Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 243 of 320
Found at i:79709613 original size:12 final size:12
Alignment explanation
Indices: 79709596--79709624 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
79709586 CTCTTTTATC
79709596 TTTCTTTCCCTT
1 TTTCTTTCCCTT
79709608 TTTCTTTCCCTT
1 TTTCTTTCCCTT
79709620 TTTCT
1 TTTCT
79709625 CCCCTGCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTCTTTCCCTT
Found at i:79709615 original size:16 final size:17
Alignment explanation
Indices: 79709583--79709615 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79709573 AATCCTCAAT
*
79709583 TTTCTCTTTTATCTTTC
1 TTTCCCTTTTATCTTTC
79709600 TTTCCCTTTT-TCTTTC
1 TTTCCCTTTTATCTTTC
79709616 CCTTTTTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTCCCTTTTATCTTTC
Found at i:79711676 original size:16 final size:18
Alignment explanation
Indices: 79711655--79711692 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
79711645 GCAACGAACC
79711655 ATTTTGCT-AAAATC-AT
1 ATTTTGCTAAAAATCAAT
79711671 ATTTTGCTAAAAATCAAT
1 ATTTTGCTAAAAATCAAT
79711689 ATTT
1 ATTT
79711693 CATGTACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 6 0.30
18 6 0.30
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (18 bp):
ATTTTGCTAAAAATCAAT
Found at i:79712801 original size:76 final size:76
Alignment explanation
Indices: 79712708--79712857 Score: 282
Period size: 76 Copynumber: 2.0 Consensus size: 76
79712698 GTTTCGACGG
*
79712708 ATTTAGTCTCTCGTTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
1 ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
79712773 TGTTTAGGCGA
66 TGTTTAGGCGA
*
79712784 ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTCACATAAATCACAAATCAAATAATAATATTT
1 ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
79712849 TGTTTAGGC
66 TGTTTAGGC
79712858 ATTATTAATG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (76 bp):
ATTTAGTCTCTCATTTTAGAATACTTAAAGTATTAACATAAATCACAAATCAAATAATAATATTT
TGTTTAGGCGA
Found at i:79713379 original size:13 final size:13
Alignment explanation
Indices: 79713361--79713386 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79713351 AGGAGGAGAA
79713361 AAGAAGAAAACGG
1 AAGAAGAAAACGG
79713374 AAGAAGAAAACGG
1 AAGAAGAAAACGG
79713387 TGAAAAACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAACGG
Found at i:79718705 original size:64 final size:64
Alignment explanation
Indices: 79718625--79718752 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
79718615 GTTATTTGGT
*
79718625 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAAGATAATGTTATATGAAGCAACGGG
1 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAACATAATGTTATATGAAGCAACGGG
*
79718689 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGACCATAATGTTATATGAAGCAACGGG
1 TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAACATAATGTTATATGAAGCAACGGG
79718753 ATCATGTTAC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (64 bp):
TCTGACAAGTGCAGACTAGATTGTTGAAATCAACTGAGAACATAATGTTATATGAAGCAACGGG
Found at i:79721611 original size:21 final size:21
Alignment explanation
Indices: 79721528--79721604 Score: 127
Period size: 21 Copynumber: 3.7 Consensus size: 21
79721518 CTTTGGGGGA
79721528 ATGGGCGGCATGGGCGACATG
1 ATGGGCGGCATGGGCGACATG
*
79721549 ATGGGCGGCATGGGCGATATG
1 ATGGGCGGCATGGGCGACATG
*
79721570 ATGGGCGGCATGGGTGACATG
1 ATGGGCGGCATGGGCGACATG
*
79721591 ATGGGTGGCATGGG
1 ATGGGCGGCATGGG
79721605 TGGCATGGAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.18, C:0.14, G:0.49, T:0.18
Consensus pattern (21 bp):
ATGGGCGGCATGGGCGACATG
Found at i:79722971 original size:23 final size:23
Alignment explanation
Indices: 79722941--79722989 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
79722931 TTCAACTCGA
*
79722941 ACTTATTCGAGTTTGCTT-GAATT
1 ACTTATTCAAG-TTGCTTCGAATT
*
79722964 ACTTATTCAAGTTGGTTCGAATT
1 ACTTATTCAAGTTGCTTCGAATT
79722987 ACT
1 ACT
79722990 CGAACTCGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.45
Consensus pattern (23 bp):
ACTTATTCAAGTTGCTTCGAATT
Found at i:79730249 original size:26 final size:26
Alignment explanation
Indices: 79730219--79730269 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
79730209 GTTTATCTTG
79730219 AAACTTTATTTCCTTTTATTTTTTTC
1 AAACTTTATTTCCTTTTATTTTTTTC
*
79730245 AAACTTTATTTCCTTTTCTTTTTTT
1 AAACTTTATTTCCTTTTATTTTTTT
79730270 TTCATTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.67
Consensus pattern (26 bp):
AAACTTTATTTCCTTTTATTTTTTTC
Found at i:79731744 original size:18 final size:17
Alignment explanation
Indices: 79731717--79731752 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
79731707 TAAATAAGTT
79731717 AATTAGGATTAAATTGA
1 AATTAGGATTAAATTGA
*
79731734 AATTGAGGATTGAATTGA
1 AATT-AGGATTAAATTGA
79731752 A
1 A
79731753 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (17 bp):
AATTAGGATTAAATTGA
Found at i:79732182 original size:44 final size:44
Alignment explanation
Indices: 79732132--79732217 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
79732122 TGTACATGGA
79732132 TACTTCGACCTT-GAGTCAATGAGGCACTA-ATAGTGTCGTACTGT
1 TACTTCGA-CTTCGAGTCAATGAGGCACTATAT-GTGTCGTACTGT
* * *
79732176 TACTTCGACTTCGTGTCGATGAGGCACTTTATGTGTCGTACT
1 TACTTCGACTTCGAGTCAATGAGGCACTATATGTGTCGTACT
79732218 ATTTCTGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 3 0.08
44 32 0.86
45 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (44 bp):
TACTTCGACTTCGAGTCAATGAGGCACTATATGTGTCGTACTGT
Found at i:79733879 original size:15 final size:15
Alignment explanation
Indices: 79733859--79733888 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79733849 GTCTAACGAA
79733859 AATATTGAAGAAACT
1 AATATTGAAGAAACT
79733874 AATATTGAAGAAACT
1 AATATTGAAGAAACT
79733889 GGTCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (15 bp):
AATATTGAAGAAACT
Found at i:79738639 original size:14 final size:16
Alignment explanation
Indices: 79738620--79738652 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
79738610 GAGTTTGGAT
79738620 TTTTATT-AATT-TTA
1 TTTTATTAAATTATTA
79738634 TTTTATTAAATTATTA
1 TTTTATTAAATTATTA
79738650 TTT
1 TTT
79738653 ATTTTGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 4 0.24
16 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATTAAATTATTA
Found at i:79753078 original size:14 final size:14
Alignment explanation
Indices: 79753059--79753086 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79753049 TCCAATCAAA
79753059 AACTCATTGAGCAT
1 AACTCATTGAGCAT
79753073 AACTCATTGAGCAT
1 AACTCATTGAGCAT
79753087 TACGTAGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
AACTCATTGAGCAT
Found at i:79763972 original size:47 final size:47
Alignment explanation
Indices: 79763903--79763999 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
79763893 GCTTCCAATC
*
79763903 CAAAAGTAAAGCCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
1 CAAAAGTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
*
79763950 CAAAATTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
1 CAAAAGTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
79763997 CAA
1 CAA
79764000 TATTCGTCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (47 bp):
CAAAAGTAAAACCTCATCCTGACATGATTCAGGAGCATTAAGTATTT
Found at i:79772682 original size:16 final size:16
Alignment explanation
Indices: 79772651--79772687 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
79772641 ATGTGAAGAA
79772651 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
79772667 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
79772683 TATTA
1 TATTA
79772688 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:79772747 original size:29 final size:30
Alignment explanation
Indices: 79772682--79772747 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
79772672 TTAAAATTTA
79772682 TTATTAAAATAAAATTGAGATATTAAATAAT
1 TTATTAAAATAAAATT-AGATATTAAATAAT
*
79772713 TTATTAAAATAATAATT-TATATT-AATAAT
1 TTATTAAAATAA-AATTAGATATTAAATAAT
79772742 TTATTA
1 TTATTA
79772748 TATAACTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 12 0.36
30 5 0.15
31 12 0.36
32 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (30 bp):
TTATTAAAATAAAATTAGATATTAAATAAT
Found at i:79772748 original size:16 final size:16
Alignment explanation
Indices: 79772701--79772750 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
79772691 TAAAATTGAG
79772701 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
* *
79772718 AAAATAATAA--T-TT
1 ATATTAATAATTTATT
79772731 ATATTAATAATTTATT
1 ATATTAATAATTTATT
79772747 ATAT
1 ATAT
79772751 AACTAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
15 1 0.04
16 11 0.42
17 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:79784730 original size:12 final size:12
Alignment explanation
Indices: 79784713--79784745 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
79784703 CGGCCAGCCC
79784713 ATATTAATTTTT
1 ATATTAATTTTT
79784725 ATATT-ATTTTT
1 ATATTAATTTTT
79784736 ATA-TAATTTT
1 ATATTAATTTT
79784746 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:79784903 original size:30 final size:30
Alignment explanation
Indices: 79784867--79784929 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
79784857 CAACTTAACA
79784867 AGCAAATGCCTCTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAACAAAATT
* *
79784897 AGCAAATGTCTTTAAAATAATAACAAAATT
1 AGCAAATGCCTCTAAAATAATAACAAAATT
79784927 AGC
1 AGC
79784930 CATAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.25
Consensus pattern (30 bp):
AGCAAATGCCTCTAAAATAATAACAAAATT
Found at i:79784994 original size:22 final size:22
Alignment explanation
Indices: 79784969--79785031 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
79784959 CAATAACAAC
*
79784969 AAAATAGTAGCAACATAAT-AG
1 AAAATAGTAGCAAAATAATGAG
*
79784990 TAAAATGGTAGCAAAATAATGAG
1 -AAAATAGTAGCAAAATAATGAG
*
79785013 AAAATAATAAG-AAAATAAT
1 AAAATAGT-AGCAAAATAAT
79785032 ATTAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
22 31 0.89
23 4 0.11
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAATGAG
Found at i:79785038 original size:11 final size:11
Alignment explanation
Indices: 79785002--79785032 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
79784992 AAATGGTAGC
*
79785002 AAAATAATGAG
1 AAAATAATAAG
79785013 AAAATAATAAG
1 AAAATAATAAG
79785024 AAAATAATA
1 AAAATAATA
79785033 TTAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (11 bp):
AAAATAATAAG
Found at i:79785288 original size:15 final size:16
Alignment explanation
Indices: 79785263--79785293 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
79785253 TTAATTTTTG
79785263 TTAATTTTGGTTAATT
1 TTAATTTTGGTTAATT
79785279 TTAA-TTTGGTTAATT
1 TTAATTTTGGTTAATT
79785294 CAGTTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (16 bp):
TTAATTTTGGTTAATT
Found at i:79787536 original size:20 final size:18
Alignment explanation
Indices: 79787432--79787584 Score: 68
Period size: 20 Copynumber: 8.3 Consensus size: 18
79787422 TTCAATTATG
79787432 ATTAAACTTAATCACTTTAAT
1 ATTAAA-TTAAT-A-TTTAAT
79787453 ATTAAATTAATA--TAAT
1 ATTAAATTAATATTTAAT
** * * * *
79787469 ATTTTATCTACTAGATAAAC
1 ATTAAAT-TAATA-TTTAAT
79787489 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
79787506 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAA-TA-TTTAAT
** *
79787526 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
79787545 ATTAAGATTAGTA-TTAA-
1 ATTAA-ATTAATATTTAAT
*
79787562 ATTAAATTAA-ATTAAAT
1 ATTAAATTAATATTTAAT
79787579 ATTAAA
1 ATTAAA
79787585 CTATTAAAAT
Statistics
Matches: 100, Mismatches: 19, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
15 1 0.01
16 16 0.16
17 26 0.26
18 4 0.04
19 15 0.15
20 32 0.32
21 6 0.06
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:79787566 original size:73 final size:73
Alignment explanation
Indices: 79787440--79787583 Score: 184
Period size: 73 Copynumber: 2.0 Consensus size: 73
79787430 TGATTAAACT
* * ** *
79787440 TAATCACTTTAATATTAAATTAATATAATATTTTATCTACTAGATAAACATTAAATTAAATTTAA
1 TAATCACTTTAATATTAAATTAATAAAATATATTATAGACTAGATAAACATTAAATTAAATTAAA
79787505 TATTAAGA
66 TATTAAGA
* * *
79787513 TAATTACTTTAATATTAAATTAATAAAATACTATTA-AGATTAGTATTAA-ATTAAATTAAATTA
1 TAATCACTTTAATATTAAATTAATAAAATA-TATTATAGACTAG-ATAAACATTAAATTAAATTA
79787576 AATATTAA
64 AATATTAA
79787584 ACTATTAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
73 53 0.87
74 8 0.13
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (73 bp):
TAATCACTTTAATATTAAATTAATAAAATATATTATAGACTAGATAAACATTAAATTAAATTAAA
TATTAAGA
Found at i:79790048 original size:19 final size:18
Alignment explanation
Indices: 79790011--79790049 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
79790001 ATGTCTCAAT
*
79790011 TTTTGAAAGTTTTGATGA
1 TTTTGAAAGTTTTCATGA
79790029 TTTTGAAAGTTTTCATTGA
1 TTTTGAAAGTTTTCA-TGA
79790048 TT
1 TT
79790050 AATTCATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.54
Consensus pattern (18 bp):
TTTTGAAAGTTTTCATGA
Found at i:79790663 original size:40 final size:40
Alignment explanation
Indices: 79790599--79790709 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
79790589 CTATGTTTGC
* * *
79790599 CACTTAGTGTGCG-ATTTGAGATAGCTTCGGCTATATAAAG
1 CACTTAGTGTGTGAATTAGA-ATAGCTTCGGATATATAAAG
* ***
79790639 CACTTAGTGTGTGAATTGGAATAGCTTCGGATATATGTGG
1 CACTTAGTGTGTGAATTAGAATAGCTTCGGATATATAAAG
* *
79790679 CACTAAGTGTGTGATATTAAAATAGCTTCGG
1 CACTTAGTGTGTGA-ATTAGAATAGCTTCGG
79790710 TTTAATGTGA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
40 41 0.68
41 19 0.32
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (40 bp):
CACTTAGTGTGTGAATTAGAATAGCTTCGGATATATAAAG
Found at i:79790718 original size:41 final size:43
Alignment explanation
Indices: 79790638--79790739 Score: 113
Period size: 44 Copynumber: 2.4 Consensus size: 43
79790628 GCTATATAAA
* **
79790638 GCACTTAGTGTGTGA-ATTGGAATAGCTTCGGATATA-TG-TG
1 GCACTAAGTGTGTGATATTAAAATAGCTTCGGATATAGTGATG
*
79790678 GCACTAAGTGTGTGATATTAAAATAGCTTCGG-TTTAATGTGATG
1 GCACTAAGTGTGTGATATTAAAATAGCTTCGGATAT-A-GTGATG
*
79790722 GCACTAAGTGTGCGATAT
1 GCACTAAGTGTGTGATAT
79790740 AGTCATAGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
40 16 0.31
41 15 0.29
43 2 0.04
44 19 0.37
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (43 bp):
GCACTAAGTGTGTGATATTAAAATAGCTTCGGATATAGTGATG
Found at i:79795602 original size:93 final size:93
Alignment explanation
Indices: 79795490--79795661 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
79795480 GCCCATAAGT
* *
79795490 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79795555 CGAGCTCGGATGCCTCGTTACATCTCTC
66 CGAGCTCGGATGCCTCGTTACATCTCTC
*
79795583 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
79795648 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79795662 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTCGTTACATCTCTC
Found at i:79795657 original size:46 final size:45
Alignment explanation
Indices: 79795482--79795657 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 45
79795472 TGTAACCCGC
*
79795482 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCAT
* *
79795528 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTCG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CTTCGCAT
* *** *
79795574 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCAT
*
79795621 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79795658 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 73 0.66
47 36 0.32
48 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCAT
Found at i:79797616 original size:15 final size:15
Alignment explanation
Indices: 79797562--79797641 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
79797552 CAAAGATAAC
*
79797562 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
79797576 AATAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
79797591 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
79797606 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
79797621 AATAGATCCAGGATA
1 AAGAAATCCAGAATA
79797636 AAGAAA
1 AAGAAA
79797642 CCCAAGATAT
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 8 0.16
15 42 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.15, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:79797650 original size:15 final size:15
Alignment explanation
Indices: 79797573--79797650 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
79797563 AGAAAACCGA
*
79797573 ATAAATAAATCCAAG
1 ATAAAGAAATCCAAG
* *
79797588 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
79797602 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
79797617 AATAAATAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79797633 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79797648 ATA
1 ATA
79797651 TGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 4 0.08
15 42 0.86
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.14, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79800731 original size:93 final size:93
Alignment explanation
Indices: 79800619--79800790 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
79800609 GCCCATAAGT
* *
79800619 GAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
79800684 CGAGCTCGGATGCCTCGTTACATCTCTC
66 CGAGCTCGGATGCCTCGTTACATCTCTC
** *
79800712 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
79800777 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
79800791 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTCGTTACATCTCTC
Found at i:79800786 original size:46 final size:45
Alignment explanation
Indices: 79800611--79800786 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
79800601 TGTAACCCGC
* *
79800611 CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCAT
* * *
79800657 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTCG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA--CTTCGCAT
* *** *
79800703 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCAT
*
79800750 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79800787 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 35 0.32
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCAT
Found at i:79804028 original size:169 final size:169
Alignment explanation
Indices: 79803748--79804084 Score: 530
Period size: 169 Copynumber: 2.0 Consensus size: 169
79803738 TACATTTCAT
* *
79803748 CTCTTCAACAAGTTTAGTAATAAGCATAACGGCCCTATTGTTCCGATGAAGAGAAGAACCTATGA
1 CTCTTCAAAAAGTTTAGTAATAAGCATAACGGCCCTATTGTTCCGATAAAGAGAAGAACCTATGA
* *
79803813 TTAGCTTTTCTGGAAATGTAACACCCCAAACCCCGCCTGGAGGTTATGGCTAAATCTGGCGATGT
66 TTAGCTTTTCTGGAAATGTAACACCCCAAACCCCGCCTGAAGGTTATGGCCAAATCTGGCGATGT
** *
79803878 CACGTGAGAGTGTTTTTGAAAATGCATTGACTTTAAAAC
131 CACGTGAGAGTGTTTTTGAAAACACATTGACCTTAAAAC
* **
79803917 CTCTTCAAAAAGTTTAGTAATGAGCATAACGGCTTTATTGTTCCGATAAAGAGAAGAACCTATGA
1 CTCTTCAAAAAGTTTAGTAATAAGCATAACGGCCCTATTGTTCCGATAAAGAGAAGAACCTATGA
* *** *
79803982 TTAGCTTTTTTGGAAATGTAACACCCCAAACTTGGCCTGAAGGTTATGGCCGAATCTGGCGATGT
66 TTAGCTTTTCTGGAAATGTAACACCCCAAACCCCGCCTGAAGGTTATGGCCAAATCTGGCGATGT
*
79804047 CATGTGAGAGTGTTTTTGAAAACACATTGACCTTAAAA
131 CACGTGAGAGTGTTTTTGAAAACACATTGACCTTAAAA
79804085 TCATCCCAAT
Statistics
Matches: 152, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
169 152 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (169 bp):
CTCTTCAAAAAGTTTAGTAATAAGCATAACGGCCCTATTGTTCCGATAAAGAGAAGAACCTATGA
TTAGCTTTTCTGGAAATGTAACACCCCAAACCCCGCCTGAAGGTTATGGCCAAATCTGGCGATGT
CACGTGAGAGTGTTTTTGAAAACACATTGACCTTAAAAC
Found at i:79806597 original size:14 final size:14
Alignment explanation
Indices: 79806580--79806606 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79806570 TAAAAATTTA
79806580 AAACCTTAAACCCT
1 AAACCTTAAACCCT
79806594 AAACCTTAAACCC
1 AAACCTTAAACCC
79806607 AAATCCCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACCTTAAACCCT
Found at i:79807420 original size:869 final size:870
Alignment explanation
Indices: 79805734--79807433 Score: 2891
Period size: 869 Copynumber: 2.0 Consensus size: 870
79805724 GAAACCGATT
* * *
79805734 ACCCAAATCCTACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCAGAACTACTGGAACTC
1 ACCCAAATCCCACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCACAACCACTGGAACTC
* * * * *
79805799 TAACAAAGAGCCGAGGAAAGTAAAACTCCCTCACTCGTGCAGGGATTCAATCACAGGACCTCCAG
66 TAACAAAGAGCCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCAATCACAAGACCTCCAG
* *
79805864 TATATAAACAAACTACTTAACCTCCAGACCAGCAGGCCCATTCTAATATGAAATTACAAGTAACT
131 TATACAAACAAACTACTTAACCTCCAGACCAGCAGGCACATTCTAATATGAAATTACAAGTAACT
* *
79805929 TAATATAAGCCTGCTGACTAGATGTTAAGGCTTAATTCAGGAAAAAGCCAAAATTTGCCAAAGTC
196 TAATATAAACCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCCAAAATTTGCCAAAGTC
* *
79805994 ATGGCTTGAATTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCGGATATTGTGT
261 ATGGCTTGAACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGT
* * *
79806059 GCCAATGAATCATAGAGACATATTTAAAAACTTAGGGCGTTACTGAAAATTTCCAAACGAACAAT
326 GCCAATAAATCACAGAGACATATTTAAAAACTTAGGGCGTTACAGAAAATTTCCAAACGAACAAT
79806124 TTTAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCGTTGA
391 TTTAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCGTTGA
*
79806189 GTACATTGAATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAATTACTCTAG
456 GTACATTGAATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAACTACTCTAG
79806254 AAGGAATGTTTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAA
521 AAGGAATGTTTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAA
*
79806319 TTATACTCCTACCTATTATCTGCAAAAAATGAGCTATCTATCTATATGAGACCTTATGTACAAGA
586 TTATACTCCTACCTATTATCTGCAAAAAATAAGCTATCTATCTATATGAGACCTTATGTACAAGA
79806384 TATGACAGTCTGTCATGACTATCCTATGTGTATGATTCTGCAATGGGGAATTCACTCTCATGAGC
651 TATGACAGTCTGTCATGACTATCCTATGTGTATGATTCTGCAATGGGGAATTCACTCTCATGAGC
* *
79806449 AAAACCATAAACCCCCTAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATGGCCCTT
716 AAAACCATAAACCCCCCAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATAGCCCTT
* * *
79806514 CAATAATAAAAACCTTAAACCTTAAAACCCTAAACCCTAAATCC-AAACCATAAATATAAAAATT
781 CAACAATAAAAACCTTAAACCTTAAAACCATAAACCCTAAACCCTAAACCATAAATATAAAAATT
79806578 TAAAACCTTAAACCCTAAACCTTAA
846 TAAAACCTTAAACCCTAAACCTTAA
**
79806603 ACCCAAATCCCACTAATTCTCATCCTAACCACCTGCTACCCAGAATCCCACAACCACTGGAACTC
1 ACCCAAATCCCACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCACAACCACTGGAACTC
* * *
79806668 TAACACAGAGTCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCGATCACAAGACCTCCAG
66 TAACAAAGAGCCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCAATCACAAGACCTCCAG
* * *
79806733 TATACAAGCACACTACTTAACCTCCAGACTAGCAGGCACATTCTAATATGAAATTACAAGTAACT
131 TATACAAACAAACTACTTAACCTCCAGACCAGCAGGCACATTCTAATATGAAATTACAAGTAACT
79806798 TAATATAAACCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCCAAAATTTGCCAAAGTC
196 TAATATAAACCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCCAAAATTTGCCAAAGTC
79806863 ATGGCTTGAACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGT
261 ATGGCTTGAACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGT
* *
79806928 GCCAATAAATCACAGAGACATATTTAAAAACTTGGGGCGTTACAGGAAATTTCCAAACGAACAAT
326 GCCAATAAATCACAGAGACATATTTAAAAACTTAGGGCGTTACAGAAAATTTCCAAACGAACAAT
* *
79806993 TTTAACGAAATCTTTTAATTTCTTATTTTACTGTGTTCAACTCTATTTATTTCTATATCCGTTGA
391 TTTAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCGTTGA
* *
79807058 GTACATTGAATGTACAAAAATGGTTATAGCAGAGTTTCTGTTATTCGTATTAACAACTACTCTAG
456 GTACATTGAATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAACTACTCTAG
* * *
79807123 AAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTTAGA
521 AAGGAATGTTTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAA
** * * * * *
79807188 TTATGGTTCTACCTATTATCTGCCAAAAATAATCTATCTATTTATATGAGTCCTTATGTACAAGA
586 TTATACTCCTACCTATTATCTGCAAAAAATAAGCTATCTATCTATATGAGACCTTATGTACAAGA
*
79807253 TATGACAGTCTGTCATGACTATCTTATGTGTATGATTCTGCAATGGGGAATTCACTCTCATGAGC
651 TATGACAGTCTGTCATGACTATCCTATGTGTATGATTCTGCAATGGGGAATTCACTCTCATGAGC
* * *
79807318 CAAACCCTAAACCCCCCAAACCATAACACTAACTCTAACACCCAAATCTTAAAACCATAGCCCTT
716 AAAACCATAAACCCCCCAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATAGCCCTT
* *
79807383 GAACCATAAAAACCTTAAACCTTAAAA-CATAAAACCCTAAACCCTAAACCA
781 CAACAATAAAAACCTTAAACCTTAAAACCAT-AAACCCTAAACCCTAAACCA
79807434 AAACCACAAA
Statistics
Matches: 775, Mismatches: 54, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
868 2 0.00
869 767 0.99
870 6 0.01
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (870 bp):
ACCCAAATCCCACTAATTCTCATCCTAACCACCCACTACCCAGAATCCCACAACCACTGGAACTC
TAACAAAGAGCCGAGCAAAATAAAACTCCCTCACTCGCGCAAGGATTCAATCACAAGACCTCCAG
TATACAAACAAACTACTTAACCTCCAGACCAGCAGGCACATTCTAATATGAAATTACAAGTAACT
TAATATAAACCTGCTGACTAGATGTTAAGGATTAATTCAGGAAAAAGCCAAAATTTGCCAAAGTC
ATGGCTTGAACTTAGGACCTCACACACACACCCAAAACACTTAACCACTGAAGCAGATATTGTGT
GCCAATAAATCACAGAGACATATTTAAAAACTTAGGGCGTTACAGAAAATTTCCAAACGAACAAT
TTTAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATTTATTTCTATATCCGTTGA
GTACATTGAATGTACAAAAATGGCTATAGCAGAGTTTCTGTTATTCATATTAACAACTACTCTAG
AAGGAATGTTTTTATGCAGTGCTAACGATTTAATAACTATCTTTGTAGCTTCAGAATATTTCAAA
TTATACTCCTACCTATTATCTGCAAAAAATAAGCTATCTATCTATATGAGACCTTATGTACAAGA
TATGACAGTCTGTCATGACTATCCTATGTGTATGATTCTGCAATGGGGAATTCACTCTCATGAGC
AAAACCATAAACCCCCCAAACCATAACACTAACCCTAACACCCAAATCTTAAAACCATAGCCCTT
CAACAATAAAAACCTTAAACCTTAAAACCATAAACCCTAAACCCTAAACCATAAATATAAAAATT
TAAAACCTTAAACCCTAAACCTTAA
Found at i:79807473 original size:13 final size:13
Alignment explanation
Indices: 79807455--79807479 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79807445 ATAAAACTTT
79807455 AAAACCCTAACCA
1 AAAACCCTAACCA
79807468 AAAACCCTAACC
1 AAAACCCTAACC
79807480 CTTAAACTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAACCCTAACCA
Found at i:79807525 original size:14 final size:14
Alignment explanation
Indices: 79807493--79807544 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
79807483 AAACTATAAC
* *
79807493 CCCTAACCCATAAA
1 CCCTAAACCATGAA
* *
79807507 TCCTAAATCATGAA
1 CCCTAAACCATGAA
79807521 CCCTAAAACCATGAA
1 CCCT-AAACCATGAA
*
79807536 CCATAAACC
1 CCCTAAACC
79807545 TAACTATATA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.44, C:0.35, G:0.04, T:0.17
Consensus pattern (14 bp):
CCCTAAACCATGAA
Found at i:79807627 original size:24 final size:22
Alignment explanation
Indices: 79807599--79807659 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
79807589 CTAAACCTAC
79807599 CCTTAAACCTTAAAAATAATAAAA
1 CCTTAAACCTTAAAAA-AAT-AAA
* * *
79807623 CCTTAAGCCTTTAAAACATAAA
1 CCTTAAACCTTAAAAAAATAAA
* *
79807645 CCCTAAACCATAAAA
1 CCTTAAACCTTAAAA
79807660 CCCTAACCCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 14 0.47
23 2 0.07
24 14 0.47
ACGTcount: A:0.52, C:0.23, G:0.02, T:0.23
Consensus pattern (22 bp):
CCTTAAACCTTAAAAAAATAAA
Found at i:79807692 original size:41 final size:40
Alignment explanation
Indices: 79807636--79807720 Score: 109
Period size: 41 Copynumber: 2.1 Consensus size: 40
79807626 TAAGCCTTTA
* * *
79807636 AAACATAAACCCTAAACCATAAAAC-CCTAACCCTAACCAT
1 AAACATAAACACTAAACCATAAAACTAC-AACCATAACCAT
*
79807676 AAACACTAAACACTAAACCTTAAAACTACAACCATAACCAT
1 AAACA-TAAACACTAAACCATAAAACTACAACCATAACCAT
79807717 AAAC
1 AAAC
79807721 CCTTAGACCA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
40 5 0.13
41 33 0.85
42 1 0.03
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (40 bp):
AAACATAAACACTAAACCATAAAACTACAACCATAACCAT
Found at i:79807732 original size:21 final size:21
Alignment explanation
Indices: 79807706--79807746 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
79807696 TAAAACTACA
79807706 ACCATA-ACCATAAACCCTTAG
1 ACCATAGACCAT-AACCCTTAG
79807727 ACCATAGACCATAACCCTTA
1 ACCATAGACCATAACCCTTA
79807747 ACCCTTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.34, G:0.05, T:0.20
Consensus pattern (21 bp):
ACCATAGACCATAACCCTTAG
Found at i:79807939 original size:7 final size:7
Alignment explanation
Indices: 79807929--79808043 Score: 53
Period size: 7 Copynumber: 16.9 Consensus size: 7
79807919 CACTAAACAC
79807929 TAAACCA
1 TAAACCA
*
79807936 TAAACTA
1 TAAACCA
*
79807943 TAAACCC
1 TAAACCA
* *
79807950 CAAACTA
1 TAAACCA
79807957 T-AACCA
1 TAAACCA
*
79807963 TTAAACTA
1 -TAAACCA
*
79807971 TAGACCA
1 TAAACCA
*
79807978 T-AACCC
1 TAAACCA
*
79807984 T-AACCT
1 TAAACCA
79807990 TAATACC-
1 TAA-ACCA
79807997 TAAACC-
1 TAAACCA
*
79808003 -CAACCA
1 TAAACCA
79808009 TAAACCA
1 TAAACCA
* *
79808016 TAGACCT
1 TAAACCA
*
79808023 TAACATCA
1 TAA-ACCA
79808031 TAAACCA
1 TAAACCA
79808038 TAAACC
1 TAAACC
79808044 CAATCTTATA
Statistics
Matches: 79, Mismatches: 22, Indels: 14
0.69 0.19 0.12
Matches are distributed among these distances:
5 4 0.05
6 16 0.20
7 47 0.59
8 12 0.15
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:79807946 original size:14 final size:14
Alignment explanation
Indices: 79807929--79807980 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
79807919 CACTAAACAC
79807929 TAAACCATAAACTA
1 TAAACCATAAACTA
**
79807943 TAAACCCCAAACTA
1 TAAACCATAAACTA
79807957 T-AACCATTAAACTA
1 TAAACCA-TAAACTA
*
79807971 TAGACCATAA
1 TAAACCATAA
79807981 CCCTAACCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
13 4 0.13
14 23 0.74
15 4 0.13
ACGTcount: A:0.52, C:0.25, G:0.02, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACTA
Found at i:79808094 original size:20 final size:22
Alignment explanation
Indices: 79808069--79808108 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
79808059 AACCCAACTA
79808069 TAACCCTAAA-A-TCCTAACCC
1 TAACCCTAAACAGTCCTAACCC
79808089 TAACCCTAAACAGTCCTAAC
1 TAACCCTAAACAGTCCTAAC
79808109 AACAAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 1 0.06
22 7 0.39
ACGTcount: A:0.40, C:0.38, G:0.03, T:0.20
Consensus pattern (22 bp):
TAACCCTAAACAGTCCTAACCC
Found at i:79808543 original size:41 final size:38
Alignment explanation
Indices: 79808493--79808593 Score: 111
Period size: 34 Copynumber: 2.7 Consensus size: 38
79808483 CCCCTAAATA
*
79808493 CAACATTAAACCCTAAACTTTAAAATCATAAACCATAAACC
1 CAACCTTAAA-CCTAAAC--TAAAATCATAAACCATAAACC
*
79808534 CAACCTTAAA-CT---CTAAAATCCTAAACCATAAACC
1 CAACCTTAAACCTAAACTAAAATCATAAACCATAAACC
*
79808568 CAACCCTAAACTCTAAACTAAAATCA
1 CAACCTTAAAC-CTAAACTAAAATCA
79808594 AGATATACTT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
34 29 0.57
36 3 0.06
39 10 0.20
41 9 0.18
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.21
Consensus pattern (38 bp):
CAACCTTAAACCTAAACTAAAATCATAAACCATAAACC
Found at i:79808544 original size:34 final size:34
Alignment explanation
Indices: 79808501--79808584 Score: 141
Period size: 34 Copynumber: 2.5 Consensus size: 34
79808491 TACAACATTA
*
79808501 AACCCTAAACTTTAAAATCATAAACCATAAACCC
1 AACCCTAAACTCTAAAATCATAAACCATAAACCC
* *
79808535 AACCTTAAACTCTAAAATCCTAAACCATAAACCC
1 AACCCTAAACTCTAAAATCATAAACCATAAACCC
79808569 AACCCTAAACTCTAAA
1 AACCCTAAACTCTAAA
79808585 CTAAAATCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (34 bp):
AACCCTAAACTCTAAAATCATAAACCATAAACCC
Found at i:79808616 original size:16 final size:15
Alignment explanation
Indices: 79808595--79808647 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
79808585 CTAAAATCAA
79808595 GATATACTTAGAATGG
1 GATATACTTAG-ATGG
** *
79808611 GATATACCCAGATCGA
1 GATATACTTAGAT-GG
*
79808627 GATATACTTATATGG
1 GATATACTTAGATGG
79808642 GATATA
1 GATATA
79808648 AACGAACCAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
15 9 0.31
16 20 0.69
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (15 bp):
GATATACTTAGATGG
Found at i:79809496 original size:23 final size:23
Alignment explanation
Indices: 79809444--79809497 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
79809434 CAAACAGAAA
*
79809444 CCAAAACATAAGCATAACATTAG
1 CCAAAACCTAAGCATAACATTAG
* *
79809467 CCCAAACCTAAGCATAATATTAG
1 CCAAAACCTAAGCATAACATTAG
*
79809490 TCAAAACC
1 CCAAAACC
79809498 GAGAACCACA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (23 bp):
CCAAAACCTAAGCATAACATTAG
Found at i:79810271 original size:34 final size:34
Alignment explanation
Indices: 79810223--79810302 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
79810213 TATATGCTGA
* *
79810223 AATTTTG-AAAGTTATTAGATTTTTCTAGACACT
1 AATTTTGTTAAGTTATTAGATATTTCTAGACACT
**
79810256 AATTTTGTTAAGTTATTAGATATTTCTAGATGCT
1 AATTTTGTTAAGTTATTAGATATTTCTAGACACT
*
79810290 AATTTTATTAAGT
1 AATTTTGTTAAGT
79810303 AAAAGTGTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 7 0.17
34 34 0.83
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (34 bp):
AATTTTGTTAAGTTATTAGATATTTCTAGACACT
Found at i:79810874 original size:72 final size:73
Alignment explanation
Indices: 79810809--79810950 Score: 189
Period size: 72 Copynumber: 2.0 Consensus size: 73
79810799 AATTATGAAT
* *
79810809 TATGTGAATATTTG-AAGGTATATTGATTGGAAA-TTAAAAGTGATTTGAATTGAATCAAATTGA
1 TATGTGAATATTTGAAAGGTATATTGATTGAAAAGTGAAAAGTGATTTGAATTGAATCAAATTGA
79810872 ATTGAAAA
66 ATTGAAAA
* * * * * *
79810880 TATGTGATTATTTGAAATGTATATTGATTGAAAAGTGAACAGTGATTTGAATTTGATTGAAAGTG
1 TATGTGAATATTTGAAAGGTATATTGATTGAAAAGTGAAAAGTGATTTGAA-TTGAATCAAATTG
79810945 AATTGA
65 AATTGA
79810951 GAAACTGAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 13 0.22
72 17 0.28
73 14 0.23
74 16 0.27
ACGTcount: A:0.39, C:0.01, G:0.21, T:0.38
Consensus pattern (73 bp):
TATGTGAATATTTGAAAGGTATATTGATTGAAAAGTGAAAAGTGATTTGAATTGAATCAAATTGA
ATTGAAAA
Found at i:79813861 original size:16 final size:16
Alignment explanation
Indices: 79813840--79813883 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
79813830 GTGAGTACTT
79813840 TTATAGTGAATTGAAA
1 TTATAGTGAATTGAAA
79813856 TTATAGTTG-ATTGAAA
1 TTATAG-TGAATTGAAA
*
79813872 TT-TATTGAATTG
1 TTATAGTGAATTG
79813884 GTATATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 2 0.08
15 6 0.24
16 15 0.60
17 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (16 bp):
TTATAGTGAATTGAAA
Found at i:79816989 original size:56 final size:56
Alignment explanation
Indices: 79816920--79817029 Score: 139
Period size: 56 Copynumber: 2.0 Consensus size: 56
79816910 TTGCATCTTC
* * *
79816920 GATGTCTCACACACTATGTACCATACTCGATACCTCGCACGCTAAGTGCTATTTTG
1 GATGTCTCACACACTAAGTACCATACTCGATACCTCGCACACTAAGTGCCATTTTG
* * * * * *
79816976 GATGTTTCGCACACTAAGTGCCATCCTCGATACTTTGCACACTAAGTGCCATTT
1 GATGTCTCACACACTAAGTACCATACTCGATACCTCGCACACTAAGTGCCATTT
79817030 ATATATATAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (56 bp):
GATGTCTCACACACTAAGTACCATACTCGATACCTCGCACACTAAGTGCCATTTTG
Found at i:79821065 original size:43 final size:43
Alignment explanation
Indices: 79821017--79821125 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 43
79821007 TCCTAGATAT
* * * *
79821017 GGTCTTACATGTTATCACATATCAATGCTACTGTGCCACG-CAG
1 GGTCTTACATGTAATCACATATCAATGCCAATGTCCCA-GACAG
* * *
79821060 GGTCTTACACGAAATCACA-ATACAATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCACATAT-CAATGCCAATGTCCCAGACAG
*
79821103 GGTCTTACATGTAATCATATATC
1 GGTCTTACATGTAATCACATATC
79821126 GAGCCGATGC
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
42 3 0.06
43 48 0.91
44 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCAATGCCAATGTCCCAGACAG
Found at i:79821196 original size:50 final size:49
Alignment explanation
Indices: 79821084--79821260 Score: 162
Period size: 50 Copynumber: 3.6 Consensus size: 49
79821074 TCACAATACA
* * *
79821084 ATGCCAATGTCCCAGACATGGTCTTACA-TG--TAATCATATATCGAGCCG
1 ATGCC-ATATCCCAGACATGGTCTTACACTGACT-CTCTTATATCGAGCCG
* * * *
79821132 ATGCCATGTTCCAGACTTGGTCTTACACTGACTCTCTTATATCGAGGCTG
1 ATGCCATATCCCAGACATGGTCTTACACTGACTCTCTTATATCGA-GCCG
* * * * *
79821182 ATGCCATATCCCAGACATGGTCTTACACTGGCTCTCCTCTTTCCGTGCCG
1 ATGCCATATCCCAGACATGGTCTTACACTGACTCTCTTATAT-CGAGCCG
* * *
79821232 ATGCCATGTCCCAAATATGGTCTTACACT
1 ATGCCATATCCCAGACATGGTCTTACACT
79821261 AGCTCACATG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
47 20 0.19
48 7 0.07
49 10 0.09
50 68 0.64
51 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.31
Consensus pattern (49 bp):
ATGCCATATCCCAGACATGGTCTTACACTGACTCTCTTATATCGAGCCG
Found at i:79826892 original size:29 final size:29
Alignment explanation
Indices: 79826849--79826934 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 29
79826839 CATGAACATG
* *
79826849 AATGTGA-CTGGGCCTAACGGGTCATATA
1 AATGTGATTTGGGCCTAACGGGCCATATA
*
79826877 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAACGGGCCATATA
* * * *
79826906 CAGGTGATTTGGACCTAAAGGGGCCATAT
1 AATGTGATTTGGGCCT-AACGGGCCATAT
79826935 GAATATAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 7 0.14
29 31 0.63
30 11 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAACGGGCCATATA
Found at i:79828047 original size:17 final size:18
Alignment explanation
Indices: 79828014--79828048 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79828004 TTTTAAGAAG
79828014 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
79828032 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
79828049 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:79843223 original size:21 final size:20
Alignment explanation
Indices: 79843199--79843250 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
79843189 TTATGCCACA
79843199 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
79843220 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
79843240 TTAGTATTTTA
1 TCAGTATTTTA
79843251 ATTTGGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:79846534 original size:43 final size:43
Alignment explanation
Indices: 79846440--79846598 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
79846430 GGTTATCGAG
* * * *
79846440 ATGTGATTACTTGTAAGACCATGTCTGGGATATTGGCATTGTA
1 ATGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTA
* *
79846483 TTGTGATTACGTGTAAGACCATATCTGGGACATTGGTATCGTTA
1 ATGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCG-TA
* * * * * *
79846527 AT-CGATTATGTGTAAGACCTTGTCAGGGACAGTGGCATCG-A
1 ATGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTA
* * *
79846568 TATGTGATAACATGTAAGACCATATATGGGA
1 -ATGTGATTACGTGTAAGACCATATCTGGGA
79846599 TACGACATTG
Statistics
Matches: 91, Mismatches: 22, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 85 0.93
44 3 0.03
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTA
Found at i:79848076 original size:27 final size:27
Alignment explanation
Indices: 79848038--79848091 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
79848028 CGAATTAAGT
79848038 TAATATACCCTACAGGTTTGACACGGC
1 TAATATACCCTACAGGTTTGACACGGC
79848065 TAATATACCCTACAGGTTTGACACGGC
1 TAATATACCCTACAGGTTTGACACGGC
79848092 CTAGACATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
TAATATACCCTACAGGTTTGACACGGC
Found at i:79855983 original size:34 final size:35
Alignment explanation
Indices: 79855924--79855991 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 35
79855914 ATAAAGAGAA
*
79855924 CTCTATGAAAATTAGGGTTTCGTATTT-GGGTTTG
1 CTCTATGAAAATTAGAGTTTCGTATTTAGGGTTTG
* * *
79855958 CTCTATGAGAGTTAGAGTTTTGTATTTAGGGTTT
1 CTCTATGAAAATTAGAGTTTCGTATTTAGGGTTT
79855992 TAGGCAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 23 0.79
35 6 0.21
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.46
Consensus pattern (35 bp):
CTCTATGAAAATTAGAGTTTCGTATTTAGGGTTTG
Found at i:79860044 original size:34 final size:35
Alignment explanation
Indices: 79859983--79860049 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
79859973 CAAACACCAG
*
79859983 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
79860018 AAAATCTTTTCCAG-AAATCATTTTACAGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
79860050 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:79860046 original size:14 final size:15
Alignment explanation
Indices: 79860018--79860057 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
79860008 ACAGAAAAGT
*
79860018 AAAATC-TTTTCCAG
1 AAAATCATTTTACAG
79860032 -AAATCATTTTACAG
1 AAAATCATTTTACAG
79860046 AAAAT-ATTTTAC
1 AAAATCATTTTAC
79860058 TGGCAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 5 0.22
14 14 0.61
15 4 0.17
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (15 bp):
AAAATCATTTTACAG
Found at i:79872843 original size:3 final size:3
Alignment explanation
Indices: 79872835--79872861 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
79872825 TAAGGCTTCC
79872835 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
79872862 TAGCAGGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:79881760 original size:8 final size:8
Alignment explanation
Indices: 79881747--79881801 Score: 67
Period size: 8 Copynumber: 6.8 Consensus size: 8
79881737 TAAATAATAT
79881747 TAAAATTA
1 TAAAATTA
*
79881755 TAAAATATT
1 TAAAAT-TA
*
79881764 TAGAAAATA
1 TA-AAATTA
79881773 -AAAATTA
1 TAAAATTA
79881780 TAAAATTA
1 TAAAATTA
79881788 TAAAATTA
1 TAAAATTA
79881796 TAAAAT
1 TAAAAT
79881802 ATGCCACTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
7 5 0.12
8 28 0.70
9 4 0.10
10 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (8 bp):
TAAAATTA
Found at i:79896697 original size:3 final size:3
Alignment explanation
Indices: 79896689--79896717 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
79896679 ACATATGTAT
79896689 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
79896718 TATTATGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:79898318 original size:15 final size:15
Alignment explanation
Indices: 79898298--79898327 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79898288 CCTCAGTTAC
79898298 ATTTTAGTCACTTAT
1 ATTTTAGTCACTTAT
79898313 ATTTTAGTCACTTAT
1 ATTTTAGTCACTTAT
79898328 GTTTAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (15 bp):
ATTTTAGTCACTTAT
Found at i:79899975 original size:19 final size:20
Alignment explanation
Indices: 79899947--79899985 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
79899937 TCTTATTTTT
79899947 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
79899966 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
79899986 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:79900003 original size:25 final size:23
Alignment explanation
Indices: 79899966--79900011 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
79899956 TTTGTTTTAA
*
79899966 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
79899989 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
79900012 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:79900165 original size:16 final size:16
Alignment explanation
Indices: 79900144--79900174 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79900134 ATTTTTTATG
79900144 GGCCCGACCCGAACCT
1 GGCCCGACCCGAACCT
*
79900160 GGCCCGGCCCGAACC
1 GGCCCGACCCGAACC
79900175 CAGCCCATGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.52, G:0.29, T:0.03
Consensus pattern (16 bp):
GGCCCGACCCGAACCT
Found at i:79901349 original size:75 final size:76
Alignment explanation
Indices: 79901265--79901412 Score: 271
Period size: 75 Copynumber: 2.0 Consensus size: 76
79901255 AGTTTTAGTA
79901265 ATTATTTTTTCAATGTTTATTTTAATTATAATATAGAAAGTTGAGGCTTAGAGCTTAATCAATTT
1 ATTATTTTTTCAATGTTTATTTTAATTATAATATAGAAAGTTGAGGCTTAGAGCTTAATCAATTT
*
79901330 TTTTACCCGTG
66 CTTTACCCGTG
*
79901341 ATTA-TTTTTCAATGTTTATTTTAATTATAATATCGAAAGTTGAGGCTTAGAGCTTAATCAATTT
1 ATTATTTTTTCAATGTTTATTTTAATTATAATATAGAAAGTTGAGGCTTAGAGCTTAATCAATTT
79901405 CTTTACCC
66 CTTTACCC
79901413 TTTGTCACGC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
75 66 0.94
76 4 0.06
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (76 bp):
ATTATTTTTTCAATGTTTATTTTAATTATAATATAGAAAGTTGAGGCTTAGAGCTTAATCAATTT
CTTTACCCGTG
Found at i:79907300 original size:33 final size:35
Alignment explanation
Indices: 79907262--79907359 Score: 91
Period size: 33 Copynumber: 2.9 Consensus size: 35
79907252 ATAGTTATAT
79907262 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTACTTAA
* *
79907295 TTAAAT-TTTATAA-ATAATTAATATTTATTACTTAA
1 TTAAATATTTAAAATATAATT--TATATATTACTTAA
*
79907330 --AAATATTTAAAATTTATATTTTATATATTA
1 TTAAATATTTAAAA--TATAATTTATATATTA
79907360 AAATATTAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.13
35 11 0.21
37 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTACTTAA
Found at i:79909050 original size:18 final size:17
Alignment explanation
Indices: 79909008--79909051 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
79908998 ATATGTAAAT
* *
79909008 AATAACAATAATATTAA
1 AATAATAATAATATGAA
79909025 AATAAATAATAATAGTGAA
1 AAT-AATAATAATA-TGAA
79909044 AATAATAA
1 AATAATAA
79909052 GTATAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.13
18 14 0.61
19 6 0.26
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (17 bp):
AATAATAATAATATGAA
Found at i:79909098 original size:13 final size:13
Alignment explanation
Indices: 79909072--79909179 Score: 52
Period size: 13 Copynumber: 8.5 Consensus size: 13
79909062 GTATTAAGAG
*
79909072 TATACATATAAAAA
1 TATA-ATATTAAAA
79909086 TATAATATTAAAA
1 TATAATATTAAAA
*
79909099 -AT-ATA-T-ATA
1 TATAATATTAAAA
*
79909108 CATAATA-TAAAA
1 TATAATATTAAAA
*
79909120 TAT-AT-TTATAA
1 TATAATATTAAAA
*
79909131 TATAGTATTAAAA
1 TATAATATTAAAA
* *
79909144 TAT-ATACATAATA
1 TATAATA-TTAAAA
79909157 TATACATATTAGAAA
1 TATA-ATATTA-AAA
79909172 TAATAATA
1 T-ATAATA
79909180 ATGTTAAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
9 2 0.03
10 3 0.04
11 16 0.23
12 9 0.13
13 23 0.32
14 6 0.08
15 9 0.13
16 3 0.04
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (13 bp):
TATAATATTAAAA
Found at i:79909105 original size:24 final size:23
Alignment explanation
Indices: 79909077--79909177 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 23
79909067 AAGAGTATAC
79909077 ATATAAAAATATAATATTAAAA-
1 ATATAAAAATATAATATTAAAAT
* * *
79909099 ATATATATACATAATA-TAAAAT
1 ATATAAAAATATAATATTAAAAT
* * *
79909121 ATATTTATAATATAGTATTAAAAT
1 ATA-TAAAAATATAATATTAAAAT
79909145 ATATACATAATATATACATATTAGAAAT
1 ATATA-A-AA-ATATA-ATATTA-AAAT
79909173 A-ATAA
1 ATATAA
79909178 TAATGTTAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
21 5 0.08
22 16 0.27
23 8 0.14
24 10 0.17
25 1 0.02
26 6 0.10
27 8 0.14
28 5 0.08
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (23 bp):
ATATAAAAATATAATATTAAAAT
Found at i:79909123 original size:42 final size:40
Alignment explanation
Indices: 79909077--79909158 Score: 94
Period size: 42 Copynumber: 1.9 Consensus size: 40
79909067 AAGAGTATAC
79909077 ATATA-AAAATATAATATTAAAAATATATATACATAATATAAA
1 ATATATAAAATATAATATT--AAA-ATATATACATAATATAAA
* *
79909119 ATATATTTATAATATAGTATTAAAATATATACATAATATA
1 ATATA--TAAAATATAATATTAAAATATATACATAATATA
79909159 TACATATTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 21 0.60
43 3 0.09
45 11 0.31
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (40 bp):
ATATATAAAATATAATATTAAAATATATACATAATATAAA
Found at i:79909482 original size:14 final size:16
Alignment explanation
Indices: 79909451--79909487 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
79909441 TAATAATATT
79909451 AATAATAGATACAATAA
1 AATAATAGATAC-ATAA
79909468 AATAATA-ATAC-TAA
1 AATAATAGATACATAA
79909482 AATAAT
1 AATAAT
79909488 TGATTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
16 4 0.20
17 7 0.35
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (16 bp):
AATAATAGATACATAA
Found at i:79910002 original size:2 final size:2
Alignment explanation
Indices: 79909945--79909991 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
79909935 AAAAAAACAG
*
79909945 CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
79909987 CT CT C
1 CT CT C
79909992 AGCCCTCTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:79910844 original size:25 final size:25
Alignment explanation
Indices: 79910813--79910860 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
79910803 TCTTTACTCA
79910813 TTGTCGTGTAACGAGAACAGAGTTG
1 TTGTCGTGTAACGAGAACAGAGTTG
*
79910838 TTGTCGTGTAACGAGAATAGAGT
1 TTGTCGTGTAACGAGAACAGAGT
79910861 AAAGACGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TTGTCGTGTAACGAGAACAGAGTTG
Found at i:79911190 original size:29 final size:29
Alignment explanation
Indices: 79911148--79911205 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
79911138 CAATCTTTAT
* *
79911148 CCTCAGCGTGTGACCCGAGGCTCAACTCA
1 CCTCAGCGTATGACCCGAAGCTCAACTCA
*
79911177 CCTCAGCGTATGACCTGAAGCTCAACTCA
1 CCTCAGCGTATGACCCGAAGCTCAACTCA
79911206 TCTCTCGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (29 bp):
CCTCAGCGTATGACCCGAAGCTCAACTCA
Found at i:79911299 original size:75 final size:75
Alignment explanation
Indices: 79911196--79911398 Score: 347
Period size: 74 Copynumber: 2.7 Consensus size: 75
79911186 ATGACCTGAA
*
79911196 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCAACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCAACGT
79911261 GTGAGCTAAG
66 GTGAGCTAAG
* * *
79911271 GCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTGAACACATAAATTGAAAGTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-ACATAAATTGAAAATACCTCAACG
79911334 TGTGAGCTAAG
65 TGTGAGCTAAG
79911345 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAA
79911399 ATGGAAATGG
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
73 8 0.07
74 62 0.52
75 41 0.34
76 8 0.07
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCAACGT
GTGAGCTAAG
Found at i:79911518 original size:85 final size:85
Alignment explanation
Indices: 79911314--79911638 Score: 365
Period size: 85 Copynumber: 3.8 Consensus size: 85
79911304 TTGAACACAT
* *
79911314 AAATTGAAAG-TACCTCAGCGTGTGAGCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATT-AAAGTTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
**
79911378 TTTTGAAACATAAATTGAAAAATGG
61 TTTTGAAACATAAATTGAAAAACAG
* * *
79911403 AAATGGAAA-TTACCTCAGCGTATCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAT-TAAAGTTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
79911467 GAGACATAAGTTGAAGAACAG
65 GAAACATAAATTGAAAAACAG
* *
79911488 AAATTAAAGTTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTGTG
1 AAATTAAAGTTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
79911552 ACAAACA-AAATTGAAAAACAG
66 --AAACATAAATTGAAAAACAG
** *
79911573 AAATTAAAAAT-CTCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAATTAAAGTTAC-CTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
79911636 TTT
62 TTT
79911639 TTTGAAAGAC
Statistics
Matches: 203, Mismatches: 23, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
84 8 0.04
85 99 0.49
86 4 0.02
87 68 0.33
88 5 0.02
89 19 0.09
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (85 bp):
AAATTAAAGTTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAACATAAATTGAAAAACAG
Found at i:79911635 original size:172 final size:162
Alignment explanation
Indices: 79911269--79911710 Score: 481
Period size: 172 Copynumber: 2.7 Consensus size: 162
79911259 GTGTGAGCTA
* * *
79911269 AGGCTCAACTCACCTCTCGCAATATAAGTTGA---TTTTTG-AACACATAAATTGAAAGTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAGTACCTC
* * * ***
79911330 AGCGTGTGAGCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTG
66 AGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTGTGACAAACATAAATTG
** * *
79911395 AAAAATGGAAATGGAAATTACCTCAGCGTATCCCG
128 AAAAACAGAAATGAAAAATACCTCAGCGTATCCCG
79911430 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGACATAAGTTG-AAGAACAGAAATT-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------T---TTGAAAG-ACAGAAATTG
*
79911493 AAAGTTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTGTGACAAAC
56 AAAG-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGTGACAAAC
* *
79911558 A-AAATTGAAAAACAGAAATTAAAAAT-CTCTCAGCATGTGA-GCCG
120 ATAAATTGAAAAACAGAAATGAAAAATAC-CTCAGC--GT-ATCCCG
*
79911602 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAGTACCTC
* *
79911667 AAC-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
66 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
79911711 TTTGAAAATA
Statistics
Matches: 241, Mismatches: 20, Indels: 39
0.80 0.07 0.13
Matches are distributed among these distances:
161 31 0.13
162 39 0.16
163 20 0.08
164 8 0.03
166 1 0.00
169 1 0.00
170 27 0.11
171 8 0.03
172 75 0.31
173 10 0.04
174 21 0.09
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (162 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAGTACCTC
AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGTGACAAACATAAATTGAAA
AACAGAAATGAAAAATACCTCAGCGTATCCCG
Found at i:79920035 original size:15 final size:16
Alignment explanation
Indices: 79919991--79920046 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 16
79919981 ATGTACATGC
79919991 AATGAATGAATAAATG
1 AATGAATGAATAAATG
*
79920007 AATGAATG-ACAAATG
1 AATGAATGAATAAATG
*
79920022 AATG-TTGAATAAATG
1 AATGAATGAATAAATG
*
79920037 -ACGAATGAAT
1 AATGAATGAAT
79920047 GTTAGTCATG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 4 0.12
15 21 0.64
16 8 0.24
ACGTcount: A:0.52, C:0.04, G:0.20, T:0.25
Consensus pattern (16 bp):
AATGAATGAATAAATG
Found at i:79920036 original size:22 final size:22
Alignment explanation
Indices: 79920005--79920049 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
79919995 AATGAATAAA
*
79920005 TGAATGAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
*
79920027 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
79920049 T
1 T
79920050 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:79923853 original size:13 final size:13
Alignment explanation
Indices: 79923827--79923934 Score: 52
Period size: 13 Copynumber: 8.5 Consensus size: 13
79923817 GTATTAAGAG
*
79923827 TATACATATAAAAA
1 TATA-ATATTAAAA
79923841 TATAATATTAAAA
1 TATAATATTAAAA
*
79923854 -AT-ATA-T-ATA
1 TATAATATTAAAA
*
79923863 CATAATA-TAAAA
1 TATAATATTAAAA
*
79923875 TAT-AT-TTATAA
1 TATAATATTAAAA
*
79923886 TATAGTATTAAAA
1 TATAATATTAAAA
* *
79923899 TAT-ATACATAATA
1 TATAATA-TTAAAA
79923912 TATACATATTAGAAA
1 TATA-ATATTA-AAA
79923927 TAATAATA
1 T-ATAATA
79923935 ATGTTAAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
9 2 0.03
10 3 0.04
11 16 0.23
12 9 0.13
13 23 0.32
14 6 0.08
15 9 0.13
16 3 0.04
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (13 bp):
TATAATATTAAAA
Found at i:79923856 original size:73 final size:68
Alignment explanation
Indices: 79923769--79923936 Score: 176
Period size: 73 Copynumber: 2.4 Consensus size: 68
79923759 AATAATAACA
* * *
79923769 ATAATATTAAAAATAAATAATAATAGTGAAAATAATAAGTATAATATGGTATTAAGAGTATACAT
1 ATAATATTAAAAATAAATAATAATA-T-AAAAT-ATAAGTATAATATAGTATTAA-AATATACAC
79923834 ATAAAAAT
62 AT-AAAAT
** *
79923842 ATAATATTAAAAATATATATACATAATATAAAATATATTTATAATATAGTATTAAAATATATACA
1 ATAATATTAAAAATA-A-ATA-ATAATATAAAATATAAGTATAATATAGTATTAAAATATACACA
*
79923907 TAATAT
63 TAAAAT
*
79923913 ATACATATTAGAAAT-AATAATAAT
1 ATA-ATATTAAAAATAAATAATAAT
79923937 GTTAAAAACA
Statistics
Matches: 83, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
68 5 0.06
69 3 0.04
70 1 0.01
71 7 0.08
72 18 0.22
73 33 0.40
74 6 0.07
75 4 0.05
76 6 0.07
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.35
Consensus pattern (68 bp):
ATAATATTAAAAATAAATAATAATATAAAATATAAGTATAATATAGTATTAAAATATACACATAA
AAT
Found at i:79923860 original size:24 final size:23
Alignment explanation
Indices: 79923832--79923932 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 23
79923822 AAGAGTATAC
79923832 ATATAAAAATATAATATTAAAA-
1 ATATAAAAATATAATATTAAAAT
* * *
79923854 ATATATATACATAATA-TAAAAT
1 ATATAAAAATATAATATTAAAAT
* * *
79923876 ATATTTATAATATAGTATTAAAAT
1 ATA-TAAAAATATAATATTAAAAT
79923900 ATATACATAATATATACATATTAGAAAT
1 ATATA-A-AA-ATATA-ATATTA-AAAT
79923928 A-ATAA
1 ATATAA
79923933 TAATGTTAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
21 5 0.08
22 16 0.27
23 8 0.14
24 10 0.17
25 1 0.02
26 6 0.10
27 8 0.14
28 5 0.08
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (23 bp):
ATATAAAAATATAATATTAAAAT
Found at i:79923878 original size:42 final size:40
Alignment explanation
Indices: 79923832--79923913 Score: 94
Period size: 42 Copynumber: 1.9 Consensus size: 40
79923822 AAGAGTATAC
79923832 ATATA-AAAATATAATATTAAAAATATATATACATAATATAAA
1 ATATATAAAATATAATATT--AAA-ATATATACATAATATAAA
* *
79923874 ATATATTTATAATATAGTATTAAAATATATACATAATATA
1 ATATA--TAAAATATAATATTAAAATATATACATAATATA
79923914 TACATATTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 21 0.60
43 3 0.09
45 11 0.31
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (40 bp):
ATATATAAAATATAATATTAAAATATATACATAATATAAA
Found at i:79924757 original size:2 final size:2
Alignment explanation
Indices: 79924708--79924746 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
79924698 AAAAAAAAAG
79924708 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
79924747 AGCCCTCTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:79928920 original size:14 final size:15
Alignment explanation
Indices: 79928901--79928930 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
79928891 TTTTCTTTTG
79928901 AAAAATAATA-TAAT
1 AAAAATAATATTAAT
79928915 AAAAATAATATTAAT
1 AAAAATAATATTAAT
79928930 A
1 A
79928931 TTTAATAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATAATATTAAT
Found at i:79939241 original size:20 final size:21
Alignment explanation
Indices: 79939203--79939241 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
79939193 AGAGTCTTCA
*
79939203 AAAATAAATAAAAATAAAAGT
1 AAAATAAATAAAAAAAAAAGT
79939224 AAAA-AAATAAAAAAAAAA
1 AAAATAAATAAAAAAAAAA
79939242 TCAAACGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.13
Consensus pattern (21 bp):
AAAATAAATAAAAAAAAAAGT
Found at i:79949539 original size:20 final size:21
Alignment explanation
Indices: 79949511--79949572 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 21
79949501 ATTCATTTTT
*
79949511 ATTCGTATAAACTA-TAATTC
1 ATTCATATAAACTAGTAATTC
*
79949531 ATTCATAT-AACTAGTAGTTC
1 ATTCATATAAACTAGTAATTC
* *
79949551 ATCCATAT-AACCAGTAATTC
1 ATTCATATAAACTAGTAATTC
79949571 AT
1 AT
79949573 CAGTAATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
19 5 0.14
20 31 0.86
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (21 bp):
ATTCATATAAACTAGTAATTC
Found at i:79949573 original size:20 final size:20
Alignment explanation
Indices: 79949525--79949573 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
79949515 GTATAAACTA
* *
79949525 TAATTCATTCATATAACTAG
1 TAATTCATCCATATAACCAG
*
79949545 TAGTTCATCCATATAACCAG
1 TAATTCATCCATATAACCAG
79949565 TAATTCATC
1 TAATTCATC
79949574 AGTAATAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (20 bp):
TAATTCATCCATATAACCAG
Found at i:79949631 original size:20 final size:20
Alignment explanation
Indices: 79949525--79949649 Score: 64
Period size: 20 Copynumber: 6.4 Consensus size: 20
79949515 GTATAAACTA
*
79949525 TAATTCATTCATAT-AACTAG
1 TAATTCATCCATATCAA-TAG
* *
79949545 TAGTTCATCCATAT-AACCAG
1 TAATTCATCCATATCAA-TAG
* *
79949565 TAATTCAT-CA-GT-AATAA
1 TAATTCATCCATATCAATAG
* *** *
79949582 TAATTTATCTGCATCAACAG
1 TAATTCATCCATATCAATAG
*
79949602 TAATTCATCCGTATCAATAG
1 TAATTCATCCATATCAATAG
* *
79949622 TAATAT-ATCCATTTTAATAG
1 TAAT-TCATCCATATCAATAG
79949642 TAATTCAT
1 TAATTCAT
79949650 TTATTTCAAC
Statistics
Matches: 80, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
17 8 0.10
18 3 0.04
19 4 0.05
20 64 0.80
21 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (20 bp):
TAATTCATCCATATCAATAG
Found at i:79949856 original size:23 final size:23
Alignment explanation
Indices: 79949825--79949952 Score: 82
Period size: 23 Copynumber: 5.6 Consensus size: 23
79949815 CTGAGCTGAT
*
79949825 AAACAGTAAGCTCTATTAAGCTG
1 AAACAGTAAGCTCTATCAAGCTG
* *
79949848 AAACGGTAAGCTCTATCGAGCTG
1 AAACAGTAAGCTCTATCAAGCTG
* * * *
79949871 -AACAATAAACTTTATCGAGCT-
1 AAACAGTAAGCTCTATCAAGCTG
* * *
79949892 AAACAATAACCTCATAT-GAGCTG
1 AAACAGTAAGCTC-TATCAAGCTG
* * * * *
79949915 AATCGGTAAGCTCCAACGAGCTG
1 AAACAGTAAGCTCTATCAAGCTG
79949938 AAAACAGTAAGCTCT
1 -AAACAGTAAGCTCT
79949953 TACGAGCTGA
Statistics
Matches: 82, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
22 33 0.40
23 38 0.46
24 11 0.13
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (23 bp):
AAACAGTAAGCTCTATCAAGCTG
Found at i:79949912 original size:22 final size:22
Alignment explanation
Indices: 79949861--79949913 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
79949851 CGGTAAGCTC
* *
79949861 TATCGAGCTGAACAATAAACTT
1 TATCGAGCTAAACAATAAACTA
*
79949883 TATCGAGCTAAACAATAACCTCA
1 TATCGAGCTAAACAATAAACT-A
79949906 TAT-GAGCT
1 TATCGAGCT
79949914 GAATCGGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 24 0.89
23 3 0.11
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (22 bp):
TATCGAGCTAAACAATAAACTA
Found at i:79971317 original size:17 final size:17
Alignment explanation
Indices: 79971270--79971317 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
79971260 CATTATTTTG
79971270 ACTTTTTAAATTTTATA
1 ACTTTTTAAATTTTATA
* **
79971287 ACTTTATATTTTTTA-A
1 ACTTTTTAAATTTTATA
79971303 AGCTTTTTAAATTTT
1 A-CTTTTTAAATTTT
79971318 TTATATATAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (17 bp):
ACTTTTTAAATTTTATA
Found at i:79971486 original size:21 final size:21
Alignment explanation
Indices: 79971452--79971497 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
79971442 AAAGTCAATT
79971452 TTTTTAATACTTAATATTATAA
1 TTTTTAATACTTAATATTA-AA
* *
79971474 TTTTTAA-ATTTAATCTTAAA
1 TTTTTAATACTTAATATTAAA
79971494 TTTT
1 TTTT
79971498 ATTTTAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 9 0.41
22 7 0.32
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTAATACTTAATATTAAA
Found at i:79973291 original size:30 final size:30
Alignment explanation
Indices: 79973255--79973325 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
79973245 ACTTTTCTCA
*
79973255 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAAATCC
79973285 ACTAGCCACACCTTTTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAAATCC
79973315 ACTAGCCACAC
1 ACTAGCCACAC
79973326 TTGCTCCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.30, C:0.48, G:0.04, T:0.18
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAAATCC
Found at i:79973949 original size:25 final size:25
Alignment explanation
Indices: 79973899--79974072 Score: 99
Period size: 25 Copynumber: 7.0 Consensus size: 25
79973889 ATTCTTTTAA
* * *
79973899 TATATTAGGTATAT-T-TTAAATTC
1 TATATTATGTATATATATTTAATAC
*
79973922 TATATTACGTATATATATTGT-ATAC
1 TATATTATGTATATATATT-TAATAC
* * *
79973947 TATTTTATGTATATATCTTTAATAT
1 TATATTATGTATATATATTTAATAC
* **
79973972 TATATTATTTATATATATATTTTTACATGT
1 TATATTA--TGTATATATA--TTTA-ATAC
* *
79974002 TATCTTATGTATATAT-CTT-A-AC
1 TATATTATGTATATATATTTAATAC
* * *
79974024 TATATTATGTATGTATTTTTAACAC
1 TATATTATGTATATATATTTAATAC
* *
79974049 TATATTATGTACATATTTTTAATA
1 TATATTATGTATATATATTTAATA
79974073 TTATCACGTA
Statistics
Matches: 117, Mismatches: 22, Indels: 22
0.73 0.14 0.14
Matches are distributed among these distances:
22 14 0.12
23 16 0.14
24 3 0.03
25 55 0.47
27 8 0.07
28 8 0.07
29 4 0.03
30 9 0.08
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (25 bp):
TATATTATGTATATATATTTAATAC
Found at i:79973996 original size:14 final size:14
Alignment explanation
Indices: 79973949--79973996 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
79973939 TTGTATACTA
*
79973949 TTTTATGTATATAT
1 TTTTATATATATAT
*
79973963 CTTTA-ATATTATAT
1 TTTTATATA-TATAT
79973977 TATTTATATATATAT
1 T-TTTATATATATAT
79973992 TTTTA
1 TTTTA
79973997 CATGTTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 2 0.07
14 13 0.46
15 10 0.36
16 3 0.11
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (14 bp):
TTTTATATATATAT
Found at i:79974017 original size:30 final size:29
Alignment explanation
Indices: 79973956--79974017 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
79973946 CTATTTTATG
*
79973956 TATATATCTTTAATATTATATTATTTATA
1 TATATATCTTTAATATTATATTATGTATA
* * *
79973985 TATATATTTTTACATGTTATCTTATGTATA
1 TATATATCTTTA-ATATTATATTATGTATA
79974015 TAT
1 TAT
79974018 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TATATATCTTTAATATTATATTATGTATA
Found at i:79974256 original size:22 final size:22
Alignment explanation
Indices: 79974231--79974273 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
79974221 TATTATTCTA
79974231 ATATTT-TGATATTTTAATATTT
1 ATATTTAT-ATATTTTAATATTT
*
79974253 ATATTTATATATTTTATTATT
1 ATATTTATATATTTTAATATT
79974274 CACATCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
ATATTTATATATTTTAATATTT
Found at i:79978420 original size:18 final size:18
Alignment explanation
Indices: 79978397--79978432 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
79978387 GGAACAAGAG
79978397 AATAAACAGATTTTGCCT
1 AATAAACAGATTTTGCCT
79978415 AATAAACAGATTTTGCCT
1 AATAAACAGATTTTGCCT
79978433 CATGAAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
AATAAACAGATTTTGCCT
Found at i:79982820 original size:60 final size:60
Alignment explanation
Indices: 79982614--79982826 Score: 171
Period size: 62 Copynumber: 3.5 Consensus size: 60
79982604 CTTTCAAGGA
* *
79982614 AAATCAACTCATATG-GAG-GAGAGTGAGCCTCAAGACACG-TGAGATACTTTAATTTTGTTTTC
1 AAATCAACTCATATGCGAGAGAGAGTGAGCCTCAA-A-ACGCTGAGGTA-ATTAA-TTTG-TTTC
* * *
79982676 AAATCAACTCA-ATGC-AGAG-GTGTTGAG-CTCAGGAACGCTGA-GTAATTAATTTTTTGTC
1 AAATCAACTCATATGCGAGAGAGAG-TGAGCCTCA-AAACGCTGAGGTAATTAATTTGTT-TC
* *
79982734 -AAT-AACTCATATTGCGAGAGGTGAGTGAGCCTCAAAACGCTGAGGTAATCTCATTTGTTTC
1 AAATCAACTCATA-TGCGAGA-GAGAGTGAGCCTCAAAACGCTGAGGTAAT-TAATTTGTTTC
79982795 AAAAT-AACTCATATGCGAGAG-GAGTGAGCCTC
1 -AAATCAACTCATATGCGAGAGAGAGTGAGCCTC
79982827 GTCACATGCA
Statistics
Matches: 126, Mismatches: 9, Indels: 34
0.75 0.05 0.20
Matches are distributed among these distances:
56 6 0.05
57 6 0.05
58 8 0.06
59 7 0.06
60 29 0.23
61 29 0.23
62 30 0.24
63 11 0.09
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (60 bp):
AAATCAACTCATATGCGAGAGAGAGTGAGCCTCAAAACGCTGAGGTAATTAATTTGTTTC
Found at i:79982856 original size:13 final size:13
Alignment explanation
Indices: 79982838--79982866 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
79982828 TCACATGCAG
79982838 GTTTTCAATTTCT
1 GTTTTCAATTTCT
79982851 GTTTTCAATTTCT
1 GTTTTCAATTTCT
79982864 GTT
1 GTT
79982867 AAAAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.10, T:0.62
Consensus pattern (13 bp):
GTTTTCAATTTCT
Found at i:79982938 original size:72 final size:70
Alignment explanation
Indices: 79982852--79983082 Score: 356
Period size: 72 Copynumber: 3.2 Consensus size: 70
79982842 TCAATTTCTG
**
79982852 TTTTCAATTTCTGTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTCAATTTCTGTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGC
79982917 TGAGGTA
64 TGAGGTA
*
79982924 TTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTC-GACACGC
1 TTTTCAATTTCTG-TTTCAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCGGACACGC
79982988 TGAGGTA
64 TGAGGTA
* *
79982995 ATTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGC
1 TTTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--ACACGC
79983060 TGAGGTA
64 TGAGGTA
79983067 TTTTCAATTTCTGTTT
1 TTTTCAATTTCTGTTT
79983083 TTCAATTTCT
Statistics
Matches: 147, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
69 16 0.11
70 27 0.18
71 25 0.17
72 61 0.41
73 18 0.12
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (70 bp):
TTTTCAATTTCTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTG
AGGTA
Found at i:79983086 original size:14 final size:14
Alignment explanation
Indices: 79983067--79983095 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79983057 TGCTGAGGTA
79983067 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
79983081 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
79983095 T
1 T
79983096 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:79983120 original size:159 final size:159
Alignment explanation
Indices: 79982942--79983246 Score: 499
Period size: 159 Copynumber: 1.9 Consensus size: 159
79982932 TTCTGTTTTC
79982942 AAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTC-GACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTC
* * *
79983006 TG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCTGAGGTATT
65 TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGATGAGGTAAT
*
79983069 TTCAATTTCTGTTTTTCAATTTCTGTTCGTAA
128 TTCAATTTCTGTTTGTCAATTTCTGTTCGTAA
* * *
79983101 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTAATTTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCT
79983166 GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
66 GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
79983231 AATTTCTGTTTGTCAA
131 AATTTCTGTTTGTCAA
79983247 GAATCAACTC
Statistics
Matches: 136, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
158 16 0.12
159 76 0.56
160 42 0.31
161 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
AATTTCTGTTTGTCAATTTCTGTTCGTAA
Found at i:79983204 original size:71 final size:73
Alignment explanation
Indices: 79983082--79983277 Score: 297
Period size: 73 Copynumber: 2.7 Consensus size: 73
79983072 AATTTCTGTT
* *
79983082 TTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACG
1 TTTCAATTTCTGTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
79983146 CTGAGGTAT
65 ATGAGGTAA
* *
79983155 TTTTAATTTTTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
79983219 TGAGGTAA
66 TGAGGTAA
* *
79983227 TTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79983278 ACCTTTTAAT
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
71 39 0.35
72 27 0.24
73 45 0.41
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33
Consensus pattern (73 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
TGAGGTAA
Found at i:80012298 original size:17 final size:17
Alignment explanation
Indices: 80012251--80012298 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
80012241 CATTATTTTG
80012251 ACTTTTTAAATTTTATA
1 ACTTTTTAAATTTTATA
* **
80012268 ACTTTATATTTTTTA-A
1 ACTTTTTAAATTTTATA
80012284 AGCTTTTTAAATTTT
1 A-CTTTTTAAATTTT
80012299 TTATATATAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (17 bp):
ACTTTTTAAATTTTATA
Found at i:80012468 original size:22 final size:22
Alignment explanation
Indices: 80012432--80012479 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
80012422 CAAAGTCAAT
80012432 TTTTTTAATACTTAATATTATAA
1 TTTTTTAATACTTAATATTA-AA
* *
80012455 TTTTTTAA-ATTTAATCTTAAA
1 TTTTTTAATACTTAATATTAAA
80012476 TTTT
1 TTTT
80012480 ATTTTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 6 0.26
22 9 0.39
23 8 0.35
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTTTAATACTTAATATTAAA
Found at i:80013694 original size:1 final size:1
Alignment explanation
Indices: 80013688--80013716 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
80013678 ATCGTAACAC
80013688 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
80013717 CCAACCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:80014278 original size:30 final size:30
Alignment explanation
Indices: 80014242--80014312 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
80014232 ACTTTTCTCA
*
80014242 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAAATCC
80014272 ACTAGCCACACCTTTTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAAATCC
80014302 ACTAGCCACAC
1 ACTAGCCACAC
80014313 TTGCTCCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.30, C:0.48, G:0.04, T:0.18
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAAATCC
Found at i:80014929 original size:25 final size:25
Alignment explanation
Indices: 80014879--80015054 Score: 85
Period size: 25 Copynumber: 7.0 Consensus size: 25
80014869 ATTCTTTTAA
* * *
80014879 TATATTAGGTATAT-T-TTAAATTC
1 TATATTATGTATATATATTTAATAC
*
80014902 TATATTACGTATATATATTGT-ATAC
1 TATATTATGTATATATATT-TAATAC
* * *
80014927 TATTTTATGTATATATCTTTAATATTA
1 TATATTATGTATATATATTTAATA--C
* **
80014954 TATTATTTATATATATATATTTTTACATGT
1 TA-TA-TTATGTATATATA--TTTA-ATAC
* *
80014984 TATCTTATGTATATAT-CTT-A-AC
1 TATATTATGTATATATATTTAATAC
* * *
80015006 TATATTATGTATGTATTTTTAACAC
1 TATATTATGTATATATATTTAATAC
* *
80015031 TATATTATGTACATATTTTTAATA
1 TATATTATGTATATATATTTAATA
80015055 TTATCACGTA
Statistics
Matches: 116, Mismatches: 23, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
22 14 0.12
23 16 0.14
24 3 0.03
25 49 0.42
27 2 0.02
28 12 0.10
29 12 0.10
30 2 0.02
31 4 0.03
32 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (25 bp):
TATATTATGTATATATATTTAATAC
Found at i:80015227 original size:16 final size:15
Alignment explanation
Indices: 80015203--80015250 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80015193 TAATTATTAT
*
80015203 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
80015219 TATTTTAATATTTTA
1 TATTTTAATATTTTA
80015234 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
80015250 T
1 T
80015251 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:80015238 original size:7 final size:8
Alignment explanation
Indices: 80015203--80015254 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80015193 TAATTATTAT
*
80015203 TATTCTAA
1 TATTTTAA
*
80015211 TATTTTGA
1 TATTTTAA
80015219 TATTTTAA
1 TATTTTAA
80015227 TATTTT-A
1 TATTTTAA
80015234 TATTTTATA
1 TATTTTA-A
*
80015243 TATTTTAT
1 TATTTTAA
80015251 TATT
1 TATT
80015255 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:80028465 original size:73 final size:73
Alignment explanation
Indices: 80028284--80028809 Score: 490
Period size: 73 Copynumber: 6.9 Consensus size: 73
80028274 CTTTTCAAGG
* * * * * *
80028284 AAAATCAACTCATATTGCGAG-GGATGAGTTGAGCCTCAAGACACGTTGAGATACTTTTAATTTT
1 AAAATCAACTCATATTGCGAGAGG-TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
80028348 TGTTTTTC-
65 TGTTTGTCA
*
80028356 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
80028421 GTTTGTCA
66 GTTTGTCA
* *
80028429 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
80028494 GTTTGTCA
66 GTTTGTCA
* **
80028502 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
*
80028566 TCTGTTCTTCAATTTCTGTTCGT
63 TCTG---------TT-TG-TC-A
** * * * * * *
80028589 AAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCAGGACACGCTGAGGTAATTT
* *
80028651 AAATTTCTGTTTTTCA
58 CAATTTCTGTTTGTCA
* *
80028667 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
80028732 GTTTGTCA
66 GTTTGTCA
* * **
80028740 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
80028804 TCTGTT
63 TCTGTT
80028810 CTTCAATTTC
Statistics
Matches: 377, Mismatches: 45, Indels: 61
0.78 0.09 0.13
Matches are distributed among these distances:
72 64 0.17
73 180 0.48
75 47 0.12
78 17 0.05
79 5 0.01
80 2 0.01
81 4 0.01
84 4 0.01
85 3 0.01
86 5 0.01
87 17 0.05
90 23 0.06
92 4 0.01
93 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCA
Found at i:80028578 original size:14 final size:14
Alignment explanation
Indices: 80028559--80028586 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80028549 CTGAGGTCTT
80028559 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80028573 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80028587 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Done.