Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 235 of 320
Found at i:77735345 original size:12 final size:12
Alignment explanation
Indices: 77735330--77735358 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
77735320 AATAAAAAAA
77735330 AATAATATATAT
1 AATAATATATAT
77735342 AATAATATATAT
1 AATAATATATAT
77735354 AATAA
1 AATAA
77735359 ATAAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AATAATATATAT
Found at i:77737227 original size:11 final size:11
Alignment explanation
Indices: 77737211--77737235 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77737201 TGTTTAAAGG
77737211 AATATATTTAT
1 AATATATTTAT
77737222 AATATATTTAT
1 AATATATTTAT
77737233 AAT
1 AAT
77737236 TTACTTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
AATATATTTAT
Found at i:77742049 original size:22 final size:21
Alignment explanation
Indices: 77742024--77742068 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
77742014 ACACCAAAAC
* *
77742024 AGGCTTTTAACGGCGCTTTTTT
1 AGGCCTTTAACGGC-ATTTTTT
*
77742046 AGGCCTTTAGCGGCATTTTTT
1 AGGCCTTTAACGGCATTTTTT
77742067 AG
1 AG
77742069 CGCCACTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (21 bp):
AGGCCTTTAACGGCATTTTTT
Found at i:77742314 original size:83 final size:83
Alignment explanation
Indices: 77742168--77742321 Score: 238
Period size: 83 Copynumber: 1.8 Consensus size: 83
77742158 ATAAACGCCG
* * * *
77742168 CTAAAGACTAAGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTAAAGACCATGACCTTTAGCG
1 CTAAAGACCAAGACCTTTAGCGGCG-TCTTCCCACAAACGCCGCTAAAAACCAAGACCTTTAGCG
77742233 GCGCTTCCCCAAAAAGCCA
65 GCGCTTCCCCAAAAAGCCA
*
77742252 CTAAAGACCAAGACCTTTAGCGGCG-CTTCCTCGCAAACGCCGCTAAAAACCAAGACCTTTAGCG
1 CTAAAGACCAAGACCTTTAGCGGCGTCTTCC-CACAAACGCCGCTAAAAACCAAGACCTTTAGCG
77742316 GCGCTT
65 GCGCTT
77742322 TTCCCACAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
82 4 0.06
83 36 0.56
84 24 0.38
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.19
Consensus pattern (83 bp):
CTAAAGACCAAGACCTTTAGCGGCGTCTTCCCACAAACGCCGCTAAAAACCAAGACCTTTAGCGG
CGCTTCCCCAAAAAGCCA
Found at i:77742354 original size:42 final size:42
Alignment explanation
Indices: 77742160--77742425 Score: 267
Period size: 43 Copynumber: 6.3 Consensus size: 42
77742150 TTTTATAAAT
* *
77742160 AAACGCCGCTAAAGACTAAGACCTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCT-AAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
77742203 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTCCCCA-
1 AAACGCCGCT-AAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
77742244 AAAAGCCACTAAAGACCAAGACCTTTAGCGGCGC--TTCCTCGC
1 AAACGCCGCT-AAGACCAAGACCTTTAGCGGCGCTTTTCC-CAC
*
77742286 AAACGCCGCTAAAAACCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCT-AAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
77742329 AAACGCCGCTAAGA-TATTGAGCTTTAGCGGCGCTTTTTCCCAC
1 AAACGCCGCTAAGACCA-AGACCTTTAGCGGCGC-TTTTCCCAC
* **
77742372 AAATGCCGCTATAGA--ATAGACCTTTAGCGGCGCTTTTAACAC
1 AAACGCCGCTA-AGACCA-AGACCTTTAGCGGCGCTTTTCCCAC
*
77742414 AAACGCCACTAA
1 AAACGCCGCTAA
77742426 AAATATATCT
Statistics
Matches: 192, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
40 3 0.02
41 34 0.18
42 70 0.36
43 78 0.41
44 7 0.04
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.21
Consensus pattern (42 bp):
AAACGCCGCTAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:77742766 original size:43 final size:43
Alignment explanation
Indices: 77742700--77742790 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
77742690 ACATATGCAA
* * * *
77742700 GGTAATAAAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
77742743 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
77742786 -GTAAT
1 GGTAAT
77742791 GAACTCAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 5 0.12
43 38 0.88
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:77747198 original size:7 final size:7
Alignment explanation
Indices: 77747188--77747253 Score: 69
Period size: 7 Copynumber: 9.4 Consensus size: 7
77747178 CACTAACTCT
*
77747188 TAACCTC
1 TAACCCC
*
77747195 TAACCTC
1 TAACCCC
**
77747202 TAACCTT
1 TAACCCC
77747209 TAACCCC
1 TAACCCC
77747216 TAACCCC
1 TAACCCC
77747223 TAACCCC
1 TAACCCC
*
77747230 TAACCCA
1 TAACCCC
**
77747237 TAACTAC
1 TAACCCC
77747244 TAACCCC
1 TAACCCC
77747251 TAA
1 TAA
77747254 ATCTTATTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.23
Consensus pattern (7 bp):
TAACCCC
Found at i:77747233 original size:21 final size:21
Alignment explanation
Indices: 77747178--77747253 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
77747168 AACCCTAAAT
* * *
77747178 CACTAACTCTTAACCTCTAAC
1 CACTAACCCCTAACCCCTAAC
* **
77747199 CTCTAACCTTTAACCCCTAAC
1 CACTAACCCCTAACCCCTAAC
* *
77747220 CCCTAACCCCTAACCCATAAC
1 CACTAACCCCTAACCCCTAAC
*
77747241 TACTAACCCCTAA
1 CACTAACCCCTAA
77747254 ATCTTATTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.33, C:0.43, G:0.00, T:0.24
Consensus pattern (21 bp):
CACTAACCCCTAACCCCTAAC
Found at i:77747497 original size:14 final size:15
Alignment explanation
Indices: 77747478--77747510 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
77747468 CTTAAACCAG
77747478 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
77747492 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
77747507 AATC
1 AATC
77747511 TATAAATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:77747595 original size:14 final size:14
Alignment explanation
Indices: 77747559--77747595 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
77747549 ATCCTAAATT
77747559 AACCATATACCCTA
1 AACCATATACCCTA
*
77747573 AATCATATACCCTA
1 AACCATATACCCTA
*
77747587 AACCGTATA
1 AACCATATA
77747596 TATTAAACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.43, C:0.30, G:0.03, T:0.24
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:77748015 original size:41 final size:41
Alignment explanation
Indices: 77747958--77748160 Score: 300
Period size: 41 Copynumber: 5.0 Consensus size: 41
77747948 TCAAAAGCGG
*
77747958 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCAA
* * *
77747999 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGG-TCAGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCA-A
* **
77748040 GCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCTGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCAA
* *
77748081 GCATTAGCGGCGCTTCTTCCAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCAA
*
77748122 GCATTAGCGGCGCTTCTTCAAAAACGCCACTAAAGGCCC
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
77748161 CAAAAACTCA
Statistics
Matches: 148, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
40 2 0.01
41 146 0.99
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCAA
Found at i:77748330 original size:40 final size:40
Alignment explanation
Indices: 77748215--77748332 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 40
77748205 CACTTTTTTG
* **
77748215 AAAA-CGCCGGTAATGCTTATTTTTAGCGGCGTTTTCCA-
1 AAAAGCGCCGCTAATGCTTATTTTTAGCGGCGTTTTTTAT
* * * ** *
77748253 AAAAGTGCTGCTAATGCTCGACCTTTAGCGGTG-TTTTTAT
1 AAAAGCGCCGCTAATGCT-TATTTTTAGCGGCGTTTTTTAT
*
77748293 AAAAGCGCCGCTAATGCTTATTTTTAGTGGCGTTTTTTAT
1 AAAAGCGCCGCTAATGCTTATTTTTAGCGGCGTTTTTTAT
77748333 CCAAATGCCG
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
38 4 0.07
39 23 0.38
40 33 0.55
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTTATTTTTAGCGGCGTTTTTTAT
Found at i:77748728 original size:21 final size:21
Alignment explanation
Indices: 77748704--77748755 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
77748694 AACTGAGTTA
77748704 GACAAAAAGAGAAGCAACTTG
1 GACAAAAAGAGAAGCAACTTG
* *
77748725 GACAAAAAGAGAAGTAATTTG
1 GACAAAAAGAGAAGCAACTTG
77748746 GACAAAAAGA
1 GACAAAAAGA
77748756 AACGAAGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.56, C:0.10, G:0.23, T:0.12
Consensus pattern (21 bp):
GACAAAAAGAGAAGCAACTTG
Found at i:77752133 original size:28 final size:28
Alignment explanation
Indices: 77752091--77752146 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
77752081 TACAGTAAGT
77752091 TAGGACACGACATCTCAAACTTTTGAGA
1 TAGGACACGACATCTCAAACTTTTGAGA
* *
77752119 TAGGACACGATATCTCGAACTTTTGAGA
1 TAGGACACGACATCTCAAACTTTTGAGA
77752147 ATGAGCTTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (28 bp):
TAGGACACGACATCTCAAACTTTTGAGA
Found at i:77752954 original size:23 final size:24
Alignment explanation
Indices: 77752928--77752975 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
77752918 AATAATACTA
*
77752928 TAGTAATAATGAT-AATAAAAAAT
1 TAGTAATAATAATAAATAAAAAAT
77752951 TAGTAATAATAATAAAATAAAAAAT
1 TAGTAATAATAAT-AAATAAAAAAT
77752976 ATAATGGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.55
25 10 0.45
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (24 bp):
TAGTAATAATAATAAATAAAAAAT
Found at i:77752980 original size:23 final size:22
Alignment explanation
Indices: 77752902--77752980 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 22
77752892 TATGTAGATG
*
77752902 AAAATATAATAGTAAT-AAT-A
1 AAAATATAATAATAATAAATAA
* * *
77752922 ATACTATAGTAATAATGATAATAA
1 AAAATATAATAATAAT-A-AATAA
77752946 AAAATTAGTAATAATAATAAAATAA
1 AAAA-TA-TAATAATAAT-AAATAA
77752971 AAAATATAAT
1 AAAATATAAT
77752981 GGTGACCGTA
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
20 12 0.27
23 7 0.16
24 5 0.11
25 11 0.24
26 10 0.22
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.30
Consensus pattern (22 bp):
AAAATATAATAATAATAAATAA
Found at i:77753017 original size:3 final size:3
Alignment explanation
Indices: 77753009--77753294 Score: 88
Period size: 3 Copynumber: 92.3 Consensus size: 3
77752999 ATGTTAATTG
* * * * **
77753009 TAA TAA TAA TAA TAA TAA TAA -AA GGAA TAA AAA CAA TAG TAA CGA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
* * * * *
77753054 TAA GAG TAT TAA TAA TAA CAA TAA T-A TAAA TAA TAA TATA TACGT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA--A TAA
* * * **
77753102 TAA T-A TAC TAA TAA GAA TAA TAA TAGGT TAA TAA TAA TAGGA GGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TA--A TAA TAA
*
77753149 TACA TGAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAAA GAA TAGGA
1 TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA--A
* * *
77753195 -AA TAA TAA T-A TAC TAA TAA GAA TAA TAA TAGGT TAA TAA TAA TAGGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TA--A
** * * ** *
77753242 GGA -AA CAA TAA TAA T-A TAT TAA TAA GGA TACA -AA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
77753285 TAA TAA TAA T
1 TAA TAA TAA T
77753295 GGTAAAATAG
Statistics
Matches: 206, Mismatches: 49, Indels: 56
0.66 0.16 0.18
Matches are distributed among these distances:
2 16 0.08
3 166 0.81
4 14 0.07
5 10 0.05
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:77753278 original size:98 final size:99
Alignment explanation
Indices: 77753099--77753284 Score: 290
Period size: 98 Copynumber: 1.9 Consensus size: 99
77753089 ATATATACGT
*
77753099 TAATAATATACTAATAAGAATAATAATAGGTTAATAATAATAGGAGGAAATACATGAATAATAAT
1 TAATAATATACTAATAAGAATAATAATAGGTTAATAATAATAGGAGGAAACACATGAATAATAAT
*
77753164 AATAATAATAATAATAAT-ATAAAGAATAGGAAA
66 AATAAGAATAATAATAATGATAAAGAATAGGAAA
77753197 TAATAATATACTAATAAGAATAATAATAGGTTAATAATAATAGGAGGAAACA-AT-AATAATATA
1 TAATAATATACTAATAAGAATAATAATAGGTTAATAATAATAGGAGGAAACACATGAATAATA-A
*
77753260 TTAATAAGGATACA-AATAATGATAA
65 -TAATAAGAATA-ATAATAATGATAA
77753285 TAATAATAAT
Statistics
Matches: 81, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
96 7 0.09
97 3 0.04
98 66 0.81
99 5 0.06
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.28
Consensus pattern (99 bp):
TAATAATATACTAATAAGAATAATAATAGGTTAATAATAATAGGAGGAAACACATGAATAATAAT
AATAAGAATAATAATAATGATAAAGAATAGGAAA
Found at i:77754690 original size:16 final size:17
Alignment explanation
Indices: 77754651--77754691 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
77754641 ATAATAAAAA
77754651 TATAATTTTATTATTTT
1 TATAATTTTATTATTTT
*
77754668 AAT-ATTTTA-TATTTT
1 TATAATTTTATTATTTT
77754683 TATAATTTT
1 TATAATTTT
77754692 TAAAAGATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 8 0.38
16 11 0.52
17 2 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATAATTTTATTATTTT
Found at i:77754745 original size:31 final size:30
Alignment explanation
Indices: 77754675--77754745 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 30
77754665 TTTAATATTT
* * * *
77754675 TATATTTTTATAATTTTTAAAAGATCAGAT
1 TATAATTTTACAATTTTTAAAAGATCAAAA
*
77754705 TA-AACTTTTACAATTTTTAAGAAGATGAAAA
1 TATAA-TTTTACAATTTTTAA-AAGATCAAAA
77754736 TATAATTTTA
1 TATAATTTTA
77754746 TTTTTATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
29 1 0.03
30 16 0.48
31 14 0.42
32 2 0.06
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (30 bp):
TATAATTTTACAATTTTTAAAAGATCAAAA
Found at i:77755967 original size:16 final size:16
Alignment explanation
Indices: 77755934--77755967 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77755924 TTAAATTGTT
* *
77755934 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
77755950 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
77755966 AA
1 AA
77755968 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:77760748 original size:16 final size:16
Alignment explanation
Indices: 77760715--77760748 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77760705 GGAGATTGTT
* *
77760715 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
77760731 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
77760747 AA
1 AA
77760749 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:77763517 original size:21 final size:21
Alignment explanation
Indices: 77763471--77763532 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
77763461 TAATATTAAT
* *
77763471 ATTTT-AAATATTTAATTAAAA
1 ATTTTAAAATATTAAATT-ATA
77763492 TATTTTAAAAT-TTGAAATTATA
1 -ATTTTAAAATATT-AAATTATA
77763514 ATTTTAAAATATTAAATTA
1 ATTTTAAAATATTAAATTA
77763533 ATTCCAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
21 16 0.46
22 11 0.31
23 8 0.23
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTTTAAAATATTAAATTATA
Found at i:77765019 original size:19 final size:20
Alignment explanation
Indices: 77764993--77765038 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
77764983 TTTATGGGTT
* *
77764993 TTTTTTTTTCATTTTTAGGAA
1 TTTTTTTAT-ATTTTAAGGAA
77765014 TTTTTTTATATTTTAAAGGAA
1 TTTTTTTATATTTT-AAGGAA
77765035 TTTT
1 TTTT
77765039 GAGTTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.65
Consensus pattern (20 bp):
TTTTTTTATATTTTAAGGAA
Found at i:77765273 original size:28 final size:26
Alignment explanation
Indices: 77765208--77765273 Score: 62
Period size: 28 Copynumber: 2.4 Consensus size: 26
77765198 TAATATATTT
* *
77765208 TTTTAGTTTTTTGATAATTTTCTAAG
1 TTTTAGTTTTTTGAGAATTTTATAAG
*
77765234 TTTTAATATTTTTGAGGAATTTTAATATA-
1 TTTTAGT-TTTTTGA-GAATTTT-ATA-AG
77765263 TTTTAGTTTTT
1 TTTTAGTTTTT
77765274 CTCATATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
26 6 0.19
27 7 0.22
28 10 0.31
29 8 0.25
30 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.62
Consensus pattern (26 bp):
TTTTAGTTTTTTGAGAATTTTATAAG
Found at i:77774497 original size:29 final size:29
Alignment explanation
Indices: 77774449--77774508 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
77774439 TCTAGTTTTA
*
77774449 AATTGATATTAATTAATTTAAATTTCATT
1 AATTGATATTAAGTAATTTAAATTTCATT
* *
77774478 AATTGATATTAAGTAGTTTAAATTTTATT
1 AATTGATATTAAGTAATTTAAATTTCATT
77774507 AA
1 AA
77774509 GTCAAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (29 bp):
AATTGATATTAAGTAATTTAAATTTCATT
Found at i:77779515 original size:20 final size:18
Alignment explanation
Indices: 77779485--77779529 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
77779475 TATTTTTAAT
77779485 TTAATTTTTTCTCCTTTTG
1 TTAATTTTTTCT-CTTTTG
77779504 TTAATCTTTTTCTCTTTT-
1 TTAAT-TTTTTCTCTTTTG
77779522 TT-ATTTTT
1 TTAATTTTT
77779530 GGGAAAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.16
17 2 0.08
18 2 0.08
19 10 0.40
20 7 0.28
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.73
Consensus pattern (18 bp):
TTAATTTTTTCTCTTTTG
Found at i:77784768 original size:13 final size:13
Alignment explanation
Indices: 77784723--77784766 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 13
77784713 TTAACTGTTA
*
77784723 AAAATTTTATATG
1 AAAATTTTAAATG
77784736 ACATAATTTTAAATG
1 A-A-AATTTTAAATG
77784751 AAAATTTTAAA-G
1 AAAATTTTAAATG
77784763 AAAA
1 AAAA
77784767 ATAAGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 5 0.18
13 10 0.36
14 2 0.07
15 11 0.39
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (13 bp):
AAAATTTTAAATG
Found at i:77784783 original size:15 final size:16
Alignment explanation
Indices: 77784763--77784799 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
77784753 AATTTTAAAG
77784763 AAAAATAAG-TATTAT
1 AAAAATAAGATATTAT
*
77784778 AAAAAT-AGATGTTAT
1 AAAAATAAGATATTAT
77784793 AAAAATA
1 AAAAATA
77784800 TTGGTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (16 bp):
AAAAATAAGATATTAT
Found at i:77788014 original size:31 final size:31
Alignment explanation
Indices: 77787963--77788021 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
77787953 AAAACCCTCA
**
77787963 AATAATTTAATAACTTAAATGGAAACTTTCT
1 AATAATTTAATAACCAAAATGGAAACTTTCT
* *
77787994 AATAATTTAATGACCAAAATGTAAACTT
1 AATAATTTAATAACCAAAATGGAAACTT
77788022 ACTTAACATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (31 bp):
AATAATTTAATAACCAAAATGGAAACTTTCT
Found at i:77788881 original size:21 final size:21
Alignment explanation
Indices: 77788857--77788896 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
77788847 TACGAACGCT
*
77788857 AAACCTGAAACCCTGAACCTC
1 AAACCTCAAACCCTGAACCTC
* *
77788878 AAACTTCAAACTCTGAACC
1 AAACCTCAAACCCTGAACC
77788897 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.35, G:0.07, T:0.17
Consensus pattern (21 bp):
AAACCTCAAACCCTGAACCTC
Found at i:77789617 original size:19 final size:20
Alignment explanation
Indices: 77789583--77789620 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
77789573 AAAAGATATT
*
77789583 CAAAATAATTAATAAAAAAA
1 CAAAATAATAAATAAAAAAA
77789603 CAAAA-AATAAATAAAAAA
1 CAAAATAATAAATAAAAAA
77789621 CCTATCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (20 bp):
CAAAATAATAAATAAAAAAA
Found at i:77798236 original size:17 final size:17
Alignment explanation
Indices: 77798182--77798534 Score: 171
Period size: 17 Copynumber: 19.9 Consensus size: 17
77798172 TTAAAAAAAA
77798182 AAACACGAAAA-TTTTG
1 AAACACGAAAATTTTTG
* *
77798198 AAACACGAGATTTCTTTG
1 AAACACGAAAATT-TTTG
*
77798216 AAACACGAAAATTTATG
1 AAACACGAAAATTTTTG
** *
77798233 AAACACGGTCAATTTCTTA
1 AAACAC-GAAAATTT-TTG
** *
77798252 AAACGTGAAAGTTTTTGG
1 AAACACGAAAATTTTT-G
**
77798270 AAA-ACGGGAATTTTTTTTG
1 AAACAC--GAA-AATTTTTG
*
77798289 AAACACGAAAAATTTTG
1 AAACACGAAAATTTTTG
*
77798306 AAACACTG-GAA-TTTTG
1 AAACAC-GAAAATTTTTG
* * *
77798322 AAAACACGAGGATTTTTTT
1 -AAACACGA-AAATTTTTG
* *
77798341 AAATACGAAAA-ATTTG
1 AAACACGAAAATTTTTG
*
77798357 AAAACAAGAAAATTTTTG
1 -AAACACGAAAATTTTTG
* *
77798375 AAATACGAAAATTTTAG
1 AAACACGAAAATTTTTG
77798392 AAACACGAAAATTTTTG
1 AAACACGAAAATTTTTG
*
77798409 AAACAC-AGAAGTTTTTAG
1 AAACACGA-AAATTTTT-G
* *
77798427 AAAACATGAAAAATTTTG
1 -AAACACGAAAATTTTTG
* **
77798445 AAA-ATTGGAATTTTTTTTG
1 AAACA--CGAA-AATTTTTG
*
77798464 AAAACACGAGAATTTTTG
1 -AAACACGAAAATTTTTG
*
77798482 AAAAACATGAAAATTTTTG
1 --AAACACGAAAATTTTTG
* **
77798501 CAACACGGGAATTTTTG
1 AAACACGAAAATTTTTG
77798518 AAAACACGAAAAATTTT
1 -AAACACG-AAAATTTT
77798535 CCGATTTTTA
Statistics
Matches: 250, Mismatches: 59, Indels: 53
0.69 0.16 0.15
Matches are distributed among these distances:
16 20 0.08
17 99 0.40
18 63 0.25
19 56 0.22
20 11 0.04
21 1 0.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (17 bp):
AAACACGAAAATTTTTG
Found at i:77798460 original size:36 final size:36
Alignment explanation
Indices: 77798356--77798485 Score: 115
Period size: 37 Copynumber: 3.6 Consensus size: 36
77798346 CGAAAAATTT
* **
77798356 GAAAACAAGAAAATTTTTGAAATAC-GAA-AATTTTA
1 GAAAACACGAAAATTTTTGAAA-ACAGAATGTTTTTA
77798391 G-AAACACGAAAATTTTTGAAACACAGAA-GTTTTTA
1 GAAAACACGAAAATTTTTGAAA-ACAGAATGTTTTTA
* * ** * *
77798426 GAAAACATGAAAAATTTTGAAAATTGGAATTTTTTTT
1 GAAAACACGAAAATTTTTGAAAA-CAGAATGTTTTTA
*
77798463 GAAAACACGAGAATTTTTGAAAA
1 GAAAACACGAAAATTTTTGAAAA
77798486 ACATGAAAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
34 21 0.27
35 11 0.14
36 21 0.27
37 25 0.32
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (36 bp):
GAAAACACGAAAATTTTTGAAAACAGAATGTTTTTA
Found at i:77798506 original size:36 final size:35
Alignment explanation
Indices: 77798466--77798534 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
77798456 TTTTTTTGAA
* *
77798466 AACACGAGAATTTTTGAAAAACATGAAAATTTTTGC
1 AACACGAGAATTTTTG-AAAACACGAAAAATTTTGC
*
77798502 AACACGGGAATTTTTGAAAACACGAAAAATTTT
1 AACACGAGAATTTTTGAAAACACGAAAAATTTT
77798535 CCGATTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 15 0.50
36 15 0.50
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (35 bp):
AACACGAGAATTTTTGAAAACACGAAAAATTTTGC
Found at i:77798672 original size:21 final size:21
Alignment explanation
Indices: 77798638--77798680 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
77798628 TGTTACCTTA
*
77798638 TTTTTGAAAAACACGAGAAATT
1 TTTTTGAAAAACAC-AAAAATT
*
77798660 TTTTTG-AAGACACAAAAATT
1 TTTTTGAAAAACACAAAAATT
77798680 T
1 T
77798681 CGAAACCCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 6 0.32
22 6 0.32
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (21 bp):
TTTTTGAAAAACACAAAAATT
Found at i:77798875 original size:17 final size:18
Alignment explanation
Indices: 77798849--77798895 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
77798839 ATTATTTAGA
*
77798849 ATAAAATAAAATAAAAAT
1 ATAAATTAAAATAAAAAT
*
77798867 -TAAATTAAATTAAAAAT
1 ATAAATTAAAATAAAAAT
77798884 ATAAATATAAAA
1 ATAAAT-TAAAA
77798896 ATGCATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 15 0.62
18 5 0.21
19 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
ATAAATTAAAATAAAAAT
Found at i:77799041 original size:7 final size:7
Alignment explanation
Indices: 77799029--77799079 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
77799019 GAATTGAACC
77799029 TCTTTTT
1 TCTTTTT
77799036 TCTTTTT
1 TCTTTTT
77799043 TCTTTTT
1 TCTTTTT
* *
77799050 TC-CTTC
1 TCTTTTT
77799056 TC-TTTT
1 TCTTTTT
77799062 TCTTTTCT
1 TCTTTT-T
*
77799070 TTTTTTT
1 TCTTTTT
77799077 TCT
1 TCT
77799080 CTGCTGGGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 8 0.22
7 22 0.61
8 6 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (7 bp):
TCTTTTT
Found at i:77799371 original size:3 final size:3
Alignment explanation
Indices: 77799363--77799408 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
77799353 TCTTTTTTCT
*
77799363 TTC TTC TTC CTC TT- TTC TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
77799409 AAAGTCTAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:77799376 original size:24 final size:24
Alignment explanation
Indices: 77799363--77799408 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
77799353 TCTTTTTTCT
77799363 TTCTTCTTCCTCTTTTCTTCTTCC
1 TTCTTCTTCCTCTTTTCTTCTTCC
*
77799387 TTCTTCTTCCT-TCTTCTTCTTC
1 TTCTTCTTCCTCTTTTCTTCTTC
77799409 AAAGTCTAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (24 bp):
TTCTTCTTCCTCTTTTCTTCTTCC
Found at i:77799392 original size:10 final size:10
Alignment explanation
Indices: 77799377--77799405 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
77799367 TCTTCCTCTT
77799377 TTCTTCTTCC
1 TTCTTCTTCC
77799387 TTCTTCTTCC
1 TTCTTCTTCC
77799397 TTCTTCTTC
1 TTCTTCTTC
77799406 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:77799393 original size:13 final size:13
Alignment explanation
Indices: 77799363--77799408 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
77799353 TCTTTTTTCT
77799363 TTCTTCTTCC-TC
1 TTCTTCTTCCTTC
77799375 TT-TTCTT-CTTCC
1 TTCTTCTTCCTT-C
77799387 TTCTTCTTCCTTC
1 TTCTTCTTCCTTC
77799400 TTCTTCTTC
1 TTCTTCTTC
77799409 AAAGTCTAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.20
12 5 0.17
13 15 0.50
14 3 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCTTCTTCCTTC
Found at i:77799826 original size:30 final size:30
Alignment explanation
Indices: 77799792--77799887 Score: 122
Period size: 30 Copynumber: 3.2 Consensus size: 30
77799782 TTTAGGATTA
* * *
77799792 AAATTTAATGAAAGTTTAGGGGTCTAAGTG
1 AAATTTAAAGAAAGTTTAGGGGTCAAAATG
*
77799822 AAATTTAAAGAAAGTTTAAGGGTCAAAATG
1 AAATTTAAAGAAAGTTTAGGGGTCAAAATG
*
77799852 AAATTT-AGGAAAAGTTTAGGGGTCAAAATG
1 AAATTTAAAG-AAAGTTTAGGGGTCAAAATG
*
77799882 CAATTT
1 AAATTT
77799888 TTATTTTTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 2 0.03
30 56 0.97
ACGTcount: A:0.43, C:0.04, G:0.23, T:0.30
Consensus pattern (30 bp):
AAATTTAAAGAAAGTTTAGGGGTCAAAATG
Found at i:77799907 original size:13 final size:14
Alignment explanation
Indices: 77799883--77799915 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
77799873 GTCAAAATGC
*
77799883 AATTTTTATTTTTA
1 AATTTTTATTTTGA
77799897 AATTTTT-TTTTGA
1 AATTTTTATTTTGA
77799910 AATTTT
1 AATTTT
77799916 GAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
AATTTTTATTTTGA
Found at i:77801043 original size:21 final size:20
Alignment explanation
Indices: 77801017--77801077 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
77801007 AAAATTTTGT
77801017 ATTTTTAATTTTCAGAATTTA
1 ATTTTTAATTTTCA-AATTTA
* *
77801038 ATTTTTTCATTTTTAAATTTA
1 A-TTTTTAATTTTCAAATTTA
77801059 A-TTTTAATTATT-AAATTTA
1 ATTTTTAATT-TTCAAATTTA
77801078 TTAAATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 14 0.40
20 2 0.06
21 8 0.23
22 11 0.31
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (20 bp):
ATTTTTAATTTTCAAATTTA
Found at i:77801080 original size:9 final size:9
Alignment explanation
Indices: 77801066--77801090 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77801056 TTAATTTTAA
77801066 TTATTAAAT
1 TTATTAAAT
77801075 TTATTAAAT
1 TTATTAAAT
77801084 TTATTAA
1 TTATTAA
77801091 CGTGATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTATTAAAT
Found at i:77801361 original size:29 final size:31
Alignment explanation
Indices: 77801321--77801385 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 31
77801311 GAAAATTTTG
* *
77801321 AAATTTAATTTTTGTATTTTT-ATATTT-AA
1 AAATTTAATTTTTCTATTTTTCAGATTTCAA
*
77801350 AAATTTAGTTTTTCTATTTTTCAGATTTCAA
1 AAATTTAATTTTTCTATTTTTCAGATTTCAA
77801381 AAATT
1 AAATT
77801386 AGATCCAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 19 0.61
30 5 0.16
31 7 0.23
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (31 bp):
AAATTTAATTTTTCTATTTTTCAGATTTCAA
Found at i:77801611 original size:2 final size:2
Alignment explanation
Indices: 77801604--77801644 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
77801594 CTTCCTCTTC
77801604 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
77801645 ACACACACAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:77801649 original size:2 final size:2
Alignment explanation
Indices: 77801644--77801693 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
77801634 CTCTCTCTCT
77801644 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77801686 CA CA CA CA
1 CA CA CA CA
77801694 TTTCATCGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:77822385 original size:39 final size:35
Alignment explanation
Indices: 77822330--77822427 Score: 88
Period size: 39 Copynumber: 2.6 Consensus size: 35
77822320 GTAAACATTC
*
77822330 AAAAAATATTAAAATTACTATATATAAAATTTTAATAAAT
1 AAAAAATA-TATAATTA-TATATATAAAA--TTAA-AAAT
* *
77822370 AAAAAATATATAATTATTAAATATTAAATTAAAAAT
1 AAAAAATATATAATTA-TATATATAAAATTAAAAAT
* *
77822406 TAAAAATAATATAAATATATAT
1 AAAAAAT-ATATAATTATATAT
77822428 TTTATTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
36 14 0.28
37 12 0.24
39 16 0.32
40 8 0.16
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (35 bp):
AAAAAATATATAATTATATATATAAAATTAAAAAT
Found at i:77827721 original size:23 final size:24
Alignment explanation
Indices: 77827676--77827723 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
77827666 AAATTTTAAA
77827676 ATTATATTATAAAAAATAAATTTAT
1 ATTATATTATAAAAAAT-AATTTAT
*
77827701 ATTAT-TTCATAAAAAATATTTTA
1 ATTATATT-ATAAAAAATAATTTA
77827724 AAATTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTATATTATAAAAAATAATTTAT
Found at i:77832622 original size:19 final size:21
Alignment explanation
Indices: 77832590--77832636 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
77832580 TTTTTATTTT
*
77832590 CTTCACCCCAACTC-GTTTCTC
1 CTTC-CCCCAACTCTCTTTCTC
*
77832611 CTTCCCCC-ACTCTCTTTCTT
1 CTTCCCCCAACTCTCTTTCTC
77832631 CTTCCC
1 CTTCCC
77832637 TCGATCTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 15 0.65
21 4 0.17
ACGTcount: A:0.09, C:0.51, G:0.02, T:0.38
Consensus pattern (21 bp):
CTTCCCCCAACTCTCTTTCTC
Found at i:77835831 original size:48 final size:48
Alignment explanation
Indices: 77835686--77835862 Score: 255
Period size: 48 Copynumber: 3.6 Consensus size: 48
77835676 TTGGATACAA
* *
77835686 ACAATGGCAGATATACACAATAAACATCAGTTTGATAATGGCATCCAT
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGGCATCCAT
* *
77835734 ATAATGACAGATACAAACAATAAACAAACATCAGTTTGATAATGGCATCCAT
1 ACAATGGCAGATACAAACAAT----AAACATCAGTTTGATAATGGCATCCAT
*
77835786 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGACATCCAT
1 ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGGCATCCAT
* *
77835834 ACAATGGCAGATAAAAACAATAAATATCA
1 ACAATGGCAGATACAAACAATAAACATCA
77835863 TGCACATGGC
Statistics
Matches: 116, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
48 70 0.60
52 46 0.40
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (48 bp):
ACAATGGCAGATACAAACAATAAACATCAGTTTGATAATGGCATCCAT
Found at i:77835923 original size:6 final size:6
Alignment explanation
Indices: 77835914--77835992 Score: 59
Period size: 6 Copynumber: 13.2 Consensus size: 6
77835904 AAATAACCCC
* * * * * * *
77835914 AAATCA AAATCA AAATCT AAATCT AAATCT AAATCT AAAGCT AAATCG
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* * **
77835962 AGATCG AAATTG AAATCA AAATCA AAATCA A
1 AAATCA AAATCA AAATCA AAATCA AAATCA A
77835993 TGAGTGTTTC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.56, C:0.15, G:0.06, T:0.23
Consensus pattern (6 bp):
AAATCA
Found at i:77835941 original size:18 final size:18
Alignment explanation
Indices: 77835914--77835990 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 18
77835904 AAATAACCCC
*
77835914 AAATCAAAATCAAAATCT
1 AAATCTAAATCAAAATCT
*
77835932 AAATCTAAATCTAAATCT
1 AAATCTAAATCAAAATCT
* * * *
77835950 AAAGCTAAATCGAGATCG
1 AAATCTAAATCAAAATCT
*
77835968 AAAT-TGAAATCAAAATCA
1 AAATCT-AAATCAAAATCT
77835986 AAATC
1 AAATC
77835991 AATGAGTGTT
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.55, C:0.16, G:0.06, T:0.23
Consensus pattern (18 bp):
AAATCTAAATCAAAATCT
Found at i:77836043 original size:18 final size:18
Alignment explanation
Indices: 77836001--77836073 Score: 85
Period size: 18 Copynumber: 4.1 Consensus size: 18
77835991 AATGAGTGTT
* *
77836001 TCAAAATTGAAATCAAAA
1 TCAAAATAGAAATCGAAA
**
77836019 TTGAAATAGAAATCGAAA
1 TCAAAATAGAAATCGAAA
77836037 TCAAAATCAG-AATCGAAA
1 TCAAAAT-AGAAATCGAAA
*
77836055 TCAAAATTGAAATCGAAA
1 TCAAAATAGAAATCGAAA
77836073 T
1 T
77836074 AATCCTAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
17 1 0.02
18 43 0.93
19 2 0.04
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (18 bp):
TCAAAATAGAAATCGAAA
Found at i:77836044 original size:12 final size:12
Alignment explanation
Indices: 77835914--77836073 Score: 76
Period size: 12 Copynumber: 13.3 Consensus size: 12
77835904 AAATAACCCC
*
77835914 AAATCAAAATCA
1 AAATCAAAATCG
* *
77835926 AAATCTAAATCT
1 AAATCAAAATCG
* *
77835938 AAATCTAAATCT
1 AAATCAAAATCG
* *
77835950 AAAGCTAAATCG
1 AAATCAAAATCG
* * *
77835962 AGATCGAAATTG
1 AAATCAAAATCG
*
77835974 AAATCAAAATCA
1 AAATCAAAATCG
*
77835986 AAATCAATGAGT-G
1 AAATCAA--AATCG
** *
77835999 -TTTCAAAATTG
1 AAATCAAAATCG
*
77836010 AAATCAAAATTG
1 AAATCAAAATCG
77836022 AAAT-AGAAATCG
1 AAATCA-AAATCG
77836034 AAATCAAAATC-
1 AAATCAAAATCG
* *
77836045 AGAATCGAAATCA
1 A-AATCAAAATCG
**
77836058 AAATTGAAATCG
1 AAATCAAAATCG
77836070 AAAT
1 AAAT
77836074 AATCCTAAAT
Statistics
Matches: 117, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
10 2 0.02
11 3 0.03
12 108 0.92
13 2 0.02
14 2 0.02
ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24
Consensus pattern (12 bp):
AAATCAAAATCG
Found at i:77836067 original size:6 final size:6
Alignment explanation
Indices: 77836004--77836073 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
77835994 GAGTGTTTCA
* * * * *
77836004 AAATTG AAATCA AAATTG AAATAG AAATCG AAATCA AAATC- AGAATCG
1 AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG AAATCG A-AATCG
* *
77836052 AAATCA AAATTG AAATCG AAAT
1 AAATCG AAATCG AAATCG AAAT
77836074 AATCCTAAAT
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
5 1 0.02
6 49 0.96
7 1 0.02
ACGTcount: A:0.57, C:0.10, G:0.11, T:0.21
Consensus pattern (6 bp):
AAATCG
Found at i:77839037 original size:13 final size:13
Alignment explanation
Indices: 77839019--77839043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77839009 CTGTTTCTTA
77839019 TTTTATTATAATT
1 TTTTATTATAATT
77839032 TTTTATTATAAT
1 TTTTATTATAAT
77839044 ATATTTCTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTATTATAATT
Found at i:77839177 original size:31 final size:30
Alignment explanation
Indices: 77839130--77839304 Score: 233
Period size: 30 Copynumber: 5.8 Consensus size: 30
77839120 AAACCCAATT
* *
77839130 TAGCCACACCTTTTCCACCACCAACTCCAC
1 TAGCCACTCTTTTTCCACCACCAACTCCAC
77839160 TAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACTC-TTTTTCCACCACCAACTCCAC
* * * *
77839191 TAGCCACACCTTGTCCACTACCAACTCCAC
1 TAGCCACTCTTTTTCCACCACCAACTCCAC
77839221 TAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACTC-TTTTTCCACCACCAACTCCAC
* *
77839252 TAGCCACTCTTTTTCCACCACTAACTCCAT
1 TAGCCACTCTTTTTCCACCACCAACTCCAC
* * *
77839282 TAGCCACACCTTCTCCACCACCA
1 TAGCCACTCTTTTTCCACCACCA
77839305 CTTGTACCTA
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
30 72 0.57
31 55 0.43
ACGTcount: A:0.25, C:0.46, G:0.04, T:0.25
Consensus pattern (30 bp):
TAGCCACTCTTTTTCCACCACCAACTCCAC
Found at i:77839208 original size:61 final size:61
Alignment explanation
Indices: 77839130--77839288 Score: 264
Period size: 61 Copynumber: 2.6 Consensus size: 61
77839120 AAACCCAATT
77839130 TAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
* *
77839191 TAGCCACACCTTGTCCACTACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
* * * *
77839252 TAGCCACTCTTTTTCCACCACTAACTCCATTAGCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCACTAGCCAC
77839289 ACCTTCTCCA
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 90 1.00
ACGTcount: A:0.25, C:0.45, G:0.04, T:0.26
Consensus pattern (61 bp):
TAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
Found at i:77839904 original size:27 final size:25
Alignment explanation
Indices: 77839865--77839935 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
77839855 TTTTAAATTT
**
77839865 TATATTACGTATATATATTTTATAC
1 TATATTATTTATATATATTTTATAC
* * * *
77839890 TATTTTATTTATATATCTTTAATAT
1 TATATTATTTATATATATTTTATAC
77839915 TATATTATTTATATATATTTT
1 TATATTATTTATATATATTTT
77839936 TTTTCTACAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (25 bp):
TATATTATTTATATATATTTTATAC
Found at i:77840000 original size:25 final size:25
Alignment explanation
Indices: 77839952--77840037 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
77839942 ACATGTTATC
*
77839952 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
77839974 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
77839999 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
77840022 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
77840038 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:77840034 original size:23 final size:24
Alignment explanation
Indices: 77839954--77840044 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
77839944 ATGTTATCTT
*
77839954 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
77839976 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
77840001 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
77840024 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
77840045 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:77840186 original size:16 final size:15
Alignment explanation
Indices: 77840162--77840209 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
77840152 TATTAATTAT
*
77840162 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
77840178 TATTTTAATATTTTA
1 TATTTTAATATTTTA
77840193 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
77840209 T
1 T
77840210 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:77840197 original size:7 final size:8
Alignment explanation
Indices: 77840162--77840213 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
77840152 TATTAATTAT
*
77840162 TATTCTAA
1 TATTTTAA
*
77840170 TATTTTGA
1 TATTTTAA
77840178 TATTTTAA
1 TATTTTAA
77840186 TATTTT-A
1 TATTTTAA
77840193 TATTTTATA
1 TATTTTA-A
*
77840202 TATTTTAT
1 TATTTTAA
77840210 TATT
1 TATT
77840214 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:77848625 original size:71 final size:69
Alignment explanation
Indices: 77848526--77848701 Score: 210
Period size: 71 Copynumber: 2.5 Consensus size: 69
77848516 CTTTTCAAGG
* * *
77848526 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTT
1 AAAATCGACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTA
77848590 TGTTT
65 TGTTT
** * * *
77848595 ACAAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTT
1 --AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTT
77848660 ATGTTT
64 ATGTTT
* * * *
77848666 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCT
77848702 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 32 0.35
71 58 0.63
72 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (69 bp):
AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTAT
GTTT
Found at i:77848822 original size:72 final size:73
Alignment explanation
Indices: 77848705--77848895 Score: 235
Period size: 72 Copynumber: 2.6 Consensus size: 73
77848695 TAAGCCTTTT
* * * * * * *
77848705 AATTTTTGTTTTTCAA-AATCAGCCCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
*
77848769 GTATTTTC
66 GTAATTTC
* * *
77848777 AATTTTTGTGTTCT-AA-TATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGATGA
1 AATTTCTGT-TTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
77848840 GGTAATTTC
65 GGTAATTTC
* *
77848849 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
77848896 ACCTTTTAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
71 3 0.03
72 69 0.68
73 30 0.29
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (73 bp):
AATTTCTGTTTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
GTAATTTC
Found at i:77848945 original size:199 final size:194
Alignment explanation
Indices: 77848526--77849053 Score: 702
Period size: 199 Copynumber: 2.7 Consensus size: 194
77848516 CTTTTCAAGG
* * ** * * *
77848526 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* * * * *
77848591 GT-TTAC-AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTT
66 GTGTT-CTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTT
* * ** **
77848654 TAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 CAATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
*
77848719 AAAATCAGCCCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* ** *
77848784 GTGTTCTAATATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
66 GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTC
* *
77848849 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACT
131 AATTTATGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TACT
77848913 TTTTC
190 TTTTC
77848918 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* * *
77848983 GTGTTTTAATTTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
66 GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCCGAGGTATTT
77849048 TCAATT
129 TCAATT
77849054 AAGCCTTTCA
Statistics
Matches: 292, Mismatches: 33, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
193 60 0.21
194 59 0.20
195 1 0.00
197 1 0.00
198 36 0.12
199 116 0.40
201 19 0.07
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.35
Consensus pattern (194 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTC
AATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
Found at i:77849150 original size:87 final size:89
Alignment explanation
Indices: 77848994--77849198 Score: 265
Period size: 88 Copynumber: 2.3 Consensus size: 89
77848984 TGTTTTAATT
*
77848994 TCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTAAGCC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-CCGAGGTATTTTCAATTAAGCC
*
77849059 TTTCAAT-TTCTGTCTTTT-AAAAAA
65 TTTCAATATTATGT-TTTTGAAAAAA
* ** *
77849083 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-CCGAGGTATTTTCCATTTCTG-T
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCCGAGGTATTTT-CAATTAAGCC
* *
77849146 TTTCATTATTATGTTTTTGAAAGAA
65 TTTCAATATTATGTTTTTGAAAAAA
* *
77849171 TCAACTCATATTGCGAGAAGTGGGTTGA
1 TCAACTCATATTGCGAGAGGTGAGTTGA
77849199 ACCTTTTAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
87 22 0.21
88 41 0.40
89 40 0.39
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (89 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCCGAGGTATTTTCAATTAAGCCT
TTCAATATTATGTTTTTGAAAAAA
Found at i:77849292 original size:13 final size:13
Alignment explanation
Indices: 77849274--77849307 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
77849264 CGCTGAGGTA
*
77849274 TTTTCAATTTCTG
1 TTTTCAATTTATG
77849287 TTTTCAATTTATG
1 TTTTCAATTTATG
77849300 TTGTTCAA
1 TT-TTCAA
77849308 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:77849371 original size:140 final size:142
Alignment explanation
Indices: 77849079--77849441 Score: 525
Period size: 140 Copynumber: 2.5 Consensus size: 142
77849069 TGTCTTTTAA
* * * *
77849079 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
* *
77849144 GTTTTCATTATTATGTTTTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
66 GTTTTCAATATTATGTTGTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
77849209 TTCTACTTTTTC
131 TTCTACTTTTTC
*
77849221 AAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
* *
77849286 GTTTTCAAT-TTATGTTGTT-CAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
66 GTTTTCAATATTATGTTGTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
77849349 TTCTACTTTTTC
131 TTCTACTTTTTC
* *
77849361 AAAATTAGCTCATATTGCGAGAGGTGAGGTGAGTTGAGCCTC-GGTTTACATGCTGAGGTATTTT
1 AAAATCAGCTCATATTGC--GA---GAGGTGAGTTGAGCCTCAGG--T-CACGCTGAGGTATTTT
77849425 CAATTTCTGTCTTTCAA
58 CAATTTCTGT-TTTCAA
77849442 AAAAAAAAAT
Statistics
Matches: 200, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
140 71 0.35
141 9 0.05
142 70 0.35
144 2 0.01
145 16 0.08
146 1 0.00
147 25 0.12
148 6 0.03
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (142 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
GTTTTCAATATTATGTTGTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
TTCTACTTTTTC
Found at i:77849499 original size:80 final size:78
Alignment explanation
Indices: 77849414--77849711 Score: 385
Period size: 80 Copynumber: 3.8 Consensus size: 78
77849404 GTTTACATGC
77849414 TGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTG
1 TGAGGTATTTTCAATTTCTGT-TTTCAAAAAAAAAAA-TCAACTCATATTGCGAGAAATGAGTTG
77849479 AGCCTCAAGACACGT
64 AGCCTCAAGACACGT
* * *
77849494 TGAGGTAATTTCAATTTCTGTTTTC------AAAATTCAACTTATATTGCGAGAAATGAGTTGAG
1 TGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
77849553 CCTCAAGACACGT
66 CCTCAAGACACGT
* **
77849566 TGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAG
1 TGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
* * *
77849631 CCTC-GGTTCACATGC
66 CCTCAAG---ACACGT
* * **
77849646 TGAGGTATTTTCAATTTCTGTTTTTAAAAAGAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
77849711 C
66 C
77849712 TTCAGATTAC
Statistics
Matches: 196, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
72 65 0.33
73 4 0.02
77 1 0.01
78 35 0.18
79 4 0.02
80 87 0.44
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (78 bp):
TGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
CCTCAAGACACGT
Found at i:77849564 original size:72 final size:72
Alignment explanation
Indices: 77849447--77849674 Score: 287
Period size: 72 Copynumber: 3.1 Consensus size: 72
77849437 TTCAAAAAAA
* *
77849447 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
77849512 TGTTTTC
66 TGTTTTC
77849519 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
77849584 TGTTTTC
66 TGTTTTC
* ** * * *
77849591 AAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATT
1 ------AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTATT
*
77849655 TTCAATTTCTGTTTTT
57 TTCAATTTCTGTTTTC
77849671 AAAA
1 AAAA
77849675 AGAAAAATCA
Statistics
Matches: 138, Mismatches: 9, Indels: 16
0.85 0.06 0.10
Matches are distributed among these distances:
72 70 0.51
74 4 0.03
77 1 0.01
78 35 0.25
80 28 0.20
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (72 bp):
AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTTTTC
Found at i:77849733 original size:80 final size:80
Alignment explanation
Indices: 77849386--77849736 Score: 375
Period size: 80 Copynumber: 4.5 Consensus size: 80
77849376 TGCGAGAGGT
* * **
77849386 GAGGTGAGTTGAGCCTCGGTTTACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAA
1 GAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTTCAATTTCTGT-TTTCAAAAAAAAAAA
*
77849451 TTCAACTCATATTGCGA
65 -TCAACTTATATTGCGA
** * ** * *
77849468 GAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTAATTTCAATTTCTGTTTTC------AAAATT
1 GAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAAT
77849525 CAACTTATATTGCGA
66 CAACTTATATTGCGA
** * **
77849540 GAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAAT
1 GAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAAT
77849603 CAACTTATATTGCGA
66 CAACTTATATTGCGA
* * *
77849618 GAGGTGAGTTGAGCCTC-GGTT-CACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAGAAAA
1 GAGGTGAGTTGAGCCTCAGATTACACA--CTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAA
*
77849681 ATCAACTCATATTGCGA
64 ATCAACTTATATTGCGA
* *
77849698 GAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTT
1 GAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTT
77849737 TTTCAATTCA
Statistics
Matches: 233, Mismatches: 24, Indels: 26
0.82 0.08 0.09
Matches are distributed among these distances:
72 65 0.28
73 4 0.02
78 38 0.16
79 4 0.02
80 100 0.43
81 3 0.01
82 19 0.08
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (80 bp):
GAGGTGAGTTGAGCCTCAGATTACACACTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAAAAAT
CAACTTATATTGCGA
Found at i:77850283 original size:75 final size:74
Alignment explanation
Indices: 77850002--77850319 Score: 360
Period size: 77 Copynumber: 4.3 Consensus size: 74
77849992 AATTTTCATT
* * * * * *
77850002 TTTTTAATTTATG-TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC--AAGAC
1 TTTTCAATTTTTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
77850064 GCTGAGGTA
66 GCTGAGGTA
* * * *
77850073 ATTTCAATTTTTGTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTTTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
*
77850137 GCTGAGATA
66 GCTGAGGTA
*
77850146 TTTTCAAATTCTATT-TTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 TTTTC-AATT-T-TTGTTT-TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
77850210 ACACGCTGAGGTA
62 ACACGCTGAGGTA
* *
77850223 TTTTCAATTTTTGCTTTTTAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCA
1 TTTTCAATTTTTG-TTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--A
*
77850288 CACG-TCGAGGTC
63 CACGCT-GAGGTA
* * *
77850300 CTTTCAAATTCTGTTTTTAA
1 TTTTCAATTTTTGTTTTTAA
77850320 TTTCTTTTTT
Statistics
Matches: 211, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
71 47 0.22
72 2 0.01
73 15 0.07
74 6 0.03
75 47 0.22
76 17 0.08
77 77 0.36
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTTCAATTTTTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
GCTGAGGTA
Found at i:77850468 original size:417 final size:417
Alignment explanation
Indices: 77849942--77850697 Score: 1005
Period size: 417 Copynumber: 1.8 Consensus size: 417
77849932 TTAATTTCAA
* * *
77849942 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCATTTTTTT
1 CTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACGCTGAGGTATTTTCAATTTTCATATTTTC
* * *
77850007 AATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG-ACGCTGAGG
65 AATTTATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACACTGAGG
* ** * *
77850071 TAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
130 TAATTTCAA--TTT-ATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
77850135 ACGCTGAGATATTTTCAA-AT-T-CT-ATTT-T-TATCAAAAAAATCAACTCATATTGCGAGAGG
192 ACGCTGAGATATTTTCAATATCTGCTAATTTATGTATCAAAAAAATCAACTCATATTGCGAGAGG
* * *
77850194 TGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTTTGCTTTTT-AAAAGAATCAACTCAT
257 TGAGTTGAGCCTC---ACACGCTGAAGTATTTTCAATTTCT-ATTTTTCAAAA-AATCAACTCAT
77850258 ATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTCTGTTTTTAATTT
317 ATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTCTGTTTTTAATTT
77850323 CTTTTTTTTTTAATTTATGTGTTTCAAAAAAATCAG
382 CTTTTTTTTTTAATTTATGTGTTTCAAAAAAATCAG
* * *
77850359 CTCATATTGCGAGAGGTGAGTTGAACCTCA-ATACGCTGAGGTGTTTTCCA-TTTC-TATTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCATATTTTCA
* * * *
77850421 ATTTCTGTTTTAATTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATT
66 ATTTATG-TTTAA---AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAG-CACACT
*
77850486 GAGGTATTTTCAATTTATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
126 GAGGTAATTTCAATTTATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* * * * * ***
77850551 CCCGTTGAGGTATTTTCAATTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGA
191 CACGCTGAGATATTTTCAATATCTGCT-AATTTATGTATCAAAAAAATCAACTCATATTGCGAGA
* *
77850616 GGTGAGTTGAGCCTCACATGCTGAAGTGTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATT
255 GGTGAGTTGAGCCTCACACGCTGAAGTATTTTCAATTTCTATTTTTCAAAAAATCAACTCATATT
77850681 GCGAGAGGTGAGTTGAG
320 GCGAGAGGTGAGTTGAG
77850698 CCTTGGCTTA
Statistics
Matches: 292, Mismatches: 32, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
413 12 0.04
414 8 0.03
415 17 0.06
416 3 0.01
417 127 0.43
418 1 0.00
419 16 0.05
420 38 0.13
421 25 0.09
422 4 0.01
423 1 0.00
424 40 0.14
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (417 bp):
CTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCATATTTTCA
ATTTATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACACTGAGGT
AATTTCAATTTATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGC
TGAGATATTTTCAATATCTGCTAATTTATGTATCAAAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCACACGCTGAAGTATTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTCTGTTTTTAATTTCTTTTTTTT
TTAATTTATGTGTTTCAAAAAAATCAG
Found at i:77850535 original size:71 final size:71
Alignment explanation
Indices: 77850435--77850572 Score: 240
Period size: 71 Copynumber: 1.9 Consensus size: 71
77850425 CTGTTTTAAT
* *
77850435 TCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
77850500 TTATCA
66 TTATCA
* *
77850506 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
77850571 TT
66 TT
77850573 CTGCTCAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:77850681 original size:71 final size:75
Alignment explanation
Indices: 77850577--77850775 Score: 273
Period size: 71 Copynumber: 2.7 Consensus size: 75
77850567 CAATTTCTGC
* *
77850577 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T-C-ACATGCT
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGCTACACGCT
77850638 GAAGT-GTTT
66 GAAGTAGTTT
*
77850647 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GC-TACACG
* *
77850712 CTGAGGTATTTT
64 CTGAAGTAGTTT
* *
77850724 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
77850776 TCTCGGCTCA
Statistics
Matches: 113, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
70 14 0.12
71 36 0.32
72 1 0.01
74 1 0.01
76 10 0.09
77 17 0.15
78 34 0.30
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (75 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGCTACACGCT
GAAGTAGTTT
Found at i:77850765 original size:78 final size:75
Alignment explanation
Indices: 77850577--77850818 Score: 307
Period size: 78 Copynumber: 3.2 Consensus size: 75
77850567 CAATTTCTGC
*
77850577 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--C-ACATGC
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTACATGC
* *
77850637 TGAAGTGTTT
66 TGAGGTTTTT
* *
77850647 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TACATG
77850712 CTGAGGTATTTT
65 CTGAGGT-TTTT
* * * *
77850724 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCGGCTCACAT
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT-ACAT
77850789 GCTGAGGTCTTTT
64 GCTGAGGT-TTTT
*
77850802 T-AATTTCTGCTTTTCAA
1 TCAATTTCTGTTTTTCAA
77850819 TTTCTGTTTT
Statistics
Matches: 149, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
70 14 0.09
71 36 0.24
72 1 0.01
74 1 0.01
76 12 0.08
77 30 0.20
78 55 0.37
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (75 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTACATGC
TGAGGTTTTT
Found at i:77850820 original size:14 final size:15
Alignment explanation
Indices: 77850795--77850836 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
77850785 ACATGCTGAG
*
77850795 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
77850810 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
77850824 GTTTTTTCAATTT
1 GTCTTTTCAATTT
77850837 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:77850832 original size:15 final size:14
Alignment explanation
Indices: 77850798--77850847 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
77850788 TGCTGAGGTC
77850798 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
77850811 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
77850825 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
77850840 TTTTTCAA
1 TTTTTCAA
77850848 AAATTAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:77850947 original size:73 final size:73
Alignment explanation
Indices: 77850828--77851197 Score: 278
Period size: 73 Copynumber: 4.8 Consensus size: 73
77850818 ATTTCTGTTT
* * * *
77850828 TTTCAATTTATATTTTTCAAAAATTAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
77850893 TGAGGTAA
66 TGAGGTAA
* ** *
77850901 TTTCAATTTCTGTTTGTCAAAAATTAACACATATTGCGAGAGGTGAGTTGAGCCTCGACTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG--GGACAC
**
77850966 GCTGAGGTCT
64 GCTGAGGTAA
** * * * *
77850976 TTTCAATTTCTGTTCT-TCAATTTCTGTTCGTAAAAAAAATCA-ACT-CATATTGCGAGAGGTGA
1 TTTCAATTTCTGTT-TGTCAA-----------AAATTAACTCATATTGC-GA--GAG----GTGA
* * *
77851038 GTTGAGCTTCAGGACACGCTGAGGTATT
47 GTTGAGCCTCGGGACACGCTGAGGTA-A
* * * *
77851066 TTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACG
1 TTTCAATTTCTGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
77851131 CTGAGGTAA
65 CTGAGGTAA
* * *
77851140 TTTCAATTTCTATTTGTCAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGTCTCGG
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
77851198 CTCACATGCT
Statistics
Matches: 230, Mismatches: 41, Indels: 52
0.71 0.13 0.16
Matches are distributed among these distances:
73 88 0.38
74 15 0.07
75 57 0.25
76 1 0.00
79 1 0.00
80 8 0.03
81 3 0.01
82 1 0.00
84 1 0.00
85 3 0.01
86 7 0.03
87 2 0.01
89 12 0.05
90 16 0.07
91 15 0.07
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTAA
Found at i:77850965 original size:177 final size:181
Alignment explanation
Indices: 77850644--77851123 Score: 604
Period size: 177 Copynumber: 2.7 Consensus size: 181
77850634 TGCTGAAGTG
* * * *
77850644 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTAC
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGC-GAC
* * *
77850709 ACGCTGAGGTATTTTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTG
65 ACGCTGAGGTATATTTCAATTTCTGTTTGTC-AAAAAATCAACACATATTGCGAGAGGTGAGTTG
* * *
77850774 AGTCTCGGCTCACATGCTGAGGTCTTTTTAATTTCTGCTT-TTCAATTTCTGTT
129 AGCCTCGACTCACATGCTGAGGTCTTTTCAATTTCTG-TTCTTCAATTTCTGTT
*
77850827 TTTTCAATTTATATTTTTC-AAAAATTAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG-GACA
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
*
77850890 CGCTGAGGTA-ATTTCAATTTCTGTTTGTC-AAAAATTAACACATATTGCGAGAGGTGAGTTGAG
66 CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACACATATTGCGAGAGGTGAGTTGAG
77850953 CCTCGACTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTG--
131 CCTCGACTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTT
* * * *
77851002 --TTC---GTA-A------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG-GACA
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
* * * * *
77851054 CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAG
66 CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACACATATTGCGAGAGGTGAGTTGAG
77851119 CCTCG
131 CCTCG
77851124 GGACACGCTG
Statistics
Matches: 270, Mismatches: 23, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
164 50 0.19
165 16 0.06
166 36 0.13
169 1 0.00
170 2 0.01
173 3 0.01
176 2 0.01
177 74 0.27
179 18 0.07
180 13 0.05
182 37 0.14
183 18 0.07
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (181 bp):
TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACACATATTGCGAGAGGTGAGTTGAG
CCTCGACTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTT
Found at i:77850996 original size:14 final size:14
Alignment explanation
Indices: 77850977--77851004 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77850967 CTGAGGTCTT
77850977 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
77850991 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
77851005 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:77851118 original size:75 final size:73
Alignment explanation
Indices: 77851009--77851234 Score: 276
Period size: 75 Copynumber: 3.0 Consensus size: 73
77850999 CTGTTCGTAA
77851009 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-GGACACGCTGAGGTATTTTT-AATT
77851074 TCTGTTTTTC
64 TCTGTTTTTC
* * * *
77851084 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-GGACACGCTGAGGTATTTTTAATTT
* *
77851149 CTATTTGTC
65 CTGTTTTTC
* * * *
77851158 -AAAAATTAACTCATATTGTGAGAGGTGAGTTGAG-TCTCGGCTCACATGCTGAGGTCTTTTTAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCT-TCGG---ACACGCTGAGGTATTTTTAA
*
77851221 TTTCTGCTTTTC
62 TTTCTGTTTTTC
77851233 AA
1 AA
77851235 TTTCTGTTTT
Statistics
Matches: 128, Mismatches: 18, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
72 2 0.02
73 33 0.26
74 12 0.09
75 80 0.62
76 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGACACGCTGAGGTATTTTTAATTTC
TGTTTTTC
Found at i:77851136 original size:164 final size:163
Alignment explanation
Indices: 77850846--77851150 Score: 441
Period size: 164 Copynumber: 1.9 Consensus size: 163
77850836 TATATTTTTC
* * *
77850846 AAAAATTAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
* * * * **
77850911 TGTTTGTCAAAAATTAACACATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATCAACACATATTGCGAAAGGTGAGTTGAGCCTCGA-GCACACGCTGAGGTAA
77850976 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
130 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
* * *
77851010 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTT
* * *
77851075 CTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCG-GGACACGCTGAGGTA
65 CTGTTTGTC-AAAAATCAACACATATTGCGAAAGGTGAGTTGAGCCTCGAGCACACGCTGAGGTA
77851139 ATTTCAATTTCT
129 ATTTCAATTTCT
77851151 ATTTGTCAAA
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
164 72 0.58
165 16 0.13
166 36 0.29
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (163 bp):
AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
TGTTTGTCAAAAATCAACACATATTGCGAAAGGTGAGTTGAGCCTCGAGCACACGCTGAGGTAAT
TTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
Found at i:77851245 original size:14 final size:14
Alignment explanation
Indices: 77851214--77851264 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
77851204 TGCTGAGGTC
77851214 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
77851227 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
77851241 TTTTTTTCAATTTATA
1 --TTTTTCAATTTCTG
77851257 TTTTTCAA
1 TTTTTCAA
77851265 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
16 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.65
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:77851260 original size:16 final size:16
Alignment explanation
Indices: 77851228--77851261 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77851218 TAATTTCTGC
* *
77851228 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
77851244 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
77851260 TT
1 TT
77851262 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:77851420 original size:77 final size:75
Alignment explanation
Indices: 77851336--77851512 Score: 241
Period size: 77 Copynumber: 2.3 Consensus size: 75
77851326 AAATCTACTT
* **
77851336 TTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGA-GC-TATTTTCAATTTCTGCTTTTCAAA
1 TTGCGAGAAGTGAGTTGAGCCTTGGCTCACACGCTGAGGCGT-TTTT-AATTTCTGCTTTTC--A
77851399 AAAATCAACTCATA
62 AAAATCAACTCATA
* * *
77851413 TTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCGTTTTTAATTTCTGCTTTTCAAAAA
1 TTGCGAGAAGTGAGTTGAGCCTTGGCTCACACGCTGAGGCGTTTTTAATTTCTGCTTTTCAAAAA
77851478 TCAACTCATA
66 TCAACTCATA
*
77851488 TTGCGAGATGTGAGTTGAGCCTTGG
1 TTGCGAGAAGTGAGTTGAGCCTTGG
77851513 GTTCACATGT
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
75 38 0.42
77 45 0.50
78 6 0.07
79 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (75 bp):
TTGCGAGAAGTGAGTTGAGCCTTGGCTCACACGCTGAGGCGTTTTTAATTTCTGCTTTTCAAAAA
TCAACTCATA
Found at i:77852114 original size:30 final size:30
Alignment explanation
Indices: 77852078--77852282 Score: 302
Period size: 30 Copynumber: 6.8 Consensus size: 30
77852068 AAACCCAATT
77852078 TAGCCACACCTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
* *
77852108 TAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACAC-CTTTTCCACCACCAACTCCAC
*
77852139 TAGCCACACCTTGTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
* *
77852169 TAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACAC-CTTTTCCACCACCAACTCCAC
*
77852200 TAGCCACACCTTGTCCACCACCAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
* * *
77852230 TAGCCACTCTTTTTCCACCACTAACTCCAC
1 TAGCCACACCTTTTCCACCACCAACTCCAC
*
77852260 TAGCCACACCTTCTCCACCACCA
1 TAGCCACACCTTTTCCACCACCA
77852283 CTTGTACCTA
Statistics
Matches: 154, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
30 99 0.64
31 55 0.36
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (30 bp):
TAGCCACACCTTTTCCACCACCAACTCCAC
Found at i:77852156 original size:61 final size:61
Alignment explanation
Indices: 77852078--77852282 Score: 376
Period size: 61 Copynumber: 3.4 Consensus size: 61
77852068 AAACCCAATT
*
77852078 TAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTGTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
77852139 TAGCCACACCTTGTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
1 TAGCCACACCTTGTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
*
77852200 TAGCCACACCTTGTCCACCACCAACTCCACTAGCCACTC-TTTTTCCACCACTAACTCCAC
1 TAGCCACACCTTGTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
*
77852260 TAGCCACACCTTCTCCACCACCA
1 TAGCCACACCTTGTCCACCACCA
77852283 CTTGTACCTA
Statistics
Matches: 141, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
60 42 0.30
61 99 0.70
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (61 bp):
TAGCCACACCTTGTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCAC
Found at i:77852233 original size:91 final size:92
Alignment explanation
Indices: 77852088--77852266 Score: 288
Period size: 91 Copynumber: 2.0 Consensus size: 92
77852078 TAGCCACACC
* * *
77852088 TTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCACTAGCCACACCTTGT
1 TTTTCCACCACCAACTCCACTAGCCACACTCTTGTCCACCACCAACTCCACTAGCCACACCTTGT
77852153 CCACCACCAACTCCACTAGCCACTCTT
66 CCACCACCAACTCCACTAGCCACTCTT
* * *
77852180 TTTTCCACCACCAACTCCACTAGCCACAC-CTTGTCCACCACCAACTCCACTAGCCACTCTTTTT
1 TTTTCCACCACCAACTCCACTAGCCACACTCTTGTCCACCACCAACTCCACTAGCCACACCTTGT
*
77852244 CCACCACTAACTCCACTAGCCAC
66 CCACCACCAACTCCACTAGCCAC
77852267 ACCTTCTCCA
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
91 52 0.65
92 28 0.35
ACGTcount: A:0.25, C:0.47, G:0.04, T:0.24
Consensus pattern (92 bp):
TTTTCCACCACCAACTCCACTAGCCACACTCTTGTCCACCACCAACTCCACTAGCCACACCTTGT
CCACCACCAACTCCACTAGCCACTCTT
Found at i:77852892 original size:25 final size:25
Alignment explanation
Indices: 77852864--77853019 Score: 84
Period size: 25 Copynumber: 6.1 Consensus size: 25
77852854 ATATTACGTA
* *
77852864 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
77852889 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
* * ** *
77852914 TATATTTTTTTTCTAC-ATGTTATCT
1 TATATATATTTAATACTATATTAT-T
*
77852939 TATGTATATATCTT-A-ACTATATTATG
1 TA--TATATAT-TTAATACTATATTATT
* * * *
77852965 TATGTATTTTTAACACTATATTATG
1 TATATATATTTAATACTATATTATT
* * *
77852990 TACATATTTTTAATATTATCATGTATT
1 TATATATATTTAATACTAT-AT-TATT
77853017 TAT
1 TAT
77853020 TTTTTATATA
Statistics
Matches: 99, Mismatches: 23, Indels: 16
0.72 0.17 0.12
Matches are distributed among these distances:
23 2 0.02
24 12 0.12
25 61 0.62
26 6 0.06
27 16 0.16
28 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:77853020 original size:23 final size:24
Alignment explanation
Indices: 77852940--77853030 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
77852930 ATGTTATCTT
*
77852940 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
77852962 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
77852987 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
77853010 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
77853031 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:77853177 original size:16 final size:15
Alignment explanation
Indices: 77853153--77853200 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
77853143 TAATTATTAT
*
77853153 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
77853169 TATTTTAATATTTTA
1 TATTTTAATATTTTA
77853184 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
77853200 T
1 T
77853201 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:77853188 original size:7 final size:8
Alignment explanation
Indices: 77853153--77853204 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
77853143 TAATTATTAT
*
77853153 TATTCTAA
1 TATTTTAA
*
77853161 TATTTTGA
1 TATTTTAA
77853169 TATTTTAA
1 TATTTTAA
77853177 TATTTT-A
1 TATTTTAA
77853184 TATTTTATA
1 TATTTTA-A
*
77853193 TATTTTAT
1 TATTTTAA
77853201 TATT
1 TATT
77853205 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:77856984 original size:21 final size:22
Alignment explanation
Indices: 77856958--77856999 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
77856948 AAAATTTTAT
*
77856958 AAAAATATTAAA-ATTTATGAA
1 AAAAATATTAAATATATATGAA
77856979 AAAAATATTAAATATATATGA
1 AAAAATATTAAATATATATGA
77857000 TAAATATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
AAAAATATTAAATATATATGAA
Found at i:77862250 original size:31 final size:30
Alignment explanation
Indices: 77862215--77862312 Score: 80
Period size: 31 Copynumber: 3.3 Consensus size: 30
77862205 GAACATTTGC
77862215 CAAGTTCAGGCCCCAATATGAGAACAATTAT
1 CAAGTTCAGGCCCCAAT-TGAGAACAATTAT
** *
77862246 CAAGTTCAGGGACTAACTTG-GAA-AA--A-
1 CAAGTTCAGGCCCCAA-TTGAGAACAATTAT
* * *
77862272 AAAGTTCAAGCCTCAATGTGAGAACAATTAT
1 CAAGTTCAGGCCCCAAT-TGAGAACAATTAT
77862303 CAAGTTCAGG
1 CAAGTTCAGG
77862313 AACTAACTTG
Statistics
Matches: 49, Mismatches: 11, Indels: 14
0.66 0.15 0.19
Matches are distributed among these distances:
25 1 0.02
26 12 0.24
27 4 0.08
28 2 0.04
29 2 0.04
30 4 0.08
31 23 0.47
32 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (30 bp):
CAAGTTCAGGCCCCAATTGAGAACAATTAT
Found at i:77862294 original size:57 final size:58
Alignment explanation
Indices: 77862216--77862357 Score: 180
Period size: 57 Copynumber: 2.4 Consensus size: 58
77862206 AACATTTGCC
* * * * *
77862216 AAGTTCAGGCCCCAATATGAGAACAATTATCAAGTTCAGGGACTAACTTG-GAAAAAA
1 AAGTTCAAGCCTCAATGTGAGAACAATTATCAAGTTCAGGAACTAACTTGAAAAAAAA
77862273 AAGTTCAAGCCTCAATGTGAGAACAATTATCAAGTTCAGGAACTAACTTGACCAAAAAAAAA
1 AAGTTCAAGCCTCAATGTGAGAACAATTATCAAGTTCAGGAACTAACTTG----AAAAAAAA
77862335 AAGTTC-AGACCTCAATGTGAGAA
1 AAGTTCAAG-CCTCAATGTGAGAA
77862358 TTATTGCTAA
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
57 46 0.62
61 2 0.03
62 26 0.35
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (58 bp):
AAGTTCAAGCCTCAATGTGAGAACAATTATCAAGTTCAGGAACTAACTTGAAAAAAAA
Found at i:77863605 original size:27 final size:27
Alignment explanation
Indices: 77863575--77863627 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
77863565 TCTAGTAATT
77863575 TATCTATATTGTAATAAAATACTAGTA
1 TATCTATATTGTAATAAAATACTAGTA
77863602 TATCTATATTGTAATAAAATACTAGT
1 TATCTATATTGTAATAAAATACTAGT
77863628 TTGATCAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (27 bp):
TATCTATATTGTAATAAAATACTAGTA
Found at i:77880863 original size:16 final size:16
Alignment explanation
Indices: 77880839--77880870 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77880829 AATAATCCTA
*
77880839 CTTTGAAAAATCTTTT
1 CTTTAAAAAATCTTTT
77880855 CTTTAAAAAATCTTTT
1 CTTTAAAAAATCTTTT
77880871 GGTATAAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.50
Consensus pattern (16 bp):
CTTTAAAAAATCTTTT
Found at i:77884634 original size:27 final size:23
Alignment explanation
Indices: 77884580--77884663 Score: 114
Period size: 23 Copynumber: 3.7 Consensus size: 23
77884570 ATACACAGAT
*
77884580 TCCAACCAAACACACTGAAATAA
1 TCCAACCAAACACACTAAAATAA
77884603 TCCAACCAAACACACTAAAATAA
1 TCCAACCAAACACACTAAAATAA
* * * *
77884626 TCCACCCAAACACACCAGAACAA
1 TCCAACCAAACACACTAAAATAA
*
77884649 TCCACCCAAACACAC
1 TCCAACCAAACACAC
77884664 CAGAATGGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.50, C:0.38, G:0.02, T:0.10
Consensus pattern (23 bp):
TCCAACCAAACACACTAAAATAA
Found at i:77885672 original size:16 final size:16
Alignment explanation
Indices: 77885653--77885685 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
77885643 GAATAGTCTC
*
77885653 TGTTTCTTTTCTTCTT
1 TGTTTCTTTTATTCTT
77885669 TGTTTCTTTTATTCTT
1 TGTTTCTTTTATTCTT
77885685 T
1 T
77885686 TACTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTTATTCTT
Found at i:77890941 original size:6 final size:6
Alignment explanation
Indices: 77890930--77891016 Score: 120
Period size: 6 Copynumber: 14.5 Consensus size: 6
77890920 GTTGTGGGTC
* * * *
77890930 GAGCCT GAGCCT GAGCCT GAGCTT GAGCTT GAGCTT GAGCCT GAGCTT
1 GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT
* *
77890978 GAGCCT GAGCTT GAGCCT GAGCAT GAGCCT GAGCCT GAG
1 GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAG
77891017 TCGAGCTTGC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 73 1.00
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.22
Consensus pattern (6 bp):
GAGCCT
Found at i:77890947 original size:12 final size:12
Alignment explanation
Indices: 77890930--77891025 Score: 140
Period size: 12 Copynumber: 8.1 Consensus size: 12
77890920 GTTGTGGGTC
*
77890930 GAGCCTGAGCCT
1 GAGCCTGAGCTT
77890942 GAGCCTGAGCTT
1 GAGCCTGAGCTT
*
77890954 GAGCTTGAGCTT
1 GAGCCTGAGCTT
77890966 GAGCCTGAGCTT
1 GAGCCTGAGCTT
77890978 GAGCCTGAGCTT
1 GAGCCTGAGCTT
*
77890990 GAGCCTGAGCAT
1 GAGCCTGAGCTT
*
77891002 GAGCCTGAGCCT
1 GAGCCTGAGCTT
*
77891014 GAGTC-GAGCTT
1 GAGCCTGAGCTT
77891025 G
1 G
77891026 CATAGCCCAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
11 6 0.08
12 71 0.92
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (12 bp):
GAGCCTGAGCTT
Found at i:77894092 original size:37 final size:37
Alignment explanation
Indices: 77893984--77894094 Score: 204
Period size: 37 Copynumber: 3.0 Consensus size: 37
77893974 ATATAGTTAA
**
77893984 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCAAT
1 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
77894021 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
1 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
77894058 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
1 ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
77894095 CCATGTAAAC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.46
Consensus pattern (37 bp):
ATAATTTTGTACTTCGTCTTCTAGTTAAATAATCGGT
Found at i:77895563 original size:24 final size:24
Alignment explanation
Indices: 77895533--77895600 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 24
77895523 AAACAAGTTA
77895533 ATATATATTTTAATATTTATAT-T
1 ATATATATTTTAATATTTATATAT
*
77895556 ATAGTATA-TTTAATTTTTCATATGAT
1 ATA-TATATTTTAATATTT-ATAT-AT
77895582 ATATATATTTATAA-ATTTA
1 ATATATATTT-TAATATTTA
77895601 AAAATAGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
23 12 0.32
24 8 0.22
25 5 0.14
26 9 0.24
27 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (24 bp):
ATATATATTTTAATATTTATATAT
Found at i:77901243 original size:36 final size:34
Alignment explanation
Indices: 77901202--77901275 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
77901192 AATGAAATTC
*
77901202 TAAATTATTAAATTAATAATTTATTTTAATTATACT
1 TAAATTATTAAATTAATAATTT-TTCTAATTA-ACT
* *
77901238 T-AA--ATTAAATTATTAATTTTTCTATTTAACT
1 TAAATTATTAAATTAATAATTTTTCTAATTAACT
77901269 TAAATTA
1 TAAATTA
77901276 AATAATAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
31 4 0.12
32 9 0.28
33 15 0.47
34 1 0.03
35 2 0.06
36 1 0.03
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (34 bp):
TAAATTATTAAATTAATAATTTTTCTAATTAACT
Found at i:77901273 original size:31 final size:33
Alignment explanation
Indices: 77901208--77901315 Score: 118
Period size: 31 Copynumber: 3.4 Consensus size: 33
77901198 ATTCTAAATT
*
77901208 ATTAAATTAATAATTTATTTTAATTATACTTAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
* *
77901241 ATTAAATTATTAATTT-TTCTATTTA-ACTTAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
** *
77901272 ATTAAA-TAATAATAAATTCTAAATATAC-TAA
1 ATTAAATTAATAATTTATTCTAATTATACTTAA
77901303 ATATAAA-TAATAA
1 AT-TAAATTAATAA
77901316 CTAAATAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
30 6 0.09
31 24 0.38
32 19 0.30
33 15 0.23
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (33 bp):
ATTAAATTAATAATTTATTCTAATTATACTTAA
Found at i:77901289 original size:15 final size:14
Alignment explanation
Indices: 77901269--77901394 Score: 78
Period size: 15 Copynumber: 8.5 Consensus size: 14
77901259 CTATTTAACT
77901269 TAAATTAAATAATAA
1 TAAA-TAAATAATAA
*
77901284 TAAATTCTAAAT-ATAC
1 TAAA---TAAATAATAA
*
77901300 TAAATATA-AATAA
1 TAAATAAATAATAA
*
77901313 TAACTAAATAATAA
1 TAAATAAATAATAA
77901327 CTAAATAGAAATAATAA
1 -TAAAT--AAATAATAA
* *
77901344 TATATATAATACTAA
1 TAAATA-AATAATAA
*
77901359 TATATAAA-AATAA
1 TAAATAAATAATAA
*
77901372 TATATAAATAGATAA
1 TAAATAAATA-ATAA
77901387 TATAATAA
1 TA-AATAA
77901395 TAGATAGAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
13 24 0.27
14 9 0.10
15 27 0.30
16 15 0.17
17 14 0.16
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (14 bp):
TAAATAAATAATAA
Found at i:77901322 original size:11 final size:11
Alignment explanation
Indices: 77901306--77901333 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
77901296 ATACTAAATA
77901306 TAAATAATAAC
1 TAAATAATAAC
77901317 TAAATAATAAC
1 TAAATAATAAC
77901328 TAAATA
1 TAAATA
77901334 GAAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAATAATAAC
Found at i:77901339 original size:43 final size:39
Alignment explanation
Indices: 77901274--77901358 Score: 91
Period size: 43 Copynumber: 2.1 Consensus size: 39
77901264 TAACTTAAAT
**
77901274 TAAATAATAATAAATTCTAAATATACTAAATATAAATAATAAC
1 TAAATAATAATAAATTAGAAATA-A-T-AATATAAATAAT-AC
*
77901317 TAAATAATAACTAAA-TAGAAATAATAATATATATAATAC
1 TAAATAATAA-TAAATTAGAAATAATAATATAAATAATAC
77901356 TAA
1 TAA
77901359 TATATAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
39 5 0.13
40 11 0.29
41 1 0.03
42 1 0.03
43 16 0.42
44 4 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.32
Consensus pattern (39 bp):
TAAATAATAATAAATTAGAAATAATAATATAAATAATAC
Found at i:77901343 original size:63 final size:64
Alignment explanation
Indices: 77901276--77901416 Score: 132
Period size: 66 Copynumber: 2.2 Consensus size: 64
77901266 ACTTAAATTA
* * * *
77901276 AATAATAATAAATTCTAA-ATATACTAAAT-ATAAAT-AATA-ACTAA-ATAATAACTAAATAGA
1 AATAATAATAAATACTAATATATA-AAAATAATAAATAAATAGA-TAATATAA-TAATAAATAG-
77901336 AAT
62 AAT
* *
77901339 AATAATATATATAATACTAATATATAAAAATAATATATAAATAGATAATATAATAATAGATAGAA
1 AATAATA-ATA-AATACTAATATATAAAAATAATAAATAAATAGATAATATAATAATAAATAGAA
77901404 T
64 T
77901405 AATAA-AATAAAT
1 AATAATAATAAAT
77901417 GATATAGAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
63 10 0.15
64 6 0.09
65 12 0.18
66 18 0.28
67 14 0.22
68 5 0.08
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (64 bp):
AATAATAATAAATACTAATATATAAAAATAATAAATAAATAGATAATATAATAATAAATAGAAT
Found at i:77901372 original size:28 final size:28
Alignment explanation
Indices: 77901296--77901381 Score: 108
Period size: 28 Copynumber: 3.1 Consensus size: 28
77901286 AATTCTAAAT
77901296 ATACTAAATATAAATAATAACTA-A-ATA
1 ATACTAAATATAAATAATAA-TATATATA
*
77901323 ATAACTAAATAGAAATAATAATATATATA
1 AT-ACTAAATATAAATAATAATATATATA
77901352 ATACTAATATATAAA-AATAATATATA-A
1 ATACTAA-ATATAAATAATAATATATATA
77901379 ATA
1 ATA
77901382 GATAATATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
27 8 0.15
28 34 0.64
29 11 0.21
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (28 bp):
ATACTAAATATAAATAATAATATATATA
Found at i:77901386 original size:8 final size:7
Alignment explanation
Indices: 77901279--77901396 Score: 55
Period size: 7 Copynumber: 16.0 Consensus size: 7
77901269 TAAATTAAAT
77901279 AATAATA
1 AATAATA
**
77901286 AATTCTA
1 AATAATA
77901293 AATATACTA
1 AATA-A-TA
77901302 AAT-ATA
1 AATAATA
77901308 AATAATA
1 AATAATA
*
77901315 ACTAA-A
1 AATAATA
77901321 TAATAACTA
1 -AATAA-TA
*
77901330 AAT-AGA
1 AATAATA
77901336 AATAATA
1 AATAATA
77901343 ATATATATA
1 A-ATA-ATA
77901352 ATACTAATA
1 A-A-TAATA
*
77901361 TATAA-A
1 AATAATA
77901367 AATAATA
1 AATAATA
*
77901374 TATAAATA
1 AAT-AATA
*
77901382 GATAATA
1 AATAATA
77901389 TAATAATA
1 -AATAATA
77901397 GATAGAATAA
Statistics
Matches: 85, Mismatches: 13, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
6 15 0.18
7 34 0.40
8 19 0.22
9 15 0.18
10 2 0.02
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:77901393 original size:20 final size:20
Alignment explanation
Indices: 77901368--77901477 Score: 68
Period size: 20 Copynumber: 5.5 Consensus size: 20
77901358 ATATATAAAA
77901368 ATAATATATAAATAGATAAT
1 ATAATATATAAATAGATAAT
*
77901388 ATAATA-ATAGATAGAATAAT
1 ATAATATATAAATAG-ATAAT
* * *
77901408 AAAATAAATGATATAGA-AAT
1 ATAATATAT-AAATAGATAAT
*
77901428 ATAGATTTATAAATCA-A-AAT
1 ATA-ATATATAAAT-AGATAAT
* *
77901448 ATATTAATATAAATATAATAAT
1 ATAAT-ATATAAATA-GATAAT
77901470 ATAA-ATAT
1 ATAATATAT
77901478 TATTAATTAC
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
19 9 0.13
20 42 0.59
21 9 0.13
22 11 0.15
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (20 bp):
ATAATATATAAATAGATAAT
Found at i:77901396 original size:15 final size:14
Alignment explanation
Indices: 77901308--77901414 Score: 75
Period size: 15 Copynumber: 7.6 Consensus size: 14
77901298 ACTAAATATA
77901308 AATAATAACTA-AAT
1 AATAATAA-TATAAT
77901322 AATAACTAA-ATAGA-
1 AATAA-TAATATA-AT
77901336 AATAATAATATATAT
1 AATAATAATATA-AT
*
77901351 AATACTAATAT-AT
1 AATAATAATATAAT
*
77901364 AAAAATAATAT-AT
1 AATAATAATATAAT
77901377 AAATAGATAATATAAT
1 -AATA-ATAATATAAT
77901393 AATAGATAGA-ATAAT
1 AATA-ATA-ATATAAT
77901408 AA-AATAA
1 AATAATAA
77901415 ATGATATAGA
Statistics
Matches: 79, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
12 1 0.01
13 20 0.25
14 19 0.24
15 36 0.46
16 3 0.04
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (14 bp):
AATAATAATATAAT
Found at i:77901463 original size:14 final size:14
Alignment explanation
Indices: 77901444--77901484 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
77901434 TTATAAATCA
77901444 AAATATATTAATAT
1 AAATATATTAATAT
*
77901458 AAATATAATAATAT
1 AAATATATTAATAT
77901472 AAATATTATTAAT
1 AAATA-TATTAAT
77901485 TACTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:77909393 original size:40 final size:39
Alignment explanation
Indices: 77909204--77909382 Score: 288
Period size: 39 Copynumber: 4.5 Consensus size: 39
77909194 TAATGGAGAA
77909204 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
77909243 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
77909282 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
77909321 TTATGTCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
77909360 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
77909383 CATGCTTTGT
Statistics
Matches: 133, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 111 0.83
40 22 0.17
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Done.