872470 GAGTTTGCAA
* * * * * *
76872480 GGAGCAGATTGAAGA-AGCAAATTTGGCGTCTTTGTATTAGACGG
1 GGAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTATTAAACAG
*
76872524 GGAGCAGATCGAAAATAACAGATTTGGCGTCTCTGTATTAAACAG
1 GGAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTATTAAACAG
76872569 GGAGCAGATC
1 GGAGCAGATC
76872579 AAAGATAGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 13 0.28
45 34 0.72
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.24
Consensus pattern (45 bp):
GGAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTATTAAACAG
Found at i:76872970 original size:19 final size:19
Alignment explanation
Indices: 76872946--76873057 Score: 138
Period size: 19 Copynumber: 5.8 Consensus size: 19
76872936 AATCTTTAAG
*
76872946 GATATGCAATCTTAGATAC
1 GATATGCAATCTTAGATAT
76872965 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76872984 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
76873001 GACATGCAATCTTGGATAT
1 GATATGCAATCTTAGATAT
76873020 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
76873041 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
76873058 GATTTAATTT
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
17 16 0.20
19 46 0.57
20 3 0.04
21 8 0.10
22 8 0.10
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:76872982 original size:14 final size:15
Alignment explanation
Indices: 76872965--76873004 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
76872955 TCTTAGATAC
76872965 GATATG-CAATCTTA
1 GATATGACAATCTTA
76872979 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
76872996 GATATGACA
1 GATATGACA
76873005 TGCAATCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 3 0.13
17 14 0.61
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:76872992 original size:36 final size:37
Alignment explanation
Indices: 76872946--76873032 Score: 122
Period size: 36 Copynumber: 2.3 Consensus size: 37
76872936 AATCTTTAAG
*
76872946 GATATGCAATCTTAGATACGATATGCAATCTTAGATAT
1 GATA-GCAATCTTAGATACGACATGCAATCTTAGATAT
* *
76872984 GATA-CAATCTTAGATATGACATGCAATCTTGGATAT
1 GATAGCAATCTTAGATACGACATGCAATCTTAGATAT
76873020 GATATGCAATCTT
1 GATA-GCAATCTT
76873033 GAAGATATGA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 33 0.75
38 11 0.25
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (37 bp):
GATAGCAATCTTAGATACGACATGCAATCTTAGATAT
Found at i:76873456 original size:16 final size:15
Alignment explanation
Indices: 76873428--76873476 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
76873418 TCTATGCATG
76873428 TATATAT-ATTATAT
1 TATATATCATTATAT
76873442 TATATATCATGTATAT
1 TATATATCAT-TATAT
* *
76873458 TGTATATCA-TCTAT
1 TATATATCATTATAT
76873472 TATAT
1 TATAT
76873477 TATTTATGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 15 0.50
15 2 0.07
16 13 0.43
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (15 bp):
TATATATCATTATAT
Found at i:76875977 original size:46 final size:46
Alignment explanation
Indices: 76875925--76876087 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
76875915 TATTTGGGCA
*
76875925 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* *
76875971 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAAGTAAGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGT--G-AA-CG
* *
76876018 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* *
76876064 CCCGAGA-TCATTGAGTTGAGTCCG
1 TCCGA-ACTCGTTGAGTTGAGTCCG
76876088 GGTCCGCTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
45 2 0.02
46 48 0.49
47 28 0.29
48 2 0.02
50 4 0.04
51 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:76878192 original size:54 final size:54
Alignment explanation
Indices: 76878122--76878231 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
76878112 TATAAGGAAG
*
76878122 AATAAGTTCTCGTAATGAATTAGCCGAAATTAAAAATTGTAAAATAATAATTAT
1 AATAAGTTCTCATAATGAATTAGCCGAAATTAAAAATTGTAAAATAATAATTAT
76878176 AATAAGTTCTCATAATGAATTAGCCGAAATTAAAAATTGTAAAATAATAATTAT
1 AATAAGTTCTCATAATGAATTAGCCGAAATTAAAAATTGTAAAATAATAATTAT
76878230 AA
1 AA
76878232 AACCTAATAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (54 bp):
AATAAGTTCTCATAATGAATTAGCCGAAATTAAAAATTGTAAAATAATAATTAT
Found at i:76888863 original size:13 final size:13
Alignment explanation
Indices: 76888845--76888884 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
76888835 GCTCAGCAGG
*
76888845 GACACGCCTGTGT
1 GACACGCCCGTGT
76888858 GACACGCCCGTGT
1 GACACGCCCGTGT
*
76888871 GACACGCCCATGT
1 GACACGCCCGTGT
76888884 G
1 G
76888885 CAATTGCTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.35, G:0.30, T:0.17
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:76907774 original size:28 final size:29
Alignment explanation
Indices: 76907713--76907788 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
76907703 AAATTTTAAA
*
76907713 TTAATAATGATAAAATTACACTTTAGCCTT
1 TTAA-AATGATAAAATTACACTTTAACCTT
*
76907743 TTAAAATGATAAAATCTA-A-TTTAATCTT
1 TTAAAATGATAAAAT-TACACTTTAACCTT
*
76907771 TTAAAAATTATAAAATTA
1 TT-AAAATGATAAAATTA
76907789 TAGACTATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 11 0.27
29 24 0.59
30 6 0.15
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (29 bp):
TTAAAATGATAAAATTACACTTTAACCTT
Found at i:76908362 original size:30 final size:30
Alignment explanation
Indices: 76908319--76908377 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
76908309 CTTAACAAGC
*
76908319 AAATGCCTCTAAAATAATAATAAAATTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
* * *
76908349 AAATTCCTTTAAAATAATAACAAATTTAA
1 AAATGCCTCTAAAATAATAACAAAATTAA
76908378 CAATAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.32
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:76908435 original size:22 final size:22
Alignment explanation
Indices: 76908410--76908452 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
76908400 TATCCAAACT
76908410 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* *
76908432 ATAATAGTAAAATAGTAGCAA
1 ATAACAATAAAATAGTAGCAA
76908453 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:76908456 original size:11 final size:11
Alignment explanation
Indices: 76908418--76908457 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
76908408 CTATAACAAT
76908418 AAAATAGTAGC
1 AAAATAGTAGC
* * *
76908429 AACATAATAGT
1 AAAATAGTAGC
76908440 AAAATAGTAGC
1 AAAATAGTAGC
76908451 AAAATAG
1 AAAATAG
76908458 GGAGAAAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.20
Consensus pattern (11 bp):
AAAATAGTAGC
Found at i:76908954 original size:19 final size:20
Alignment explanation
Indices: 76908930--76908974 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
76908920 ATTTTATAAA
76908930 TATTTTAAAGTT-TAAAAAT
1 TATTTTAAAGTTCTAAAAAT
* * *
76908949 TATTTTGAATTTCTGAAAAT
1 TATTTTAAAGTTCTAAAAAT
76908969 TATTTT
1 TATTTT
76908975 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (20 bp):
TATTTTAAAGTTCTAAAAAT
Found at i:76911543 original size:18 final size:17
Alignment explanation
Indices: 76911501--76911564 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 17
76911491 TCACCAGAAC
* *
76911501 AGCTCACCAAGAACTACC
1 AGCTCACCAA-AATTACG
*
76911519 AGTTCACCAAAATATACG
1 AGCTCACCAAAAT-TACG
* *
76911537 AGCTCACCAACATTGCG
1 AGCTCACCAAAATTACG
76911554 AGCTCACCAAA
1 AGCTCACCAAA
76911565 GCATGAGAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
17 15 0.39
18 23 0.61
ACGTcount: A:0.39, C:0.33, G:0.12, T:0.16
Consensus pattern (17 bp):
AGCTCACCAAAATTACG
Found at i:76911609 original size:29 final size:30
Alignment explanation
Indices: 76911550--76911613 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 30
76911540 TCACCAACAT
76911550 TGCGAGCTCACCAAAGCATGAGAGTTCACC
1 TGCGAGCTCACCAAAGCATGAGAGTTCACC
76911580 TGCGAGCTCACC-AAGCATGAGAGCTT-ACC
1 TGCGAGCTCACCAAAGCATGAGAG-TTCACC
76911609 TGCGA
1 TGCGA
76911614 ACTCTTCACT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 19 0.58
30 14 0.42
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.17
Consensus pattern (30 bp):
TGCGAGCTCACCAAAGCATGAGAGTTCACC
Found at i:76918510 original size:53 final size:55
Alignment explanation
Indices: 76918440--76918553 Score: 151
Period size: 57 Copynumber: 2.1 Consensus size: 55
76918430 GGGCTCACCC
* *
76918440 CAAATTCACTTCCTAG-TT-CTATACCTCATAATGATGTATTTTCACTCTGTATA
1 CAAACTCACTTCCTAGTTTACTATACCTCATAATGATGTATTTTCACTCTCTATA
* * *
76918493 CAAACTCACTTCTTAGTTCTTACTATACCTCATAATGGTGTGTTTTCACTCTCTATA
1 CAAACTCACTTCCTAG-T-TTACTATACCTCATAATGATGTATTTTCACTCTCTATA
76918550 CAAA
1 CAAA
76918554 TTTAGACTAC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 14 0.27
56 2 0.04
57 36 0.69
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (55 bp):
CAAACTCACTTCCTAGTTTACTATACCTCATAATGATGTATTTTCACTCTCTATA
Found at i:76923214 original size:46 final size:46
Alignment explanation
Indices: 76923154--76923473 Score: 489
Period size: 46 Copynumber: 7.0 Consensus size: 46
76923144 TTTGACATGA
* * * * * *
76923154 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
76923200 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76923246 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
76923292 TGCCATGGTATCTTTCAACCATGGCCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
76923338 TGCCATGGTATCTTTCAACCATGGCCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
76923384 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
76923430 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
76923474 AGAGCACACT
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 252 0.98
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:76926425 original size:20 final size:21
Alignment explanation
Indices: 76926402--76926441 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76926392 TGAACTATCA
*
76926402 TTTTAA-TATTTTTAAAATTT
1 TTTTAATTATTTTAAAAATTT
76926422 TTTTAATTATTTTAAAAATT
1 TTTTAATTATTTTAAAAATT
76926442 ACTTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTAATTATTTTAAAAATTT
Found at i:76933574 original size:51 final size:51
Alignment explanation
Indices: 76933498--76933600 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
76933488 GAGACAAAAG
76933498 TAAATTCAAAATTACGCAATTTTCAAAAGTTCCAATTTCTTTCATCTCATT
1 TAAATTCAAAATTACGCAATTTTCAAAAGTTCCAATTTCTTTCATCTCATT
** * * *
76933549 TAAATTCAAAATTTTGCATTTTTCAAAAGTTTCATTTTCTTTCATCTCATT
1 TAAATTCAAAATTACGCAATTTTCAAAAGTTCCAATTTCTTTCATCTCATT
76933600 T
1 T
76933601 TTCAACTCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.32, C:0.17, G:0.04, T:0.47
Consensus pattern (51 bp):
TAAATTCAAAATTACGCAATTTTCAAAAGTTCCAATTTCTTTCATCTCATT
Found at i:76933586 original size:16 final size:17
Alignment explanation
Indices: 76933553--76933586 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
76933543 CTCATTTAAA
*
76933553 TTCAAAATTTTGCATTT
1 TTCAAAAGTTTGCATTT
76933570 TTCAAAAGTTT-CATTT
1 TTCAAAAGTTTGCATTT
76933586 T
1 T
76933587 CTTTCATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
TTCAAAAGTTTGCATTT
Found at i:76936140 original size:39 final size:39
Alignment explanation
Indices: 76936086--76936165 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
76936076 TATAATTTTA
* *
76936086 ATCATTTATATGCAACAGATGTTTTTGACGAAGAAAACT
1 ATCATTGATATGCAACAGATGTTTTTGACGAACAAAACT
*
76936125 ATCATTGATATGCAACTGATGTTTTTGACGAACAAAACT
1 ATCATTGATATGCAACAGATGTTTTTGACGAACAAAACT
76936164 AT
1 AT
76936166 GTAATCTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (39 bp):
ATCATTGATATGCAACAGATGTTTTTGACGAACAAAACT
Found at i:76939398 original size:20 final size:21
Alignment explanation
Indices: 76939373--76939412 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
76939363 TATCATCCCT
*
76939373 TAAAATTTTA-ATAAAAAATC
1 TAAAATATTACATAAAAAATC
*
76939393 TAAAATATTACATTAAAAAT
1 TAAAATATTACATAAAAAAT
76939413 ATTTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATATTACATAAAAAATC
Found at i:76940713 original size:15 final size:15
Alignment explanation
Indices: 76940686--76940723 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
76940676 ACATGAAATT
76940686 TATTTATTAAAATAA
1 TATTTATTAAAATAA
76940701 TATTT-TTATAAATAA
1 TATTTATTA-AAATAA
*
76940716 TATATATT
1 TATTTATT
76940724 TTAAAAATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 15 0.75
16 2 0.10
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTATTAAAATAA
Found at i:76942897 original size:13 final size:12
Alignment explanation
Indices: 76942869--76942929 Score: 52
Period size: 13 Copynumber: 5.0 Consensus size: 12
76942859 GTTCGTCTCC
*
76942869 TTCTTTCTTCTT
1 TTCTTTCTTTTT
76942881 TTCTTTCCTTTTT
1 TTCTTT-CTTTTT
*
76942894 TTCTTT-TCTTT
1 TTCTTTCTTTTT
* *
76942905 GTGTTTCATTTTT
1 TTCTTTC-TTTTT
*
76942918 ATCTTTCTTTTT
1 TTCTTTCTTTTT
76942930 CTTTACTTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
11 8 0.21
12 11 0.28
13 20 0.51
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.75
Consensus pattern (12 bp):
TTCTTTCTTTTT
Found at i:76942899 original size:18 final size:20
Alignment explanation
Indices: 76942866--76942904 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
76942856 GTTGTTCGTC
76942866 TCCTTCTTTCTTCTTTTCTT
1 TCCTTCTTTCTTCTTTTCTT
76942886 TCCTT-TTT-TTCTTTTCTT
1 TCCTTCTTTCTTCTTTTCTT
76942904 T
1 T
76942905 GTGTTTCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.58
19 3 0.16
20 5 0.26
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (20 bp):
TCCTTCTTTCTTCTTTTCTT
Found at i:76942904 original size:23 final size:22
Alignment explanation
Indices: 76942876--76942933 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
76942866 TCCTTCTTTC
* *
76942876 TTCTTTTCTTTCCTTTTTTTCTT
1 TTCTTTTCTTTCATTTTTATC-T
*
76942899 TTCTTTGTGTTTCATTTTTATCT
1 TTCTTT-TCTTTCATTTTTATCT
76942922 TTCTTTTTCTTT
1 TTC-TTTTCTTT
76942934 ACTTATTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.76
Consensus pattern (22 bp):
TTCTTTTCTTTCATTTTTATCT
Found at i:76943062 original size:27 final size:29
Alignment explanation
Indices: 76943014--76943069 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
76943004 AGGCATATTA
**
76943014 TAATATATATATTTTAACTTTA-ATTTAT
1 TAATATATATATAATAACTTTACATTTAT
*
76943042 TAATA-ATATATAATAATTTTACATTTAT
1 TAATATATATATAATAACTTTACATTTAT
76943070 GTCGCCTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (29 bp):
TAATATATATATAATAACTTTACATTTAT
Found at i:76947339 original size:32 final size:33
Alignment explanation
Indices: 76947260--76947343 Score: 118
Period size: 32 Copynumber: 2.6 Consensus size: 33
76947250 TGGACCAAAA
* * *
76947260 AAAACCAAGTTCAAGCACTAGATTTGCACCAAG
1 AAAACCAAGTTCAAGTACTTGATTAGCACCAAG
76947293 -AAACCAAGTTCAAGTACTTGATTAG-ACCAAG
1 AAAACCAAGTTCAAGTACTTGATTAGCACCAAG
*
76947324 AAAATCAAGTTCAAGTACTT
1 AAAACCAAGTTCAAGTACTT
76947344 AATTGAACCC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
31 6 0.13
32 40 0.87
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (33 bp):
AAAACCAAGTTCAAGTACTTGATTAGCACCAAG
Found at i:76953794 original size:24 final size:25
Alignment explanation
Indices: 76953767--76953816 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
76953757 TTCCGCCCAA
76953767 ATTT-AATTTAAATAATAAAAT-TAT
1 ATTTAAATTT-AATAATAAAATATAT
*
76953791 ATTTAAATTTAATTATAAAATATAT
1 ATTTAAATTTAATAATAAAATATAT
76953816 A
1 A
76953817 AAAGAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTTAAATTTAATAATAAAATATAT
Found at i:76956752 original size:25 final size:24
Alignment explanation
Indices: 76956707--76956753 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
76956697 CGTCCCAAGA
* *
76956707 CAAAAATAAAAACACATCCAAACC
1 CAAAAATAAAAACAAAACCAAACC
*
76956731 CAAAAATCAACAACAAAACCAAA
1 CAAAAAT-AAAAACAAAACCAAA
76956754 AGTCCAAAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.66, C:0.28, G:0.00, T:0.06
Consensus pattern (24 bp):
CAAAAATAAAAACAAAACCAAACC
Found at i:76960121 original size:2 final size:2
Alignment explanation
Indices: 76960114--76960180 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
76960104 CATTACCAAA
76960114 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
76960156 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
76960181 TATATAAACA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:76971058 original size:46 final size:46
Alignment explanation
Indices: 76971005--76971140 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
76970995 AGTGTGCTAT
76971005 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
76971051 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
76971097 ATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76971141 TCATGCCAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
45 1 0.01
46 83 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76974551 original size:14 final size:15
Alignment explanation
Indices: 76974514--76974555 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
76974504 AAATATGAAC
76974514 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
76974530 TATA-ATGTGATA-G
1 TATATATGTGAAATG
76974543 TATATATGTGAAA
1 TATATATGTGAAA
76974556 GCCGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:76974793 original size:41 final size:43
Alignment explanation
Indices: 76974695--76974841 Score: 167
Period size: 41 Copynumber: 3.4 Consensus size: 43
76974685 TGTTCTCCTA
* * *
76974695 TAAGACCACGTCTGGGAC-GTTGGCATCGATATATGTGATTATGTG
1 TAAGACCATGTCTGGGACAG-TAGCATCG--ATATGTGATTACGTG
*
76974740 TAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGATT-CGTG
1 TAAGACCATGTCTGGGACAGT-AGCATCGATATGTGATTACGTG
* * *
76974781 TAAGACCTTGTCTGGGACAGTGGCATCGATATGTGATTACATG
1 TAAGACCATGTCTGGGACAGTAGCATCGATATGTGATTACGTG
76974824 TAAGACCATGTCTGGGAC
1 TAAGACCATGTCTGGGAC
76974842 GTTGGCATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
41 27 0.31
42 17 0.19
43 20 0.23
44 1 0.01
45 23 0.26
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGTAGCATCGATATGTGATTACGTG
Found at i:76980435 original size:7 final size:6
Alignment explanation
Indices: 76980410--76980464 Score: 67
Period size: 6 Copynumber: 9.3 Consensus size: 6
76980400 ATTGAGTCCA
* * *
76980410 TTTA-T TTTATT TTTATT TTTAGT TTTATT TCTATT TTTATG TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
76980457 GTTATT TT
1 TTTATT TT
76980465 ATTAGACTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
5 4 0.10
6 37 0.90
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:76980437 original size:18 final size:17
Alignment explanation
Indices: 76980410--76980464 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 17
76980400 ATTGAGTCCA
76980410 TTTATTTTATTTTTATT
1 TTTATTTTATTTTTATT
*
76980427 TTTAGTTTTATTTCTATT
1 TTTA-TTTTATTTTTATT
*
76980445 TTTATGTTTATTGTTATT
1 TTTAT-TTTATTTTTATT
76980463 TT
1 TT
76980465 ATTAGACTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.76
Consensus pattern (17 bp):
TTTATTTTATTTTTATT
Found at i:76981901 original size:31 final size:31
Alignment explanation
Indices: 76981837--76981914 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
76981827 CTCAACATAT
* * *
76981837 ACTGGGCTGAAGCC-TTTCATAATTTACAAC
1 ACTGGGCCGAAGCCTTTTCAAAATTCACAAC
76981867 ACTGGGCCGAAGCCTTTTCAAAATTCA-AATC
1 ACTGGGCCGAAGCCTTTTCAAAATTCACAA-C
76981898 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
76981915 ACTGTAAGCG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
30 15 0.35
31 28 0.65
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAAATTCACAAC
Found at i:76982167 original size:25 final size:25
Alignment explanation
Indices: 76982133--76982204 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 25
76982123 CTCTTTTAAT
76982133 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* * *
76982158 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
**
76982183 AACTAAGGCAAAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
76982205 CACTTCCTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:76982275 original size:21 final size:21
Alignment explanation
Indices: 76982250--76982300 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
76982240 TATAATGAGT
*
76982250 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
76982271 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
76982292 ATATCATGT
1 ATATCATGT
76982301 ATATCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:76983371 original size:21 final size:21
Alignment explanation
Indices: 76983347--76983386 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
76983337 CGGCAAGGGG
76983347 GATGAAAAGAAAGGAAGTAAT
1 GATGAAAAGAAAGGAAGTAAT
*
76983368 GATGAAAAGAAAGGGAGTA
1 GATGAAAAGAAAGGAAGTA
76983387 TTGGTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.33, T:0.12
Consensus pattern (21 bp):
GATGAAAAGAAAGGAAGTAAT
Found at i:76990883 original size:42 final size:42
Alignment explanation
Indices: 76990817--76990992 Score: 147
Period size: 42 Copynumber: 4.2 Consensus size: 42
76990807 GCTCTCACAA
* * *
76990817 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAG
1 CTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTTTTGAG
* * *** *
76990859 CTTCTGTTTAACCCTTATAGGTTTCTATTCAAAACTTTTAAG
1 CTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTTTTGAG
* * * * *
76990901 CTTTTGTTTAACCTTTATGGGTTTCCGTTTAGCT-TTTACGAG
1 CTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTTT-TGAG
** * * * **
76990943 CTTCCATTCAACCCTTATGGGTTTCTATTTAGCTCTCATGAG
1 CTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTTTTGAG
76990985 CTTCTGTT
1 CTTCTGTT
76990993 CAGCCTTCGG
Statistics
Matches: 100, Mismatches: 32, Indels: 4
0.74 0.24 0.03
Matches are distributed among these distances:
41 3 0.03
42 96 0.96
43 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (42 bp):
CTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTTTTGAG
Found at i:76990930 original size:21 final size:21
Alignment explanation
Indices: 76990906--76990967 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 21
76990896 TTAAGCTTTT
76990906 GTTTAACCTTTATGGGTTTCC
1 GTTTAACCTTTATGGGTTTCC
* * * * *
76990927 GTTTAGCTTTTACGAGCTTCC
1 GTTTAACCTTTATGGGTTTCC
* * *
76990948 ATTCAACCCTTATGGGTTTC
1 GTTTAACCTTTATGGGTTTC
76990968 TATTTAGCTC
Statistics
Matches: 28, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.44
Consensus pattern (21 bp):
GTTTAACCTTTATGGGTTTCC
Found at i:76994912 original size:24 final size:24
Alignment explanation
Indices: 76994849--76994912 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 24
76994839 TTCATCTCAC
*
76994849 AACAATAAAAATAATA-AAAATAT
1 AACAATAAAAATAAAATAAAATAT
76994872 AAGCAA-AACAAAT-AAATAAAATACT
1 AA-CAATAA-AAATAAAATAAAATA-T
76994897 AA-AATAAAAATAAAAT
1 AACAATAAAAATAAAAT
76994913 CTAATCTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
23 12 0.35
24 19 0.56
25 3 0.09
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (24 bp):
AACAATAAAAATAAAATAAAATAT
Found at i:76999388 original size:24 final size:24
Alignment explanation
Indices: 76999360--76999437 Score: 86
Period size: 24 Copynumber: 3.2 Consensus size: 24
76999350 GCACATAAAT
*
76999360 GGGAAGCTT-TCAAGAGCCATTAAC
1 GGGAAGCTTAT-AAGAGCCAATAAC
* * *
76999384 GGGAACCTTATATGAGCCAATATC
1 GGGAAGCTTATAAGAGCCAATAAC
* *
76999408 GGGAAGCTTATATGAGCCAATATC
1 GGGAAGCTTATAAGAGCCAATAAC
76999432 GGGAAG
1 GGGAAG
76999438 GTTCAAGAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (24 bp):
GGGAAGCTTATAAGAGCCAATAAC
Found at i:76999648 original size:24 final size:25
Alignment explanation
Indices: 76999616--76999681 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
76999606 ACAATCAATC
*
76999616 GGGATGCTCTGAAGAGCTAT-TAAT
1 GGGAAGCTCTGAAGAGCTATATAAT
*
76999640 GGGAAGCTC-GCAAGAACTATATAAT
1 GGGAAGCTCTG-AAGAGCTATATAAT
76999665 GGGAAGCTCATG-AGAGC
1 GGGAAGCTC-TGAAGAGC
76999682 CAAATATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 1 0.03
24 16 0.46
25 17 0.49
27 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.21
Consensus pattern (25 bp):
GGGAAGCTCTGAAGAGCTATATAAT
Found at i:76999670 original size:25 final size:24
Alignment explanation
Indices: 76999627--76999673 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
76999617 GGATGCTCTG
*
76999627 AAGAGCTATTAATGGGAAGCTCGC
1 AAGAACTATTAATGGGAAGCTCGC
76999651 AAGAACTATATAATGGGAAGCTC
1 AAGAACTAT-TAATGGGAAGCTC
76999674 ATGAGAGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (24 bp):
AAGAACTATTAATGGGAAGCTCGC
Found at i:77002328 original size:23 final size:23
Alignment explanation
Indices: 77002281--77002334 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
77002271 ATGACCTAAC
* * * *
77002281 ACACGGTCTGGCACATGGGCGTG
1 ACACGGCCTGGCACACGAGCATG
77002304 ACACGGCCTGGCACACGAGCATG
1 ACACGGCCTGGCACACGAGCATG
*
77002327 ACATGGCC
1 ACACGGCC
77002335 ATGTAACCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.22, C:0.31, G:0.33, T:0.13
Consensus pattern (23 bp):
ACACGGCCTGGCACACGAGCATG
Found at i:77003096 original size:36 final size:36
Alignment explanation
Indices: 77003027--77003097 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
77003017 TGCTTTCAAA
* **
77003027 GGATATAATCGATAACAAATGGAAATGGGAACATAG
1 GGATATAATCAATAACAAATGGAAATGAAAACATAG
* * *
77003063 GGATATAATCAATAACCACTGGAAGTGAAAACATA
1 GGATATAATCAATAACAAATGGAAATGAAAACATA
77003098 AAGATAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (36 bp):
GGATATAATCAATAACAAATGGAAATGAAAACATAG
Found at i:77009044 original size:5 final size:5
Alignment explanation
Indices: 77009034--77009071 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
77009024 AATTTGTGAA
77009034 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
77009072 GAACACACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:77016524 original size:2 final size:2
Alignment explanation
Indices: 77016517--77016546 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
77016507 TCCCTATCTT
*
77016517 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77016547 AACTGTAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:77017356 original size:19 final size:19
Alignment explanation
Indices: 77017332--77017369 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77017322 TAATTCTAGA
77017332 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
77017351 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
77017370 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:77020409 original size:26 final size:25
Alignment explanation
Indices: 77020320--77020409 Score: 60
Period size: 25 Copynumber: 3.5 Consensus size: 25
77020310 TATAACATTT
* *
77020320 TAATTTAATTTATTCACATTATATAA
1 TAATTTAATTTAATC-CATTATATGA
77020346 TAA-TTAATTTAATTACCA-TAT-TGA
1 TAATTTAATTTAA-T-CCATTATATGA
** * *
77020370 TACCTCACTATTAATCGCATTATATGA
1 TAATTTAAT-TTAATC-CATTATATGA
77020397 TAATTTAATTTAA
1 TAATTTAATTTAA
77020410 ATTGATTTAG
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
24 5 0.10
25 17 0.35
26 17 0.35
27 9 0.19
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (25 bp):
TAATTTAATTTAATCCATTATATGA
Found at i:77020596 original size:9 final size:9
Alignment explanation
Indices: 77020567--77020609 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
77020557 CACATCTCGA
77020567 ATCATAATAT
1 ATCAT-ATAT
77020577 AT-ATATAT
1 ATCATATAT
*
77020585 ATCATTTAT
1 ATCATATAT
77020594 ATCATATAT
1 ATCATATAT
77020603 AT-ATATA
1 ATCATATA
77020610 ATAAAATAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 11 0.37
9 17 0.57
10 2 0.07
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (9 bp):
ATCATATAT
Found at i:77021218 original size:20 final size:21
Alignment explanation
Indices: 77021190--77021228 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
77021180 AATAAAAAAT
77021190 AAAAGTAATTTTCAAAATTTG
1 AAAAGTAATTTTCAAAATTTG
*
77021211 AAAA-TAATTTTTAAAATT
1 AAAAGTAATTTTCAAAATT
77021229 CAAAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (21 bp):
AAAAGTAATTTTCAAAATTTG
Found at i:77021235 original size:19 final size:19
Alignment explanation
Indices: 77021190--77021248 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
77021180 AATAAAAAAT
* *
77021190 AAAAGTAATTTTCAAAATTTG
1 AAAA-TAATTTTTAAAA-TTC
77021211 AAAATAATTTTTAAAATTC
1 AAAATAATTTTTAAAATTC
*
77021230 AAAAT-ATTTATAGAAATTC
1 AAAATAATTTTTA-AAATTC
77021249 TAATATTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 6 0.18
19 13 0.38
20 11 0.32
21 4 0.12
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTC
Found at i:77021611 original size:21 final size:21
Alignment explanation
Indices: 77021585--77021624 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
77021575 ACCTTTTCTA
*
77021585 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGACAAAACTATC
77021606 AAGTTAAAAGACAAAACTA
1 AAGTTAAAAGACAAAACTA
77021625 CATTGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGACAAAACTATC
Found at i:77022612 original size:24 final size:24
Alignment explanation
Indices: 77022567--77022612 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
77022557 CTTATTTCCT
* *
77022567 TATCATATTAAGTGTTTGAAATTG
1 TATCATATTAAGTGTCTAAAATTG
*
77022591 TATCATGTTAAGTGTCTAAAAT
1 TATCATATTAAGTGTCTAAAAT
77022613 CACTCCAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (24 bp):
TATCATATTAAGTGTCTAAAATTG
Found at i:77033996 original size:46 final size:46
Alignment explanation
Indices: 77033929--77034103 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
77033919 TGTAACCCGC
*
77033929 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
77033975 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
77034025 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
77034068 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
77034104 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:77034049 original size:93 final size:93
Alignment explanation
Indices: 77033937--77034107 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77033927 GCCCATAAGT
* * *
77033937 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77034002 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
77034030 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77034095 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77034108 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77041567 original size:46 final size:47
Alignment explanation
Indices: 77041500--77041674 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 47
77041490 TGTAACCCGC
*
77041500 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
* *
77041546 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC--GTTCGCAT
* * * *
77041596 -C-TCA-CGAACTCGGGCTCAACTCAACGAGTTCG-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
77041639 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGA
77041675 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
Found at i:77041622 original size:93 final size:93
Alignment explanation
Indices: 77041508--77041678 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
77041498 GCCCATAAGT
*
77041508 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
77041572 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGAATGCCTAGTTACATCTCAC
* *
77041601 GAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77041666 CGAGTTCGAATGC
66 CGAGTTCGAATGC
77041679 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:77045350 original size:19 final size:20
Alignment explanation
Indices: 77045323--77045360 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
77045313 TGACCAAACT
*
77045323 GATCAGATT-ATTGATTTTA
1 GATCAGATTGATTCATTTTA
*
77045342 GATCCGATTGATTCATTTT
1 GATCAGATTGATTCATTTT
77045361 TTTTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (20 bp):
GATCAGATTGATTCATTTTA
Found at i:77048439 original size:25 final size:25
Alignment explanation
Indices: 77048410--77048462 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
77048400 ATATGTACGT
77048410 TTGTTAAAAATTACATACATTTTTA
1 TTGTTAAAAATTACATACATTTTTA
77048435 TTGTTAAAAATTACATACATTTTTA
1 TTGTTAAAAATTACATACATTTTTA
77048460 TTG
1 TTG
77048463 GCTAATGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.49
Consensus pattern (25 bp):
TTGTTAAAAATTACATACATTTTTA
Found at i:77051096 original size:28 final size:30
Alignment explanation
Indices: 77051058--77051114 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
77051048 CATAAAGAAC
77051058 TAAATTCTTAAAAATAAAAATAA-ATAAAT
1 TAAATTCTTAAAAATAAAAATAATATAAAT
**
77051087 TAAATT-TTAAATTTAAAAATAATATAAA
1 TAAATTCTTAAAAATAAAAATAATATAAA
77051115 GAATTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (30 bp):
TAAATTCTTAAAAATAAAAATAATATAAAT
Found at i:77052133 original size:16 final size:18
Alignment explanation
Indices: 77052112--77052150 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
77052102 TAATTCTTGA
77052112 CATTTT-AGATTTAGG-T
1 CATTTTAAGATTTAGGAT
*
77052128 CATTTTAAGTTTTAGGAT
1 CATTTTAAGATTTAGGAT
77052146 CATTT
1 CATTT
77052151 ATTCAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 8 0.40
18 6 0.30
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.51
Consensus pattern (18 bp):
CATTTTAAGATTTAGGAT
Found at i:77054584 original size:6 final size:6
Alignment explanation
Indices: 77054575--77054599 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
77054565 AGCAGAAAAA
77054575 TTGCAT TTGCAT TTGCAT TTGCAT T
1 TTGCAT TTGCAT TTGCAT TTGCAT T
77054600 GCAGCCCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TTGCAT
Found at i:77059406 original size:29 final size:28
Alignment explanation
Indices: 77059352--77059406 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
77059342 CTCTTTAAAA
77059352 TTTTGGAATTTAGTCTCTATACTTTTAT
1 TTTTGGAATTTAGTCTCTATACTTTTAT
*
77059380 TTTTAGGAATTTAGTCTCTCTACTTTT
1 TTTT-GGAATTTAGTCTCTATACTTTT
77059407 CAGATTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.56
Consensus pattern (28 bp):
TTTTGGAATTTAGTCTCTATACTTTTAT
Found at i:77059415 original size:31 final size:29
Alignment explanation
Indices: 77059350--77059415 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
77059340 TACTCTTTAA
77059350 AATTTT-GGAATTTAGTCTCTATACTTTT
1 AATTTTAGGAATTTAGTCTCTATACTTTT
* *
77059378 ATTTTTAGGAATTTAGTCTCTCTACTTTT
1 AATTTTAGGAATTTAGTCTCTATACTTTT
77059407 CAGATTTTA
1 -A-ATTTTA
77059416 AAATTCAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 5 0.16
29 21 0.66
30 1 0.03
31 5 0.16
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.53
Consensus pattern (29 bp):
AATTTTAGGAATTTAGTCTCTATACTTTT
Found at i:77083471 original size:31 final size:31
Alignment explanation
Indices: 77083411--77083471 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
77083401 ATATATTTAA
***
77083411 TTTATATTTTTAAATTTTTTCATTATTAATC
1 TTTATATTTTTAAATTTTAGAATTATTAATC
77083442 TTTATATTTTTAGAATTTTAGAATT-TTAAT
1 TTTATATTTTTA-AATTTTAGAATTATTAAT
77083472 TTTGATGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (31 bp):
TTTATATTTTTAAATTTTAGAATTATTAATC
Found at i:77084989 original size:11 final size:11
Alignment explanation
Indices: 77084975--77085013 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
77084965 AAATGATACC
77084975 AAAATAATAAA
1 AAAATAATAAA
*
77084986 AAAATAACAAA
1 AAAATAATAAA
*
77084997 AAAA-AGTAAA
1 AAAATAATAAA
77085007 AAAATAA
1 AAAATAA
77085014 CCGTGGACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAATAATAAA
Found at i:77087388 original size:24 final size:24
Alignment explanation
Indices: 77087333--77087389 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
77087323 TTAAATATAC
*
77087333 ATATTTTT-TAAAATTTATTTTTA
1 ATATTTTTAGAAAATTTATTTTTA
77087356 AT-TTATTTAGAAATATTTA-TTTTA
1 ATATT-TTTAGAAA-ATTTATTTTTA
77087380 ATATTTTTAG
1 ATATTTTTAG
77087390 TATTTTTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 2 0.07
23 5 0.17
24 15 0.52
25 7 0.24
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
ATATTTTTAGAAAATTTATTTTTA
Found at i:77091610 original size:13 final size:13
Alignment explanation
Indices: 77091592--77091616 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77091582 ATCATTAAAT
77091592 AAAAAAAATTATG
1 AAAAAAAATTATG
77091605 AAAAAAAATTAT
1 AAAAAAAATTAT
77091617 TTAATTCCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAAAAAATTATG
Found at i:77093452 original size:27 final size:26
Alignment explanation
Indices: 77093415--77093467 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
77093405 TGTTAATGCA
* *
77093415 AGTAATTAGTTTTAATCAATTTGAAT
1 AGTAATTAGTTTCAAACAATTTGAAT
*
77093441 AGTAGATTAGTTTCAAACATTTTGAAT
1 AGTA-ATTAGTTTCAAACAATTTGAAT
77093468 CCTTGATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (26 bp):
AGTAATTAGTTTCAAACAATTTGAAT
Found at i:77094091 original size:15 final size:16
Alignment explanation
Indices: 77094068--77094100 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77094058 AATAAAAATT
77094068 TTAAATTTTAG-TTAA
1 TTAAATTTTAGTTTAA
*
77094083 TTAAGTTTTAGTTTAA
1 TTAAATTTTAGTTTAA
77094099 TT
1 TT
77094101 GACATTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (16 bp):
TTAAATTTTAGTTTAA
Found at i:77096711 original size:21 final size:21
Alignment explanation
Indices: 77096687--77096757 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
77096677 CACAGGTGAT
*
77096687 TGAATATTAATTTAATTAGTA
1 TGAATATTAATTTAATTAATA
* *
77096708 TGAATATTTATATAATTAAT-
1 TGAATATTAATTTAATTAATA
* *
77096728 TAAATTTTAATTTAATTAATA
1 TGAATATTAATTTAATTAATA
77096749 TGAATATTA
1 TGAATATTA
77096758 TTATTAATGT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 16 0.40
21 24 0.60
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (21 bp):
TGAATATTAATTTAATTAATA
Found at i:77098809 original size:18 final size:19
Alignment explanation
Indices: 77098776--77098812 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
77098766 TAAATTATTT
*
77098776 TTTATTTTTATTTTTAATA
1 TTTATTTATATTTTTAATA
77098795 TTTATTTAT-TTTTTAATA
1 TTTATTTATATTTTTAATA
77098813 ATATATTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTTATATTTTTAATA
Found at i:77103344 original size:41 final size:42
Alignment explanation
Indices: 77103280--77103372 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 42
77103270 CACCTAATAC
*
77103280 CTCATCGAATTTAATCTGAAGCAATAATACGACACATAGTGT
1 CTCATCGAATTTAATCCGAAGCAATAATACGACACATAGTGT
* * *
77103322 CTCATCGGAA-TT-ATCCGAAGCAATATTACGACGCATATAGTGC
1 CTCATC-GAATTTAATCCGAAGCAATAATACGA--CACATAGTGT
77103365 CTCATCGA
1 CTCATCGA
77103373 CTTGAGGTCG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
41 17 0.39
42 10 0.23
43 17 0.39
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (42 bp):
CTCATCGAATTTAATCCGAAGCAATAATACGACACATAGTGT
Found at i:77103363 original size:43 final size:43
Alignment explanation
Indices: 77103279--77103371 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
77103269 GCACCTAATA
*
77103279 CCTCATC-GAATTTAATCTGAAGCAATAATACGACACATAGTG
1 CCTCATCGGAATTTAATCCGAAGCAATAATACGACACATAGTG
* * *
77103321 TCTCATCGGAA-TT-ATCCGAAGCAATATTACGACGCATATAGTG
1 CCTCATCGGAATTTAATCCGAAGCAATAATACGA--CACATAGTG
77103364 CCTCATCG
1 CCTCATCG
77103372 ACTTGAGGTC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 17 0.40
42 8 0.19
43 18 0.42
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
CCTCATCGGAATTTAATCCGAAGCAATAATACGACACATAGTG
Done.