Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 239 of 320
Found at i:78656504 original size:44 final size:44
Alignment explanation
Indices: 78656456--78656605 Score: 135
Period size: 44 Copynumber: 3.4 Consensus size: 44
78656446 CCAGAAATCC
*
78656456 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATGAGGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATGAAGGATCT
* * * ** ** *
78656500 TATCTTCCTG-AGATTACAGCGGAGCAGA-TCGAA-GACACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCGGATTAAAATGA-AGGATCT
* * *
78656543 TATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATGAAGGATCT
* *
78656587 TATCTCTCTGAGGTTACAG
1 TATCTCCCTGAAGTTACAG
78656606 CAGAGTAGGT
Statistics
Matches: 79, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
42 2 0.03
43 28 0.35
44 48 0.61
45 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATGAAGGATCT
Found at i:78663347 original size:16 final size:16
Alignment explanation
Indices: 78663328--78663379 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 16
78663318 TGACATACAT
* *
78663328 TAATTTTAATTTTGTG
1 TAATTTTAATTATATG
78663344 TAATTTT-A-TATATG
1 TAATTTTAATTATATG
*
78663358 TAATTTTAATTA-ATT
1 TAATTTTAATTATATG
78663373 TAATTTT
1 TAATTTT
78663380 TACAAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 11 0.35
15 11 0.35
16 9 0.29
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (16 bp):
TAATTTTAATTATATG
Found at i:78667273 original size:31 final size:31
Alignment explanation
Indices: 78667220--78667306 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 31
78667210 TTAAAACCCC
* * *
78667220 AATGTGGGAATAATTATCAAGTTTAATAT-CT
1 AATGTGGGAACAATTGTCAAGTTCAA-ATCCT
*
78667251 AATGTGGGAACAATTGTTAAGTTCAAATCCT
1 AATGTGGGAACAATTGTCAAGTTCAAATCCT
* * *
78667282 AATATTGGAACAATTGTCAAATTCA
1 AATGTGGGAACAATTGTCAAGTTCA
78667307 TGTACTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 2 0.04
31 45 0.96
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (31 bp):
AATGTGGGAACAATTGTCAAGTTCAAATCCT
Found at i:78680226 original size:80 final size:81
Alignment explanation
Indices: 78680080--78680240 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 81
78680070 TGGATTTTCC
*
78680080 GGTTTGTACCGCAATCTTTCAGATTGAATTATCTTAGCTGGTTGTGCTCTGTCAAAATGGAGCTT
1 GGTTTGTACCGCAATCTTTCACATTGAATTATCTTAGCTGGTTGTGCTCTGTCAAAATGGAGCTT
78680145 AAAAACTAAATTACCA
66 AAAAACTAAATTACCA
78680161 GGTTTGTACCGCAATCTTTCACATTGAATTATC-TAGCTGGTTGTGCTCTGTCAAAATGGAGCTT
1 GGTTTGTACCGCAATCTTTCACATTGAATTATCTTAGCTGGTTGTGCTCTGTCAAAATGGAGCTT
78680225 AAAAACTAAATTACCA
66 AAAAACTAAATTACCA
78680241 TGTATGGCTT
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
80 47 0.59
81 32 0.41
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (81 bp):
GGTTTGTACCGCAATCTTTCACATTGAATTATCTTAGCTGGTTGTGCTCTGTCAAAATGGAGCTT
AAAAACTAAATTACCA
Found at i:78681523 original size:26 final size:26
Alignment explanation
Indices: 78681494--78681601 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
78681484 TGGTACAAAT
78681494 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
78681520 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
78681546 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
78681572 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
78681598 TGAT
1 TGAT
78681602 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:78684874 original size:25 final size:25
Alignment explanation
Indices: 78684858--78684974 Score: 87
Period size: 25 Copynumber: 4.7 Consensus size: 25
78684848 GCTGTATATT
78684858 GGGAAGCTCATAAGAGCCATAAATC
1 GGGAAGCTCATAAGAGCCATAAATC
* * *
78684883 GGGAAGCTCATGAGAGCCA-ATTATT
1 GGGAAGCTCATAAGAGCCATA-AATC
* * *
78684908 GAGAAGCTCA-AGAGAGTCATTAATC
1 GGGAAGCTCATA-AGAGCCATAAATC
* * * *
78684933 AGTAAGCTCACAAAAGCCA-AATATC
1 GGGAAGCTCATAAGAGCCATAA-ATC
*
78684958 GGGATGCTCATAAGAGC
1 GGGAAGCTCATAAGAGC
78684975 TATGGTATAT
Statistics
Matches: 67, Mismatches: 20, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
24 2 0.03
25 64 0.96
26 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (25 bp):
GGGAAGCTCATAAGAGCCATAAATC
Found at i:78684908 original size:50 final size:50
Alignment explanation
Indices: 78684853--78684974 Score: 129
Period size: 50 Copynumber: 2.4 Consensus size: 50
78684843 ATCGAGCTGT
* ** *
78684853 ATATTGGGAAGCTCATAAGAGCCATAAATCGGGAAGCTCATGAGAGCCAA
1 ATATTGGGAAGCTCATAAGAGCCATAAATCAGGAAGCTCACAAAAGCCAA
* * * * *
78684903 TTATTGAGAAGCTCA-AGAGAGTCATTAATCAGTAAGCTCACAAAAGCCAA
1 ATATTGGGAAGCTCATA-AGAGCCATAAATCAGGAAGCTCACAAAAGCCAA
* *
78684953 ATATCGGGATGCTCATAAGAGC
1 ATATTGGGAAGCTCATAAGAGC
78684975 TATGGTATAT
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
49 1 0.02
50 54 0.96
51 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (50 bp):
ATATTGGGAAGCTCATAAGAGCCATAAATCAGGAAGCTCACAAAAGCCAA
Found at i:78686643 original size:36 final size:36
Alignment explanation
Indices: 78686603--78686676 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
78686593 GAGAATTAAG
78686603 TAAGAAAATATTCGAATGAACTAATGAGAGACATAA
1 TAAGAAAATATTCGAATGAACTAATGAGAGACATAA
*
78686639 TAAGAAAATATTCGAATGAACTAATGAGATACATAA
1 TAAGAAAATATTCGAATGAACTAATGAGAGACATAA
78686675 TA
1 TA
78686677 CCCAGGAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (36 bp):
TAAGAAAATATTCGAATGAACTAATGAGAGACATAA
Found at i:78686826 original size:24 final size:24
Alignment explanation
Indices: 78686799--78686848 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
78686789 GAGTAAAAAT
*
78686799 AACTAACTCTAGGCTGATTAATTG
1 AACTAACTCCAGGCTGATTAATTG
*
78686823 AACTAACTCCAGGTTGATTAATTG
1 AACTAACTCCAGGCTGATTAATTG
78686847 AA
1 AA
78686849 ATCTCTTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (24 bp):
AACTAACTCCAGGCTGATTAATTG
Found at i:78689884 original size:10 final size:10
Alignment explanation
Indices: 78689865--78689911 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
78689855 TTCTCAATTT
78689865 ATCA-ACCAA
1 ATCATACCAA
78689874 ATCATACCAA
1 ATCATACCAA
*
78689884 ATCTAAACCAAA
1 ATC-ATACC-AA
78689896 ATCATACCAA
1 ATCATACCAA
*
78689906 AGCATA
1 ATCATA
78689912 TGTTTCAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 8 0.25
12 5 0.16
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:78690696 original size:42 final size:44
Alignment explanation
Indices: 78690650--78690747 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 44
78690640 TCCCGAATAG
78690650 GGTCTTACAC-AAAA-TCA-AATACGATGCCAACGTCCCAAACGT
1 GGTCTTACACGAAAACT-ATAATACGATGCCAACGTCCCAAACGT
* * * **
78690692 GGTCTTACACGTAAACTATAATTCGATGCCAACGTGCCAGGCGT
1 GGTCTTACACGAAAACTATAATACGATGCCAACGTCCCAAACGT
78690736 GGTCTTACACGA
1 GGTCTTACACGA
78690748 TAACATATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 10 0.21
43 4 0.09
44 33 0.70
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (44 bp):
GGTCTTACACGAAAACTATAATACGATGCCAACGTCCCAAACGT
Found at i:78692324 original size:7 final size:7
Alignment explanation
Indices: 78692312--78692360 Score: 80
Period size: 7 Copynumber: 6.9 Consensus size: 7
78692302 AGCAACTGGT
78692312 ACCCTAA
1 ACCCTAA
78692319 ACCCTAA
1 ACCCTAA
*
78692326 ACTCTAA
1 ACCCTAA
78692333 ACCCTAAA
1 ACCCT-AA
78692341 ACCCTAA
1 ACCCTAA
78692348 ACCCTAA
1 ACCCTAA
78692355 ACCCTA
1 ACCCTA
78692361 CGCTAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (7 bp):
ACCCTAA
Found at i:78692345 original size:22 final size:22
Alignment explanation
Indices: 78692312--78692360 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
78692302 AGCAACTGGT
*
78692312 ACCCTAAACCCTAAACTCT-AA
1 ACCCTAAACCCTAAACCCTAAA
78692333 ACCCTAAAACCCTAAACCCT-AA
1 ACCCT-AAACCCTAAACCCTAAA
78692355 ACCCTA
1 ACCCTA
78692361 CGCTAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (22 bp):
ACCCTAAACCCTAAACCCTAAA
Found at i:78698241 original size:42 final size:42
Alignment explanation
Indices: 78698133--78698292 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 42
78698123 AATTCGTAAA
* * * *
78698133 ATGCCAACATCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATAT-G
78698176 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATG
* *
78698218 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCA-AA-TATG
* *
78698262 ATGCCAACGTCTCAGACGTGATCTTACACGA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA
78698293 TAACACATAT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 41 0.41
44 31 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATG
Found at i:78698278 original size:86 final size:85
Alignment explanation
Indices: 78698133--78698292 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
78698123 AATTCGTAAA
* * *
78698133 ATGCCAACATCTCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAC-GTGA
78698197 TCTTACACGAAATCAAATATG
65 TCTTACACGAAATCAAATATG
* * * *
78698218 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCTCAGACGT
1 ATGCCAACATCCCAGACGTGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGACGT
78698281 GATCTTACACGA
63 GATCTTACACGA
78698293 TAACACATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 28 0.44
86 32 0.50
87 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACGTGAT
CTTACACGAAATCAAATATG
Found at i:78700028 original size:26 final size:26
Alignment explanation
Indices: 78699994--78700047 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
78699984 GAAAAAGCTA
78699994 AAATGTTAGTAAAGAAAAATAAAAAC
1 AAATGTTAGTAAAGAAAAATAAAAAC
78700020 AAATGTTAGTAAAGAAAAATAAAAAC
1 AAATGTTAGTAAAGAAAAATAAAAAC
78700046 AA
1 AA
78700048 CTATAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.19
Consensus pattern (26 bp):
AAATGTTAGTAAAGAAAAATAAAAAC
Found at i:78703501 original size:20 final size:20
Alignment explanation
Indices: 78703454--78703501 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
78703444 CTACTAGTGT
78703454 AGTTAATTAGACTTTGATTA
1 AGTTAATTAGACTTTGATTA
*
78703474 AGTGAATTAG-C-TTGAATTA
1 AGTTAATTAGACTTTG-ATTA
78703493 AGGTTAATT
1 A-GTTAATT
78703502 TAGTAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 15 0.62
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (20 bp):
AGTTAATTAGACTTTGATTA
Found at i:78703738 original size:13 final size:14
Alignment explanation
Indices: 78703696--78703740 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
78703686 ATAATAATAT
78703696 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
78703711 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
78703724 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
78703737 TAAA
1 TAAA
78703741 ATAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:78703812 original size:21 final size:21
Alignment explanation
Indices: 78703786--78703827 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
78703776 ACAGAAAGAA
78703786 AGAAAAAGAAAACTTAGGGTT
1 AGAAAAAGAAAACTTAGGGTT
78703807 AGAAAAAGAAAACTTAGGGTT
1 AGAAAAAGAAAACTTAGGGTT
78703828 TTGGAGTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.24, T:0.19
Consensus pattern (21 bp):
AGAAAAAGAAAACTTAGGGTT
Found at i:78706887 original size:37 final size:37
Alignment explanation
Indices: 78706828--78706973 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
78706818 AGCTCAGACG
* * *
78706828 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78706865 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* **
78706902 TAATCTGTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78706939 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
78706974 ATATATTTCC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78707174 original size:48 final size:48
Alignment explanation
Indices: 78707120--78707254 Score: 261
Period size: 48 Copynumber: 2.8 Consensus size: 48
78707110 GCACATCGCC
*
78707120 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
78707168 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
78707216 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
78707255 TGCATGTTCA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:78707303 original size:47 final size:47
Alignment explanation
Indices: 78707224--78707417 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
78707214 CATACATATT
* * *
78707224 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
78707271 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
78707318 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
78707365 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
78707412 TCACAT
1 TCACAT
78707418 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:78707344 original size:22 final size:22
Alignment explanation
Indices: 78707317--78707388 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
78707307 GCTCACATTC
78707317 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
78707339 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
78707363 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
78707386 ATC
1 ATC
78707389 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:78707348 original size:94 final size:94
Alignment explanation
Indices: 78707177--78707417 Score: 299
Period size: 94 Copynumber: 2.6 Consensus size: 94
78707167 ATACATATTT
* * * *
78707177 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
*
78707239 GGCTTTACCACATATATGCATGTTCACATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
78707272 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
78707337 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
78707366 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
78707418 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:78721429 original size:16 final size:16
Alignment explanation
Indices: 78721408--78721442 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
78721398 AAATATGTCT
78721408 TAATTCAATGTTGTAC
1 TAATTCAATGTTGTAC
*
78721424 TAATTCAATGTTGTTC
1 TAATTCAATGTTGTAC
78721440 TAA
1 TAA
78721443 CATATTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (16 bp):
TAATTCAATGTTGTAC
Found at i:78726902 original size:20 final size:18
Alignment explanation
Indices: 78726867--78726905 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
78726857 TTATAAAAAC
*
78726867 TATTTTTTATTTTATTTT
1 TATTTTTTATTATATTTT
78726885 TATTTTTTATATGATATTTT
1 TATTTTTTAT-T-ATATTTT
78726905 T
1 T
78726906 TAAAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (18 bp):
TATTTTTTATTATATTTT
Found at i:78727029 original size:28 final size:26
Alignment explanation
Indices: 78726990--78727067 Score: 93
Period size: 28 Copynumber: 2.9 Consensus size: 26
78726980 CAGTAATTGG
78726990 TTTGATCAACTAATTTTATTAATTAA
1 TTTGATCAACTAATTTTATTAATTAA
* *
78727016 TTTTTGATCAACTAGTTTTATTAACTAA
1 --TTTGATCAACTAATTTTATTAATTAA
* * *
78727044 TTTGATCAAATGATTCTATTAATT
1 TTTGATCAACTAATTTTATTAATT
78727068 GTTTAGCTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 19 0.44
28 24 0.56
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (26 bp):
TTTGATCAACTAATTTTATTAATTAA
Found at i:78729345 original size:19 final size:20
Alignment explanation
Indices: 78729318--78729355 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78729308 AAATCAAAAC
78729318 AAAAATTT-ATTAATTTTAT
1 AAAAATTTAATTAATTTTAT
* *
78729337 AAAATTTTAATTATTTTTA
1 AAAAATTTAATTAATTTTA
78729356 AATTAACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAAAATTTAATTAATTTTAT
Found at i:78734876 original size:9 final size:9
Alignment explanation
Indices: 78734863--78734912 Score: 64
Period size: 9 Copynumber: 5.6 Consensus size: 9
78734853 ATAAGTATAA
*
78734863 AATTAACCA
1 AATTAACCG
**
78734872 AATTAATTG
1 AATTAACCG
78734881 AATTAACCG
1 AATTAACCG
*
78734890 AATTACCCG
1 AATTAACCG
78734899 AATTAACCG
1 AATTAACCG
78734908 AATTA
1 AATTA
78734913 TTTGTATAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:78734943 original size:6 final size:6
Alignment explanation
Indices: 78734932--78734984 Score: 88
Period size: 6 Copynumber: 8.5 Consensus size: 6
78734922 AATTATATGT
78734932 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTAGA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT--A TTTTTA TTTTTA TTTTTA
78734982 TTT
1 TTT
78734985 ATTAAATTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 39 0.87
8 6 0.13
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:78734995 original size:38 final size:37
Alignment explanation
Indices: 78734932--78735007 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 37
78734922 AATTATATGT
** *
78734932 TTTTTATTTTTATTTTTATTTTTATTTTTAGATTTTTA
1 TTTTTATTTTTATTTTTATAATTATTTGTA-ATTTTTA
78734970 TTTTTATTTTTATTTATTA-AATTATTTGTAATTTTTA
1 TTTTTATTTTTATTT-TTATAATTATTTGTAATTTTTA
78735007 T
1 T
78735008 GATTGGGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 8 0.24
38 23 0.68
39 3 0.09
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (37 bp):
TTTTTATTTTTATTTTTATAATTATTTGTAATTTTTA
Found at i:78738363 original size:108 final size:108
Alignment explanation
Indices: 78738182--78738384 Score: 336
Period size: 108 Copynumber: 1.9 Consensus size: 108
78738172 AAAAAGCAAG
* * * *
78738182 AAACCTTGAAACTAGACAAAAACCCCTTGAAACAATAAGTTGTTCTGCCAAAAGAGGCGAATGAG
1 AAACCTTGAAACTAGACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAGAGGCAAATGAA
78738247 AACAGAGAAGAAGATGGAAAAAAGAGCTGAACAAAAAGTAAAA
66 AACAGAGAAGAAGATGGAAAAAAGAGCTGAACAAAAAGTAAAA
78738290 AAACCTTGAAACT-GAACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAGAGGCAAATGA
1 AAACCTTGAAACTAG-ACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAGAGGCAAATGA
* *
78738354 AAACCGAGAAGAAGATGGCAAAAAGAGCTGA
65 AAACAGAGAAGAAGATGGAAAAAAGAGCTGA
78738385 GTGAGGGTTT
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
107 1 0.01
108 87 0.99
ACGTcount: A:0.50, C:0.16, G:0.20, T:0.14
Consensus pattern (108 bp):
AAACCTTGAAACTAGACAAAAACCCCTTGAAACAATAAGATGTTCTACCAAAAGAGGCAAATGAA
AACAGAGAAGAAGATGGAAAAAAGAGCTGAACAAAAAGTAAAA
Found at i:78747299 original size:26 final size:26
Alignment explanation
Indices: 78747260--78747419 Score: 248
Period size: 26 Copynumber: 6.2 Consensus size: 26
78747250 TGGTACAAAT
78747260 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78747286 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78747312 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * * *
78747338 TGATAATTGTTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78747364 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78747390 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78747416 TGAT
1 TGAT
78747420 GGGCATTTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 120 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78747338 original size:52 final size:52
Alignment explanation
Indices: 78747260--78747419 Score: 275
Period size: 52 Copynumber: 3.1 Consensus size: 52
78747250 TGGTACAAAT
*
78747260 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
* * *
78747312 TGATAATAGGTTAGGTAAATGTTCCATGATAATTGTTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
*
78747364 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
78747416 TGAT
1 TGAT
78747420 GGGCATTTCA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 100 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATATTCCA
Found at i:78748134 original size:27 final size:27
Alignment explanation
Indices: 78748102--78748215 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 27
78748092 AGGAAGCGTC
*
78748102 CTGGTGGTTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
78748129 CTGGTGGCTCTGCCAC-ATATATCT-AT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
78748155 CCTGGTGGCTATGCCACAATTATCTGTT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* *
78748183 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
78748210 CTGGTG
1 CTGGTG
78748216 ACTTCGTCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
26 9 0.12
27 63 0.84
28 3 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:78748215 original size:54 final size:54
Alignment explanation
Indices: 78748100--78748203 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
78748090 GGAGGAAGCG
*
78748100 TCCTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
*
78748154 TCCTGGTGGCTATGCCACAATTATCTGTTCTGGTGGCTCTGCCACA-ATAT
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAT
78748204 TTGTATCTGG
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:78748228 original size:54 final size:54
Alignment explanation
Indices: 78748100--78748218 Score: 168
Period size: 54 Copynumber: 2.2 Consensus size: 54
78748090 GGAGGAAGCG
**
78748100 TCCTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGACTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* * * *
78748154 TCCTGGTGGCTATGCCACAATTATCTGTTCTGGTGGCTCTGCCACAATATTTGTA
1 TCCTGGTGACTATGCCACAATTATCTGATCTGGTGGCTCTGCCAC-ATATATCTA
78748209 T-CTGGTGACT
1 TCCTGGTGACT
78748219 TCGTCACAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 51 0.86
55 8 0.14
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
TCCTGGTGACTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:78749352 original size:112 final size:113
Alignment explanation
Indices: 78749145--78749404 Score: 425
Period size: 112 Copynumber: 2.3 Consensus size: 113
78749135 GTGTTACAAC
78749145 ACTAAACCACTAAACACTAACAATTTATATAACTTAATCTTAAATTACTAATAAAATAGCTATAA
1 ACTAAACCACTAAACACTAACAATTTATATAACTTAATCTTAAATTACTAATAAAATAGCTATAA
* *
78749210 AAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT-
66 AAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATA
* *
78749257 ACTAAACCACTAAACACTAACAATTTATGTAA-TCTAATCTTAAATTACTAATAAAATAGTTATA
1 ACTAAACCACTAAACACTAACAATTTATATAACT-TAATCTTAAATTACTAATAAAATAGCTATA
*
78749321 AAATTATTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATA
65 AAAATATTTTTTT-AAAATATATTACTAAAAAAATCACAATACACTAATA
*
78749371 CACTAAACTACTAAACACTAACAATTTATATAAC
1 -ACTAAACCACTAAACACTAACAATTTATATAAC
78749405 CAAATCAACT
Statistics
Matches: 136, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
111 1 0.01
112 72 0.53
113 33 0.24
115 30 0.22
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.33
Consensus pattern (113 bp):
ACTAAACCACTAAACACTAACAATTTATATAACTTAATCTTAAATTACTAATAAAATAGCTATAA
AAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATA
Found at i:78749437 original size:113 final size:111
Alignment explanation
Indices: 78749143--78749484 Score: 365
Period size: 112 Copynumber: 3.1 Consensus size: 111
78749133 GGGTGTTACA
** * *
78749143 ACACTAAACCACTAAACACTAACAATTTATATAACTTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAA-CACTAAACACTAACAATTTATATAACCAAATC-T-AACTACTAATAAAATAGTTAT
* *
78749208 AAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT
63 AAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAAT
* * * *
78749257 --ACTAAACCACTAAACACTAACAATTTATGTAATCTAATCTTAAATTACTAATAAAATAGTTAT
1 ACACTAAA-CACTAAACACTAACAATTTATATAACCAAATC-T-AACTACTAATAAAATAGTTAT
*
78749320 AAAATTATTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAAT
63 AAAAATATTTTTTT-AAAATATATTACTAAAAAAATCACAATACACTAAT
78749370 ACACTAAACTACTAAACACTAACAATTTATATAACCAAATC--A--ACT-AT-AAA-A-TTAT--
1 ACACTAAAC-ACTAAACACTAACAATTTATATAACCAAATCTAACTACTAATAAAATAGTTATAA
*
78749425 ---T-TTTTTTAAAAATATATTATTACTAAAAAAATCACAATACACTAAT
65 AAATATTTTTT-TAAA-ATA-TATTACTAAAAAAATCACAATACACTAAT
78749471 ACACTAAACACTAA
1 ACACTAAACACTAA
78749485 CAATTTGTAA
Statistics
Matches: 210, Mismatches: 11, Indels: 28
0.84 0.04 0.11
Matches are distributed among these distances:
99 9 0.04
100 9 0.04
101 38 0.18
105 4 0.02
106 1 0.00
107 3 0.01
108 2 0.01
109 3 0.01
111 1 0.00
112 72 0.34
113 33 0.16
114 1 0.00
115 34 0.16
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.33
Consensus pattern (111 bp):
ACACTAAACACTAAACACTAACAATTTATATAACCAAATCTAACTACTAATAAAATAGTTATAAA
AATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAAT
Found at i:78750060 original size:3 final size:3
Alignment explanation
Indices: 78750054--78750088 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
78750044 TACCTTTTTT
*
78750054 TTC TTC TTC TTC TTC TTCC TTC TTC TTC TCC TTC T
1 TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC T
78750089 CATTTCTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:78750077 original size:16 final size:16
Alignment explanation
Indices: 78750056--78750087 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78750046 CCTTTTTTTT
*
78750056 CTTCTTCTTCTTCTTC
1 CTTCTTCTTCTCCTTC
78750072 CTTCTTCTTCTCCTTC
1 CTTCTTCTTCTCCTTC
78750088 TCATTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (16 bp):
CTTCTTCTTCTCCTTC
Found at i:78751340 original size:28 final size:27
Alignment explanation
Indices: 78751309--78751364 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
78751299 CTTTATTAGG
78751309 AAAAAAAT-AACTTTGATGAATTTTTAAT
1 AAAAAAATGAA-TTTGA-GAATTTTTAAT
*
78751337 AAAAAATTGAATTTGAGAATTTTTAAT
1 AAAAAAATGAATTTGAGAATTTTTAAT
78751364 A
1 A
78751365 TCAAGATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 12 0.46
28 12 0.46
29 2 0.08
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (27 bp):
AAAAAAATGAATTTGAGAATTTTTAAT
Found at i:78752321 original size:21 final size:20
Alignment explanation
Indices: 78752297--78752402 Score: 67
Period size: 22 Copynumber: 5.2 Consensus size: 20
78752287 TTATTATTAA
78752297 ATATAATTTAACAATAATAAT
1 ATATAATTTAA-AATAATAAT
78752318 ATATAATTT--AATAAT-AT
1 ATATAATTTAAAATAATAAT
* * * *
78752335 TTTTAATATAACAATTAATAAA
1 ATATAATTTAA-AA-TAATAAT
*
78752357 ATATGAA-TTAATAAAAATAAT
1 ATAT-AATTTAA-AATAATAAT
*
78752378 ATATAATATTATAAAAAATAAT
1 ATATAAT-TTA-AAATAATAAT
78752400 ATA
1 ATA
78752403 CAACCTACTT
Statistics
Matches: 66, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
17 8 0.12
18 6 0.09
20 4 0.06
21 22 0.33
22 23 0.35
23 3 0.05
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (20 bp):
ATATAATTTAAAATAATAAT
Found at i:78752336 original size:58 final size:61
Alignment explanation
Indices: 78752226--78752342 Score: 159
Period size: 61 Copynumber: 2.0 Consensus size: 61
78752216 TTTAATAGGA
* **
78752226 TTATTATTAAATATAATTTAATAAAAACAATAATACTTAATTTAATCCTA-TTTTAATAAAT
1 TTATTATTAAATATAATTTAACAAAAACAATAATAC-TAATTTAATAATATTTTTAATAAAT
* *
78752287 TTATTATTAAATATAATTTAACAATAATAAT-ATA-TAATTTAATAATATTTTTAATA
1 TTATTATTAAATATAATTTAACAAAAACAATAATACTAATTTAATAATATTTTTAATA
78752343 TAACAATTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
58 11 0.22
59 8 0.16
60 3 0.06
61 28 0.56
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (61 bp):
TTATTATTAAATATAATTTAACAAAAACAATAATACTAATTTAATAATATTTTTAATAAAT
Found at i:78753269 original size:13 final size:13
Alignment explanation
Indices: 78753251--78753277 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78753241 ACTTAAGCAT
78753251 ATATAATATAATA
1 ATATAATATAATA
78753264 ATATAATATAATA
1 ATATAATATAATA
78753277 A
1 A
78753278 AGCATAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:78768314 original size:39 final size:39
Alignment explanation
Indices: 78768269--78768351 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
78768259 TATATTCTGA
78768269 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
1 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
78768308 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
1 ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
78768347 ATTTT
1 ATTTT
78768352 TTTATGAATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (39 bp):
ATTTTAATTATATAAAAATTTAAAAATTTGTATGCAAGC
Found at i:78771692 original size:20 final size:20
Alignment explanation
Indices: 78771624--78771709 Score: 68
Period size: 20 Copynumber: 4.1 Consensus size: 20
78771614 TTATTTCATT
*
78771624 AAATAAAAAAAT-TTAAAAT
1 AAATAAAAAAATATTAAAAC
78771643 ATAATAAATCAAATATATTTAAAA-
1 A-AATAAA--AAA-ATA-TTAAAAC
*
78771667 ACATAAAAAAATATTAAAAC
1 AAATAAAAAAATATTAAAAC
* *
78771687 AAATAAAAATGATACTAAAAC
1 AAATAAAAA-AATATTAAAAC
78771708 AA
1 AA
78771710 TTCTTAAAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
19 7 0.13
20 17 0.31
21 14 0.25
22 3 0.05
23 7 0.13
24 1 0.02
25 6 0.11
ACGTcount: A:0.69, C:0.06, G:0.01, T:0.24
Consensus pattern (20 bp):
AAATAAAAAAATATTAAAAC
Found at i:78773098 original size:24 final size:26
Alignment explanation
Indices: 78773069--78773118 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
78773059 TCTTGTTTTA
* *
78773069 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTAAAAT
78773093 ATATTTGATTTATTATATTTTAAAAT
1 ATATTTGATTTATTATATTTTAAAAT
78773119 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTAAAAT
Found at i:78778809 original size:15 final size:15
Alignment explanation
Indices: 78778789--78778825 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
78778779 TATGTTGCTT
78778789 TGTTTTGATTAATGA
1 TGTTTTGATTAATGA
78778804 TGTTTTGATTAATGA
1 TGTTTTGATTAATGA
*
78778819 TATTTTG
1 TGTTTTG
78778826 GCATAAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (15 bp):
TGTTTTGATTAATGA
Found at i:78780854 original size:136 final size:136
Alignment explanation
Indices: 78780610--78780863 Score: 490
Period size: 136 Copynumber: 1.9 Consensus size: 136
78780600 GGTAAGGGAG
*
78780610 TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAATAGTGATTCGAGATCACTAAATCCAC
1 TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
78780675 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAAATATTTTTGAAT
66 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAAATATTTTTGAAT
78780740 TATAGA
131 TATAGA
*
78780746 TCTCTGATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
1 TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
78780811 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAA
66 CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAA
78780864 GAATTTATTA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 116 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (136 bp):
TCTCTAATGTAACAGCCTAAATTTCAGTGGTGTCGGGAACAGTGATTCGAGATCACTAAATCCAC
CAAGTTTGAAAATTTAGTAAATTGATATTAATGAGTCAAGTGTGAATTTAAAAATATTTTTGAAT
TATAGA
Found at i:78783534 original size:27 final size:27
Alignment explanation
Indices: 78783486--78783644 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
78783476 GCGAGGCTGC
* *
78783486 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
78783513 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
78783539 CAGATATATGTGGCAGAGTCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
78783566 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
78783593 CAGATATATGTGGCAGAGCCACCA-ATT
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
78783620 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
78783645 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:78783645 original size:54 final size:55
Alignment explanation
Indices: 78783504--78783647 Score: 231
Period size: 54 Copynumber: 2.7 Consensus size: 55
78783494 GTGACGAAGT
* * * *
78783504 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGT
1 CACCAGATTCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
78783558 CACCAGA-TCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATTCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
78783612 CACCA-ATTCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATTCAGATAATTGTGGCATAGCCACCAGGAC
78783648 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (55 bp):
CACCAGATTCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:78785273 original size:26 final size:26
Alignment explanation
Indices: 78785242--78785349 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
78785232 TGAAATGCCC
*
78785242 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
78785268 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
78785294 ATCATGGAATATTAACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
78785320 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
78785346 ATCA
1 ATCA
78785350 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:78790008 original size:8 final size:8
Alignment explanation
Indices: 78789997--78790034 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
78789987 ATTAGATAAA
78789997 TATTATTT
1 TATTATTT
*
78790005 TATTA--A
1 TATTATTT
78790011 TATTATTT
1 TATTATTT
78790019 TATTATTT
1 TATTATTT
78790027 TATTATTT
1 TATTATTT
78790035 ATTTAGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
6 5 0.19
8 21 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TATTATTT
Found at i:78790014 original size:14 final size:14
Alignment explanation
Indices: 78789995--78790023 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
78789985 TAATTAGATA
78789995 AATATTATTTTATT
1 AATATTATTTTATT
78790009 AATATTATTTTATT
1 AATATTATTTTATT
78790023 A
1 A
78790024 TTTTATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
AATATTATTTTATT
Found at i:78790025 original size:22 final size:20
Alignment explanation
Indices: 78789997--78790038 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
78789987 ATTAGATAAA
78789997 TATTATTTTATTAATATTATTT
1 TATTATTTTATT-AT-TTATTT
78790019 TATTATTTTATTATTTATTT
1 TATTATTTTATTATTTATTT
78790039 AGTATATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTTTATTATTTATTT
Found at i:78798315 original size:4 final size:4
Alignment explanation
Indices: 78798308--78798338 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
78798298 AACTTGCTCG
*
78798308 TTTA TTTA TTTA TTTA TTCA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
78798339 CTAAAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:78798645 original size:24 final size:23
Alignment explanation
Indices: 78798600--78798645 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
78798590 CTACTTACTC
*
78798600 TAAACTTGCTTTATATATTATTT
1 TAAACTTGCTTTATATACTATTT
* *
78798623 TAAACTTGTTTTTATGTACTATT
1 TAAACTTG-CTTTATATACTATT
78798646 GTTTTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.57
Consensus pattern (23 bp):
TAAACTTGCTTTATATACTATTT
Found at i:78800864 original size:15 final size:15
Alignment explanation
Indices: 78800844--78800875 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
78800834 GTGAATGATG
78800844 TGTGGATGTCTTGGT
1 TGTGGATGTCTTGGT
*
78800859 TGTGGATGTTTTGGT
1 TGTGGATGTCTTGGT
78800874 TG
1 TG
78800876 GCTAAGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.03, G:0.41, T:0.50
Consensus pattern (15 bp):
TGTGGATGTCTTGGT
Found at i:78803904 original size:35 final size:35
Alignment explanation
Indices: 78803878--78804072 Score: 250
Period size: 35 Copynumber: 5.6 Consensus size: 35
78803868 CATGGCAAAG
78803878 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
78803913 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
* * * *
78803948 TGAGAAATATAGGTATGGTATTATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
** * *
78803983 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACCGAGT
* **
78804018 TGTGAAACGTAGGTATGGTATTTTCCATACCGAG-
1 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
* *
78804052 TATAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
78804073 TTCAATGAGG
Statistics
Matches: 142, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
34 19 0.13
35 121 0.85
36 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
Found at i:78804047 original size:105 final size:104
Alignment explanation
Indices: 78803881--78804073 Score: 291
Period size: 105 Copynumber: 1.8 Consensus size: 104
78803871 GGCAAAGTGT
* *
78803881 GAAATGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACCGA
1 GAAATGTAGGTATGGCATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGA
78803946 GT-TGAGAAATATAGGTATGGTATTATCCATACTGAGTTAA
66 GTAT-A-AAATATAGGTATGGTATTATCCATACTGAGTTAA
* **
78803986 GAAATGTAGGTATGGCAT-TTCCCATACCGAGTTGTGAAACGTAGGTATGGTATTTTCCATACCG
1 GAAATGTAGGTATGGCATCAT-CCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCG
*
78804050 AGTATAAAATGTAGGTATGGTATT
65 AGTATAAAATATAGGTATGGTATT
78804074 TCAATGAGGA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
104 18 0.22
105 61 0.76
106 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.32
Consensus pattern (104 bp):
GAAATGTAGGTATGGCATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATCATCCATACCGA
GTATAAAATATAGGTATGGTATTATCCATACTGAGTTAA
Found at i:78811982 original size:28 final size:28
Alignment explanation
Indices: 78811933--78811986 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
78811923 CGTACATGTA
* *
78811933 TATACAGTATTATCTTTTATTACTTTAT
1 TATACAGTATGATCTTTAATTACTTTAT
* *
78811961 TATATAGTATGATTTTTAATTACTTT
1 TATACAGTATGATCTTTAATTACTTT
78811987 TTTTGTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (28 bp):
TATACAGTATGATCTTTAATTACTTTAT
Found at i:78815233 original size:27 final size:27
Alignment explanation
Indices: 78815203--78815256 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78815193 TCTATGTACA
* *
78815203 TATATGTATATTATTTGTTCTAAAATT
1 TATATATATATCATTTGTTCTAAAATT
* *
78815230 TATATATATATCATTTTTTCTTAAATT
1 TATATATATATCATTTGTTCTAAAATT
78815257 ATTTTATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
TATATATATATCATTTGTTCTAAAATT
Found at i:78817621 original size:90 final size:89
Alignment explanation
Indices: 78817500--78817709 Score: 259
Period size: 90 Copynumber: 2.4 Consensus size: 89
78817490 TTAAGCCTTT
* * * * * *
78817500 TTTTTTTTGAAAAGGGTTTGAGAGTCATTTTGATGCATTTTGAAAGTTCAAGGACTCAATTGAGT
1 TTTTTTTTGAAAAAGGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGGACCCAAATGAGT
* *
78817565 GCAAAAAAAACTAG-GGGCTTAATTGA
66 G-AAAAAAAA-AAGAAGGCTTAATT-A
*
78817591 TTTTTTTT-AAAAAGGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGT
1 TTTTTTTTGAAAAAGGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGGACCCAAATGAGT
78817655 GAAAAAAAAAAGCAAGGCTTAATTA
66 GAAAAAAAAAAG-AAGGCTTAATTA
78817680 TTTTTTTTGAAAAA-GTTTGAA-GG-CTTTTTG
1 TTTTTTTTGAAAAAGGTTT-AAGGGTCTTTTTG
78817710 CACCGTTAAG
Statistics
Matches: 106, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
88 9 0.08
89 23 0.22
90 66 0.62
91 8 0.08
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (89 bp):
TTTTTTTTGAAAAAGGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGGACCCAAATGAGT
GAAAAAAAAAAGAAGGCTTAATTA
Found at i:78817902 original size:39 final size:39
Alignment explanation
Indices: 78817816--78817911 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 39
78817806 AAATTGTATA
*
78817816 TATATATTTTGTTTATTACAATTTTATATATAAATAACT
1 TATATTTTTTGTTTATTACAATTTTATATATAAATAACT
* *
78817855 TCACATTTTTTGTTGT-TTAC-ATTTTAATATTATATATAAC-
1 T-ATATTTTTTGTT-TATTACAATTTT-ATA-TATAAATAACT
78817895 TATATTTTTTGTGTTAT
1 TATATTTTTTGT-TTAT
78817912 AAATTATGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
39 17 0.36
40 20 0.43
41 10 0.21
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.57
Consensus pattern (39 bp):
TATATTTTTTGTTTATTACAATTTTATATATAAATAACT
Found at i:78819893 original size:14 final size:14
Alignment explanation
Indices: 78819874--78819910 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
78819864 GAATTATTTG
78819874 AGTCAATTCAAATA
1 AGTCAATTCAAATA
*
78819888 AGTCAATCCAAATA
1 AGTCAATTCAAATA
*
78819902 ACTCAATTC
1 AGTCAATTC
78819911 GAGTTTTGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (14 bp):
AGTCAATTCAAATA
Found at i:78820087 original size:18 final size:20
Alignment explanation
Indices: 78820052--78820101 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
78820042 AAAGTTACAA
*
78820052 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
*
78820071 CAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTTAT
78820090 AAAAATTTCAAA
1 AAAAA-TTCAAA
78820102 TTTTATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 16 0.62
20 6 0.23
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:78826223 original size:12 final size:12
Alignment explanation
Indices: 78826206--78826230 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78826196 TACTGCTCCT
78826206 TTTAATTAAAAA
1 TTTAATTAAAAA
78826218 TTTAATTAAAAA
1 TTTAATTAAAAA
78826230 T
1 T
78826231 AAGTGTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TTTAATTAAAAA
Found at i:78829182 original size:31 final size:31
Alignment explanation
Indices: 78829124--78829182 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
78829114 TGTGCAATTA
* * *
78829124 TATAAATCAAACTTTGATTTCGGTTCAAATG
1 TATAAATAAAACTTTAATTTCGATTCAAATG
* *
78829155 TATAAATAAAATTTTAATTTTGATTCAA
1 TATAAATAAAACTTTAATTTCGATTCAA
78829183 TTATATATGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Consensus pattern (31 bp):
TATAAATAAAACTTTAATTTCGATTCAAATG
Found at i:78833213 original size:44 final size:44
Alignment explanation
Indices: 78833160--78833247 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
78833150 TTTAATAGAT
*
78833160 AACGACTAATTTGTTTTTTGATCTAATGTACATGAATTAATTTA
1 AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
*
78833204 AACGACTAATTTATTTTTTGATCTAATGTACATGGATTAATTTA
1 AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
78833248 TTCATTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.45
Consensus pattern (44 bp):
AACGACTAATTTATTTTTTGATCTAATGTACATGAATTAATTTA
Found at i:78838466 original size:3 final size:3
Alignment explanation
Indices: 78838453--78838485 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
78838443 AATTTGATTA
78838453 ATT AGTT ATT ATT ATT ATT ATT ATT ATT -TT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
78838486 TTAGTTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:78848356 original size:2 final size:2
Alignment explanation
Indices: 78848349--78848373 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
78848339 TAAATAATAC
78848349 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
78848374 AACTCCTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78858294 original size:9 final size:10
Alignment explanation
Indices: 78858277--78858315 Score: 55
Period size: 9 Copynumber: 4.0 Consensus size: 10
78858267 ATAAAATGTT
78858277 ATATTAATAA
1 ATATTAATAA
78858287 AT-TTAATAAA
1 ATATTAAT-AA
78858297 ATATTAAT-A
1 ATATTAATAA
78858306 ATATTAATAA
1 ATATTAATAA
78858316 TTAGACTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 14 0.54
10 7 0.27
11 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATTAATAA
Found at i:78858302 original size:20 final size:20
Alignment explanation
Indices: 78858277--78858315 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
78858267 ATAAAATGTT
78858277 ATATTAATAA-ATTTAATAAA
1 ATATTAATAATA-TTAATAAA
78858297 ATATTAATAATATTAATAA
1 ATATTAATAATATTAATAA
78858316 TTAGACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATTAATAATATTAATAAA
Found at i:78862580 original size:43 final size:43
Alignment explanation
Indices: 78862514--78862641 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
78862504 CTAGTACAAC
* * * * *
78862514 GCCAATGTCCCAGACGTGATCTTACATGTAATCACATATTGAT
1 GCCACTGTCCCAGACGTGGTCTTACACGTAATCACAAATCGAT
*
78862557 GCCACTGTCCCAGACAG-GGTCTTACACGTAAACTACAAATCGAT
1 GCCACTGTCCCAGAC-GTGGTCTTACACGTAATC-ACAAATCGAT
* *
78862601 GCCAAC-GTCCTAGACGTGGTCTTACACGAAATCACAAATCG
1 GCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACAAATCG
78862642 GAATCCTATG
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
43 36 0.50
44 34 0.47
45 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCACTGTCCCAGACGTGGTCTTACACGTAATCACAAATCGAT
Found at i:78862976 original size:12 final size:12
Alignment explanation
Indices: 78862959--78862983 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78862949 AAATTAAACT
78862959 TATTTAATCAAA
1 TATTTAATCAAA
78862971 TATTTAATCAAA
1 TATTTAATCAAA
78862983 T
1 T
78862984 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATTTAATCAAA
Found at i:78864229 original size:37 final size:37
Alignment explanation
Indices: 78864188--78864299 Score: 119
Period size: 37 Copynumber: 3.0 Consensus size: 37
78864178 ATTTGAAAAA
*
78864188 TAATATTATTTTAATAGATTTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGATTTAATATT-AATTTAATAT
78864225 TAATACTTATCTTAATAG-TATT-ATATTAATTTAATAT
1 TAATA-TTATCTTAATAGAT-TTAATATTAATTTAATAT
78864262 TAGAGTTATTATCTTAAT--ATTTAAT-TTAATTTAATAT
1 TA-A--TATTATCTTAATAGATTTAATATTAATTTAATAT
78864299 T
1 T
78864300 TGTCTTGTTG
Statistics
Matches: 66, Mismatches: 1, Indels: 16
0.80 0.01 0.19
Matches are distributed among these distances:
36 8 0.12
37 29 0.44
38 17 0.26
39 10 0.15
40 2 0.03
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.54
Consensus pattern (37 bp):
TAATATTATCTTAATAGATTTAATATTAATTTAATAT
Found at i:78864369 original size:22 final size:23
Alignment explanation
Indices: 78864328--78864390 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
78864318 TCTAAGATTT
78864328 AATATTAAATTTAATCTAATATA
1 AATATTAAATTTAATCTAATATA
* *
78864351 AATATTATA-TTAATTTAATATTA
1 AATATTAAATTTAATCTAATA-TA
*
78864374 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
78864391 AATAATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
22 10 0.31
23 12 0.38
24 1 0.03
25 4 0.12
26 5 0.16
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (23 bp):
AATATTAAATTTAATCTAATATA
Found at i:78867223 original size:4 final size:4
Alignment explanation
Indices: 78867216--78867249 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
78867206 TTTTAATTCT
* *
78867216 TTTA TTTA TTTA TTCA TTTA TTTA CTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
78867250 ATTCCTTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:78867235 original size:16 final size:16
Alignment explanation
Indices: 78867200--78867245 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
78867190 CTAAGGCCTC
*
78867200 TATTTATTTTAATTCTTT
1 TATTTA-TTT-ATTCATT
78867218 TATTTATTTATTCATT
1 TATTTATTTATTCATT
*
78867234 TATTTACTTATT
1 TATTTATTTATT
78867246 TATTATTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 17 0.65
17 3 0.12
18 6 0.23
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTATTTATTCATT
Found at i:78868770 original size:16 final size:16
Alignment explanation
Indices: 78868751--78868781 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78868741 TTTTGTTAAT
78868751 TTTTTATTATTATTTA
1 TTTTTATTATTATTTA
*
78868767 TTTTTATTTTTATTT
1 TTTTTATTATTATTT
78868782 GGTTCTTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTATTATTATTTA
Found at i:78871901 original size:15 final size:16
Alignment explanation
Indices: 78871872--78871905 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
78871862 ATATATATGT
78871872 ATATAGATATATTAGC
1 ATATAGATATATTAGC
78871888 ATATAGAT-TATTAGC
1 ATATAGATATATTAGC
78871903 ATA
1 ATA
78871906 CGTATAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (16 bp):
ATATAGATATATTAGC
Found at i:78874629 original size:10 final size:10
Alignment explanation
Indices: 78874610--78874668 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
78874600 TTAAATTCTA
78874610 AAAGATAAAT
1 AAAGATAAAT
78874620 ATAA-ATAAAT
1 A-AAGATAAAT
*
78874630 AAAGATAATT
1 AAAGATAAAT
78874640 AAAGATAAAT
1 AAAGATAAAT
*
78874650 AAGGATAAAT
1 AAAGATAAAT
*
78874660 AAATATAAA
1 AAAGATAAA
78874669 AGCTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.90
11 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:78880563 original size:126 final size:126
Alignment explanation
Indices: 78880379--78880632 Score: 359
Period size: 126 Copynumber: 2.0 Consensus size: 126
78880369 AAGCTTCTTC
* * * *
78880379 TTGCTAATTGGTTTTGTCACAGACTTATCATTTCCTCCTTCAACCACATCCAAGTTAGAAGGGCT
1 TTGCTAACTGATTTTGTCACAGACTTATCATTTCCACCTTCAACCACATCCAACTTAGAAGGGCT
* * *
78880444 GT-CGACATTGTCCTTCCCCAGCTTTCCATCAAGTGAAGGAACCTGAACATCTCGCTGCTTA
66 ATGCGA-ATTATCCTTCCCCAGCTTTCCATAAAGTGAAGGAACCTGAACATCTCGCTGCTTA
* * *
78880505 TTGCTAACTGATTTTGTCACTGA-TTCATCATTTCCACCTTCAAGCACGTCCAACTTAGAAGGGC
1 TTGCTAACTGATTTTGTCACAGACTT-ATCATTTCCACCTTCAACCACATCCAACTTAGAAGGGC
* * *
78880569 TATGGGAATTATCCTTCCCCAGCTTTCTATAAAGTGAAGGAACCTGAACATCTTGCTGCTTA
65 TATGCGAATTATCCTTCCCCAGCTTTCCATAAAGTGAAGGAACCTGAACATCTCGCTGCTTA
78880631 TT
1 TT
78880633 CTGCAGCTCA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
125 2 0.02
126 109 0.96
127 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.33
Consensus pattern (126 bp):
TTGCTAACTGATTTTGTCACAGACTTATCATTTCCACCTTCAACCACATCCAACTTAGAAGGGCT
ATGCGAATTATCCTTCCCCAGCTTTCCATAAAGTGAAGGAACCTGAACATCTCGCTGCTTA
Found at i:78885380 original size:29 final size:30
Alignment explanation
Indices: 78885336--78885404 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
78885326 TTTTAACTTA
* *
78885336 ATTTAAAATATTAATTCAAAA-AATTTTTG
1 ATTTAAAATATCAATTCAAAATAATATTTG
* *
78885365 ATTTAAAATCTCAATTTAAAATTAATATTTG
1 ATTTAAAATATCAATTCAAAA-TAATATTTG
78885396 ATTTGAAAA
1 ATTT-AAAA
78885405 GCTAATTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 18 0.55
31 11 0.33
32 4 0.12
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (30 bp):
ATTTAAAATATCAATTCAAAATAATATTTG
Found at i:78888951 original size:28 final size:27
Alignment explanation
Indices: 78888887--78888953 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
78888877 ACACAAATTG
* * *
78888887 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
78888914 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
78888943 AAAATAAAATA
1 AAAATAAAATA
78888954 TATATATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 4 0.12
28 20 0.62
29 8 0.25
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:78889590 original size:3 final size:3
Alignment explanation
Indices: 78889536--78889571 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
78889526 ATTATGTTTA
78889536 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
78889572 AAAACATGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:78894905 original size:29 final size:29
Alignment explanation
Indices: 78894868--78894970 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
78894858 GGTTGAAGAA
*
78894868 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCAATTACTGAT
* ** **
78894897 CTCGCACACATAGTG-CTCGGTTAAAGGAGT
1 CTCGCACACACAGTGCCTCAATT-ACTGA-T
*
78894927 -TCGCACACACAGTGCCTGAATTACTGAT
1 CTCGCACACACAGTGCCTCAATTACTGAT
*
78894955 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
78894971 TTGGTTAAAG
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
28 6 0.11
29 46 0.81
30 5 0.09
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAATTACTGAT
Found at i:78894956 original size:58 final size:58
Alignment explanation
Indices: 78894837--78895002 Score: 262
Period size: 58 Copynumber: 2.9 Consensus size: 58
78894827 CCCACTGACC
* * *
78894837 GATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGTACACACAGTGCCTCAATTACT
1 GATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACT
* *
78894894 GATCTCGCACACATAGTGCTCGGTTAAAGGAGTTCGCACACACAGTGCCTGAATTACT
1 GATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACT
* *
78894952 GATCTCGCACACATAGTGCTTGGTTAAAGGAATTTGCACACACAGTGCCTC
1 GATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
78895003 TAATCATTCG
Statistics
Matches: 99, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
57 27 0.27
58 72 0.73
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (58 bp):
GATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACT
Found at i:78894990 original size:29 final size:29
Alignment explanation
Indices: 78894898--78894999 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
78894888 ATTACTGATC
* * *
78894898 TCGCACACATAGTGCTCGGTTAAAGGAGT
1 TCGCACACACAGTGCTTGGTTAAAGGAAT
* * **
78894927 TCGCACACACAGTGCCTGAATT-ACTG-AT
1 TCGCACACACAGTGCTTG-GTTAAAGGAAT
*
78894955 CTCGCACACATAGTGCTTGGTTAAAGGAAT
1 -TCGCACACACAGTGCTTGGTTAAAGGAAT
*
78894985 TTGCACACACAGTGC
1 TCGCACACACAGTGC
78895000 CTCTAATCAT
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
28 3 0.05
29 48 0.87
30 4 0.07
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (29 bp):
TCGCACACACAGTGCTTGGTTAAAGGAAT
Found at i:78895217 original size:43 final size:43
Alignment explanation
Indices: 78895156--78895289 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 43
78895146 CCTTGCTCGA
**
78895156 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
*
78895199 ATCACCGGCACGAAGCCTGCTAGGCACGAA-AGCCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGA-CCCGAATACAC
* * * * *
78895242 ATCACCGACACGAAGCCTACTAGGCATGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
78895285 ATCAC
1 ATCAC
78895290 TGAGTTTCAT
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 79 0.99
ACGTcount: A:0.34, C:0.32, G:0.21, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAC
Found at i:78898953 original size:27 final size:27
Alignment explanation
Indices: 78898917--78898978 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
78898907 GCTACAACAT
* * *
78898917 CATA-GGTAGTCCGTTGGGACAATAAA
1 CATAGGGTAGTCCATCGGGAAAATAAA
78898943 CATAGGGTAGTCCATCGGGAAAATAAA
1 CATAGGGTAGTCCATCGGGAAAATAAA
*
78898970 CACAGGGTA
1 CATAGGGTA
78898979 ACCTGTTGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.19
Consensus pattern (27 bp):
CATAGGGTAGTCCATCGGGAAAATAAA
Found at i:78901771 original size:47 final size:47
Alignment explanation
Indices: 78901713--78902112 Score: 629
Period size: 47 Copynumber: 8.5 Consensus size: 47
78901703 ATTCAGCCAA
* *
78901713 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
78901760 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
78901809 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
78901856 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
78901903 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
78901950 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
78901997 GAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * *
78902044 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
78902091 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
78902113 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 288 0.86
49 45 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:78902287 original size:37 final size:37
Alignment explanation
Indices: 78902231--78902309 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
78902221 CCGAGCTCTA
* * *
78902231 AAGACCCGATGACTACGTGTGG-GAATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
78902268 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78902305 AAGAC
1 AAGAC
78902310 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78904215 original size:43 final size:43
Alignment explanation
Indices: 78904167--78904266 Score: 200
Period size: 43 Copynumber: 2.3 Consensus size: 43
78904157 TTGGTTTTCA
78904167 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78904210 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78904253 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78904267 AGCTTGAAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:78904286 original size:29 final size:29
Alignment explanation
Indices: 78904251--78904324 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
78904241 GTTGTGAGAT
*
78904251 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
78904280 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78904309 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78904325 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78908458 original size:47 final size:47
Alignment explanation
Indices: 78908400--78908799 Score: 620
Period size: 47 Copynumber: 8.5 Consensus size: 47
78908390 ATTCAGCCAA
* *
78908400 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
78908447 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
78908496 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
78908543 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
78908590 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
78908637 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * *
78908684 GAAACTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * *
78908731 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
78908778 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
78908800 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 288 0.86
49 45 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:78908974 original size:37 final size:37
Alignment explanation
Indices: 78908918--78908996 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
78908908 CCGAGCTCTA
* * *
78908918 AAGACCCGATGACTACGTGTAGGA-ATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGT-GGAGATTATGTCCGGGT
*
78908955 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78908992 AAGAC
1 AAGAC
78908997 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 3 0.08
37 34 0.92
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78911922 original size:21 final size:21
Alignment explanation
Indices: 78911897--78911939 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
78911887 AAGAACTATT
78911897 ATCATGGCCCAAAGCCAAATC
1 ATCATGGCCCAAAGCCAAATC
**
78911918 ATCATGGCCTGAAGCCAAATC
1 ATCATGGCCCAAAGCCAAATC
78911939 A
1 A
78911940 GTAAAATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.16
Consensus pattern (21 bp):
ATCATGGCCCAAAGCCAAATC
Found at i:78913739 original size:16 final size:16
Alignment explanation
Indices: 78913718--78913748 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78913708 TTCACTATTA
*
78913718 TGTCTTTTATATTTTT
1 TGTCTTTCATATTTTT
78913734 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
78913749 GTATGCATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTCTTTCATATTTTT
Found at i:78915363 original size:17 final size:18
Alignment explanation
Indices: 78915324--78915399 Score: 68
Period size: 19 Copynumber: 4.2 Consensus size: 18
78915314 ATTCCAAAAA
*
78915324 TAATA-TTATTTTAATAGTT
1 TAATATTTAATTTAATA--T
78915343 TAATATTTAATTTAAT-T
1 TAATATTTAATTTAATAT
*
78915360 TAATATTT-ATCTTAATAG
1 TAATATTTAAT-TTAATAT
*
78915378 TAGTATATTAATTTAATAT
1 TAATAT-TTAATTTAATAT
78915397 TAA
1 TAA
78915400 ATTGATTAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
16 2 0.04
17 14 0.30
18 5 0.11
19 15 0.32
20 11 0.23
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (18 bp):
TAATATTTAATTTAATAT
Found at i:78915386 original size:37 final size:36
Alignment explanation
Indices: 78915324--78915399 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
78915314 ATTCCAAAAA
* *
78915324 TAATATTATTTTAATAGTTTAATATTTAATTTAAT-T
1 TAATATTATCTTAATAGTGTAATA-TTAATTTAATAT
78915360 TAATATTTATCTTAATAGTAGT-ATATTAATTTAATAT
1 TAATA-TTATCTTAATAGT-GTAATATTAATTTAATAT
78915397 TAA
1 TAA
78915400 ATTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 15 0.43
37 19 0.54
38 1 0.03
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTGTAATATTAATTTAATAT
Found at i:78917513 original size:16 final size:16
Alignment explanation
Indices: 78917492--78917559 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
78917482 TTTGGTTCGC
78917492 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
78917508 TGTATTGGATTAGAGC
1 TGTATTGGATTAGAGG
*
78917524 TATATTGGATTAGAGG
1 TGTATTGGATTAGAGG
78917540 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
78917556 TGTA
1 TGTA
78917560 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.26, C:0.01, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:78917822 original size:18 final size:17
Alignment explanation
Indices: 78917795--78917829 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78917785 TTATTTTTAA
*
78917795 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
78917813 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
78917830 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:78917895 original size:157 final size:157
Alignment explanation
Indices: 78917682--78917998 Score: 553
Period size: 157 Copynumber: 2.0 Consensus size: 157
78917672 TAGAATACCC
* *
78917682 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTAATGTTATTATTATTTAAATTTTAATAAGATTATTA
* * *
78917747 TTATCAATAATAAATAATTTAATCATATTTAAAAATAATTATTTTTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAAAATAATTATTATTAAATATATTATAATTAAAA
78917812 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
78917839 TTAGCAGAAATTTGTTTTGGTAAATTATTAATGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTAATGTTATTATTATTTAAATTTTAATAAGATTATTA
* *
78917904 ATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAAAATAATTATTATTAAATATATTATAATTAAAA
78917969 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
78917996 TTA
1 TTA
78917999 ATATTCTTAT
Statistics
Matches: 151, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 151 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTAATGTTATTATTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAAAATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:78917969 original size:16 final size:16
Alignment explanation
Indices: 78917932--78917973 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
78917922 TTAATCATAT
*
78917932 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
78917948 TT-AAATATATTATAA
1 TTAAAATATATTATAA
78917963 TTAAAATATAT
1 TTAAAATATAT
78917974 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:78917980 original size:14 final size:15
Alignment explanation
Indices: 78917941--78917982 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
78917931 TTTAAACATA
*
78917941 ATTATTATTAAATAT
1 ATTATAATTAAATAT
78917956 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
78917970 A-TATAATTTAATA
1 ATTATAATTAAATA
78917983 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:78922906 original size:8 final size:9
Alignment explanation
Indices: 78922887--78922918 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
78922877 AATTATTTTT
78922887 AAATTTTAA
1 AAATTTTAA
78922896 AAATTTTAA
1 AAATTTTAA
78922905 AAATTTTAA
1 AAATTTTAA
78922914 AAATT
1 AAATT
78922919 AATTAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AAATTTTAA
Found at i:78923535 original size:16 final size:16
Alignment explanation
Indices: 78923514--78923583 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
78923504 TTTGGTTCAC
* *
78923514 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* *
78923530 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
78923546 TGTAATGAAATAGAGG
1 TGTAATGGAATAGAGG
*
78923562 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
78923578 TGTAAT
1 TGTAAT
78923584 AGCAAATCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:78923613 original size:45 final size:44
Alignment explanation
Indices: 78923562--78923652 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
78923552 GAAATAGAGG
* *
78923562 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
78923607 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
78923651 TG
1 TG
78923653 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:78923838 original size:18 final size:17
Alignment explanation
Indices: 78923817--78923851 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78923807 TTATTATTAA
*
78923817 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
78923835 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
78923852 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:78923898 original size:61 final size:61
Alignment explanation
Indices: 78923832--78924019 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
78923822 TTTTAATTAA
78923832 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
78923893 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
78923952 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
78924013 AATATAT
1 AATATAT
78924020 GATACTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 23 0.24
61 37 0.39
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:78923965 original size:14 final size:15
Alignment explanation
Indices: 78923916--78923967 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
78923906 ATAAAATATA
78923916 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
78923931 TATTAAATATATTAT
1 AATTAAATATATTAT
78923946 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
78923959 AATTTAATA
1 AATTAAATA
78923968 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:78924013 original size:120 final size:121
Alignment explanation
Indices: 78923800--78924092 Score: 518
Period size: 120 Copynumber: 2.4 Consensus size: 121
78923790 ATCATATTTA
78923800 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
78923865 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
78923920 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
78923985 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
78924041 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
78924093 TAAAATAATT
Statistics
Matches: 165, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 163 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:78924139 original size:101 final size:93
Alignment explanation
Indices: 78924033--78924315 Score: 317
Period size: 91 Copynumber: 3.0 Consensus size: 93
78924023 ACTATAAAAG
* * * *
78924033 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT---
* *
78924097 ATAATTATAACTAATAAATTATCTTATATGAATTTGT
62 -T--CT-TAA-TAATAAATTATCTTATATGAATTTAT
* *
78924134 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
* *
78924197 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTATCTTATATGAATTTAT
* *
78924225 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
78924288 AATAATAAAATGT-TCTTATATGAATTTA
66 AATAAT-AAAT-TATCTTATATGAATTTA
78924316 CTAAAATCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
91 88 0.54
92 21 0.13
93 2 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 48 0.29
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTCTT
AATAATAAATTATCTTATATGAATTTAT
Found at i:78924162 original size:26 final size:28
Alignment explanation
Indices: 78924133--78924193 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
78924123 TATGAATTTG
*
78924133 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
78924159 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
78924187 TAAAATT
1 TATAATT
78924194 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:78924191 original size:47 final size:46
Alignment explanation
Indices: 78924140--78924283 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
78924130 TTGTATAATT
78924140 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
78924187 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
78924231 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
78924278 TAAAAT
1 TAAAAT
78924284 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:78924203 original size:91 final size:90
Alignment explanation
Indices: 78924108--78924315 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 90
78924098 TAATTATAAC
* * * *
78924108 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
78924173 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
78924199 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
78924264 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
78924290 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
78924316 CTAAAATCAA
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
91 87 0.81
92 21 0.19
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:78924275 original size:44 final size:43
Alignment explanation
Indices: 78924133--78924275 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
78924123 TATGAATTTG
* *
78924133 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
78924177 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
78924224 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
78924268 TATAATTT
1 TATAATTT
78924276 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:78924290 original size:47 final size:47
Alignment explanation
Indices: 78924158--78924296 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
78924148 TTATTATTAC
* *
78924158 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
78924205 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
78924249 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
78924296 A
1 A
78924297 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Done.