Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 233 of 320
Found at i:77104404 original size:5 final size:5
Alignment explanation
Indices: 77104396--77104430 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
77104386 ATTTATGTTT
77104396 TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA
77104431 ACTTAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:77107671 original size:21 final size:20
Alignment explanation
Indices: 77107647--77107686 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
77107637 ATGTTGAAGT
*
77107647 TCCACACGGGCGTGTTGCCCA
1 TCCACACGAGCGTG-TGCCCA
77107668 TCCACACGAGCGTGTGCCC
1 TCCACACGAGCGTGTGCCC
77107687 TGTGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.40, G:0.28, T:0.17
Consensus pattern (20 bp):
TCCACACGAGCGTGTGCCCA
Found at i:77108254 original size:10 final size:10
Alignment explanation
Indices: 77108239--77108298 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
77108229 TAATTCTAGG
77108239 ATTTAT-TTT
1 ATTTATCTTT
77108248 CATTTATCTTT
1 -ATTTATCTTT
77108259 ATTTATCTTT
1 ATTTATCTTT
*
77108269 AATTATCTTT
1 ATTTATCTTT
*
77108279 AATTAT-TTGT
1 ATTTATCTT-T
77108289 ATTTATCTTT
1 ATTTATCTTT
77108299 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:77110715 original size:46 final size:47
Alignment explanation
Indices: 77110590--77110732 Score: 135
Period size: 46 Copynumber: 2.9 Consensus size: 47
77110580 ATTCATGTTC
*
77110590 CCATATACGACCATAGCTGGGCTATGGCATTGGTGTGATGTGATAATGTGATT
1 CCATATAAGACCATAGCTGGGCTATGGCATT-G-GT-ATGT--T-ATGTGATT
** * *
77110643 CTGTATAAGACCATATCTGGGATATGGCATTGGTATGTTATGTGA-T
1 CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTGATT
* * * * *
77110689 CCATATAAGACCATGGCAGGGCTATGGCTTTGGTGTGTGATGTG
1 CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTG
77110733 TGACAATGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
46 36 0.47
47 6 0.08
48 1 0.01
50 4 0.05
51 2 0.03
52 1 0.01
53 26 0.34
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (47 bp):
CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTGATT
Found at i:77112344 original size:28 final size:29
Alignment explanation
Indices: 77112311--77112366 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
77112301 TAAGCTTCGA
*
77112311 TTTTGGTTATTTCGATTATGGC-ATAGAT
1 TTTTGGTTATTTCAATTATGGCAATAGAT
77112339 TTTTGGTTATTTCAATTATGGCAATAGA
1 TTTTGGTTATTTCAATTATGGCAATAGA
77112367 AGTGGTCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.25, C:0.07, G:0.20, T:0.48
Consensus pattern (29 bp):
TTTTGGTTATTTCAATTATGGCAATAGAT
Found at i:77115246 original size:14 final size:14
Alignment explanation
Indices: 77115215--77115252 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
77115205 TATGATAGTC
77115215 GAAAATGA-TTTCG
1 GAAAATGATTTTCG
*
77115228 GAAAATGATTTTTG
1 GAAAATGATTTTCG
77115242 GAAAATGATTT
1 GAAAATGATTT
77115253 ACTTTTCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.37
Consensus pattern (14 bp):
GAAAATGATTTTCG
Found at i:77115375 original size:17 final size:18
Alignment explanation
Indices: 77115337--77115378 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
77115327 AAAATCTGTT
*
77115337 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
*
77115355 TTTATATATATTACT-AA
1 TTTATATATATTAATAAA
77115372 TTTATAT
1 TTTATAT
77115379 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:77127651 original size:197 final size:197
Alignment explanation
Indices: 77127292--77128204 Score: 1473
Period size: 197 Copynumber: 4.6 Consensus size: 197
77127282 AAATCTGCTT
*
77127292 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTACGTAAGCACG
1 CTTCGATTTGTTCTCTGACAATACAGAGA-GCCAAATCATCTTAGATTTGC-TTACGTAA-CACG
*
77127357 TGAAAGCCAAATCA-CTATG-ATTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
63 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA-CACAAGGATGCCAAACCATCTTG
*
77127420 GATC-GCTTCAGCATAAACATC-GAAGGCAGATCTGCTATGTGTCTGCTCTCCATCAAAG-GAAG
127 GATCTGCTTCAG--TAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
77127482 ATGCCAAA
190 ATGCCAAA
77127490 CTTCGA-TTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTACGTAACACGTG
1 CTTCGATTTGTTCTCTGACAATACAGAGA-GCCAAATCATCTTAGATTTGCTTACGTAACACGTG
*
77127554 AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAACACAA-GATGCCAAACCATCTTGGAT
65 AAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTGGAT
*
77127618 CTGCTTCAGTGTAAACATCTGAAGGTGGATCTGCTATGTGTCTGC-CTCCATCAAA-TGGAAGAT
130 CTGCTTCA--GTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGT-GAAGAT
77127681 GCC--A
192 GCCAAA
77127685 CTTCGATTTGTTCTCTGACAATACAGAGA--CAAATCATCTTAGATTTGCTTCATCGTAACACGT
1 CTTCGATTTGTTCTCTGACAATACAGAGAGCCAAATCATCTTAGATTTGCTT-A-CGTAACACGT
*
77127748 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAATCATCTTGGA
64 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTGGA
*
77127813 TCTGCTTCAGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCTCTCCATGAAAGTG-AGATG
129 TCTGCTTCAGTAAACATCTGAAGGT-AGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATG
*
77127877 CCAGA
193 CCAAA
77127882 CTTCGATTTGTTCTCTGACAATACAGAGA-CCAAATCATCTTAGATTTGCTTACGTAACACGTGA
1 CTTCGATTTGTTCTCTGACAATACAGAGAGCCAAATCATCTTAGATTTGCTTACGTAACACGTGA
77127946 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGT-AACACAAGGATGCCAAACCATCTTGGAT
*
77128011 CTACTTCAGTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCC
130 CTGCTTCAGTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCC
77128076 AAA
195 AAA
*
77128079 CTTCGATTCGTTCTCTGACAATAC--AGAGCCAAATCATCTTAGATTTGCTTCATCGTAACACGT
1 CTTCGATTTGTTCTCTGACAATACAGAGAGCCAAATCATCTTAGATTTGCTT-A-CGTAACACGT
77128142 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTG
64 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTG
77128205 TTAGATCTGC
Statistics
Matches: 678, Mismatches: 14, Indels: 47
0.92 0.02 0.06
Matches are distributed among these distances:
193 21 0.03
194 17 0.03
195 128 0.19
196 203 0.30
197 233 0.34
198 76 0.11
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (197 bp):
CTTCGATTTGTTCTCTGACAATACAGAGAGCCAAATCATCTTAGATTTGCTTACGTAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTGGATC
TGCTTCAGTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCA
AA
Found at i:77127981 original size:391 final size:391
Alignment explanation
Indices: 77127292--77128204 Score: 1497
Period size: 391 Copynumber: 2.3 Consensus size: 391
77127282 AAATCTGCTT
* *
77127292 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTA-CGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGA---CAAATCATCTTAGATTTGCTTCATCGTAA-CAC
*
77127356 GTGAAAGCCAAATCA-CTATG-ATTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
62 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA-CACAAGGATGCCAAACCATCTT
*
77127419 GGATCGCTTCAGCATAAACATCGAAGGCAGATCTGCTATGTGTCTGCTCTCCATCAAAGGAAGAT
126 GGATCGCTTCAG-ATAAACATCGAAGGAAGATCTGCTATGTGTCTGCTCTCCATCAAAGGAAGAT
77127484 GCCAAACTTCGATTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTACGTAAC
190 GCCAAACTTCGATTGTTCTCTGACAATACAGAGA-GCCAAATCATCTTAGATTTGCTTACGTAAC
*
77127549 ACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGT-AACACAA-GATGCCAAACCATC
254 ACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATC
* *
77127612 TTGGATCTGCTTCAGTGTAAACATCTGAAGGTGGATCTGCTATGTGTCTGC-CTCCATCAAA-TG
319 TTGGATCTACTTCA--GTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGT-
77127675 GAAGATGCC-A
381 GAAGATGCCAA
77127685 CTTCGATTTGTTCTCTGACAATACAGAGACAAATCATCTTAGATTTGCTTCATCGTAACACGTGA
1 CTTCGATTTGTTCTCTGACAATACAGAGACAAATCATCTTAGATTTGCTTCATCGTAACACGTGA
*
77127750 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAATCATCTTGGATC
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTGGATC
*
77127815 TGCTTCAG-TAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCTCTCCATGAAAGTG-AGATGC
131 -GCTTCAGATAAACATC-GAAGG-AAGATCTGCTATGTGTCTGCTCTCCATCAAAG-GAAGATGC
*
77127878 CAGACTTCGATTTGTTCTCTGACAATACAGAGA-CCAAATCATCTTAGATTTGCTTACGTAACAC
192 CAAACTTCGA-TTGTTCTCTGACAATACAGAGAGCCAAATCATCTTAGATTTGCTTACGTAACAC
77127942 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
256 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
77128007 GGATCTACTTCAGTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGA
321 GGATCTACTTCAGTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGA
77128072 TGCCAAA
386 TGCC-AA
* *
77128079 CTTCGATTCGTTCTCTGACAATACAGAGCCAAATCATCTTAGATTTGCTTCATCGTAACACGTGA
1 CTTCGATTTGTTCTCTGACAATACAGAGACAAATCATCTTAGATTTGCTTCATCGTAACACGTGA
77128144 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTG
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTG
77128205 TTAGATCTGC
Statistics
Matches: 493, Mismatches: 13, Indels: 27
0.92 0.02 0.05
Matches are distributed among these distances:
390 48 0.10
391 145 0.29
392 97 0.20
393 79 0.16
394 124 0.25
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (391 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACAAATCATCTTAGATTTGCTTCATCGTAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAACACAAGGATGCCAAACCATCTTGGATC
GCTTCAGATAAACATCGAAGGAAGATCTGCTATGTGTCTGCTCTCCATCAAAGGAAGATGCCAAA
CTTCGATTGTTCTCTGACAATACAGAGAGCCAAATCATCTTAGATTTGCTTACGTAACACGTGAA
AGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATC
TACTTCAGTAAACATCTGAAGGTAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCA
A
Found at i:77139620 original size:15 final size:16
Alignment explanation
Indices: 77139602--77139642 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
77139592 AATGAAAACG
77139602 ATAATAATAATAT-AA
1 ATAATAATAATATGAA
*
77139617 ATAATAATAGTATGAA
1 ATAATAATAATATGAA
*
77139633 ATGATAATAA
1 ATAATAATAA
77139643 CACATGGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (16 bp):
ATAATAATAATATGAA
Found at i:77139842 original size:26 final size:26
Alignment explanation
Indices: 77139812--77139863 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
77139802 TATATGTATT
*
77139812 AAAATATATACGTAGTAATAGAAATA
1 AAAATATATACGTAGTAATAAAAATA
* *
77139838 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAGTAATAAAAATA
77139864 TATACATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.56, C:0.04, G:0.12, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAGTAATAAAAATA
Found at i:77140159 original size:45 final size:45
Alignment explanation
Indices: 77140109--77140227 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 45
77140099 CATTATAGAC
* * *
77140109 AAAAATATATACATAATGT-AGTATTGAAAATATTTACAT-AATATA
1 AAAAATATATA-ATAATATGA-TATTAAAAATATATACATAAATATA
77140154 AAAAATATATGAATAATATGATATTAAAAATATATACATAAAAATATA
1 AAAAATATAT-AATAATATGATATTAAAAATATATACAT--AAATATA
77140202 ATAAAATATAT-ATAATAT-ATA-TAAAA
1 A-AAAATATATAATAATATGATATTAAAA
77140228 TGTATAAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
45 37 0.57
46 5 0.08
47 7 0.11
48 7 0.11
49 9 0.14
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.34
Consensus pattern (45 bp):
AAAAATATATAATAATATGATATTAAAAATATATACATAAATATA
Found at i:77140163 original size:11 final size:11
Alignment explanation
Indices: 77140149--77140245 Score: 65
Period size: 11 Copynumber: 8.5 Consensus size: 11
77140139 TATTTACATA
77140149 ATATAAAAAAT
1 ATATAAAAAAT
*
77140160 ATATGAATAATAT
1 ATAT-AA-AAAAT
*
77140173 GATATTAAAAAT
1 -ATATAAAAAAT
77140185 ATATACATAAAA-
1 ATATA-A-AAAAT
77140197 ATATAATAAAAT
1 ATATAA-AAAAT
*
77140209 ATAT--ATAAT
1 ATATAAAAAAT
*
77140218 ATATATAAAAT
1 ATATAAAAAAT
* *
77140229 GTATAAAATAT
1 ATATAAAAAAT
77140240 ATATAA
1 ATATAA
77140246 TACATACACA
Statistics
Matches: 68, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
9 8 0.12
11 31 0.46
12 16 0.24
13 9 0.13
14 4 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:77140177 original size:25 final size:23
Alignment explanation
Indices: 77140149--77140245 Score: 96
Period size: 25 Copynumber: 4.3 Consensus size: 23
77140139 TATTTACATA
77140149 ATATAAAAAATATATGAATAATAT
1 ATATAAAAAATATAT-AATAATAT
* *
77140173 GATATTAAAAATATATACATAA-AA
1 -ATATAAAAAATATATA-ATAATAT
77140197 ATATAATAAAATATAT-ATAATAT
1 ATATAA-AAAATATATAATAATAT
*
77140220 ATAT--AAAATGTATAA-AATAT
1 ATATAAAAAATATATAATAATAT
77140240 ATATAA
1 ATATAA
77140246 TACATACACA
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
20 17 0.28
21 1 0.02
22 4 0.07
23 10 0.16
24 11 0.18
25 18 0.30
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATAAAAAATATATAATAATAT
Found at i:77140220 original size:9 final size:9
Alignment explanation
Indices: 77140196--77140247 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
77140186 TATACATAAA
*
77140196 AATATAATAA
1 AATAT-ATAT
77140206 AATATATAT
1 AATATATAT
77140215 AATATATAT
1 AATATATAT
* *
77140224 AAAATGTATAA
1 --AATATATAT
77140235 AATATATAT
1 AATATATAT
77140244 AATA
1 AATA
77140248 CATACACATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
9 23 0.66
10 5 0.14
11 7 0.20
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (9 bp):
AATATATAT
Found at i:77148397 original size:43 final size:43
Alignment explanation
Indices: 77148333--77148414 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
77148323 TACTATGTGG
* *
77148333 AAATAACAAGATAACACGACATTATACATATGATAATATATGA
1 AAATAACAAGATAACACGACATTACACATATGACAATATATGA
* * * *
77148376 AAATAATAAGATGACATGACATTACATATATGACAATAT
1 AAATAACAAGATAACACGACATTACACATATGACAATAT
77148415 GTTTGTCACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.52, C:0.11, G:0.10, T:0.27
Consensus pattern (43 bp):
AAATAACAAGATAACACGACATTACACATATGACAATATATGA
Found at i:77149152 original size:258 final size:257
Alignment explanation
Indices: 77148676--77149190 Score: 633
Period size: 258 Copynumber: 2.0 Consensus size: 257
77148666 GGTAGAAACA
* * *
77148676 AATCAATTGTCGTTGATGAAACCTTACAGAAGAAAAAAAAATACCAACTAAAAAAAAGTAAATTC
1 AATCAATTATCGTTGATGAAACCTTACAGAAGAAAAAAAAATACAAACTAAAAAAAAGCAAATTC
* * * **
77148741 AGTGTGATAAATAGGAGTGTGAATACATTAAAGCTTGCAAGCCAAATAGCTTTAGCAACATGATC
66 AGTGTGACAAATAGGAGTGTGAATACATTAAAGCTTGCAAGCCAAATAGCTTCAACAACACAATC
* * * *
77148806 GAGCAATAAAGTTCCCTGAATGTGCATCACTAAAAGAACATTGAAATACAACTGCACCTTTAGAG
131 GAGCAATAAAGTGCCCTAAATGTGCATCACTAAAAGAACATTGAAATACAACTGCACCATTAGAA
* * * * *
77148871 TTATTGGGTTCTTAAAGCTAATAATCAAATACTTGTGTATACATGTCAATTCTTACATAAAT
196 TTATTGGGTTCTCAAAGCTAATAATCAAATACTTATGGATACATATCAATTCTCACATAAAT
* * * *
77148933 AATCAATTATCGTTGGTGAAACCTTACGGAAGGAAAAAATAA-ACAAACTAAAAGAAAGCAAA-T
1 AATCAATTATCGTTGATGAAACCTTACAGAA-GAAAAAAAAATACAAACTAAAAAAAAGCAAATT
* * * *
77148996 CTAGTGTGACAAATAGGAGTTTGACTTCATTAAAGCTTGCAATCCAAATAG-TTGGCAACAACAC
65 C-AGTGTGACAAATAGGAGTGTGAATACATTAAAGCTTGCAAGCCAAATAGCTT--CAACAACAC
** * * * * *
77149060 AATCGAGCAATAAAGTGGTCTAAATGTGTAGT-ATTAGAGGAACATTGAAATCCAACTGCACCAT
127 AATCGAGCAATAAAGTGCCCTAAATGTGCA-TCACTAAAAGAACATTGAAATACAACTGCACCAT
** * *
77149124 TAGAATTATTGGGTTCTCAAAGCTAATAATTTATTTCTTATGGATACATATCAATTCTCACATAA
191 TAGAATTATTGGGTTCTCAAAGCTAATAATCAAATACTTATGGATACATATCAATTCTCACATAA
77149189 AT
256 AT
77149191 TTGAAATTTT
Statistics
Matches: 217, Mismatches: 36, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
256 4 0.02
257 89 0.41
258 123 0.57
259 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (257 bp):
AATCAATTATCGTTGATGAAACCTTACAGAAGAAAAAAAAATACAAACTAAAAAAAAGCAAATTC
AGTGTGACAAATAGGAGTGTGAATACATTAAAGCTTGCAAGCCAAATAGCTTCAACAACACAATC
GAGCAATAAAGTGCCCTAAATGTGCATCACTAAAAGAACATTGAAATACAACTGCACCATTAGAA
TTATTGGGTTCTCAAAGCTAATAATCAAATACTTATGGATACATATCAATTCTCACATAAAT
Found at i:77151188 original size:17 final size:17
Alignment explanation
Indices: 77151166--77151199 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
77151156 ATGGAAACTA
77151166 ATCTTAGAAGATTGGAT
1 ATCTTAGAAGATTGGAT
77151183 ATCTTAGAAGATTGGAT
1 ATCTTAGAAGATTGGAT
77151200 TTTGTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATTGGAT
Found at i:77166115 original size:5 final size:5
Alignment explanation
Indices: 77166102--77166140 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
77166092 ATTTATGTTT
77166102 TATTA -ATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
77166141 ACTTAATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:77169351 original size:21 final size:20
Alignment explanation
Indices: 77169327--77169366 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
77169317 ATGTTGAAGT
*
77169327 TCCACACGGGCGTGTTGCCCA
1 TCCACACGAGCGTG-TGCCCA
77169348 TCCACACGAGCGTGTGCCC
1 TCCACACGAGCGTGTGCCC
77169367 TGTGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.40, G:0.28, T:0.17
Consensus pattern (20 bp):
TCCACACGAGCGTGTGCCCA
Found at i:77169934 original size:10 final size:10
Alignment explanation
Indices: 77169919--77169978 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
77169909 TAATTCTAGG
77169919 ATTTAT-TTT
1 ATTTATCTTT
77169928 CATTTATCTTT
1 -ATTTATCTTT
77169939 ATTTATCTTT
1 ATTTATCTTT
*
77169949 AATTATCTTT
1 ATTTATCTTT
*
77169959 AATTAT-TTGT
1 ATTTATCTT-T
77169969 ATTTATCTTT
1 ATTTATCTTT
77169979 TAGAATTTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:77172396 original size:46 final size:47
Alignment explanation
Indices: 77172271--77172413 Score: 135
Period size: 46 Copynumber: 2.9 Consensus size: 47
77172261 ATTCATGTTC
*
77172271 CCATATACGACCATAGCTGGGCTATGGCATTGGTGTGATGTGATAATGTGATT
1 CCATATAAGACCATAGCTGGGCTATGGCATT-G-GT-ATGT--T-ATGTGATT
** * *
77172324 CTGTATAAGACCATATCTGGGATATGGCATTGGTATGTTATGTGA-T
1 CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTGATT
* * * * *
77172370 CCATATAAGACCATGGCAGGGCTATGGCTTTGGTGTGTGATGTG
1 CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTG
77172414 TGACAATGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
46 36 0.47
47 6 0.08
48 1 0.01
50 4 0.05
51 2 0.03
52 1 0.01
53 26 0.34
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (47 bp):
CCATATAAGACCATAGCTGGGCTATGGCATTGGTATGTTATGTGATT
Found at i:77174059 original size:29 final size:29
Alignment explanation
Indices: 77174026--77174085 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
77174016 AATAAGCTTC
*
77174026 GATTTTTGGTTATTTCGATTATGGCAATA
1 GATTTTTGGTTATTTCAATTATGGCAATA
77174055 GATTTTTGGTTATTTCAATTATGGCAATA
1 GATTTTTGGTTATTTCAATTATGGCAATA
77174084 GA
1 GA
77174086 AGTGGTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (29 bp):
GATTTTTGGTTATTTCAATTATGGCAATA
Found at i:77176995 original size:14 final size:14
Alignment explanation
Indices: 77176976--77177014 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
77176966 TATGATAGTC
77176976 GAAAATGATTTTCG
1 GAAAATGATTTTCG
*
77176990 GAAAATGATTTTTG
1 GAAAATGATTTTCG
77177004 GAAAATGATTT
1 GAAAATGATTT
77177015 ACTTTTCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (14 bp):
GAAAATGATTTTCG
Found at i:77177126 original size:18 final size:18
Alignment explanation
Indices: 77177100--77177142 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
77177090 AAAATCTGTT
*
77177100 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
*
77177118 TTTATATATATTACTAAA
1 TTTATATATATTAATAAA
77177136 TTTATAT
1 TTTATAT
77177143 TTTAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:77189707 original size:25 final size:25
Alignment explanation
Indices: 77189662--77189735 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
77189652 ACGAACTGTA
*
77189662 AATGGTAAGCT-TCTCCAAGCTGAAT
1 AATGGTAAGCTCT-TCCGAGCTGAAT
77189687 AACT-GTAAGCTCTTCCGAGCTGAAT
1 AA-TGGTAAGCTCTTCCGAGCTGAAT
* * *
77189712 AATGGTAAGTTCATACGAGCTGAA
1 AATGGTAAGCTCTTCCGAGCTGAA
77189736 CATCAATAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
24 1 0.02
25 39 0.93
26 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
AATGGTAAGCTCTTCCGAGCTGAAT
Found at i:77190478 original size:25 final size:25
Alignment explanation
Indices: 77190433--77190506 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
77190423 ACGAACTGTA
*
77190433 AATGGTAAGCT-TCTCCAAGCTGAAT
1 AATGGTAAGCTCT-TCCGAGCTGAAT
77190458 AACT-GTAAGCTCTTCCGAGCTGAAT
1 AA-TGGTAAGCTCTTCCGAGCTGAAT
* * *
77190483 AATGGTAAGTTCATACGAGCTGAA
1 AATGGTAAGCTCTTCCGAGCTGAA
77190507 CATCAATAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
24 1 0.02
25 39 0.93
26 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
AATGGTAAGCTCTTCCGAGCTGAAT
Found at i:77190881 original size:771 final size:771
Alignment explanation
Indices: 77189400--77190938 Score: 3078
Period size: 771 Copynumber: 2.0 Consensus size: 771
77189390 TATAAAAACC
77189400 GAGAATCATGTATGAGTTCAACAACTATTCAAACTCCATATACATGTAACATCTATATTATGTAT
1 GAGAATCATGTATGAGTTCAACAACTATTCAAACTCCATATACATGTAACATCTATATTATGTAT
77189465 GCATATATCATATACAAACCATTTTCATGTACTTCATGTAAATATATGTACTAGTTTGTATCGAA
66 GCATATATCATATACAAACCATTTTCATGTACTTCATGTAAATATATGTACTAGTTTGTATCGAA
77189530 CTCATATAAATTCGTAATAGATCTTTGTCTGTTGAACTATTTAGAATATCGTTGGATACGCGGGT
131 CTCATATAAATTCGTAATAGATCTTTGTCTGTTGAACTATTTAGAATATCGTTGGATACGCGGGT
77189595 AGTACACACAAGGTGTACTGAACTGTAATCTATAAATTCATGTACATGTATGCTCATACGAACTG
196 AGTACACACAAGGTGTACTGAACTGTAATCTATAAATTCATGTACATGTATGCTCATACGAACTG
77189660 TAAATGGTAAGCTTCTCCAAGCTGAATAACTGTAAGCTCTTCCGAGCTGAATAATGGTAAGTTCA
261 TAAATGGTAAGCTTCTCCAAGCTGAATAACTGTAAGCTCTTCCGAGCTGAATAATGGTAAGTTCA
77189725 TACGAGCTGAACATCAATAAGCTCATAAGAGCTAAAATCGGTAACCCTAATGACATGTCATTTGA
326 TACGAGCTGAACATCAATAAGCTCATAAGAGCTAAAATCGGTAACCCTAATGACATGTCATTTGA
77189790 ATCCTACGAATTCTTAAGGTTCAAACAGGGTTAGATAATCGTCGTACGTCATTGGATATGCAATC
391 ATCCTACGAATTCTTAAGGTTCAAACAGGGTTAGATAATCGTCGTACGTCATTGGATATGCAATC
77189855 GGTATTCATATATGATGATTACACACTTCACAAACATATAATTCAATTTAAAACATATAAATGTA
456 GGTATTCATATATGATGATTACACACTTCACAAACATATAATTCAATTTAAAACATATAAATGTA
77189920 CAATTTAATTACACGAACTTACCTCGACGAATGTACGTAGATACGGAGGCGACTAATTCGAGATT
521 CAATTTAATTACACGAACTTACCTCGACGAATGTACGTAGATACGGAGGCGACTAATTCGAGATT
77189985 TTATCTTTGCCTTAATCTAACGTCGTATGAGGTCTAACCGGATCTATACAAATAAATTTAACTCA
586 TTATCTTTGCCTTAATCTAACGTCGTATGAGGTCTAACCGGATCTATACAAATAAATTTAACTCA
77190050 ATTCAATATAATTCACATTCAAATTAGTCCAACACAAGTTTTTGGAAAAATTACCATTTTGCCCC
651 ATTCAATATAATTCACATTCAAATTAGTCCAACACAAGTTTTTGGAAAAATTACCATTTTGCCCC
77190115 TATACTTTTAATTCTTTACAATTTAGTCCTTATCTCATAAAAATGGAAATTTTTAT
716 TATACTTTTAATTCTTTACAATTTAGTCCTTATCTCATAAAAATGGAAATTTTTAT
77190171 GAGAATCATGTATGAGTTCAACAACTATTCAAACTCCATATACATGTAACATCTATATTATGTAT
1 GAGAATCATGTATGAGTTCAACAACTATTCAAACTCCATATACATGTAACATCTATATTATGTAT
77190236 GCATATATCATATACAAACCATTTTCATGTACTTCATGTAAATATATGTACTAGTTTGTATCGAA
66 GCATATATCATATACAAACCATTTTCATGTACTTCATGTAAATATATGTACTAGTTTGTATCGAA
77190301 CTCATATAAATTCGTAATAGATCTTTGTCTGTTGAACTATTTAGAATATCGTTGGATACGCGGGT
131 CTCATATAAATTCGTAATAGATCTTTGTCTGTTGAACTATTTAGAATATCGTTGGATACGCGGGT
77190366 AGTACACACAAGGTGTACTGAACTGTAATCTATAAATTCATGTACATGTATGCTCATACGAACTG
196 AGTACACACAAGGTGTACTGAACTGTAATCTATAAATTCATGTACATGTATGCTCATACGAACTG
77190431 TAAATGGTAAGCTTCTCCAAGCTGAATAACTGTAAGCTCTTCCGAGCTGAATAATGGTAAGTTCA
261 TAAATGGTAAGCTTCTCCAAGCTGAATAACTGTAAGCTCTTCCGAGCTGAATAATGGTAAGTTCA
77190496 TACGAGCTGAACATCAATAAGCTCATAAGAGCTAAAATCGGTAACCCTAATGACATGTCATTTGA
326 TACGAGCTGAACATCAATAAGCTCATAAGAGCTAAAATCGGTAACCCTAATGACATGTCATTTGA
77190561 ATCCTACGAATTCTTAAGGTTCAAACAGGGTTAGATAATCGTCGTACGTCATTGGATATGCAATC
391 ATCCTACGAATTCTTAAGGTTCAAACAGGGTTAGATAATCGTCGTACGTCATTGGATATGCAATC
77190626 GGTATTCATATATGATGATTACACACTTCACAAACATATAATTCAATTTAAAACATATAAATGTA
456 GGTATTCATATATGATGATTACACACTTCACAAACATATAATTCAATTTAAAACATATAAATGTA
77190691 CAATTTAATTACACGAACTTACCTCGACGAATGTACGTAGATACGGAGGCGACTAATTCGAGATT
521 CAATTTAATTACACGAACTTACCTCGACGAATGTACGTAGATACGGAGGCGACTAATTCGAGATT
77190756 TTATCTTTGCCTTAATCTAACGTCGTATGAGGTCTAACCGGATCTATACAAATAAATTTAACTCA
586 TTATCTTTGCCTTAATCTAACGTCGTATGAGGTCTAACCGGATCTATACAAATAAATTTAACTCA
77190821 ATTCAATATAATTCACATTCAAATTAGTCCAACACAAGTTTTTGGAAAAATTACCATTTTGCCCC
651 ATTCAATATAATTCACATTCAAATTAGTCCAACACAAGTTTTTGGAAAAATTACCATTTTGCCCC
77190886 TATACTTTTAATTCTTTACAATTTAGTCCTTATCTCATAAAAATGGAAATTTT
716 TATACTTTTAATTCTTTACAATTTAGTCCTTATCTCATAAAAATGGAAATTTT
77190939 CAAAATTTCA
Statistics
Matches: 768, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
771 768 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (771 bp):
GAGAATCATGTATGAGTTCAACAACTATTCAAACTCCATATACATGTAACATCTATATTATGTAT
GCATATATCATATACAAACCATTTTCATGTACTTCATGTAAATATATGTACTAGTTTGTATCGAA
CTCATATAAATTCGTAATAGATCTTTGTCTGTTGAACTATTTAGAATATCGTTGGATACGCGGGT
AGTACACACAAGGTGTACTGAACTGTAATCTATAAATTCATGTACATGTATGCTCATACGAACTG
TAAATGGTAAGCTTCTCCAAGCTGAATAACTGTAAGCTCTTCCGAGCTGAATAATGGTAAGTTCA
TACGAGCTGAACATCAATAAGCTCATAAGAGCTAAAATCGGTAACCCTAATGACATGTCATTTGA
ATCCTACGAATTCTTAAGGTTCAAACAGGGTTAGATAATCGTCGTACGTCATTGGATATGCAATC
GGTATTCATATATGATGATTACACACTTCACAAACATATAATTCAATTTAAAACATATAAATGTA
CAATTTAATTACACGAACTTACCTCGACGAATGTACGTAGATACGGAGGCGACTAATTCGAGATT
TTATCTTTGCCTTAATCTAACGTCGTATGAGGTCTAACCGGATCTATACAAATAAATTTAACTCA
ATTCAATATAATTCACATTCAAATTAGTCCAACACAAGTTTTTGGAAAAATTACCATTTTGCCCC
TATACTTTTAATTCTTTACAATTTAGTCCTTATCTCATAAAAATGGAAATTTTTAT
Found at i:77196409 original size:17 final size:17
Alignment explanation
Indices: 77196380--77196435 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
77196370 TGACCCTTAA
*
77196380 ATAAATTATTAAAAATT
1 ATAAAATATTAAAAATT
*
77196397 CATAAAA-ATTAAAAACT
1 -ATAAAATATTAAAAATT
*
77196414 ATAAAATTTTAAAAATT
1 ATAAAATATTAAAAATT
77196431 A-AAAA
1 ATAAAA
77196436 CTTTTTCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.30
17 18 0.55
18 5 0.15
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAATATTAAAAATT
Found at i:77207085 original size:15 final size:16
Alignment explanation
Indices: 77207062--77207094 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77207052 TTTAACAATA
*
77207062 TAAATAAATAA-AATT
1 TAAAAAAATAATAATT
77207077 TAAAAAAATAATAATT
1 TAAAAAAATAATAATT
77207093 TA
1 TA
77207095 CTCTTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TAAAAAAATAATAATT
Found at i:77214599 original size:6 final size:6
Alignment explanation
Indices: 77214579--77214621 Score: 68
Period size: 6 Copynumber: 7.0 Consensus size: 6
77214569 TTTACGTCAA
*
77214579 AATTTT AATTAAT AATTAT AATTAT AATTAT AATTAT AATTAT
1 AATTAT AATT-AT AATTAT AATTAT AATTAT AATTAT AATTAT
77214622 TACGATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
AATTAT
Found at i:77215840 original size:14 final size:14
Alignment explanation
Indices: 77215804--77215840 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
77215794 TGCTGCCATT
*
77215804 TTATTATTATATTG
1 TTATTATTTTATTG
*
77215818 ATATTATTTTATTG
1 TTATTATTTTATTG
77215832 TTATTATTT
1 TTATTATTT
77215841 GGATATTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (14 bp):
TTATTATTTTATTG
Found at i:77218078 original size:17 final size:17
Alignment explanation
Indices: 77218052--77218091 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
77218042 AGAAACTTCT
77218052 AATT-ATTTATAAATTA
1 AATTGATTTATAAATTA
77218068 AATTGATTTATAAATTA
1 AATTGATTTATAAATTA
77218085 AATTGAT
1 AATTGAT
77218092 GTTTTGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
AATTGATTTATAAATTA
Found at i:77225198 original size:40 final size:40
Alignment explanation
Indices: 77225101--77225247 Score: 127
Period size: 40 Copynumber: 3.7 Consensus size: 40
77225091 GTGCTCAGAA
* * * * *
77225101 GAGCCATACCTACTGAATATATTAAAACGTATGCGCTTTC
1 GAGCCACACCTACTGAATCTACTAAAACATATGCGTTTTC
*** * *
77225141 GA-CTTGTACTTACTGAATCTACTGAAACATATGCGCTTTT-
1 GAGC-CACACCTACTGAATCTACTAAAACATATGCG-TTTTC
* * * *
77225181 GAGCCACGCCTATTGAATCTACTAAAACGTATGTGTTTTC
1 GAGCCACACCTACTGAATCTACTAAAACATATGCGTTTTC
*
77225221 GAGCCATACCTACTGAATCTACTAAAA
1 GAGCCACACCTACTGAATCTACTAAAA
77225248 AGAATACTCT
Statistics
Matches: 83, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
39 5 0.06
40 74 0.89
41 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (40 bp):
GAGCCACACCTACTGAATCTACTAAAACATATGCGTTTTC
Found at i:77226827 original size:20 final size:20
Alignment explanation
Indices: 77226799--77226837 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
77226789 AAACATACAT
* *
77226799 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
77226819 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
77226838 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:77228042 original size:42 final size:42
Alignment explanation
Indices: 77227974--77228100 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
77227964 CTTCGTTTTC
* * * *
77227974 TCGATGCCATAGTTCAACTATTGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACAT-A
* *
77228017 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACATA
77228058 TCGATGCCATAGCTCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCTCAGCTATGGTCTTACAC-ATATTCACATA
77228099 TC
1 TC
77228101 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.14
42 62 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCTCAGCTATGGTCTTACACATATTCACATA
Found at i:77228160 original size:47 final size:46
Alignment explanation
Indices: 77228059--77228182 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
77228049 ATTCATATAT
* * * * * *
77228059 CGATGCCATAGCTCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
77228105 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
77228152 CGATGCCATATCCTAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
77228183 GAAATCACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:77228242 original size:31 final size:31
Alignment explanation
Indices: 77228207--77228385 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
77228197 CTTGTCACTT
*
77228207 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
77228238 GTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77228269 GTAGCAG-AGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77228299 GTAGCCGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77228330 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77228361 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
77228386 TGTCATTTGT
Statistics
Matches: 135, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
30 27 0.20
31 108 0.80
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:77228292 original size:61 final size:62
Alignment explanation
Indices: 77228207--77228385 Score: 288
Period size: 61 Copynumber: 2.9 Consensus size: 62
77228197 CTTGTCACTT
* * * * *
77228207 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77228269 GTAGCAG-AGCTACCACTTTTCACTGATCAGGTAGCCGAAACTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77228330 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACT
77228386 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
61 56 0.52
62 52 0.48
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (62 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:77228364 original size:92 final size:93
Alignment explanation
Indices: 77228207--77228385 Score: 288
Period size: 92 Copynumber: 1.9 Consensus size: 93
77228197 CTTGTCACTT
* * * * *
77228207 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATTAGGTA
1 GTAGCCGAAACTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
77228272 GCAG-AGCTACCACTTTTCACTGATCAG
66 GCAGAAGCTACCACTTTTCACTGATCAG
*
77228299 GTAGCCGAAACTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCGAAACTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
*
77228364 GCTGAAGCTACCACTTTTCACT
66 GCAGAAGCTACCACTTTTCACT
77228386 TGTCATTTGT
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 62 0.78
93 17 0.22
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (93 bp):
GTAGCCGAAACTACCACTATTCACTGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAGGTA
GCAGAAGCTACCACTTTTCACTGATCAG
Found at i:77228467 original size:50 final size:51
Alignment explanation
Indices: 77228361--77228489 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
77228351 CACTGATCAG
* * *
77228361 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
77228412 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
77228462 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
77228490 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:77235790 original size:21 final size:20
Alignment explanation
Indices: 77235766--77235804 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
77235756 GGCTTCCCCG
*
77235766 ATGGCCACACGGGCTTGTGCC
1 ATGG-CACACGGGCGTGTGCC
*
77235787 ATGGCACGCGGGCGTGTG
1 ATGGCACACGGGCGTGTG
77235805 GATTTGGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.13, C:0.28, G:0.41, T:0.18
Consensus pattern (20 bp):
ATGGCACACGGGCGTGTGCC
Found at i:77240741 original size:132 final size:132
Alignment explanation
Indices: 77240599--77240843 Score: 348
Period size: 132 Copynumber: 1.9 Consensus size: 132
77240589 ACGGAATCTC
* * * *
77240599 GAAGGAATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCTAACACGTTAGGGCACAATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAAAGAGAAATTGCAACCCAACACGTTAGGGCACAATTCC
* * * *
77240664 GCGAATTGCTAAATATCAAA-CTTTGCCTTCGTTTTAAAGACTTTTTAAGAGGCATGAGTGAAAG
66 GCGAATTGCCAAATATCAAATC-TCGCCTTCGCTTTAAAGAATTTTTAAGAGGCATGAGTGAAAG
77240728 TTT
130 TTT
* * * *
77240731 GAAGGGATATTCGATTATTTCGAGCAAAAGCGAAATTGCAACCCAACATGTTAGGGCACTATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAAAGAGAAATTGCAACCCAACACGTTAGGGCACAATTCC
* *
77240796 GCGAATTGCCAAATATCGAATCTCGTCTTCGCTTTAAAGAATTTTTAA
66 GCGAATTGCCAAATATCAAATCTCGCCTTCGCTTTAAAGAATTTTTAA
77240844 ATGAATACTT
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
132 97 0.99
133 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (132 bp):
GAAGGAATATTCGATTATTTCGAGCAAAAGAGAAATTGCAACCCAACACGTTAGGGCACAATTCC
GCGAATTGCCAAATATCAAATCTCGCCTTCGCTTTAAAGAATTTTTAAGAGGCATGAGTGAAAGT
TT
Found at i:77242437 original size:10 final size:10
Alignment explanation
Indices: 77242422--77242448 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
77242412 ACCATTCACA
77242422 AAAAAAAAAG
1 AAAAAAAAAG
77242432 AAAAAAAAAG
1 AAAAAAAAAG
77242442 AAAAAAA
1 AAAAAAA
77242449 CTAGGACACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:77243606 original size:44 final size:44
Alignment explanation
Indices: 77243537--77244151 Score: 756
Period size: 44 Copynumber: 14.0 Consensus size: 44
77243527 AGATTCACCC
* * * * **
77243537 TCTTTGATCTGCTTCACTGACAATACAAAGATACCAAATCTGCTA
1 TCTTCGATCTGC-TCCCTGCCAATACAGAGACGCCAAATCTGCTA
* *
77243582 TCTTCGATCTGTTCCCTGCCAATACAGAGACGCCAAATCCGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
** * * *
77243626 TCTTCGATCTGCTATCTGTCAACACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
77243670 TCCTT-GATCTGCTCTCC-GCCAATACAGAGACGCCAAATCTGCTA
1 T-CTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATCTGCTA
*
77243714 TCTTCTATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
*** * * * * *
77243758 TCTTCGATCTGCTTTTTGTCAACACAGAGATGCCAAATCTACCA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
*
77243802 TCCTT-GATCTGCTCTCC-GCCAATACAGAGACCCCAAATCTGCTA
1 T-CTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATCTGCTA
** * * *
77243846 TCTTCGATCTGCTTTCTGCCAATATAGAGATGCCAAATCTACTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* *
77243890 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
*
77243934 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGTTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* * *
77243978 TCTTCGATCTGCTCTCTGCCAATACAGAGACACCAAATCTACTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* * * *
77244022 TCCTCGATCTGCTCCCTACCAATACAGAGACGCCAAATTTGTTA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
* *
77244066 TCTTCGATCTGCTCTCC-GCCAATATAGAGACACCAAATCTGCTA
1 TCTTCGATCTGCTC-CCTGCCAATACAGAGACGCCAAATCTGCTA
*
77244110 TCTTCGATCTGC-CCTCTGACAATACAGAGACGCCAAATCTGC
1 TCTTCGATCTGCTCC-CTGCCAATACAGAGACGCCAAATCTGC
77244152 AGGATTTGCC
Statistics
Matches: 488, Mismatches: 71, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.00
43 11 0.02
44 457 0.94
45 19 0.04
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (44 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTA
Found at i:77246505 original size:28 final size:22
Alignment explanation
Indices: 77246447--77246504 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
77246437 CACGCATGCG
77246447 ATATTAAACGTAAATAATGATA
1 ATATTAAACGTAAATAATGATA
77246469 ATATTAAACGTAAATAATGATA
1 ATATTAAACGTAAATAATGATA
*
77246491 ATATTAAACATAAA
1 ATATTAAACGTAAA
77246505 CAGGTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (22 bp):
ATATTAAACGTAAATAATGATA
Found at i:77247855 original size:94 final size:93
Alignment explanation
Indices: 77247664--77247993 Score: 299
Period size: 94 Copynumber: 3.6 Consensus size: 93
77247654 GTGAACCCAC
* * * *
77247664 GGCTCAACTCACCTCTCGCAATATGAGTTGA---TCTTTGAAAAATATAAATTGAGAAAACATAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAGAAATTGAAAAAACAGAA
**
77247726 ATTAAAAATACCTCAGCATGTGAGCCAA
66 ATTAAAAATACCTCAGCACATGAGCCAA
*
77247754 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAA-AGCGGAAATT-AAAAAACA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATA---GAAATTGAAAAAACA
* * * *
77247817 GAAATTGAAAGTAGCTCATCACATGAGCCAA
63 GAAATTAAAAATACCTCAGCACATGAGCCAA
* * * * *
77247848 GGCTCAACTCACTTCTCGCAATATCAGTTG---GTTTTTGAAAAAT--AATTTG-AAAAACAGAT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAGAAATTGAAAAAACAGAA
* * * *
77247907 TTTGAAAATACCTC-G-ACATGTGACCCGA
66 ATTAAAAATACCTCAGCACA--TGAGCCAA
* * * *
77247935 GGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTTTGACAAACAGAAATTGAAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTT-GATTTTTTTTGAAAAATAGAAATTGAAAA
77247994 TACCTCAGCG
Statistics
Matches: 193, Mismatches: 30, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
85 3 0.02
87 56 0.29
88 1 0.01
90 31 0.16
91 20 0.10
92 1 0.01
93 14 0.07
94 62 0.32
95 5 0.03
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (93 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAATAGAAATTGAAAAAACAGAA
ATTAAAAATACCTCAGCACATGAGCCAA
Found at i:77247938 original size:87 final size:87
Alignment explanation
Indices: 77247651--77247970 Score: 318
Period size: 87 Copynumber: 3.6 Consensus size: 87
77247641 TAAAACTTGA
* * *
77247651 CATGTGAACCCACGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAATATAAATTGA
1 CATGTG-ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTG-AAAA-ATAAATTGA
* *
77247716 GAAAACATAAATTAAAAATACCTCAG
63 -AAAACAGAAATTGAAAATACCTCAG
* * * *
77247742 CATGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAAAGCGGAAA
1 CATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG----GTTTTTGAAAAA---TAAA
* * * *
77247807 TTAAAAAACAGAAATTGAAAGTAGCTCAT
59 TTGAAAAACAGAAATTGAAAATACCTCAG
** * * * *
77247836 CACATGAGCCAAGGCTCAACTCACTTCTCGCAATATCAGTTGGTTTTTGAAAAATAATTTGAAAA
1 CATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAAATTGAAAA
**
77247901 ACAGATTTTGAAAATACCTC-G
66 ACAGAAATTGAAAATACCTCAG
* *
77247922 ACATGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTT
1 -CATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTT
77247971 TTTTGACAAA
Statistics
Matches: 188, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
87 65 0.35
90 44 0.23
91 6 0.03
92 1 0.01
93 4 0.02
94 62 0.33
95 6 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (87 bp):
CATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAAATTGAAAA
ACAGAAATTGAAAATACCTCAG
Found at i:77248397 original size:73 final size:73
Alignment explanation
Indices: 77247893--77248885 Score: 870
Period size: 73 Copynumber: 13.0 Consensus size: 73
77247883 TGAAAAATAA
* ** * *
77247893 TTTGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCACAAT
1 TTTGACAAACAGAAATTGAAAATACCTCAG-C--GTGCCCCGAGGCTCAACTCACCTCTCGCAAT
*
77247957 ATGAGTTGGTTTTTT
63 ATGAGTT-G---ATT
* *
77247972 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
*
77248037 AGTTGGTTTT
66 AGTT-G-ATT
**
77248047 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
77248112 AGTTGA-T
66 AGTTGATT
* ** * *
77248119 TTTGACAAACAGAAACAGAAATTGAAAATACCTCAACACGTGAGCCGAGGCTCAACTCACTTCTT
1 TTTG----AC--AAACAGAAATTGAAAATACCTC-A-GCGTGCCCCGAGGCTCAACTCACCTCTC
77248184 GCAATATGAGTTGATTTT
58 GCAATATGAGTTGA--TT
* * * * * *
77248202 TTTGAC-AATAGAAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCATCTCTCGCAATATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
77248266 AGTTGATTCT
66 AGTTGA-T-T
* *
77248276 TTTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC-CTAACTCACCTCCCGCAATA
1 TTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTC-AACTCACCTCTCGCAATA
77248339 TGAGTTGATT
64 TGAGTTGATT
* * * *
77248349 TTTGACAAACAGCAATTGAAAATACCTCAACGTGCCCCGAGGCTTAACTCACCTCCCGCAATATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
77248414 AGTTGATT
66 AGTTGATT
** * * ** *
77248422 TAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCAAGGCTCAACTCACC
1 T-----TTGAC----AAACAGAAATTGAAAAT-ACCTC-A-GCGTGCCCCGAGGCTCAACTCACC
*
77248486 TATCGCAATATGAGTTGATTTT
54 TCTCGCAATATGAGTTGA--TT
** * * * *
77248508 TTTGA-AAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCCCGCAACATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
77248572 AGTTGATT
66 AGTTGATT
* * * *
77248580 TTTGACAATCAGCAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
77248645 AGTTGATT
66 AGTTGATT
** * * ** * *
77248653 TAAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCAAGGCTCAACTCAT
1 T------TTGAC----AAACAGAAATTGAAAAT-ACCTC-A-GCGTGCCCCGAGGCTCAACTCAC
77248717 CTCTCGCAATATGAGTTGATTTT
53 CTCTCGCAATATGAGTTGA--TT
** * * * * *
77248740 TTTGA-AAGTAGAATTTGAAAATACCTCGGCGTGCTCCGAGGCTCAACTCACCTCCCGCAACATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
*
77248804 AGTTAATT
66 AGTTGATT
* * *
77248812 TTTGACAAACAGTAATTGAAAATACCTCAGCGTGCTCCGAGGCTCAACTCACCTCCCGCAATATG
1 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
77248877 AGTTGATT
66 AGTTGATT
77248885 T
1 T
77248886 AAAAAAATAG
Statistics
Matches: 761, Mismatches: 102, Indels: 108
0.78 0.11 0.11
Matches are distributed among these distances:
72 19 0.02
73 190 0.25
74 118 0.16
75 126 0.17
76 52 0.07
77 38 0.05
78 25 0.03
79 32 0.04
80 36 0.05
81 4 0.01
82 18 0.02
83 23 0.03
84 38 0.05
85 36 0.05
86 3 0.00
87 3 0.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (73 bp):
TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:77248483 original size:306 final size:300
Alignment explanation
Indices: 77247908--77248653 Score: 980
Period size: 306 Copynumber: 2.4 Consensus size: 300
77247898 AAAACAGATT
* * *
77247908 TTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTT
1 TTGAAAATACCTCAG-CA--TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-G--ATTT
* *
77247972 TTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATG
60 TTTGA-AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCCCGCAATATG
* * **
77248037 AGTTGGTTTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTC
124 AGTT-G-ATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTC
* ** * *
77248102 TCGCAATATGAGTTGATTTTGACAAACAGAAACAGAAATTGAAAATACCTCAACACGTGAGCCGA
187 CCGCAATATGAGTTGATTTAAACAAACAAAAACAGAAATTGAAAATACCTCAACACGTGAGCCAA
* * *
77248167 GGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGACAA-TAGAAA
252 GGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGA-AAGTAGAAA
* * * *
77248216 TTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGA
1 TTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGA
77248281 AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC-CTAACTCACCTCCCGCAATATGAGTT
65 AAA-CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC-AACTCACCTCCCGCAATATGAGTT
* *
77248345 GATTTTTGACAAACAGCAATTGAAAATACCTCAACGTGCCCCGAGGCTTAACTCACCTCCCGCAA
128 GATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCCCGCAA
* *
77248410 TATGAGTTGATTTAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCAAG
193 TATGAGTTGATTT--AAACA-A-ACAAAAACAGAAATTGAAAAT-ACCTCAACACGTGAGCCAAG
*
77248474 GCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAGTAGAAT
253 GCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAGTAGAAA
* * * *
77248522 TTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGA-TTTTTGAC
1 TTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-
* * * *
77248586 AATCAGCAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGA
65 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGA
77248651 TTT
130 TTT
77248654 AAAAAACAGA
Statistics
Matches: 389, Mismatches: 37, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
302 70 0.18
303 7 0.02
304 131 0.34
305 8 0.02
306 158 0.41
307 1 0.00
308 13 0.03
309 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (300 bp):
TTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGAT
TTTTGACAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCCCGCAATAT
GAGTTGATTTAAACAAACAAAAACAGAAATTGAAAATACCTCAACACGTGAGCCAAGGCTCAACT
CACCTATCGCAATATGAGTTGATTTTTTTGAAAGTAGAAA
Found at i:77248686 original size:232 final size:231
Alignment explanation
Indices: 77248011--77248985 Score: 1294
Period size: 232 Copynumber: 4.2 Consensus size: 231
77248001 GCGTGCCCTG
* * *
77248011 AGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTTTGACAAACAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGCAGAAATTGAAAATACCTCA
** * *
77248076 GCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAACAGAAA
65 GCGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAG---C---AA
** * ** *
77248140 TTGAAAATACCTCAACACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTT---T
124 TTGAAAATACCTC-A-ACGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAA
*** * * * * ** *
77248202 TTTGAC-----AATAGAAATTGCAA-TTACCTCAGCA--TGTCCCG
187 ACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCA
* *
77248240 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAGCAGAAATTGAAAATACCTCA
* *
77248305 GCGTGCCCTGAGGC-CTAACTCACCTCCCGCAATATGAGTTGATTTTTGACAAACAGCAATTGAA
65 GCGTGCCCCGAGGCTC-AACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAA
*
77248369 AATACCTCAACGTGCCCCGAGGCTTAACTCACCTCCCGCAATATGAGTTGATTTAAAAACAGACA
129 AATACCTCAACGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAACAGACA
77248434 TAAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCA
194 TAAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCA
* * * *
77248472 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTGAAAATACCTCAG
*
77248537 CGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGATTTTTGACAATCAGCAATTGAAAA
66 CGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAA
* *
77248602 TACCTTAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAACAGACAT
131 TACCTCAACGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTT-AAAAACAGACAT
77248667 AAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCA
195 AAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCA
* * * *
77248704 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTGAAAATACCTCAG
* * *
77248769 CGTGCTCCGAGGCTCAACTCACCTCCCGCAACATGAGTTAATTTTTGACAAACAGTAATTGAAAA
66 CGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAA
* * *
77248834 TACCTCAGCGTGCTCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAAAATAGACA
131 TACCTCAACGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTT--AAAAACAGACA
*
77248899 TAAAAATAGAAATTGAAAGTGACTCAACACGTGA-CCA
194 TAAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCA
*
77248936 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAA
77248986 CGAAACATCC
Statistics
Matches: 679, Mismatches: 50, Indels: 31
0.89 0.07 0.04
Matches are distributed among these distances:
222 39 0.06
223 1 0.00
224 15 0.02
225 3 0.00
227 1 0.00
228 1 0.00
229 96 0.14
230 32 0.05
231 133 0.20
232 314 0.46
233 44 0.06
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (231 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGCAGAAATTGAAAATACCTCAG
CGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGATTTTTGACAAACAGCAATTGAAAA
TACCTCAACGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTAAAAACAGACATA
AAAACAGAAATTGAAAGTGACTCAACACGTGAGCCA
Found at i:77248784 original size:306 final size:294
Alignment explanation
Indices: 77247907--77248885 Score: 972
Period size: 306 Copynumber: 3.2 Consensus size: 294
77247897 AAAAACAGAT
* * * *
77247907 TTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTT
1 TTTGAAAATACCTCAG-C--GTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTT-G---AT
* *
77247971 TTTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATAT
59 TTTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCCCGCAATAT
* *
77248036 GAGTTGGTTTTTTTGACAAACAGAAATTGAAAATACCTCAGCGT-GCCTTGAGGCTCAACTCACC
124 GAGTT-G-ATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGGCC--GAGGCTCAACTCACC
* *
77248100 TCTCGCAATATGAGTTGATTTTGACAAACAGAAACAGAAATTGAAAATACCTCAACACGTGAGCC
185 TCTCGCAATATGAGTTGATTTT--CATA-A-AAGCAGAAATTGAAAATACCTC-ACACGTGAGCC
* *
77248165 GAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGACAATAGAA
245 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAATAGAA
* * * * * * *
77248215 ATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTG
1 TTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGA-T-TTTTG
77248280 A-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC-CTAACTCACCTCCCGCAATATGAG
64 ACAAA-CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC-AACTCACCTCCCGCAATATGAG
* * * *
77248343 TTGATTTTTGACAAACAGCAATTGAAAATACCTCAACGTGCCCCGAGGCTTAACTCACCTCCCGC
127 TTGATTTTTGACAAACAGAAATTGAAAATACCTCAACGTG-GCCGAGGCTCAACTCACCTCTCGC
* * * *
77248408 AATATGAGTTGATTTAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCA
191 AATATGAGTTGATTT--------TCATAAAAGCAGAAATTGAAAAT-ACCTC-ACACGTGAGCCG
*
77248472 AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGA-AAGTAGAA
246 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA-TAGAA
* *
77248521 TTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCCCGCAACATGAGTTGATTTTTGAC
1 TTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAC
* * * *
77248586 AATCAGCAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGA
66 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGA
** * *
77248651 TTTAAAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCCAAGGCTCAACTC
131 TTT------TTGAC----AAACAGAAATTGAAAAT-ACCTC-A-ACGTG-GCCGAGGCTCAACTC
* ** * * * ** **
77248715 ATCTCTCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTC-GGCGTGCTCCGA
182 ACCTCTCGCAATATGAGTTGATTTTCATAAAAGCAGAAATTGAAAATACCTCACACGTGAGCCGA
* * * *
77248779 GGCTCAACTCACCTCCCGCAACATGAGTT-A-ATTTTTGACAAACAGTAA
247 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC-AATAG-AA
*
77248827 -TTGAAAATACCTCAGCGTGCTCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTT
1 TTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTT
77248886 AAAAAAATAG
Statistics
Matches: 568, Mismatches: 67, Indels: 75
0.80 0.09 0.11
Matches are distributed among these distances:
302 67 0.12
303 6 0.01
304 137 0.24
305 66 0.12
306 193 0.34
307 3 0.01
308 33 0.06
309 1 0.00
310 3 0.01
314 18 0.03
315 2 0.00
316 39 0.07
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (294 bp):
TTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAC
AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGA
TTTTTGACAAACAGAAATTGAAAATACCTCAACGTGGCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTCATAAAAGCAGAAATTGAAAATACCTCACACGTGAGCCGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTTGACAATAGAA
Found at i:77258775 original size:20 final size:20
Alignment explanation
Indices: 77258745--77258789 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
77258735 CTGTTTTATT
77258745 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
77258764 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
77258784 ATGGGC
1 ATGGGC
77258790 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:77258945 original size:62 final size:61
Alignment explanation
Indices: 77258810--77258954 Score: 161
Period size: 61 Copynumber: 2.4 Consensus size: 61
77258800 ATATCTCGAC
* * * * * *
77258810 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGACTAGACCCAGTATACACTGATA
*
77258871 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGACTAAGACCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGACT-AGACCCAGTAT-ACACTGATA
*
77258932 TTCTGAATAGGGCT-TAGGCCCAG
1 TTGT-AATAGGGCTAT-GGCCCAG
77258955 TAAAGCTTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 42 0.58
62 30 0.42
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGACTAGACCCAGTATACACTGATA
Found at i:77263482 original size:20 final size:20
Alignment explanation
Indices: 77263452--77263496 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
77263442 CTGTTTTATT
77263452 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
77263471 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
77263491 ATGGGC
1 ATGGGC
77263497 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:77263626 original size:28 final size:27
Alignment explanation
Indices: 77263586--77263638 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
77263576 TATTGTAATA
* *
77263586 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAG-TTAACACTGATAT
77263614 GGGCTAAGGCCCAGTTAACACTGAT
1 GGGCTAAGGCCCAGTTAACACTGAT
77263639 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (27 bp):
GGGCTAAGGCCCAGTTAACACTGATAT
Found at i:77263652 original size:62 final size:61
Alignment explanation
Indices: 77263517--77263661 Score: 170
Period size: 61 Copynumber: 2.4 Consensus size: 61
77263507 ATATCTCGAC
* * * *
77263517 TTGTAATAGGGCTACGGCCCAGACTGATACTAATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTATGGCCCAGACTAATACTAATATGGGCTAGGCCCAGTATACACTGATA
* *
77263578 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTATGGCCCAGACTAATACTAATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
77263639 TTCTGAATAGGGCT-TAGGCCCAG
1 TTGT-AATAGGGCTAT-GGCCCAG
77263662 TAAAGCTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
61 42 0.58
62 31 0.42
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTATGGCCCAGACTAATACTAATATGGGCTAGGCCCAGTATACACTGATA
Found at i:77264936 original size:21 final size:20
Alignment explanation
Indices: 77264912--77264950 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
77264902 TATTGAAACT
*
77264912 AAAACTAATACTAATAATAGC
1 AAAACTAATA-AAATAATAGC
77264933 AAAACTAATAAAATAATA
1 AAAACTAATAAAATAATA
77264951 TAGTACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAACTAATAAAATAATAGC
Found at i:77265027 original size:22 final size:22
Alignment explanation
Indices: 77264999--77265041 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
77264989 ATACGTACAT
*
77264999 ATAATATAATATTAAA-ATATAC
1 ATAATAT-ATATAAAACATATAC
77265021 ATAATATATATAAAACATATA
1 ATAATATATATAAAACATATA
77265042 TTAAGATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
ATAATATATATAAAACATATAC
Found at i:77265962 original size:11 final size:11
Alignment explanation
Indices: 77265929--77265969 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
77265919 AAATCATTTT
77265929 GAAGAGAGAAA
1 GAAGAGAGAAA
*
77265940 GAA-A-AAAAA
1 GAAGAGAGAAA
*
77265949 GAAGGGAGAAA
1 GAAGAGAGAAA
77265960 GAAGAGAGAA
1 GAAGAGAGAA
77265970 GGGAGGGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:77275189 original size:163 final size:163
Alignment explanation
Indices: 77274919--77275244 Score: 607
Period size: 163 Copynumber: 2.0 Consensus size: 163
77274909 CAACAGATTC
*
77274919 CTCAATCTTCACCAATTATAGGCTCATATAGATCAAGTTCGGTTCGGGGGGATACATTTCCCTAT
1 CTCAATCTTCACCAATTATAGGCTCATATAGATCAAGTTCGGGTCGGGGGGATACATTTCCCTAT
77274984 GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCTAGAAGCAATCCACTA
66 GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCTAGAAGCAATCCACTA
77275049 GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
131 GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
* *
77275082 CTCAATCTTCACCCATTATAGGCTCATATAGATCGAGTTCGGGTCGGGGGGATACATTTCCCTAT
1 CTCAATCTTCACCAATTATAGGCTCATATAGATCAAGTTCGGGTCGGGGGGATACATTTCCCTAT
* *
77275147 GACCATGCGGAGATGAAAATCTCATGAAATCATAGGTACGGATGTACCCTAGAAGCAATCCACTA
66 GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCTAGAAGCAATCCACTA
77275212 GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
131 GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
77275245 TAGTTTCTTA
Statistics
Matches: 158, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
163 158 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (163 bp):
CTCAATCTTCACCAATTATAGGCTCATATAGATCAAGTTCGGGTCGGGGGGATACATTTCCCTAT
GACCATGCGGAGATGAAAACCTCACGAAATCATAGGTACGGATGTACCCTAGAAGCAATCCACTA
GCTCATGCAGAGGTGAAAAACCTCACGAAAGCG
Found at i:77276186 original size:131 final size:132
Alignment explanation
Indices: 77276001--77276340 Score: 359
Period size: 132 Copynumber: 2.6 Consensus size: 132
77275991 TGAAAACCTA
* * * ** * * * *
77276001 AAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATT-CT
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* ** * ** * *
77276065 CGAATTGTCAAACA-CCGAGTATTGCCTTCGTTTTAGAGGA-TTTTT-AGAAGAC-CTTAATGGA
66 CGAATTGCCAAACATCAAACT-TTGCCTTCGTTTTA-AAAACTTTTTAAG-AGACAC-GAATGAA
77276126 A-TCTTG
127 AGT-TTG
* * *
77276132 AAGGGATATTTGATTATTTTGAGCAAATGAGAAATTGCAACCTAACACGTTAGGGCACGATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* * *
77276197 CGAATTGCCAAATATCAAACTTTGCCTTCGTTTTAAAAACTTTTTAAGAGGCACGAGTGAAAGTT
66 CGAATTGCCAAACATCAAACTTTGCCTTCGTTTTAAAAACTTTTTAAGAGACACGAATGAAAGTT
77276262 TG
131 TG
* * *
77276264 AAGGGATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
77276329 CGAATTGCCAAA
66 CGAATTGCCAAA
77276341 TATCGAATCT
Statistics
Matches: 174, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
131 53 0.30
132 114 0.66
133 7 0.04
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (132 bp):
AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
CGAATTGCCAAACATCAAACTTTGCCTTCGTTTTAAAAACTTTTTAAGAGACACGAATGAAAGTT
TG
Found at i:77276358 original size:132 final size:132
Alignment explanation
Indices: 77276129--77276375 Score: 372
Period size: 132 Copynumber: 1.9 Consensus size: 132
77276119 TAATGGAATC
* * * *
77276129 TTGAAGGGATATTTGATTATTTTGAGCAAATGAGAAATTGCAACCTAACACGTTAGGGCACGATT
1 TTGAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATT
* *
77276194 CCGCGAATTGCCAAATATCAAACTTTGCCTTCGTTTTAAA-AACTTTTTAAGAGGCACGAGTGAA
66 CCGCGAATTGCCAAATATCAAACTTCGCCTTCGCTTTAAAGAA-TTTTTAAGAGGCACGAGTGAA
77276258 AGT
130 AGT
* *
77276261 TTGAAGGGATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATT
1 TTGAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATT
* *
77276326 CCGCGAATTGCCAAATATCGAA-TCTCGTCTTCGCTTTAAAGAATTTTTAA
66 CCGCGAATTGCCAAATATCAAACT-TCGCCTTCGCTTTAAAGAATTTTTAA
77276376 ATGAATACTC
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 1 0.01
132 100 0.97
133 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (132 bp):
TTGAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATT
CCGCGAATTGCCAAATATCAAACTTCGCCTTCGCTTTAAAGAATTTTTAAGAGGCACGAGTGAAA
GT
Found at i:77281792 original size:61 final size:61
Alignment explanation
Indices: 77281697--77281819 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
77281687 AATTTTGCCC
77281697 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
1 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
*
77281758 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCTCTACTTTAATTTAAGGAATGT
1 ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
77281819 A
1 A
77281820 ATGTTTCTAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (61 bp):
ACAATCCCACTACTCTTCAAACTTTTGCAACTGGTCCCCCCTACTTTAATTTAAGGAATGT
Found at i:77281932 original size:20 final size:20
Alignment explanation
Indices: 77281891--77281934 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
77281881 GTTAATTAAA
*
77281891 TAATTTTTATCAATTGAACTT
1 TAATTTTTA-CAATTAAACTT
77281912 TAATTTTTA-AATTAAACCTT
1 TAATTTTTACAATTAAA-CTT
77281932 TAA
1 TAA
77281935 ATATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 6 0.29
21 9 0.43
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATTTTTACAATTAAACTT
Found at i:77284043 original size:3 final size:3
Alignment explanation
Indices: 77284035--77284064 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
77284025 TCCATTTGGT
77284035 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
77284065 AGTTTGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:77284508 original size:6 final size:6
Alignment explanation
Indices: 77284499--77284523 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
77284489 TATATATGTG
77284499 TGTATA TGTATA TGTATA TGTATA T
1 TGTATA TGTATA TGTATA TGTATA T
77284524 ACCGATTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:77288062 original size:118 final size:115
Alignment explanation
Indices: 77287870--77288301 Score: 403
Period size: 109 Copynumber: 3.9 Consensus size: 115
77287860 CATAACATAC
* * * * *
77287870 GAATAATTGGATAAAACCCAA-TCATGACATAT--GCATATATTAGGACT-AGAGAC-CTACACA
1 GAATAATTGGATAAAATCCAACT-ATGGCAAATGCGCACATATTAGGATTGA-AGACTC-ACACA
*
77287930 TCATAAATGCATATGATAAGACTCAAATTTAGGAACCAATATAAAACACAATGTAT
63 TCATAAATACATATGATAAGACTCAAATTTAGGAACCAATATAAAACACAA---AT
* * *
77287986 GAATAATTGGATAAAGTCCAACCATGGCAAATGCGCACATGTTAGGATTGAAGACTCACACATCA
1 GAATAATTGGATAAAATCCAACTATGGCAAATGCGCACATATTAGGATTGAAGACTCACACATCA
* * * *
77288051 TAGATACATATGATGAGACTCAAATTTAGGAACCAATACAAAACAC-AAC
66 TAAATACATATGATAAGACTCAAATTTAGGAACCAATATAAAACACAAAT
* * * * *
77288100 G--T-A--GGATAAAATTCAACTATGGCAAATGCACACATTTTAGGATTGAAGACCCACACATAA
1 GAATAATTGGATAAAATCCAACTATGGCAAATGCGCACATATTAGGATTGAAGACTCACACATCA
* **
77288160 TAAATACATATGATGAGACTCAAATTTAGGATTCAATAT---ACA-AAAT
66 TAAATACATATGATAAGACTCAAATTTAGGAACCAATATAAAACACAAAT
* * ** * * * *
77288206 GAATAATTGGATAAAACCCATCTATAACAAAT--GCACATATTAAGACTAAAGACTCGCACATCA
1 GAATAATTGGATAAAATCCAACTATGGCAAATGCGCACATATTAGGATTGAAGACTCACACATCA
* * *
77288269 CAAATACATATGATAAGATTCAAATATAGGAAC
66 TAAATACATATGATAAGACTCAAATTTAGGAAC
77288302 TGGATAAAAC
Statistics
Matches: 261, Mismatches: 44, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
106 6 0.02
108 1 0.00
109 136 0.52
111 20 0.08
112 1 0.00
114 2 0.01
116 26 0.10
117 1 0.00
118 66 0.25
119 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (115 bp):
GAATAATTGGATAAAATCCAACTATGGCAAATGCGCACATATTAGGATTGAAGACTCACACATCA
TAAATACATATGATAAGACTCAAATTTAGGAACCAATATAAAACACAAAT
Found at i:77293853 original size:58 final size:58
Alignment explanation
Indices: 77293786--77293921 Score: 218
Period size: 58 Copynumber: 2.3 Consensus size: 58
77293776 CTATGGTTTT
** *
77293786 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGGGCACTCAACTATTCAATCTTA
1 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGAACACCCAACTATTCAATCTTA
*
77293844 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGAACACCCAACTATTCAATCTTG
1 TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGAACACCCAACTATTCAATCTTA
**
77293902 TTTTTTTGTCACCCAACTAT
1 TTTTTTTGTCATTCAACTAT
77293922 CTTGGATTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (58 bp):
TTTTTTTGTCATTCAACTATAAAAAGTTACAAAATGAACACCCAACTATTCAATCTTA
Found at i:77300969 original size:21 final size:22
Alignment explanation
Indices: 77300930--77300970 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
77300920 TTCTAAATAC
77300930 TTTTATAATTTTATAAAAAACA
1 TTTTATAATTTTATAAAAAACA
77300952 TTTTA-AACTTTT-TAAAAAA
1 TTTTATAA-TTTTATAAAAAA
77300971 ATATTATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTTATAATTTTATAAAAAACA
Found at i:77301068 original size:18 final size:18
Alignment explanation
Indices: 77301045--77301094 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
77301035 TTTATTTTTA
77301045 ATTTTT-TATAATTTATAT
1 ATTTTTCTA-AATTTATAT
*
77301063 ATTTTTCTAGATTTATAT
1 ATTTTTCTAAATTTATAT
77301081 ATTATTTCTAAATT
1 ATT-TTTCTAAATT
77301095 CTTTTCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTTTCTAAATTTATAT
Found at i:77306495 original size:30 final size:28
Alignment explanation
Indices: 77306450--77306518 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 28
77306440 AGGAATAAAC
* *
77306450 TATATACAT-AATAGATTTGCAAGGAAATA
1 TATATACATAAATAGATTT-AAAAGAAA-A
77306479 TATATACATAAATAGATTTAAAAGAAAA
1 TATATACATAAATAGATTTAAAAGAAAA
77306507 TATATACATAAA
1 TATATACATAAA
77306519 ACAATATGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 13 0.35
29 15 0.41
30 9 0.24
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (28 bp):
TATATACATAAATAGATTTAAAAGAAAA
Found at i:77306804 original size:24 final size:23
Alignment explanation
Indices: 77306758--77306804 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
77306748 AGTAGATATT
77306758 TAAATAATTTTAAAAAATTAATAC
1 TAAATAATTTTAAAAAA-TAATAC
77306782 TAAATAAATCTTTAAAAAA-AATA
1 TAAAT-AAT-TTTAAAAAATAATA
77306805 AAGAATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 9 0.43
25 3 0.14
26 9 0.43
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (23 bp):
TAAATAATTTTAAAAAATAATAC
Found at i:77308995 original size:29 final size:30
Alignment explanation
Indices: 77308963--77309030 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
77308953 AAGTGCTTCG
77308963 ATAAGGGCCAAAAC-TTTGAGA-GTGCTCAA
1 ATAAGGGCCAAAACTTTTGA-ACGTGCTCAA
* *
77308992 ATAAGAGCCAAACCTTTTTGAACGTGCTCAA
1 ATAAGGGCCAAAAC-TTTTGAACGTGCTCAA
77309023 ATAAGGGC
1 ATAAGGGC
77309031 TTCTCAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 12 0.36
30 1 0.03
31 20 0.61
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (30 bp):
ATAAGGGCCAAAACTTTTGAACGTGCTCAA
Found at i:77312817 original size:17 final size:17
Alignment explanation
Indices: 77312773--77312820 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
77312763 TTTTATGAAT
77312773 TTTTTATAATTTTTTTG
1 TTTTTATAATTTTTTTG
***
77312790 -AAATATGAATTTTTTTG
1 TTTTTAT-AATTTTTTTG
77312807 TTTTTATAATTTTT
1 TTTTTATAATTTTT
77312821 AAATTATTTG
Statistics
Matches: 23, Mismatches: 6, Indels: 4
0.70 0.18 0.12
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
TTTTTATAATTTTTTTG
Found at i:77313834 original size:18 final size:16
Alignment explanation
Indices: 77313805--77313839 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
77313795 ATTAAAAATA
77313805 TTTTTTAATAATTAAT
1 TTTTTTAATAATTAAT
77313821 TTTTTTAAATTAATTAAT
1 TTTTTT-AA-TAATTAAT
77313839 T
1 T
77313840 ATTGATGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 2 0.12
18 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTTTAATAATTAAT
Found at i:77315849 original size:17 final size:17
Alignment explanation
Indices: 77315827--77315860 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
77315817 ATATTACAAA
77315827 ATCCAATCTTCTAAGAT
1 ATCCAATCTTCTAAGAT
77315844 ATCCAATCTTCTAAGAT
1 ATCCAATCTTCTAAGAT
77315861 TAGTTTCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (17 bp):
ATCCAATCTTCTAAGAT
Found at i:77318318 original size:258 final size:256
Alignment explanation
Indices: 77317835--77318349 Score: 631
Period size: 258 Copynumber: 2.0 Consensus size: 256
77317825 AAAATTTCAA
* * * * * *
77317835 ATTTATGTGAGAATTGATATGTATCCATAAGAAATAAATTATTAGCTTTGAGAACCCAATAATTC
1 ATTTATGTAAGAATTGACATGTATACACAAGAAATAAATTATTAGCTTTAAGAACCCAATAACTC
* * *
77317900 TAATGGTGCAGTTGGATTTCAATGTTCCTCTAATACTACACATTTAGACCACTTTATTGCTCGAT
66 TAAAGGTGCAGTTGGATTTCAATGTTCCTCTAATACTACACATTCAGACAACTTTATTGCTCGAT
** * * *
77317965 TGTGTTGTTGCCAACTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTGTCACACTAG
131 CATGTTGCT-CAAACTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTATCACACTAG
* * *
77318030 ATTTGCTTTCTTTTAGTTTGTTTATTTTTTCCTTCCGTAAGGTTTCACCAACGATAATTGATT
195 ATTTACTTTCTTTTAGTTGGTTTATTTTTT-CTTCCGTAAGGTTTCACCAACGACAATTGATT
* * **
77318093 ATTTATGTAAGAATTGACATGTATACACAAGTATTTGATTATTAGCTTTAAGAACCCAATAACTC
1 ATTTATGTAAGAATTGACATGTATACACAAGAAATAAATTATTAGCTTTAAGAACCCAATAACTC
* * * * * **
77318158 TAAAGGTGCAGTTGTATTTCAATGTTCTTTTAGTGA-TGCACATTCAGGGAACTTTATTGCTCGA
66 TAAAGGTGCAGTTGGATTTCAATGTTCCTCTAAT-ACTACACATTCAGACAACTTTATTGCTCGA
* * * *
77318222 TCATGTTGCT-AAAGCTATTTGGCTTGCAAGCTTTAATGTATTCACACTCCTATTTATCACACT-
130 TCATGTTGCTCAAA-CTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTATCACACTA
* * * *
77318285 GAATTTACTTTTTTTTAGTTGGTATTTTTTTTTCTTCTGTAAGGTTTCATCAACGACAATTGATT
194 G-ATTTACTTTCTTTTAGTTGGT-TTATTTTTTCTTCCGTAAGGTTTCACCAACGACAATTGATT
77318350 TGTTTCTACC
Statistics
Matches: 217, Mismatches: 36, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
256 3 0.01
257 91 0.42
258 122 0.56
259 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (256 bp):
ATTTATGTAAGAATTGACATGTATACACAAGAAATAAATTATTAGCTTTAAGAACCCAATAACTC
TAAAGGTGCAGTTGGATTTCAATGTTCCTCTAATACTACACATTCAGACAACTTTATTGCTCGAT
CATGTTGCTCAAACTATTTGGATTGCAAGCTTTAATGAAGTCAAACTCCTATTTATCACACTAGA
TTTACTTTCTTTTAGTTGGTTTATTTTTTCTTCCGTAAGGTTTCACCAACGACAATTGATT
Found at i:77318675 original size:43 final size:43
Alignment explanation
Indices: 77318613--77318694 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
77318603 TGTGACAAAC
* *
77318613 ATATTGTCATATATGTAATGTCATGTCATCTTATTATTTTCAT
1 ATATTATCATATATATAATGTCATGTCATCTTATTATTTTCAT
* * * *
77318656 ATATTATCATATGTATAATGTCGTGTTATCTTGTTATTT
1 ATATTATCATATATATAATGTCATGTCATCTTATTATTT
77318695 CCACATAGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.11, T:0.52
Consensus pattern (43 bp):
ATATTATCATATATATAATGTCATGTCATCTTATTATTTTCAT
Found at i:77326716 original size:9 final size:9
Alignment explanation
Indices: 77326699--77326752 Score: 63
Period size: 9 Copynumber: 5.7 Consensus size: 9
77326689 AATGTGTATG
*
77326699 TATTATATA
1 TATTTTATA
77326708 TATTTTATA
1 TATTTTATA
*
77326717 CATTTTATA
1 TATTTTATA
77326726 TATATTATATA
1 TAT-TT-TATA
77326737 TATTTTATTA
1 TATTTTA-TA
77326747 TATTTT
1 TATTTT
77326753 TATGTATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
9 20 0.51
10 12 0.31
11 7 0.18
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTATA
Found at i:77326726 original size:20 final size:20
Alignment explanation
Indices: 77326701--77326752 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
77326691 TGTGTATGTA
77326701 TTATATATATTTTATACATT
1 TTATATATATTTTATACATT
* *
77326721 TTATATATATTATATATATT
1 TTATATATATTTTATACATT
77326741 TTAT-TATATTTT
1 TTATATATATTTT
77326753 TATGTATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 7 0.24
20 22 0.76
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTATATATATTTTATACATT
Found at i:77326760 original size:12 final size:12
Alignment explanation
Indices: 77326699--77326797 Score: 79
Period size: 11 Copynumber: 8.7 Consensus size: 12
77326689 AATGTGTATG
*
77326699 TATTATATATAT
1 TATTATATATTT
*
77326711 T-TTATACATTT
1 TATTATATATTT
77326722 TA-TATATA--T
1 TATTATATATTT
77326731 TA-TATATATTT
1 TATTATATATTT
77326742 TATTATAT-TTT
1 TATTATATATTT
77326753 TATGTATATATTT
1 TAT-TATATATTT
* *
77326766 T-TAATATCATAT
1 TATTATAT-ATTT
77326778 TATTCATATATTT
1 TATT-ATATATTT
77326791 T-TTATAT
1 TATTATAT
77326798 TATGTAAATA
Statistics
Matches: 71, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
9 9 0.13
11 31 0.44
12 18 0.25
13 9 0.13
14 4 0.06
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (12 bp):
TATTATATATTT
Found at i:77326777 original size:14 final size:14
Alignment explanation
Indices: 77326726--77326797 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
77326716 ACATTTTATA
*
77326726 TATATTATATATATT
1 TATA-TATATATTTT
77326741 T-TAT-TATATTTT
1 TATATATATATTTT
*
77326753 TATGTATATATTTT
1 TATATATATATTTT
*
77326767 TA-ATATCATATTAT
1 TATATAT-ATATTTT
*
77326781 T-CATATAT-TTTT
1 TATATATATATTTT
77326793 TATAT
1 TATAT
77326798 TATGTAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
12 12 0.26
13 10 0.22
14 23 0.50
15 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (14 bp):
TATATATATATTTT
Found at i:77326780 original size:25 final size:25
Alignment explanation
Indices: 77326752--77326837 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
77326742 TATTATATTT
77326752 TTATGTATATATTTTTAATATCATA
1 TTATGTATATATTTTTAATATCATA
77326777 TTAT-TCATATA-TTTT--T-T-ATA
1 TTATGT-ATATATTTTTAATATCATA
* * *
77326797 TTATGTAAATATTTTCAATA-CTACA
1 TTATGTATATATTTTTAATATC-ATA
77326822 TTATGTATATATTTTT
1 TTATGTATATATTTTT
77326838 GTCTATAATG
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
20 11 0.23
21 5 0.10
22 1 0.02
23 1 0.02
24 5 0.10
25 25 0.52
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (25 bp):
TTATGTATATATTTTTAATATCATA
Found at i:77327332 original size:15 final size:16
Alignment explanation
Indices: 77327295--77327335 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
77327285 ATACCATGTG
*
77327295 TTATTATCATTTCATA
1 TTATTATTATTTCATA
*
77327311 CTATTATTATTT-ATA
1 TTATTATTATTTCATA
77327326 TTATTATTAT
1 TTATTATTAT
77327336 CGTTTTCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTATTATTTCATA
Found at i:77339474 original size:204 final size:205
Alignment explanation
Indices: 77339199--77339700 Score: 713
Period size: 204 Copynumber: 2.5 Consensus size: 205
77339189 CGGGGAGCAG
* * * * * * *
77339199 ATCGAAGATATAGCTGATTTGG-TTTCACGTATTTACGATGAAGCAAATCCAATATGATTTGTCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGACA
* * * * *
77339263 CCTCTGTAGTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGCAGATACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGACATCTCCACTTCAATAGAGAGCAGACACATA
* * *
77339328 GCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTT
131 GCAGATC-CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTT
*
77339392 ATAAGGAACAA
195 ACAAGGAACAA
* *
77339403 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGAT-ATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGACA
* * * * *
77339467 TCTCTGTATTGTCAGAGAACAAATCGAAATCTGACATCTCCACTTCGATTGAGGGTAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGACATCTCCACTTCAATAGAGAGCAGACACATA
77339532 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
*
77339597 CAAGGAGCAA
196 CAAGGAACAA
* * * * *
77339607 ATCGAAGACGTAGCTGATTTGGCTTTCACGTTCTTAAGTTAAAGCAAATCTAAGATGATTTGATA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGACA
77339672 TCTCTGTATTGTCAGAGAACAAATCGAAG
66 TCTCTGTATTGTCAGAGAACAAATCGAAG
77339701 AAGCAGATTT
Statistics
Matches: 265, Mismatches: 30, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
203 1 0.00
204 202 0.76
205 62 0.23
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGACA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGACATCTCCACTTCAATAGAGAGCAGACACATA
GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
CAAGGAACAA
Found at i:77339847 original size:45 final size:45
Alignment explanation
Indices: 77339794--77339879 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
77339784 GAAGAAGCAA
* *
77339794 ATTTGGCGTCTTTGTATTAGACGGGGAGCAGATCGAAGATAACAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
77339839 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
77339880 GTAGATATCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (45 bp):
ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
Found at i:77341629 original size:9 final size:9
Alignment explanation
Indices: 77341612--77341664 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
77341602 AACGTGTATG
*
77341612 TATTATATA
1 TATTTTATA
77341621 TATTTTATA
1 TATTTTATA
*
77341630 CATTTTATA
1 TATTTTATA
*
77341639 TATTATATA
1 TATTTTATA
77341648 TATTTTTATTA
1 TA-TTTTA-TA
77341659 TATTTT
1 TATTTT
77341665 TATGTATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
9 25 0.68
10 8 0.22
11 4 0.11
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (9 bp):
TATTTTATA
Found at i:77341672 original size:27 final size:27
Alignment explanation
Indices: 77341608--77341708 Score: 77
Period size: 29 Copynumber: 3.7 Consensus size: 27
77341598 TTCTAACGTG
77341608 TATGTATTATATATATTTTATACATTTTA
1 TATGTA-TATATAT-TTTTATACATTTTA
* *
77341637 TATATTATATATATTTTTATTATATTTT-
1 TAT-GTATATATATTTTTA-TACATTTTA
* *
77341665 TATGTATATAT-TTTTAATATCATATTA
1 TATGTATATATATTTTTATA-CATTTTA
*
77341692 T-T-CATATAT-TTTTTATA
1 TATGTATATATATTTTTATA
77341709 TTATGTAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 15 0.25
26 10 0.17
27 8 0.13
28 8 0.13
29 17 0.28
30 2 0.03
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (27 bp):
TATGTATATATATTTTTATACATTTTA
Found at i:77341692 original size:25 final size:24
Alignment explanation
Indices: 77341635--77341749 Score: 100
Period size: 25 Copynumber: 4.9 Consensus size: 24
77341625 TTATACATTT
*
77341635 TATATATTA--TATATATTTTTAT
1 TATATATTATGTATATATTTTTAA
*
77341657 TATATTTTTATGTATATATTTTTAA
1 TATA-TATTATGTATATATTTTTAA
77341682 TATCATATTAT-TCATATA-TTTT--
1 TAT-ATATTATGT-ATATATTTTTAA
* *
77341704 T-TATATTATGTAAATATTTTCAA
1 TATATATTATGTATATATTTTTAA
*
77341727 TACTACATTATGTATATATTTTT
1 TA-TATATTATGTATATATTTTT
77341750 GTCCATATTG
Statistics
Matches: 74, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
20 11 0.15
21 5 0.07
22 5 0.07
23 5 0.07
24 5 0.07
25 42 0.57
26 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (24 bp):
TATATATTATGTATATATTTTTAA
Found at i:77341709 original size:11 final size:11
Alignment explanation
Indices: 77341614--77341709 Score: 56
Period size: 11 Copynumber: 8.5 Consensus size: 11
77341604 CGTGTATGTA
*
77341614 TTATATATATT
1 TTATATATTTT
*
77341625 TTATACA--TT
1 TTATATATTTT
*
77341634 TTATATATTAT
1 TTATATATTTT
*
77341645 ATATAT-TTTT
1 TTATATATTTT
77341655 ATTATAT-TTTT
1 -TTATATATTTT
77341666 ATGTATATATTTT
1 -T-TATATATTTT
*
77341679 TAATATCATATTAT
1 T--TAT-ATATTTT
*
77341693 TCATATATTTT
1 TTATATATTTT
77341704 TTATAT
1 TTATAT
77341710 TATGTAAATA
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
9 8 0.12
10 3 0.04
11 34 0.51
12 8 0.12
13 7 0.10
14 7 0.10
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (11 bp):
TTATATATTTT
Found at i:77341723 original size:45 final size:45
Alignment explanation
Indices: 77341664--77341749 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
77341654 TATTATATTT
* * *
77341664 TTATGTATATATTTTTAATA-TCATATTAT-TCATATATTTTTTATA
1 TTATGTAAATATTTTCAATACT-ACATTATGT-ATATATTTTTTATA
77341709 TTATGTAAATATTTTCAATACTACATTATGTATATATTTTT
1 TTATGTAAATATTTTCAATACTACATTATGTATATATTTTT
77341750 GTCCATATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 34 0.94
46 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (45 bp):
TTATGTAAATATTTTCAATACTACATTATGTATATATTTTTTATA
Found at i:77342025 original size:26 final size:26
Alignment explanation
Indices: 77341995--77342046 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
77341985 ATTATGTATA
*
77341995 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
77342021 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
77342047 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:77343013 original size:8 final size:8
Alignment explanation
Indices: 77343002--77343026 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
77342992 TTCAAATTTT
77343002 AGACACTA
1 AGACACTA
77343010 AGACACTA
1 AGACACTA
77343018 AGACACTA
1 AGACACTA
77343026 A
1 A
77343027 TTAATCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.12, T:0.12
Consensus pattern (8 bp):
AGACACTA
Found at i:77343722 original size:29 final size:30
Alignment explanation
Indices: 77343663--77343722 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
77343653 CTATATATAT
* * **
77343663 TTAGTTTAAGATTTAATTAAGTTAATTTAA
1 TTAGTTTAAGACTTAATTAAATTAAACTAA
77343693 TTAGTTTAAG-CTTAATTAAATTAAACTAA
1 TTAGTTTAAGACTTAATTAAATTAAACTAA
77343722 T
1 T
77343723 CATACGTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (30 bp):
TTAGTTTAAGACTTAATTAAATTAAACTAA
Found at i:77350913 original size:20 final size:21
Alignment explanation
Indices: 77350882--77350920 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
77350872 AAAGATAATT
*
77350882 TTTTTTATTTTTCTTAAAAAC
1 TTTTTTATTTTTCGTAAAAAC
77350903 TTTTTTA-TTTTCGTAAAA
1 TTTTTTATTTTTCGTAAAA
77350921 TACAAGCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTTTATTTTTCGTAAAAAC
Found at i:77351137 original size:18 final size:18
Alignment explanation
Indices: 77351056--77351139 Score: 53
Period size: 18 Copynumber: 4.6 Consensus size: 18
77351046 AATTTGAATT
* *
77351056 TAATTTAAATGATAAAAAA
1 TAATTTTAAT-ATTAAAAA
* * **
77351075 TATTTTTAAAATTAAATT
1 TAATTTTAATATTAAAAA
* * *
77351093 TAATTATAAAATTATATAA
1 TAATTTTAATATTA-AAAA
*
77351112 -AATATTAATATTAAAAA
1 TAATTTTAATATTAAAAA
77351129 TAATTTTAATA
1 TAATTTTAATA
77351140 AATTTATTAA
Statistics
Matches: 47, Mismatches: 16, Indels: 5
0.69 0.24 0.07
Matches are distributed among these distances:
17 3 0.06
18 36 0.77
19 8 0.17
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (18 bp):
TAATTTTAATATTAAAAA
Found at i:77354464 original size:88 final size:87
Alignment explanation
Indices: 77354359--77354535 Score: 300
Period size: 88 Copynumber: 2.0 Consensus size: 87
77354349 AGTTTTTTTC
* *
77354359 TTTTTATACAATAAAGTACTTAAATCTGATTTAATAGTTTAAATTGATTCAAATAAATCATTTAC
1 TTTTTATACAATAAAGTACCTAAATCTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
77354424 GGTAAGTGACCAAAAAACTTAAT
66 GGTAAGTGA-CAAAAAACTTAAT
* *
77354447 TTTTTATACAATTAAGTACCTAAATTTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
1 TTTTTATACAATAAAGTACCTAAATCTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
*
77354512 GGTAAGTGATAAAAAACTTAAT
66 GGTAAGTGACAAAAAACTTAAT
77354534 TT
1 TT
77354536 AGATACCAAT
Statistics
Matches: 84, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 14 0.17
88 70 0.83
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (87 bp):
TTTTTATACAATAAAGTACCTAAATCTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTAC
GGTAAGTGACAAAAAACTTAAT
Found at i:77354560 original size:88 final size:88
Alignment explanation
Indices: 77354380--77354560 Score: 242
Period size: 88 Copynumber: 2.1 Consensus size: 88
77354370 TAAAGTACTT
* *
77354380 AAATCTGATTTAATAGTTTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTA
1 AAATTTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTA
** * **
77354445 ATTTTTTATACAATTAAGTACCT
66 ATTTTAGATACAATTAACTACAA
*
77354468 AAATTTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTACGGTAAGTGA-TAAAAAACTTA
1 AAATTTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTA
77354532 A-TTTAGATACCAATTTGAACTA-AA
66 ATTTTAGATA-CAA-TT-AACTACAA
77354556 AAATT
1 AAATT
77354561 AAATTCAAAT
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
86 6 0.07
87 14 0.17
88 58 0.71
89 4 0.05
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (88 bp):
AAATTTGATTTAAAAGTTTAAATTGATTCAAATAAATCATTTACGGTAAGTGACCAAAAAACTTA
ATTTTAGATACAATTAACTACAA
Found at i:77359635 original size:11 final size:11
Alignment explanation
Indices: 77359619--77359648 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
77359609 AGTAAAATTA
77359619 CTTTAGAATCC
1 CTTTAGAATCC
77359630 CTTTAGAATCC
1 CTTTAGAATCC
77359641 CTTTAGAA
1 CTTTAGAA
77359649 ATTTTAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (11 bp):
CTTTAGAATCC
Found at i:77365618 original size:30 final size:30
Alignment explanation
Indices: 77365584--77365643 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
77365574 TATTTTATTA
77365584 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
77365614 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
77365644 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:77367927 original size:62 final size:57
Alignment explanation
Indices: 77367848--77368004 Score: 163
Period size: 62 Copynumber: 2.6 Consensus size: 57
77367838 GGTGTTAAGA
* * *
77367848 TTTGGGGTTTAATTAAAATTTTCAAAAAATTTAAAGGGCTAATGAGA-ATTGACAAAAAT
1 TTTGGGGTATAATTAAAATTTT-TAAAAATTTAAAGGGCTAATAAGATATT--CAAAAAT
* ** *
77367907 TTTGGAAGGATCTAATTAAAAATTTTTAAAAATTTGAAAGGTTTAATAAGATATTCTAAAAT
1 TTTGG--GG-TATAATT-AAAATTTTTAAAAATTT-AAAGGGCTAATAAGATATTCAAAAAT
*
77367969 TTTGGGGTATAATTAAAATTTTTAAAATTTTAAAGG
1 TTTGGGGTATAATTAAAATTTTTAAAAATTTAAAGG
77368005 TTAAAAAGAA
Statistics
Matches: 84, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
57 5 0.06
58 16 0.19
59 11 0.13
60 2 0.02
61 2 0.02
62 25 0.30
63 20 0.24
64 3 0.04
ACGTcount: A:0.43, C:0.03, G:0.15, T:0.38
Consensus pattern (57 bp):
TTTGGGGTATAATTAAAATTTTTAAAAATTTAAAGGGCTAATAAGATATTCAAAAAT
Found at i:77367994 original size:28 final size:29
Alignment explanation
Indices: 77367902--77368005 Score: 86
Period size: 28 Copynumber: 3.5 Consensus size: 29
77367892 AGAATTGACA
*
77367902 AAAATTTTGGAAGGATCTAATTAAAAATTTTT
1 AAAATTTT-GAAGG-TATAATT-AAAATTTTT
* * * *
77367934 AAAAATTTGAAAGGTTTAA-TAAGATATTCT
1 AAAATTTTG-AAGGTATAATTAAAAT-TTTT
*
77367964 AAAATTTTG-GGGTATAATTAAAATTTTT
1 AAAATTTTGAAGGTATAATTAAAATTTTT
*
77367992 AAAATTTTAAAGGT
1 AAAATTTTGAAGGT
77368006 TAAAAAGAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
28 17 0.30
29 12 0.21
30 12 0.21
31 5 0.09
32 11 0.19
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.40
Consensus pattern (29 bp):
AAAATTTTGAAGGTATAATTAAAATTTTT
Found at i:77374021 original size:42 final size:42
Alignment explanation
Indices: 77373911--77373991 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
77373901 TCCTAAATAG
* *** *
77373911 AAACCCATAAGGGTTGAGCGGAAGCTCATAAGAGCTGAACAA
1 AAACCCATAAGGGTTAAAAAGAAGCTCAAAAGAGCTGAACAA
77373953 AAACCCATAAGGGTTAAAAAGAAGCTCAAAAGAGCTGAA
1 AAACCCATAAGGGTTAAAAAGAAGCTCAAAAGAGCTGAA
77373992 TGGAAACTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAAAAGAAGCTCAAAAGAGCTGAACAA
Found at i:77375944 original size:20 final size:20
Alignment explanation
Indices: 77375911--77375951 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
77375901 TAAATATTTC
** *
77375911 TTTTATTACCATTTTATATA
1 TTTTATTAAAATTTTAAATA
77375931 TTTTATTAAAATTTTAAATA
1 TTTTATTAAAATTTTAAATA
77375951 T
1 T
77375952 AAAAAGCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTATTAAAATTTTAAATA
Found at i:77381071 original size:42 final size:40
Alignment explanation
Indices: 77381019--77381102 Score: 107
Period size: 39 Copynumber: 2.0 Consensus size: 40
77381009 GAAAAAAAGG
77381019 TTCATTTTTACCAATTTCAAAAAAAAAAAACCAGCTCCCTTTT
1 TTCATTTTTACCAATTT---AAAAAAAAAACCAGCTCCCTTTT
* * *
77381062 TTCA-TTTTACCCATTTAAAAAAAAATCTAGCTCCCTTTT
1 TTCATTTTTACCAATTTAAAAAAAAAACCAGCTCCCTTTT
77381101 TT
1 TT
77381103 TTTCTCTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 23 0.61
42 11 0.29
43 4 0.11
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (40 bp):
TTCATTTTTACCAATTTAAAAAAAAAACCAGCTCCCTTTT
Found at i:77381463 original size:17 final size:17
Alignment explanation
Indices: 77381441--77381475 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
77381431 TTTTGTGTTC
77381441 TGTTTTTTATT-TTTTTG
1 TGTTTTTT-TTATTTTTG
77381458 TGTTTTTTTTATTTTTG
1 TGTTTTTTTTATTTTTG
77381475 T
1 T
77381476 TTCAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.06, C:0.00, G:0.11, T:0.83
Consensus pattern (17 bp):
TGTTTTTTTTATTTTTG
Found at i:77382099 original size:44 final size:44
Alignment explanation
Indices: 77382051--77382243 Score: 235
Period size: 44 Copynumber: 4.4 Consensus size: 44
77382041 TTGTTACTCC
* *
77382051 AATCTACTCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATGAGACTTGTAACTTT
* * * *
77382095 AATCTGCTCCACTGTAACTTCAGGGAGATGAGACTCGTATA-TTC
1 AATCTACTCCACTGCAACTTCAGGGAGATGAGACTTGTA-ACTTT
* * *
77382139 AATCTACTCTACTACAACTTCAGGGAGATGAGATTTGTAACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATGAGACTTGTAACTTT
* * ** * *
77382183 AATCTACTCCACTGCAATTTTAAAGAGATAAGATTTGTAACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATGAGACTTGTAACTTT
77382227 AATCTACTCCACTGCAA
1 AATCTACTCCACTGCAA
77382244 AAGAGATAAG
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.01
44 126 0.99
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (44 bp):
AATCTACTCCACTGCAACTTCAGGGAGATGAGACTTGTAACTTT
Found at i:77382247 original size:39 final size:39
Alignment explanation
Indices: 77382163--77382282 Score: 143
Period size: 39 Copynumber: 2.9 Consensus size: 39
77382153 CAACTTCAGG
*
77382163 GAGATGAGATTTGTAACTTTAATCTACTCCACTGCAATTTTAAA
1 GAGATAAGATTTGTAACTTTAATCTACTCCACTGC-A----AAA
77382207 GAGATAAGATTTGTAACTTTAATCTACTCCACTGCAAAA
1 GAGATAAGATTTGTAACTTTAATCTACTCCACTGCAAAA
* * *
77382246 GAGATAAGATTTGT-AGTGTTAATCTGCTCTACTGCAA
1 GAGATAAGATTTGTAACT-TTAATCTACTCCACTGCAA
77382283 CTTCAGAGAG
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
38 2 0.03
39 34 0.48
43 1 0.01
44 34 0.48
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (39 bp):
GAGATAAGATTTGTAACTTTAATCTACTCCACTGCAAAA
Found at i:77382577 original size:45 final size:44
Alignment explanation
Indices: 77382502--77382641 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 44
77382492 AAGACTTGTA
* * * *
77382502 ATTTGTAGTTTTAATCTGTTCCACTACAACTTTCAAAGAAATAGG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAAC-TTCAAAGAAATAAG
* * * *
77382547 ATTTGTAGCTTTAATCTGCTCTATTGCAACTTCAGAGAGATAAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAAGAAATAAG
* * *
77382591 ATTTGCTATCTTCAATTTGCTCCACTGCAACTTCAAA-AAGATAAG
1 ATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAAAGAA-ATAAG
77382636 ATTTGT
1 ATTTGT
77382642 GATAAGATTT
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
44 18 0.23
45 60 0.77
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (44 bp):
ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAAGAAATAAG
Found at i:77382647 original size:12 final size:12
Alignment explanation
Indices: 77382630--77382655 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77382620 ACTTCAAAAA
77382630 GATAAGATTTGT
1 GATAAGATTTGT
77382642 GATAAGATTTGT
1 GATAAGATTTGT
77382654 GA
1 GA
77382656 CTTCAATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (12 bp):
GATAAGATTTGT
Found at i:77403799 original size:18 final size:18
Alignment explanation
Indices: 77403768--77403812 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
77403758 GTTATTCATT
77403768 TATTCAGTAACAATCAAA
1 TATTCAGTAACAATCAAA
* * *
77403786 TATTCGGTAGCAATCAAT
1 TATTCAGTAACAATCAAA
*
77403804 TTTTCAGTA
1 TATTCAGTA
77403813 CTTTTACTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (18 bp):
TATTCAGTAACAATCAAA
Found at i:77403978 original size:6 final size:6
Alignment explanation
Indices: 77403922--77403976 Score: 92
Period size: 6 Copynumber: 9.2 Consensus size: 6
77403912 GAATATACCA
*
77403922 TAACGG TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG
1 TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG TAACAG
*
77403970 TCACAG T
1 TAACAG T
77403977 CAGGTACAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
TAACAG
Found at i:77407595 original size:12 final size:12
Alignment explanation
Indices: 77407580--77407605 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77407570 AAAATAGAGT
77407580 AAAAAAATCTAA
1 AAAAAAATCTAA
77407592 AAAAAAATCTAA
1 AAAAAAATCTAA
77407604 AA
1 AA
77407606 GCCATTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAATCTAA
Found at i:77408636 original size:14 final size:14
Alignment explanation
Indices: 77408617--77408646 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77408607 AGCTTTTAAT
*
77408617 CTGCTCTACTGCAA
1 CTGCTCCACTGCAA
77408631 CTGCTCCACTGCAA
1 CTGCTCCACTGCAA
77408645 CT
1 CT
77408647 TTAGGGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.13, T:0.27
Consensus pattern (14 bp):
CTGCTCCACTGCAA
Found at i:77408931 original size:88 final size:88
Alignment explanation
Indices: 77408823--77408988 Score: 242
Period size: 88 Copynumber: 1.9 Consensus size: 88
77408813 GTAATTTTCA
* * * * *
77408823 GCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTGCTCCACTACTGCTTAG
1 GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTCTTCGATTCGCTCCACTAATGCTTAG
*
77408888 GGAGACAAGATCTACAATCTTCG
66 GAAGACAAGATCTACAATCTTCG
** *
77408911 GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCATTGTCTTCGATTCGCTTCACTAATGCTTAG
1 GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTCTTCGATTCGCTCCACTAATGCTTAG
*
77408976 GAAGATAAGATCT
66 GAAGACAAGATCT
77408989 GTGAATTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 68 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (88 bp):
GCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTCTTCGATTCGCTCCACTAATGCTTAG
GAAGACAAGATCTACAATCTTCG
Found at i:77409820 original size:11 final size:10
Alignment explanation
Indices: 77409800--77409829 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
77409790 TCATCTTAGC
*
77409800 TTTTCCTTTT
1 TTTTTCTTTT
77409810 TTTTTCTTTT
1 TTTTTCTTTT
77409820 TTTTTCTTTT
1 TTTTTCTTTT
77409830 GGTTTCAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:77416811 original size:60 final size:58
Alignment explanation
Indices: 77416685--77416833 Score: 156
Period size: 60 Copynumber: 2.5 Consensus size: 58
77416675 GAAGTATAAG
* * *
77416685 TAATATCAAATTTAAATATTTAAAAATAAAAGAATAATAAATATATAAATAGGCAAAAAA
1 TAATATTAAATTTAAGTATTTAAAAATAAAAGAATAATAAATAAATAAATA-G-AAAAAA
* * * *
77416745 TAATATTGAATTTGAGTATTTAAAATGTAAAAGAATAAATAAATAAATAAATA-AAATAAG
1 TAATATTAAATTTAAGTATTTAAAA-ATAAAAGAAT-AATAAATAAATAAATAGAAA-AAA
* *
77416805 TGATATTAAATTTAAGTATATAAGAAATA
1 TAATATTAAATTTAAGTATTTAA-AAATA
77416834 TACTTAAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
59 3 0.04
60 44 0.60
61 11 0.15
62 15 0.21
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (58 bp):
TAATATTAAATTTAAGTATTTAAAAATAAAAGAATAATAAATAAATAAATAGAAAAAA
Found at i:77418945 original size:29 final size:28
Alignment explanation
Indices: 77418907--77418961 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
77418897 AAGTTTAATA
* *
77418907 TTTTTTTCTAATATGGTACTTGTATTAT
1 TTTTTTTCTAATATGATACATGTATTAT
*
77418935 TTTTTTGTCTAATCTGATACATGTATT
1 TTTTTT-TCTAATATGATACATGTATT
77418962 TAACAAAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.26
29 17 0.74
ACGTcount: A:0.22, C:0.09, G:0.11, T:0.58
Consensus pattern (28 bp):
TTTTTTTCTAATATGATACATGTATTAT
Found at i:77424085 original size:22 final size:20
Alignment explanation
Indices: 77424060--77424114 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 20
77424050 GTGATGTATT
77424060 TTTTTAAATTTGAAATTTTTTA
1 TTTTTAAATTT--AATTTTTTA
*
77424082 TTTTTAGAAATTTATTTTTTTA
1 TTTTT--AAATTTAATTTTTTA
77424104 TTTTTAAATTT
1 TTTTTAAATTT
77424115 CAAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 6 0.20
22 18 0.60
24 6 0.20
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTTAAATTTAATTTTTTA
Done.