Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 244 of 320
Found at i:80028700 original size:165 final size:163
Alignment explanation
Indices: 80028428--80028734 Score: 506
Period size: 165 Copynumber: 1.9 Consensus size: 163
80028418 TCTGTTTGTC
*
80028428 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTAAATTTC
* * **
80028493 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTAA
80028558 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
129 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
* * *
80028593 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTAAATTTC
* *
80028658 TGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
66 TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAATT
80028723 TCAATTTCTGTT
131 TCAATTTCTGTT
80028735 TGTCAAAAAT
Statistics
Matches: 132, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
163 25 0.19
165 107 0.81
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (163 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTAAATTTC
TGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAATT
TCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
Found at i:80028774 original size:238 final size:237
Alignment explanation
Indices: 80028356--80029010 Score: 1148
Period size: 238 Copynumber: 2.8 Consensus size: 237
80028346 TTTGTTTTTC
* * *
80028356 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
* * *
80028421 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCT
66 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
80028486 CAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
131 CAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
80028551 GAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAA
196 GAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAA
80028594 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
* *
80028659 GTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
66 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
*
80028724 CAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
131 CAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
80028789 GAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
196 GAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
* *
80028831 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTAAATTTC
* *
80028896 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGATGAGGTAAT
65 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* *
80028961 TTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
129 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
80029011 ACCTTTTAAT
Statistics
Matches: 397, Mismatches: 18, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
237 56 0.14
238 242 0.61
239 99 0.25
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (237 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
GAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAA
Found at i:80028816 original size:14 final size:14
Alignment explanation
Indices: 80028797--80028824 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80028787 CTGAGGTCTT
80028797 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80028811 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80028825 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:80028938 original size:75 final size:74
Alignment explanation
Indices: 80028814--80029010 Score: 270
Period size: 75 Copynumber: 2.6 Consensus size: 74
80028804 TCTGTTCTTC
* * *
80028814 AATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
1 AATTTCTGTTTGT-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATG
*
80028879 AGGTATTTTTA
65 AGGTA-ATTTA
* * * *
80028890 AATTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGATGA
1 AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGA
*
80028955 GGTAATTTC
66 GGTAATTTA
* *
80028964 AATTTCTGTTTGTC-AAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
80029011 ACCTTTTAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
73 30 0.28
74 15 0.14
75 52 0.49
76 10 0.09
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (74 bp):
AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGA
GGTAATTTA
Found at i:80028966 original size:164 final size:162
Alignment explanation
Indices: 80028666--80028973 Score: 447
Period size: 164 Copynumber: 1.9 Consensus size: 162
80028656 TCTGTTTTTC
** *
80028666 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
* * * * **
80028731 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG--CACACGATGAGGTAA
80028796 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
129 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
* *
80028830 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTAAATTT
* *
80028895 TTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-ACACGATGAGGTA
65 CTGTTTGTC-AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-GGCACACGATGAGGTA
80028959 ATTTCAATTTCTGTT
128 ATTTCAATTTCTGTT
80028974 TGTCAAGAAT
Statistics
Matches: 128, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
164 75 0.59
165 15 0.12
166 36 0.28
167 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (162 bp):
AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTAAATTTC
TGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCACACGATGAGGTAATT
TCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
Found at i:80029172 original size:54 final size:55
Alignment explanation
Indices: 80029089--80029196 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 55
80029079 TGAGGTATTC
* * *
80029089 TTAATTTTTGTTGTTTCAAAAATCAACTCATGTTGCGAGAAGTGAGTTAAGCCTT
1 TTAATTTCTGTTGTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTT
* *
80029144 TTAATTTCTGTT-TGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTAATTTCTGTTGTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCT
80029197 CGGCTCACAT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 37 0.77
55 11 0.23
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (55 bp):
TTAATTTCTGTTGTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTT
Found at i:80029182 original size:128 final size:127
Alignment explanation
Indices: 80028885--80029230 Score: 430
Period size: 128 Copynumber: 2.7 Consensus size: 127
80028875 GCTGAGGTAT
* * *
80028885 TTTTAAATTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACAC
1 TTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * * *
80028950 GATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACC
64 GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACC
* * *
80029014 TTTTAATTTCTACTTTTTC-AAATTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTAATTTCT-GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
* * * *
80029078 CTGAGGT-ATTCTTAATTTTTGTTGTTTCAAAAATCAACTCATGTTGCGAGAAGTGAGTT-AAGC
65 CTGAGGTAATT-TCAATTTCTGTT-TGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAA-C
80029141 C
127 C
*
80029142 TTTTAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-
**
80029206 TGCTGAGGTCTTTTCAATTTCTGTT
64 -GCTGAGGTAATTTCAATTTCTGTT
80029231 CTTCAATTTC
Statistics
Matches: 187, Mismatches: 21, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
126 3 0.02
127 66 0.35
128 88 0.47
129 10 0.05
130 18 0.10
131 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.37
Consensus pattern (127 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
TGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACC
Found at i:80029237 original size:14 final size:14
Alignment explanation
Indices: 80029218--80029245 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80029208 CTGAGGTCTT
80029218 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80029232 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80029246 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:80029358 original size:74 final size:72
Alignment explanation
Indices: 80029251--80029471 Score: 275
Period size: 74 Copynumber: 3.0 Consensus size: 72
80029241 TGTTCGTAAA
80029251 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTT-AATTT
80029316 CTGTTTTCC
64 CTGTTTTCC
* * ** * *
80029325 AAAAATCAACTCATATTGGGAAAGAAGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAATTTC
80029390 TGTTTGT-C
65 TGTTT-TCC
* * *
80029398 -AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTTAATT
80029462 TCTGCTTTTC
63 TCTG-TTTTC
80029472 AATTTCTATT
Statistics
Matches: 125, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
71 2 0.02
72 32 0.26
73 12 0.10
74 76 0.61
75 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTTAATTTCT
GTTTTCC
Found at i:80029489 original size:17 final size:17
Alignment explanation
Indices: 80029467--80029501 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
80029457 TAATTTCTGC
*
80029467 TTTTCAATTTCTATTTT
1 TTTTCAATTTATATTTT
80029484 TTTTCAATTTATATTTT
1 TTTTCAATTTATATTTT
80029501 T
1 T
80029502 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTCAATTTATATTTT
Found at i:80029568 original size:106 final size:104
Alignment explanation
Indices: 80029380--80029589 Score: 276
Period size: 106 Copynumber: 2.0 Consensus size: 104
80029370 GCTGAGGTAA
* * * *
80029380 TTTCAATTTCTGTTTGTCAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTTCAATTTATATTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATG
* * * * *
80029445 CTGAGGTCTTTTTAATTTCTGCTTTTCAATTTCTATTTTT
66 CTGAGCTATTTTCAATTTCTG-TTTTCAATGTCTAGTTTT
* * * *
80029485 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTTGACTCACGT
1 TTTCAATTTATATTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACAT
*
80029550 GCTGAGCTATTTTCAATTTCTGTTTTTAATGTCTAGTTTT
65 GCTGAGCTATTTTCAATTTCTGTTTTCAATGTCTAGTTTT
80029590 ACGGAGTCAA
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
105 30 0.33
106 60 0.67
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (104 bp):
TTTCAATTTATATTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATG
CTGAGCTATTTTCAATTTCTGTTTTCAATGTCTAGTTTT
Found at i:80030229 original size:30 final size:30
Alignment explanation
Indices: 80030193--80030354 Score: 270
Period size: 30 Copynumber: 5.4 Consensus size: 30
80030183 ACTTTTCTCA
80030193 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
80030223 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
80030253 ACTAGCCACTCCTTTTTCCACCACCAACTCC
1 ACTAGCCACACC-TTTTCCACCACCAACTCC
* *
80030284 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
80030314 ACTAGCCACACCTTTTCCACCCCCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
80030344 ACTAGCCACAC
1 ACTAGCCACAC
80030355 TTGCTCCATT
Statistics
Matches: 125, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
30 96 0.77
31 29 0.23
ACGTcount: A:0.26, C:0.49, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:80030280 original size:61 final size:60
Alignment explanation
Indices: 80030193--80030354 Score: 270
Period size: 61 Copynumber: 2.7 Consensus size: 60
80030183 ACTTTTCTCA
80030193 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
* * *
80030253 ACTAGCCACTCCTTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACC-TTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
* *
80030314 ACTAGCCACACCTTTTCCACCCCCAAATCCACTAGCCACAC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACAC
80030355 TTGCTCCATT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
60 37 0.39
61 57 0.61
ACGTcount: A:0.26, C:0.49, G:0.04, T:0.22
Consensus pattern (60 bp):
ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:80030976 original size:25 final size:25
Alignment explanation
Indices: 80030926--80031016 Score: 80
Period size: 25 Copynumber: 3.7 Consensus size: 25
80030916 ATTCTTTTAA
* * *
80030926 TATATTAGGTATAT-T-TTAAATTC
1 TATATTATGTATATATATTTAATAC
*
80030949 TATATTACGTATATATATTGT-ATAC
1 TATATTATGTATATATATT-TAATAC
* * *
80030974 TATTTTATGTATATATCTTTAATAT
1 TATATTATGTATATATATTTAATAC
*
80030999 TATATTATTTATATATAT
1 TATATTATGTATATATAT
80031017 ATATATTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
23 13 0.24
24 2 0.04
25 39 0.72
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATTATGTATATATATTTAATAC
Found at i:80031023 original size:16 final size:17
Alignment explanation
Indices: 80030969--80031024 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 17
80030959 ATATATATTG
*
80030969 TATACTATTT-TATGTA
1 TATACTATTTATATATA
*
80030985 TATA-TCTTTA-ATAT-
1 TATACTATTTATATATA
*
80030999 TATATTATTTATATATA
1 TATACTATTTATATATA
80031016 TATA-TATTT
1 TATACTATTT
80031025 TTTTTACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 4 0.12
15 12 0.36
16 13 0.39
17 4 0.12
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (17 bp):
TATACTATTTATATATA
Found at i:80031098 original size:24 final size:22
Alignment explanation
Indices: 80031040--80031100 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 22
80031030 ACATGTTATC
*
80031040 TTATGTATATATCTTAACTATA
1 TTATGTATATATTTTAACTATA
*
80031062 TTATGTATGTATTTTAACACTATA
1 TTATGTATATATTTT-A-ACTATA
*
80031086 TTATGTACATATTTT
1 TTATGTATATATTTT
80031101 TAATATTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 13 0.39
23 1 0.03
24 19 0.58
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (22 bp):
TTATGTATATATTTTAACTATA
Found at i:80031276 original size:16 final size:15
Alignment explanation
Indices: 80031252--80031299 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80031242 TATTAATTAT
*
80031252 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
80031268 TATTTTAATATTTTA
1 TATTTTAATATTTTA
80031283 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
80031299 T
1 T
80031300 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:80031287 original size:7 final size:8
Alignment explanation
Indices: 80031252--80031303 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80031242 TATTAATTAT
*
80031252 TATTCTAA
1 TATTTTAA
*
80031260 TATTTTGA
1 TATTTTAA
80031268 TATTTTAA
1 TATTTTAA
80031276 TATTTT-A
1 TATTTTAA
80031283 TATTTTATA
1 TATTTTA-A
*
80031292 TATTTTAT
1 TATTTTAA
80031300 TATT
1 TATT
80031304 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:80036301 original size:22 final size:22
Alignment explanation
Indices: 80036241--80036302 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 22
80036231 CTAGTAATAT
*
80036241 AAAAATATAAAACAAATGCATA
1 AAAAATATAAAACAAATACATA
*
80036263 AGGAAAATGAAATAAACAAATACATA
1 A--AAAAT-ATA-AAACAAATACATA
80036289 AAAAATATAAAACA
1 AAAAATATAAAACA
80036303 TGAAAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 6 0.18
23 2 0.06
24 10 0.30
25 2 0.06
26 13 0.39
ACGTcount: A:0.69, C:0.08, G:0.06, T:0.16
Consensus pattern (22 bp):
AAAAATATAAAACAAATACATA
Found at i:80036824 original size:3 final size:3
Alignment explanation
Indices: 80036338--80036807 Score: 209
Period size: 3 Copynumber: 158.0 Consensus size: 3
80036328 AATGAGAACG
* * *
80036338 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA ATA TTA ATA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
80036386 ATG ATA ATA ATA ATA GTA ATA ATA AGA ATA TTA ATA TTA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
80036434 ATA ATG ATA ATA GTA ATGGA A-A ATA AAA ATA AAA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
80036479 AT- ATA ATA ATA GTAA ATA A-A AGTA A-A AGTA ATA GTA ATA ATA ATG
1 ATA ATA ATA ATA AT-A ATA ATA A-TA ATA A-TA ATA ATA ATA ATA ATA
* * * *
80036524 ATA ATA ATAA ATA GTA ATA ATA ACA ATA ATA AAA ATA GTA ATA AT-
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
80036569 GTA TTAA ATG GTA A-A AGA ATA ATA GTA ACA ATA ATT TTA A-A A-A
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
80036612 ATG ATA GTA GTA ATA A-A ATA A-G ATT ATA ATA ATA TTA ATA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
80036658 ATGA A-C ATA A-A AAA ATA GTA ATA ATA GTA ATA ATA ATA GTA ATA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** ** * *
80036702 GTA A-A AGGA ATA ATA ATA GCA ATA ATA A-A AGCG TTA ATA ATA GTA
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* ** * * *
80036747 ATA ATA CA-A ATA ATA ATA TATA TGTA CGA AAA ATA ATA ATA GTT A-A
1 ATA ATA -ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA ATA ATA
80036793 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
80036808 GAAGTAGTAA
Statistics
Matches: 340, Mismatches: 99, Indels: 56
0.69 0.20 0.11
Matches are distributed among these distances:
2 29 0.09
3 287 0.84
4 22 0.06
5 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:80043208 original size:4 final size:4
Alignment explanation
Indices: 80043188--80043231 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
80043178 TGAAATGATC
* *
80043188 AAAT ACAT AAGT AAAT AAAT AAAT AAAT AAAT AAAT AAAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
80043232 ACATGGCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 31 0.89
5 4 0.11
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:80043289 original size:15 final size:16
Alignment explanation
Indices: 80043271--80043314 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
80043261 CGAAAACGAT
80043271 AATAATAATAATAT-A
1 AATAATAATAATATAA
*
80043286 AATAATAATAGTATAA
1 AATAATAATAATATAA
*
80043302 AACAATAATAATA
1 AATAATAATAATA
80043315 CATATGGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (16 bp):
AATAATAATAATATAA
Found at i:80043954 original size:22 final size:21
Alignment explanation
Indices: 80043923--80043976 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
80043913 ATATATATAT
*
80043923 TAAAAGATATA-TACATATGTAA
1 TAAAAAATATACTA-ATAT-TAA
* *
80043945 TGAAACATATACTAATATTAA
1 TAAAAAATATACTAATATTAA
80043966 TAAAAAATATA
1 TAAAAAATATA
80043977 ATAAGAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 12 0.44
22 13 0.48
23 2 0.07
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (21 bp):
TAAAAAATATACTAATATTAA
Found at i:80044046 original size:23 final size:23
Alignment explanation
Indices: 80044020--80044065 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
80044010 ATATAACGTG
*
80044020 GTATTAAAGATGTGTATA-ATATA
1 GTATTAAA-ATATGTATACATATA
*
80044043 GTATTTAAATATGTATACATATA
1 GTATTAAAATATGTATACATATA
80044066 TTTATTAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.43, C:0.02, G:0.13, T:0.41
Consensus pattern (23 bp):
GTATTAAAATATGTATACATATA
Found at i:80044180 original size:20 final size:21
Alignment explanation
Indices: 80044146--80044185 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
80044136 AGTTGAAACT
*
80044146 AAAAAATAATTCTAATAATAG
1 AAAAAATAATACTAATAATAG
80044167 AAAAAAT-ATACTAATAATA
1 AAAAAATAATACTAATAATA
80044186 ATAATAACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAAAATAATACTAATAATAG
Found at i:80044220 original size:22 final size:20
Alignment explanation
Indices: 80044185--80044253 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
80044175 TACTAATAAT
*
80044185 AATAATAACGATAATGGTAAA
1 AATAATAA-AATAATGGTAAA
* **
80044206 TATAATAGCAAATAATATTAAA
1 AATAATA--AAATAATGGTAAA
*
80044228 AATAATAAAAAAATGGTAAA
1 AATAATAAAATAATGGTAAA
*
80044248 AGTAAT
1 AATAAT
80044254 GTATAAACTA
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
20 15 0.41
21 6 0.16
22 15 0.41
23 1 0.03
ACGTcount: A:0.61, C:0.03, G:0.10, T:0.26
Consensus pattern (20 bp):
AATAATAAAATAATGGTAAA
Found at i:80046079 original size:46 final size:46
Alignment explanation
Indices: 80046029--80046157 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
80046019 TGGTTGAGCA
*
80046029 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
*
80046075 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* * *
80046121 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80046158 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
Found at i:80050451 original size:47 final size:47
Alignment explanation
Indices: 80050400--80050560 Score: 295
Period size: 47 Copynumber: 3.4 Consensus size: 47
80050390 ATTGATGTAC
80050400 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * *
80050447 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
80050494 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
80050541 AAAGTGTGTATATGTGATAA
1 AAAGTGTGTATATGTGATAA
80050561 TGTGAAAGTG
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 108 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:80050572 original size:71 final size:71
Alignment explanation
Indices: 80050480--80050631 Score: 286
Period size: 71 Copynumber: 2.1 Consensus size: 71
80050470 CGAATGGCCA
80050480 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGAT-AATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
80050545 TGTGTAT
65 TGTATAT
80050552 ATGTGATAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATGTGATAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
80050617 GTATAT
66 GTATAT
80050623 ATGTGATAA
1 ATGTGATAA
80050632 GGCCGAGTGG
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
71 72 0.91
72 7 0.09
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.32
Consensus pattern (71 bp):
ATGTGATAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATAT
Found at i:80050580 original size:118 final size:118
Alignment explanation
Indices: 80050433--80050678 Score: 393
Period size: 118 Copynumber: 2.1 Consensus size: 118
80050423 CTAATGGCCG
80050433 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGAT-AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * * *
80050498 TGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
65 TGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAT
* * *
80050552 ATGTGATAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATGTGATAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
*
80050617 GTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATAT
66 GTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAT
*
80050670 ATGAGATAA
1 ATGTGATAA
80050679 GACCTAATGG
Statistics
Matches: 117, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
118 110 0.94
119 7 0.06
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (118 bp):
ATGTGATAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAT
Found at i:80050612 original size:47 final size:47
Alignment explanation
Indices: 80050552--80050773 Score: 302
Period size: 47 Copynumber: 4.7 Consensus size: 47
80050542 AAGTGTGTAT
* * *
80050552 ATGTGAT-AATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
80050598 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
80050645 ACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
80050692 ATGTGATGGATGTGAAGGTGTATATATGTGATATGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
80050739 ATTTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80050774 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 7 0.05
47 146 0.95
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:80050671 original size:94 final size:94
Alignment explanation
Indices: 80050554--80050773 Score: 334
Period size: 94 Copynumber: 2.4 Consensus size: 94
80050544 GTGTGTATAT
* *
80050554 GTGAT-AATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG
*
80050618 TATATATGTGATAAGGCCGAGTGGCCAAC
66 TATATATGTGATAAGGCCGAATGGCCAAC
* * *
80050647 GTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
80050712 TATATATGTGATATGGCCGAATGGCCAAT
66 TATATATGTGATAAGGCCGAATGGCCAAC
* * *
80050741 TTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
80050774 TCCCGAAGGG
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
93 5 0.04
94 109 0.96
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCGAATGGCCAAC
Found at i:80050687 original size:165 final size:165
Alignment explanation
Indices: 80050400--80050724 Score: 578
Period size: 165 Copynumber: 2.0 Consensus size: 165
80050390 ATTGATGTAC
80050400 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * *
80050465 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATG
66 AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATG
*
80050530 TGATGAATGTGAAAGTGTGTATATGTGATAATGTG
131 TGATGAATGTGAAAGTGTATATATGTGATAATGTG
80050565 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
80050630 AAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATG
66 AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATG
* *
80050695 TGATGGATGTGAAGGTGTATATATGTGATA
131 TGATGAATGTGAAAGTGTATATATGTGATA
80050725 TGGCCGAATG
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 152 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (165 bp):
AAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAATGTG
Found at i:80059898 original size:25 final size:25
Alignment explanation
Indices: 80059850--80059899 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
80059840 TTTGGCTTGA
**
80059850 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
80059875 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
80059900 AAAATTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:80065139 original size:11 final size:11
Alignment explanation
Indices: 80065123--80065148 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
80065113 CCAGAAGATC
80065123 AACTATATTCT
1 AACTATATTCT
80065134 AACTATATTCT
1 AACTATATTCT
80065145 AACT
1 AACT
80065149 GAATTAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (11 bp):
AACTATATTCT
Found at i:80066220 original size:30 final size:30
Alignment explanation
Indices: 80066174--80066233 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80066164 CCATAATGAG
*
80066174 AGCACCGATTGAACACCAAGAGAAAAACAA
1 AGCACCGATCGAACACCAAGAGAAAAACAA
*
80066204 AGCATCGATCGAACACCAAGAGAAAAACAA
1 AGCACCGATCGAACACCAAGAGAAAAACAA
80066234 CTTATGAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.53, C:0.23, G:0.17, T:0.07
Consensus pattern (30 bp):
AGCACCGATCGAACACCAAGAGAAAAACAA
Found at i:80067617 original size:27 final size:28
Alignment explanation
Indices: 80067568--80067620 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
80067558 CTCATTACAA
*
80067568 TAATTAAAAATACAATATTTATAAAAAT
1 TAATTAAAAATACAATATGTATAAAAAT
**
80067596 TAATTAAAAATTTAA-ATGTATAAAA
1 TAATTAAAAATACAATATGTATAAAA
80067621 TCACATACGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (28 bp):
TAATTAAAAATACAATATGTATAAAAAT
Found at i:80076945 original size:6 final size:6
Alignment explanation
Indices: 80076934--80076969 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
80076924 TTAAAGGTGT
*
80076934 TGGGGG TGGGGG TGGGGG TGGGGG TAGGGG TGGGGG
1 TGGGGG TGGGGG TGGGGG TGGGGG TGGGGG TGGGGG
80076970 AGGCGGAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.03, C:0.00, G:0.81, T:0.17
Consensus pattern (6 bp):
TGGGGG
Found at i:80076977 original size:6 final size:6
Alignment explanation
Indices: 80076935--80076996 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
80076925 TAAAGGTGTT
* * * * * *
80076935 GGGGGT GGGGGT GGGGGT GGGGGTA -GGGGT GGGGGA GGCGGA GGGCGA
1 GGGGGA GGGGGA GGGGGA GGGGG-A GGGGGA GGGGGA GGGGGA GGGGGA
80076983 GGGGGA GGGGGA GG
1 GGGGGA GGGGGA GG
80076997 AAGGGAATGA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.10, C:0.03, G:0.79, T:0.08
Consensus pattern (6 bp):
GGGGGA
Found at i:80087900 original size:24 final size:23
Alignment explanation
Indices: 80087873--80087942 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 23
80087863 AATAAAAGAG
80087873 TTAAAAATAAAAAAAATACATTAA
1 TTAAAAATAAAAAAAA-ACATTAA
* **
80087897 TTAAAAATATCATCAAAACATTAA
1 TTAAAAATA-AAAAAAAACATTAA
*
80087921 TTAAAAATTAAAAAAAAC-TTAA
1 TTAAAAATAAAAAAAAACATTAA
80087943 AACAATATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 4 0.11
23 6 0.16
24 24 0.63
25 4 0.11
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
TTAAAAATAAAAAAAAACATTAA
Found at i:80089340 original size:25 final size:26
Alignment explanation
Indices: 80089298--80089351 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 26
80089288 AAATAATTAC
80089298 TTATTCGAATTGATTTAAA-AAATAAA
1 TTATTCGAATTGATTTAAATAAA-AAA
80089324 TTATTC-AATTCGA-TTAAATAAAAAA
1 TTATTCGAATT-GATTTAAATAAAAAA
80089349 TTA
1 TTA
80089352 AATTTTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (26 bp):
TTATTCGAATTGATTTAAATAAAAAA
Found at i:80090280 original size:13 final size:13
Alignment explanation
Indices: 80090264--80090308 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
80090254 GGTTGACGAG
80090264 AAAAAGTAAATAT
1 AAAAAGTAAATAT
** *
80090277 AAAATTTTAAATTT
1 AAAA-AGTAAATAT
80090291 AAAAAGTAAATAT
1 AAAAAGTAAATAT
80090304 AAAAA
1 AAAAA
80090309 TATTTTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (13 bp):
AAAAAGTAAATAT
Found at i:80090833 original size:23 final size:20
Alignment explanation
Indices: 80090806--80090849 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 20
80090796 GTAGTACAAA
80090806 TTATAATTATAAAATTATATAAT
1 TTATAATTA-AAAA-TAT-TAAT
*
80090829 TTATACTTAAAAATATTAAT
1 TTATAATTAAAAATATTAAT
80090849 T
1 T
80090850 ATTGTAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 4 0.20
23 8 0.40
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TTATAATTAAAAATATTAAT
Found at i:80091099 original size:46 final size:46
Alignment explanation
Indices: 80091040--80091131 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
80091030 TTGGGTTATT
*
80091040 TCCTCTTCAATATTTAACATAAGCTCACTTTTATCAAATGTTGGTA
1 TCCTCTTCAATATTTAACATAAGCTCACTTTCATCAAATGTTGGTA
*
80091086 TCCTCTTTAATATTTAACATAAGCTCACTTTCATCAAATGTTGGTA
1 TCCTCTTCAATATTTAACATAAGCTCACTTTCATCAAATGTTGGTA
80091132 CTTGATCAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (46 bp):
TCCTCTTCAATATTTAACATAAGCTCACTTTCATCAAATGTTGGTA
Found at i:80091410 original size:29 final size:29
Alignment explanation
Indices: 80091377--80091437 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
80091367 AAAGAGTTTG
*
80091377 TAAGTTATCTCTTGTTACATTCTCTCAAA
1 TAAGTCATCTCTTGTTACATTCTCTCAAA
* * *
80091406 TAAGTCATTTCTTGTTCCGTTCTCTCAAA
1 TAAGTCATCTCTTGTTACATTCTCTCAAA
80091435 TAA
1 TAA
80091438 TATCATAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.21, G:0.08, T:0.44
Consensus pattern (29 bp):
TAAGTCATCTCTTGTTACATTCTCTCAAA
Found at i:80093425 original size:7 final size:7
Alignment explanation
Indices: 80093415--80093461 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
80093405 ATGTTAAGTA
80093415 TATATAT
1 TATATAT
80093422 TATATAT
1 TATATAT
80093429 TATATAT
1 TATATAT
80093436 TATATAT
1 TATATAT
80093443 TATATAT
1 TATATAT
80093450 TATATAT
1 TATATAT
80093457 TATAT
1 TATAT
80093462 TATATTATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TATATAT
Found at i:80093477 original size:14 final size:12
Alignment explanation
Indices: 80093413--80093470 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
80093403 AAATGTTAAG
80093413 TATA-TATATTA
1 TATATTATATTA
80093424 TATATTATA-TA
1 TATATTATATTA
80093435 T-TA-TATATTA
1 TATATTATATTA
80093445 TATATTATA-TA
1 TATATTATATTA
80093456 TTATATTATATTA
1 -TATATTATATTA
80093469 TA
1 TA
80093471 ATAATTAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
9 4 0.10
10 5 0.12
11 11 0.27
12 19 0.46
13 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATTATATTA
Found at i:80094419 original size:41 final size:40
Alignment explanation
Indices: 80094370--80094480 Score: 120
Period size: 41 Copynumber: 2.8 Consensus size: 40
80094360 TTTGACTTCG
80094370 AGTCGATGAGACACTGGGTGTCAATTTATTACTTCGGATTA
1 AGTCGATGAGACACTGGGTGTCAATTTATTACTTCGG-TTA
* * * * *
80094411 ATTCGATGAGGCATTGGGTGCCAATTTA-T--TTCGGTTT
1 AGTCGATGAGACACTGGGTGTCAATTTATTACTTCGGTTA
* * *
80094448 AGCCGATGAGACACTGTGTGTCAACTTATTACT
1 AGTCGATGAGACACTGGGTGTCAATTTATTACT
80094481 GCGAATTATC
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
37 23 0.42
38 6 0.11
40 2 0.04
41 24 0.44
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (40 bp):
AGTCGATGAGACACTGGGTGTCAATTTATTACTTCGGTTA
Found at i:80094477 original size:37 final size:38
Alignment explanation
Indices: 80094373--80094477 Score: 104
Period size: 37 Copynumber: 2.7 Consensus size: 38
80094363 GACTTCGAGT
**
80094373 CGATGAGACACTGGGTGTCAATTTATTACTTCGGATTAATT
1 CGATGAGACACTGGGTGTCAATTTA-T--TTCGGATTAAGC
* * * *
80094414 CGATGAGGCATTGGGTGCCAATTTATTTCGG-TTTAGC
1 CGATGAGACACTGGGTGTCAATTTATTTCGGATTAAGC
* *
80094451 CGATGAGACACTGTGTGTCAACTTATT
1 CGATGAGACACTGGGTGTCAATTTATT
80094478 ACTGCGAATT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
37 25 0.47
38 5 0.09
40 1 0.02
41 22 0.42
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAATTTATTTCGGATTAAGC
Found at i:80100806 original size:16 final size:18
Alignment explanation
Indices: 80100785--80100822 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
80100775 TTCTATATGG
80100785 ATTTTACT-TT-TATTTT
1 ATTTTACTGTTGTATTTT
80100801 ATTTTACTGTTGTATTTT
1 ATTTTACTGTTGTATTTT
80100819 ATTT
1 ATTT
80100823 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.71
Consensus pattern (18 bp):
ATTTTACTGTTGTATTTT
Found at i:80105278 original size:16 final size:18
Alignment explanation
Indices: 80105257--80105294 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
80105247 TTTTATATGA
80105257 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
80105273 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
80105291 ATTT
1 ATTT
80105295 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:80111998 original size:46 final size:46
Alignment explanation
Indices: 80111948--80112211 Score: 404
Period size: 46 Copynumber: 5.7 Consensus size: 46
80111938 TGCCATAATG
* * * *
80111948 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
* **** **
80111994 TCTTTCAACTATGGTCTTGTTTATTTCATATCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
80112040 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
80112086 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
80112132 TCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
80112178 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
80112212 AGAGCACACT
Statistics
Matches: 203, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 199 0.98
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:80114985 original size:30 final size:30
Alignment explanation
Indices: 80114950--80115030 Score: 105
Period size: 29 Copynumber: 2.7 Consensus size: 30
80114940 TTCGATAACG
80114950 TTAGTGACTATTTTGTTATTTTTGTAAAA-T
1 TTAGTGACTATTTTGTTATTTTT-TAAAATT
* *
80114980 TTAGTGACTGA-GTTG-TATCTTTTAAAATT
1 TTAGTGACT-ATTTTGTTATTTTTTAAAATT
80115009 TTAGTGACTATTTTGTTATTTT
1 TTAGTGACTATTTTGTTATTTT
80115031 AATCAAAGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
28 6 0.14
29 19 0.44
30 17 0.40
31 1 0.02
ACGTcount: A:0.25, C:0.05, G:0.15, T:0.56
Consensus pattern (30 bp):
TTAGTGACTATTTTGTTATTTTTTAAAATT
Found at i:80115445 original size:9 final size:9
Alignment explanation
Indices: 80115431--80115460 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
80115421 GTTGAATTTT
*
80115431 ATAATTCGA
1 ATAATTTGA
80115440 ATAATTTGA
1 ATAATTTGA
80115449 ATAATTTGA
1 ATAATTTGA
80115458 ATA
1 ATA
80115461 GCATATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (9 bp):
ATAATTTGA
Found at i:80116817 original size:6 final size:6
Alignment explanation
Indices: 80116808--80116846 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
80116798 GAAATACACC
* * *
80116808 GTAATA GTAACA GTAACA GTAATA GTAACA GTAATA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
80116847 GTGGTCAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (6 bp):
GTAACA
Found at i:80116828 original size:12 final size:12
Alignment explanation
Indices: 80116808--80116846 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
80116798 GAAATACACC
* *
80116808 GTAATAGTAACA
1 GTAACAGTAATA
80116820 GTAACAGTAATA
1 GTAACAGTAATA
80116832 GTAACAGTAATA
1 GTAACAGTAATA
80116844 GTA
1 GTA
80116847 GTGGTCAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (12 bp):
GTAACAGTAATA
Found at i:80116831 original size:18 final size:18
Alignment explanation
Indices: 80116808--80116846 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
80116798 GAAATACACC
80116808 GTAATAGTAACAGTAACA
1 GTAATAGTAACAGTAACA
*
80116826 GTAATAGTAACAGTAATA
1 GTAATAGTAACAGTAACA
80116844 GTA
1 GTA
80116847 GTGGTCAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (18 bp):
GTAATAGTAACAGTAACA
Found at i:80117471 original size:23 final size:23
Alignment explanation
Indices: 80117444--80117492 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
80117434 TCAATTGTAA
80117444 CTTGAATTTCTCCCACTTCAATC
1 CTTGAATTTCTCCCACTTCAATC
80117467 CTTGAATTTCTCCCACTTCAATC
1 CTTGAATTTCTCCCACTTCAATC
80117490 CTT
1 CTT
80117493 TTTATCTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.35, G:0.04, T:0.41
Consensus pattern (23 bp):
CTTGAATTTCTCCCACTTCAATC
Found at i:80118188 original size:12 final size:12
Alignment explanation
Indices: 80118171--80118200 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
80118161 AGTCTCTTTT
80118171 AACAAAAATTAC
1 AACAAAAATTAC
80118183 AACAAAAATTAC
1 AACAAAAATTAC
80118195 AA-AAAA
1 AACAAAA
80118201 GATTTGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (12 bp):
AACAAAAATTAC
Found at i:80118301 original size:20 final size:17
Alignment explanation
Indices: 80118259--80118301 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 17
80118249 TTTATATTTT
*
80118259 TTAAAAATTATAAAAAT
1 TTAAAAATTATAAAAAG
80118276 TTAAAAATATATAAGGAAAG
1 TTAAAAAT-TATAA--AAAG
80118296 TTAAAA
1 TTAAAA
80118302 TTTTAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
20 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (17 bp):
TTAAAAATTATAAAAAG
Found at i:80123326 original size:15 final size:16
Alignment explanation
Indices: 80123301--80123330 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80123291 AAGAGTGGAA
80123301 TTTTATATATTTATAC
1 TTTTATATATTTATAC
80123317 TTTT-TATATTTATA
1 TTTTATATATTTATA
80123331 TCTATAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTATATATTTATAC
Found at i:80125805 original size:17 final size:17
Alignment explanation
Indices: 80125783--80125819 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
80125773 GAAGTGAAAA
80125783 AGACAAAAAGGTTAATT
1 AGACAAAAAGGTTAATT
*
80125800 AGACAAAAAGGTTACTT
1 AGACAAAAAGGTTAATT
80125817 AGA
1 AGA
80125820 GTAGGTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.08, G:0.19, T:0.22
Consensus pattern (17 bp):
AGACAAAAAGGTTAATT
Found at i:80130398 original size:22 final size:23
Alignment explanation
Indices: 80130373--80130418 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
80130363 CAACCAAATC
80130373 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
80130395 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
80130418 A
1 A
80130419 CGTTATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:80134117 original size:23 final size:23
Alignment explanation
Indices: 80134091--80134135 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
80134081 TAGAAATGTG
*
80134091 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
80134114 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
80134136 TTGAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:80148097 original size:26 final size:26
Alignment explanation
Indices: 80148060--80148118 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 26
80148050 AATGAAAGCG
*
80148060 GTGATGATTTCTTGTTAGTGTCAATGA
1 GTGAT-ATTTCTTATTAGTGTCAATGA
80148087 GTGATATTTCTTATTAGTGTCAATGA
1 GTGATATTTCTTATTAGTGTCAATGA
80148113 GTGATA
1 GTGATA
80148119 AATCCAAGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.44
Consensus pattern (26 bp):
GTGATATTTCTTATTAGTGTCAATGA
Found at i:80149109 original size:18 final size:19
Alignment explanation
Indices: 80149078--80149121 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
80149068 ACAGTACCTA
*
80149078 AACAGTAATCAGTAACGGT
1 AACAGTAATCAGTAACAGT
*
80149097 AGCAGTAAT-AGTAACAGT
1 AACAGTAATCAGTAACAGT
80149115 AACAGTA
1 AACAGTA
80149122 TTCAACACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (19 bp):
AACAGTAATCAGTAACAGT
Found at i:80149115 original size:6 final size:6
Alignment explanation
Indices: 80149078--80149121 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
80149068 ACAGTACCTA
* * *
80149078 AACAGT AATCAGT AACGGT AGCAGT AATAGT AACAGT AACAGT A
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
80149122 TTCAACACAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
AACAGT
Found at i:80149152 original size:45 final size:45
Alignment explanation
Indices: 80149099--80149211 Score: 176
Period size: 45 Copynumber: 2.5 Consensus size: 45
80149089 GTAACGGTAG
*
80149099 CAGTAATAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAAT
1 CAGTAATAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAAT
*
80149144 CTA-TAATAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAAT
1 C-AGTAATAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
80149189 CAGTAATAGTAACGGTAACAGTA
1 CAGTAATAGTAACGGTAACAGTA
80149212 ACAGTAGTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
44 1 0.02
45 60 0.95
46 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (45 bp):
CAGTAATAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAAT
Found at i:80150311 original size:19 final size:17
Alignment explanation
Indices: 80150277--80150313 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
80150267 CTTTCTTTGT
80150277 TTTTCTTTTATATTTTA
1 TTTTCTTTTATATTTTA
80150294 TTTTCTTTGTATTATTTTA
1 TTTTCTTT-TA-TATTTTA
80150313 T
1 T
80150314 CATTTAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTATATTTTA
Found at i:80150345 original size:25 final size:26
Alignment explanation
Indices: 80150315--80150364 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
80150305 TTATTTTATC
*
80150315 ATTTAACTAA-TATAAATTAT-TATTA
1 ATTTAA-TAATTATAAAATATCTATTA
80150340 ATTTAATAATTATAAAATATCTATT
1 ATTTAATAATTATAAAATATCTATT
80150365 TAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 15 0.68
26 4 0.18
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTAATAATTATAAAATATCTATTA
Found at i:80152152 original size:14 final size:14
Alignment explanation
Indices: 80152133--80152160 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80152123 TAAAGATTAA
80152133 AACTCATAACACAT
1 AACTCATAACACAT
80152147 AACTCATAACACAT
1 AACTCATAACACAT
80152161 TTAGAGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
AACTCATAACACAT
Found at i:80154921 original size:19 final size:19
Alignment explanation
Indices: 80154899--80154990 Score: 66
Period size: 19 Copynumber: 4.8 Consensus size: 19
80154889 TGAAAATTTA
80154899 AAAAATATATAAAAATCAT
1 AAAAATATATAAAAATCAT
* *
80154918 AAAAATGTA-AAGAAATTAT
1 AAAAATATATAA-AAATCAT
*
80154937 AAAAAGTATATATAAACTC-T
1 AAAAA-TATATA-AAAATCAT
* *
80154957 -AAAATATATATGAAATAAT
1 AAAAATATATA-AAAATCAT
*
80154976 -TAAATATATAAAAAT
1 AAAAATATATAAAAAT
80154991 TCAGGAAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
18 16 0.28
19 33 0.57
20 4 0.07
21 4 0.07
22 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAAATATATAAAAATCAT
Found at i:80155046 original size:34 final size:35
Alignment explanation
Indices: 80154935--80155067 Score: 107
Period size: 34 Copynumber: 3.8 Consensus size: 35
80154925 TAAAGAAATT
*
80154935 ATAAAAAGTATATATAAACTCT-AAAATATATATG
1 ATAAAAAATATATATAAACTCTAAAAATATATATG
* * * * *
80154969 AAATAATTAAATATATAAAAATTC-AGGAAAAAATATATT
1 --ATAA-AAAATATATATAAACTCTA--AAAATATATATG
80155008 ATAAAAAATAT-TATAAACTCTAAAAATATATATG
1 ATAAAAAATATATATAAACTCTAAAAATATATATG
* *
80155042 ATAAATAATTTAT-TAAA--CTAAAAATA
1 ATAAAAAATATATATAAACTCTAAAAATA
80155068 GATTTTATTA
Statistics
Matches: 78, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
32 9 0.12
34 23 0.29
35 8 0.10
36 11 0.14
37 17 0.22
39 10 0.13
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (35 bp):
ATAAAAAATATATATAAACTCTAAAAATATATATG
Found at i:80158633 original size:23 final size:23
Alignment explanation
Indices: 80158603--80158648 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
80158593 GTGAAAAAAT
80158603 CAGGTAGAAGCCCAATTCATTGA
1 CAGGTAGAAGCCCAATTCATTGA
*
80158626 CAGGTAGAAGCTCAATTCATTGA
1 CAGGTAGAAGCCCAATTCATTGA
80158649 AGGAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (23 bp):
CAGGTAGAAGCCCAATTCATTGA
Found at i:80159940 original size:201 final size:201
Alignment explanation
Indices: 80159595--80159996 Score: 804
Period size: 201 Copynumber: 2.0 Consensus size: 201
80159585 CAGACTACAT
80159595 GGCTGTTAGCCCAAGCATTCCTAATTGAGACATTTGCTCAAGTGAGAGCATACACCATCACGGAA
1 GGCTGTTAGCCCAAGCATTCCTAATTGAGACATTTGCTCAAGTGAGAGCATACACCATCACGGAA
80159660 GAAAGTAACAAGAAAACAGACTCCAGAAGTTCGACTGTTTAAATTTGTAAGCGTGCATCTTTACC
66 GAAAGTAACAAGAAAACAGACTCCAGAAGTTCGACTGTTTAAATTTGTAAGCGTGCATCTTTACC
80159725 GATAGATCTTAAGATTATGATTTGAAGTAGAACATATTTCTTTCTTAAAGTGCAAAGGGATATAC
131 GATAGATCTTAAGATTATGATTTGAAGTAGAACATATTTCTTTCTTAAAGTGCAAAGGGATATAC
80159790 TAAATG
196 TAAATG
80159796 GGCTGTTAGCCCAAGCATTCCTAATTGAGACATTTGCTCAAGTGAGAGCATACACCATCACGGAA
1 GGCTGTTAGCCCAAGCATTCCTAATTGAGACATTTGCTCAAGTGAGAGCATACACCATCACGGAA
80159861 GAAAGTAACAAGAAAACAGACTCCAGAAGTTCGACTGTTTAAATTTGTAAGCGTGCATCTTTACC
66 GAAAGTAACAAGAAAACAGACTCCAGAAGTTCGACTGTTTAAATTTGTAAGCGTGCATCTTTACC
80159926 GATAGATCTTAAGATTATGATTTGAAGTAGAACATATTTCTTTCTTAAAGTGCAAAGGGATATAC
131 GATAGATCTTAAGATTATGATTTGAAGTAGAACATATTTCTTTCTTAAAGTGCAAAGGGATATAC
80159991 TAAATG
196 TAAATG
80159997 AGAGGCATGC
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 201 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (201 bp):
GGCTGTTAGCCCAAGCATTCCTAATTGAGACATTTGCTCAAGTGAGAGCATACACCATCACGGAA
GAAAGTAACAAGAAAACAGACTCCAGAAGTTCGACTGTTTAAATTTGTAAGCGTGCATCTTTACC
GATAGATCTTAAGATTATGATTTGAAGTAGAACATATTTCTTTCTTAAAGTGCAAAGGGATATAC
TAAATG
Found at i:80165063 original size:210 final size:211
Alignment explanation
Indices: 80164700--80165123 Score: 661
Period size: 210 Copynumber: 2.0 Consensus size: 211
80164690 CAAGAAGTTT
* * * *
80164700 ATAGTCTTGATTGCTGGTTCAGTTTCCCAATAATAGTTGGGGTCAAGAAATAACATTTTGAGAGA
1 ATAGTCTTGATTGCTAGTTCAGTTTCCCAATAATAGTAGGGCTCAAGAAATAACATTGTGAGAGA
** * *
80164765 TGAGAGTGGTGCATATGATTCTTAACAAACCAACCAGTATACTGCACCAAATCAAGATGAAAATT
66 CAAGAGTGGTGCACATGATTCCTAACAAACCAACCAGTATACTGCACCAAATCAAGATGAAAATT
* * * *
80164830 CGATATTGTAATTAACGAATTTTCATATGATGTCCTAGTTTACTAAATACAGAAGAGTAGGTTTA
131 CGATATTGTAACTAAAGAATTTTCATATGATGCCCTAGTTTACTAAAGACAGAAGAGTAGGTTTA
80164895 ATATGGTTCAACTTCC
196 ATATGGTTCAACTTCC
* * * *
80164911 ATAGTCTTGATTGCTAGTTCAGTTTTCCGATATTGGTAGGGCTCAAGAAATAACATTGT-AGAGA
1 ATAGTCTTGATTGCTAGTTCAGTTTCCCAATAATAGTAGGGCTCAAGAAATAACATTGTGAGAGA
* *
80164975 CAAGGGTGGTGCACATGATTCCTAACAAACCAACCAGTATACTGCACCAAATCAAGGTGAAAATT
66 CAAGAGTGGTGCACATGATTCCTAACAAACCAACCAGTATACTGCACCAAATCAAGATGAAAATT
* *
80165040 TGATATTGTGACTAAAGAATTTTCATATGATGCCCTAGTTTACTAAAGACAGAAGAGTAGGTTTA
131 CGATATTGTAACTAAAGAATTTTCATATGATGCCCTAGTTTACTAAAGACAGAAGAGTAGGTTTA
80165105 ATATGGTTCAACTTCC
196 ATATGGTTCAACTTCC
80165121 ATA
1 ATA
80165124 AAGAAGTGGC
Statistics
Matches: 193, Mismatches: 20, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
210 142 0.74
211 51 0.26
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.31
Consensus pattern (211 bp):
ATAGTCTTGATTGCTAGTTCAGTTTCCCAATAATAGTAGGGCTCAAGAAATAACATTGTGAGAGA
CAAGAGTGGTGCACATGATTCCTAACAAACCAACCAGTATACTGCACCAAATCAAGATGAAAATT
CGATATTGTAACTAAAGAATTTTCATATGATGCCCTAGTTTACTAAAGACAGAAGAGTAGGTTTA
ATATGGTTCAACTTCC
Found at i:80167118 original size:6 final size:6
Alignment explanation
Indices: 80167109--80167141 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
80167099 ATAGTAGTAT
*
80167109 AGTACA AGTAGA AGTAGA AGTAGA AGTAGA AGT
1 AGTAGA AGTAGA AGTAGA AGTAGA AGTAGA AGT
80167142 TTATATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.30, T:0.18
Consensus pattern (6 bp):
AGTAGA
Found at i:80168564 original size:53 final size:53
Alignment explanation
Indices: 80168462--80168617 Score: 143
Period size: 53 Copynumber: 2.9 Consensus size: 53
80168452 CTTTTTCTTA
* * * ** *
80168462 TTTTGAATCGATTGTTTATATGTTCAAAAT-AATTGTTATGTCGGGATACTAAT
1 TTTTTAATAGATTGTTTATATGTT-TAAATCAATTGTTATGTAAGAATACTAAT
* * *
80168515 TTTTTAATTGATTGTTTACATGTTTAAATCAATTGTTATGTAAGAATACTACT
1 TTTTTAATAGATTGTTTATATGTTTAAATCAATTGTTATGTAAGAATACTAAT
* * * * * *
80168568 TCTTTTGAATAAATTATTTATACGGTTCAATCGATTGTTATGTAAGAATA
1 T-TTTT-AATAGATTGTTTATATGTTTAAATCAATTGTTATGTAAGAATA
80168618 TTATTTCTTC
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
52 4 0.05
53 41 0.49
54 4 0.05
55 35 0.42
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (53 bp):
TTTTTAATAGATTGTTTATATGTTTAAATCAATTGTTATGTAAGAATACTAAT
Found at i:80178611 original size:58 final size:58
Alignment explanation
Indices: 80178546--80178662 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
80178536 ACTGGGTAGG
*
80178546 TAAACCTTGCCCGTTTTTTGAGCTCGTATTAACTTAATATAGCTAACCCGGGGACTAT
1 TAAACCTTGCCCGTTTTTCGAGCTCGTATTAACTTAATATAGCTAACCCGGGGACTAT
80178604 TAAACCTTGCCCGTTTTTCGAGCTCGTATTAACTTAATATAGCTAACCCGGGGACTAT
1 TAAACCTTGCCCGTTTTTCGAGCTCGTATTAACTTAATATAGCTAACCCGGGGACTAT
80178662 T
1 T
80178663 TGCAAAACTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (58 bp):
TAAACCTTGCCCGTTTTTCGAGCTCGTATTAACTTAATATAGCTAACCCGGGGACTAT
Found at i:80185952 original size:3 final size:3
Alignment explanation
Indices: 80185944--80185972 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
80185934 TTATCAAAGA
80185944 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
80185973 AGACATTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:80189503 original size:15 final size:14
Alignment explanation
Indices: 80189470--80189506 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
80189460 ATTTTTCATA
80189470 TTTTTTATAGAAAT
1 TTTTTTATAGAAAT
*
80189484 TTTTTTATCGAAAT
1 TTTTTTATAGAAAT
80189498 TGTTTTTAT
1 T-TTTTTAT
80189507 TTTTTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (14 bp):
TTTTTTATAGAAAT
Found at i:80193864 original size:16 final size:17
Alignment explanation
Indices: 80193834--80193866 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80193824 TATGCAAAAG
*
80193834 AAAATTATTACTTCAAA
1 AAAATTAATACTTCAAA
80193851 AAAATTAATA-TTCAAA
1 AAAATTAATACTTCAAA
80193867 TATCATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATTAATACTTCAAA
Found at i:80197384 original size:26 final size:27
Alignment explanation
Indices: 80197355--80197415 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
80197345 TTCAAAAAAA
80197355 AAGAAAATAAAAAAG-AACA-A-ATGAGG
1 AAGAAAA-AAAAAAGAAACAGAGA-GAGG
*
80197381 AAGAGAAAAGAAAAGAAACAGAGAGAGG
1 AAGA-AAAAAAAAAGAAACAGAGAGAGG
80197409 AAGAAAA
1 AAGAAAA
80197416 CAGAACGTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 10 0.33
27 10 0.33
28 9 0.30
29 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.25, T:0.03
Consensus pattern (27 bp):
AAGAAAAAAAAAAGAAACAGAGAGAGG
Found at i:80198947 original size:22 final size:21
Alignment explanation
Indices: 80198922--80198991 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 21
80198912 GATTTTATGA
*
80198922 GATTTGGACTATGATGCCTACT
1 GATTTGCACTATG-TGCCTACT
* *
80198944 GATTTACACTATTGTGCCTATT
1 GATTTGCACTA-TGTGCCTACT
* *
80198966 GATTTGCACTACGGTGCCTAGT
1 GATTTGCACTA-TGTGCCTACT
80198988 GATT
1 GATT
80198992 CGCATTTTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 38 0.95
23 2 0.05
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (21 bp):
GATTTGCACTATGTGCCTACT
Found at i:80199059 original size:56 final size:56
Alignment explanation
Indices: 80198973--80199198 Score: 292
Period size: 56 Copynumber: 4.0 Consensus size: 56
80198963 ATTGATTTGC
* * *
80198973 ACTACGGTGCCTAGTGATTCGCAT-TTTGATGCGTACTGCTCAGCATTTTGGTGCCT
1 ACTACGGTGCCTAGTGATTCGC-TCTTCGATGCATACTGCTCAGCACTTTGGTGCCT
* *
80199029 ACTACGGTGCCTAGTGATTCGCTCTTTGATGCATACTGCTTAGCACTTTGGTGCCT
1 ACTACGGTGCCTAGTGATTCGCTCTTCGATGCATACTGCTCAGCACTTTGGTGCCT
* ** * * * *
80199085 ATTGTGGTGCCTAGTGATTCGCGCTTCGATACATACTGCTAAGCACTTTGGTGCTT
1 ACTACGGTGCCTAGTGATTCGCTCTTCGATGCATACTGCTCAGCACTTTGGTGCCT
* ** *
80199141 ATTATAGTGCCTAGTGATTCGCACTTCGATGCATACTGCTCAGCACTTTGGTGCCT
1 ACTACGGTGCCTAGTGATTCGCTCTTCGATGCATACTGCTCAGCACTTTGGTGCCT
80199197 AC
1 AC
80199199 CGTTAAAGCA
Statistics
Matches: 151, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
55 1 0.01
56 150 0.99
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
ACTACGGTGCCTAGTGATTCGCTCTTCGATGCATACTGCTCAGCACTTTGGTGCCT
Found at i:80201913 original size:19 final size:22
Alignment explanation
Indices: 80201874--80201913 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
80201864 AGAAACCCAA
80201874 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
80201896 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
80201914 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:80202015 original size:27 final size:26
Alignment explanation
Indices: 80201975--80202089 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
80201965 AGCATGGCTG
*
80201975 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* *
80202001 CCAGATACATATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
80202029 CCAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
80202056 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
80202083 CCAGAAC
1 CCAGAAC
80202090 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:80202039 original size:54 final size:54
Alignment explanation
Indices: 80201975--80202089 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
80201965 AGCATGGCTG
* *
80201975 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACATATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
80202029 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80202083 CCAGAAC
1 CCAGAAC
80202090 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 36 0.65
55 19 0.35
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80203733 original size:26 final size:26
Alignment explanation
Indices: 80203697--80203806 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
80203687 CATGGAATTC
80203697 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80203723 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
80203749 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
80203775 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
80203801 TTATCA
1 TTATCA
80203807 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80207889 original size:37 final size:37
Alignment explanation
Indices: 80207830--80207968 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
80207820 AGCTCAGATG
* * *
80207830 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80207867 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
80207904 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
80207941 TAATCTCCACACGTAGTCATCTGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
80207969 TAATCCCAAG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:80208247 original size:47 final size:47
Alignment explanation
Indices: 80208187--80208475 Score: 382
Period size: 47 Copynumber: 6.1 Consensus size: 47
80208177 ACACATTTCG
* * *
80208187 CATTAGCCATTCGGCCTTA-CTACATGTATACACGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATC-ACATATATACATGTTCACATTCATCA
* *
80208234 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
80208281 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
80208328 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
80208375 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
80208426 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
80208473 CAT
1 CAT
80208476 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 16, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
47 178 0.81
48 1 0.00
49 2 0.01
51 40 0.18
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:80227142 original size:116 final size:116
Alignment explanation
Indices: 80226938--80227171 Score: 459
Period size: 116 Copynumber: 2.0 Consensus size: 116
80226928 AATATTCTTG
80226938 AAAGCAGTTACCATAATGTAATTAACATTTGGGCAGTAATTACACTGAAATTGCAGTATGTTTGA
1 AAAGCAGTTACCATAATGTAATTAACATTTGGGCAGTAATTACACTGAAATTGCAGTATGTTTGA
80227003 GCAAGAAAAAGTTGTTGGATGTTGGTCCTGATGTGAAAGGTCATTACCTTA
66 GCAAGAAAAAGTTGTTGGATGTTGGTCCTGATGTGAAAGGTCATTACCTTA
*
80227054 AAAGCAGTTACCATAATGTAATTAACATTTGGGCAGTAATTACACTGAAATTGCAGTTTGTTTGA
1 AAAGCAGTTACCATAATGTAATTAACATTTGGGCAGTAATTACACTGAAATTGCAGTATGTTTGA
80227119 GCAAGAAAAAGTTGTTGGATGTTGGTCCTGATGTGAAAGGTCATTACCTTA
66 GCAAGAAAAAGTTGTTGGATGTTGGTCCTGATGTGAAAGGTCATTACCTTA
80227170 AA
1 AA
80227172 GAATTATAGA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (116 bp):
AAAGCAGTTACCATAATGTAATTAACATTTGGGCAGTAATTACACTGAAATTGCAGTATGTTTGA
GCAAGAAAAAGTTGTTGGATGTTGGTCCTGATGTGAAAGGTCATTACCTTA
Found at i:80227513 original size:25 final size:25
Alignment explanation
Indices: 80227479--80227529 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
80227469 TTCCTTATAA
**
80227479 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
80227504 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
80227529 A
1 A
80227530 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:80227528 original size:12 final size:12
Alignment explanation
Indices: 80227482--80227529 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
80227472 CTTATAAACT
80227482 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
80227494 TTCTATTAGGACT
1 TTAAATTAGGA-A
80227507 TTAAATTAGGAA
1 TTAAATTAGGAA
*
80227519 TTAGATTAGGA
1 TTAAATTAGGA
80227530 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:80233002 original size:23 final size:23
Alignment explanation
Indices: 80232972--80233015 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
80232962 ACATTTTATG
*
80232972 GGTGCAAGTGTTAGTGGCACTAC
1 GGTGCAAGTGATAGTGGCACTAC
80232995 GGTGCAAGTGATAGTGGCACT
1 GGTGCAAGTGATAGTGGCACT
80233016 TTAGTGCAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.16, G:0.36, T:0.25
Consensus pattern (23 bp):
GGTGCAAGTGATAGTGGCACTAC
Found at i:80233022 original size:23 final size:23
Alignment explanation
Indices: 80232973--80233028 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
80232963 CATTTTATGG
* *
80232973 GTGCAAGTGTTAGTGGCACTACG
1 GTGCAAGTGATAGTGGCACTACA
**
80232996 GTGCAAGTGATAGTGGCACTTTA
1 GTGCAAGTGATAGTGGCACTACA
80233019 GTGCAAGTGA
1 GTGCAAGTGA
80233029 CAGAAGCACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.27
Consensus pattern (23 bp):
GTGCAAGTGATAGTGGCACTACA
Found at i:80235698 original size:109 final size:109
Alignment explanation
Indices: 80235562--80235763 Score: 352
Period size: 109 Copynumber: 1.9 Consensus size: 109
80235552 TAAATTCAAT
*
80235562 AGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
80235627 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* *
80235671 AGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
80235735 ATTTCCAAACGCAAAATATTGCCTTATTT
65 ATTTCCAAACGCAAAACATTGCCTTATTT
80235764 GGAAATATTT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 1 0.01
109 87 0.99
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:80236154 original size:40 final size:40
Alignment explanation
Indices: 80236067--80236160 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
80236057 AATATGAAAG
*
80236067 ATATATATGTAT-TAGGAGATATAAAAATATAAATATCTAC
1 ATATATATGTATATAGAAGATATAAAAATATAAATA-CTAC
* * * * *
80236107 ATGTATATGTATATAGAAGTTATAAAAAATTTAAGTA-TAT
1 ATATATATGTATATAGAAGATAT-AAAAATATAAATACTAC
80236147 ATATATATGTATAT
1 ATATATATGTATAT
80236161 TCGTGAGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
40 26 0.58
41 8 0.18
42 11 0.24
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (40 bp):
ATATATATGTATATAGAAGATATAAAAATATAAATACTAC
Found at i:80236377 original size:24 final size:22
Alignment explanation
Indices: 80236350--80236400 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
80236340 ATATATGCAC
*
80236350 ATATATATATTAAGATATATGG
1 ATATATATAATAAGATATATGG
*
80236372 ATATATATAATAAGATATATAG
1 ATATATATAATAAGATATATGG
80236394 ATATATA
1 ATATATA
80236401 ACTAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
ATATATATAATAAGATATATGG
Found at i:80236401 original size:20 final size:21
Alignment explanation
Indices: 80236352--80236410 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
80236342 ATATGCACAT
* *
80236352 ATATATATTAAGATATATGGAT
1 ATATATAATAAGATATAT-GAG
80236374 ATATATAATAAGATATAT-AG
1 ATATATAATAAGATATATGAG
80236394 ATATATAACTAA-ATATA
1 ATATATAA-TAAGATATA
80236411 ATATTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 3 0.09
22 17 0.50
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATATAATAAGATATATGAG
Found at i:80238559 original size:88 final size:88
Alignment explanation
Indices: 80238282--80239222 Score: 1475
Period size: 88 Copynumber: 10.7 Consensus size: 88
80238272 AGCTTCAATG
** * * * *
80238282 CAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATGCAGGAAGGCAAGATC
1 CAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC
** * * * *
80238345 TGCT-TCTTTAACTAGCTCCA-CTG
65 TTTTGTCTTCAACCAGCTCTATC-A
* ** * * * *
80238368 CAATCGATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATC
1 CAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC
** * *
80238431 TGCT-TCTTTAACCAGCTCCA-CTA
65 TTTTGTCTTCAACCAGCTCTATC-A
* * * *
80238454 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
80238519 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
80238542 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
*
80238607 TTTGTCTTCAACCAGTTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
80238630 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
80238695 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
*
80238718 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCACTGTCAATGCAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
80238783 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
80238806 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
*
80238871 TTTGTCTTCAACCAGTTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
80238894 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
80238959 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
*
80238982 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCACTGTCAATGCAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
80239047 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
*
80239070 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGAAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
*
80239135 TTTGTCTTCAACCAGCTCCATCA
66 TTTGTCTTCAACCAGCTCTATCA
* *
80239158 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
80239223 GTAACTTCAT
Statistics
Matches: 817, Mismatches: 34, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
85 5 0.01
86 94 0.12
87 36 0.04
88 681 0.83
89 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (88 bp):
CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCT
TTTGTCTTCAACCAGCTCTATCA
Found at i:80241396 original size:7 final size:8
Alignment explanation
Indices: 80241371--80241400 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
80241361 CTATTTTGAC
80241371 TTTGATTTT
1 TTTGA-TTT
80241380 TTTGATTT
1 TTTGATTT
80241388 TTTGATTT
1 TTTGATTT
80241396 TTTGA
1 TTTGA
80241401 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:80243923 original size:19 final size:20
Alignment explanation
Indices: 80243894--80243942 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
80243884 CACTTCGTGA
* *
80243894 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAGATGCATG
*
80243913 CAATGTAATGCAGATGCATG
1 AAATGTAATGCAGATGCATG
80243933 AAATG-AATGC
1 AAATGTAATGC
80243943 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAGATGCATG
Found at i:80245462 original size:109 final size:109
Alignment explanation
Indices: 80245326--80245527 Score: 352
Period size: 109 Copynumber: 1.9 Consensus size: 109
80245316 TAAATTCAAT
*
80245326 AGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
80245391 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* *
80245435 AGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
80245499 ATTTCCAAACGCAAAATATTGCCTTATTT
65 ATTTCCAAACGCAAAACATTGCCTTATTT
80245528 GGAAATATTT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 1 0.01
109 87 0.99
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:80246139 original size:24 final size:22
Alignment explanation
Indices: 80246112--80246162 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
80246102 ATATATGCAC
*
80246112 ATATATATATTAAGATATATGG
1 ATATATATAATAAGATATATGG
*
80246134 ATATATATAATAAGATATATAG
1 ATATATATAATAAGATATATGG
80246156 ATATATA
1 ATATATA
80246163 ACTAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
ATATATATAATAAGATATATGG
Found at i:80246163 original size:20 final size:21
Alignment explanation
Indices: 80246114--80246172 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
80246104 ATATGCACAT
* *
80246114 ATATATATTAAGATATATGGAT
1 ATATATAATAAGATATAT-GAG
80246136 ATATATAATAAGATATAT-AG
1 ATATATAATAAGATATATGAG
80246156 ATATATAACTAA-ATATA
1 ATATATAA-TAAGATATA
80246173 ATATTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.41
21 3 0.09
22 17 0.50
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (21 bp):
ATATATAATAAGATATATGAG
Found at i:80248978 original size:21 final size:21
Alignment explanation
Indices: 80248952--80249002 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
80248942 TCAAACTCTT
*
80248952 ACAAAAAATGGCTAAATTGGA
1 ACAAAAAATGGCTAAATTGAA
80248973 ACAAAAAATGGCTAAATTGAA
1 ACAAAAAATGGCTAAATTGAA
80248994 ACAAAAAAT
1 ACAAAAAAT
80249003 AAAGAGGAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.59, C:0.10, G:0.14, T:0.18
Consensus pattern (21 bp):
ACAAAAAATGGCTAAATTGAA
Found at i:80250912 original size:9 final size:11
Alignment explanation
Indices: 80250888--80250913 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
80250878 GACAAAAGTC
80250888 CTCTCATAATT
1 CTCTCATAATT
80250899 CTCTCATAATT
1 CTCTCATAATT
80250910 CTCT
1 CTCT
80250914 TAAATTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCATAATT
Found at i:80256482 original size:126 final size:126
Alignment explanation
Indices: 80256255--80256568 Score: 502
Period size: 126 Copynumber: 2.5 Consensus size: 126
80256245 CCAAATAGGA
* * *
80256255 ACTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAATACATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGATAGTGCATCCT
* * * * *
80256320 GCTTGAAGCGTTTTGGACATTATTTGTTTAGGAACGTGTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAACGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * *
80256381 ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATGCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGATAGTGCATCCT
80256446 GCTTGAAACGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAACGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * *
80256507 ACTACCGTAGCAAAAGAGTATCCACGTGGAAGTTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGATAGTGCAT
80256569 TCTAATTTAA
Statistics
Matches: 172, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 172 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGATAGTGCATCCT
GCTTGAAACGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:80256670 original size:22 final size:23
Alignment explanation
Indices: 80256643--80256686 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
80256633 GTTAATTTAA
80256643 TTAATTAACCAT-AAACCCTAAT
1 TTAATTAACCATAAAACCCTAAT
*
80256665 TTAATTAACCCTAAAACCCTAA
1 TTAATTAACCATAAAACCCTAA
80256687 AGACAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (23 bp):
TTAATTAACCATAAAACCCTAAT
Found at i:80256870 original size:175 final size:174
Alignment explanation
Indices: 80256570--80256902 Score: 524
Period size: 175 Copynumber: 1.9 Consensus size: 174
80256560 ATAGTGCATT
* * *
80256570 CTAATTTAATTAAATAACCCTAAAAACCTTAAACCTTAATTTAATTGATTTTTTAAATTAATAGT
1 CTAATTTAATTAAATAACCCTAAAAACCATAAACCCTAATTTAATTAATTTTTTAAATTAATAGT
* *
80256635 TAATTTAATTAATTAACCATAAACCCTAATTTAATTAACCCTAAAACCCTAAAGACAATAAACTA
66 TAATTTAATTAATTAACCATAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAATA
80256700 CTAAACTCTTAAAATCC-TAACCCTAAACTTTTAAACAATAAATC
131 CTAAACTCTTAAAA-CCATAACCCTAAACTTTTAAACAATAAATC
* *
80256744 CTAATTTAATTAATTAACCCTAAAAATCATAAACCCTAATTTAATTAATTTTTTAAAATTAATAG
1 CTAATTTAATTAAATAACCCTAAAAACCATAAACCCTAATTTAATTAATTTTTT-AAATTAATAG
* * * *
80256809 TTAATTTAATTAATTAACCCTAAGCCCTAATTTAATTAGCCCTAAAACCCTGAACACAATAAAAT
65 TTAATTTAATTAATTAACCATAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAAT
* *
80256874 CCTAAACTCTTAAAACCATAACCTTAAAC
130 ACTAAACTCTTAAAACCATAACCCTAAAC
80256903 CCTAAAACCT
Statistics
Matches: 144, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
174 51 0.35
175 93 0.65
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.34
Consensus pattern (174 bp):
CTAATTTAATTAAATAACCCTAAAAACCATAAACCCTAATTTAATTAATTTTTTAAATTAATAGT
TAATTTAATTAATTAACCATAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAATA
CTAAACTCTTAAAACCATAACCCTAAACTTTTAAACAATAAATC
Found at i:80257552 original size:13 final size:14
Alignment explanation
Indices: 80257522--80257554 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80257512 TTAAATAAGT
80257522 AATTATCAAATCTA
1 AATTATCAAATCTA
*
80257536 AATTATCATAT-TA
1 AATTATCAAATCTA
80257549 AATTAT
1 AATTAT
80257555 TTTTCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTATCAAATCTA
Found at i:80297285 original size:57 final size:57
Alignment explanation
Indices: 80297210--80297320 Score: 145
Period size: 57 Copynumber: 1.9 Consensus size: 57
80297200 ATGGTGAAAC
* * *
80297210 GGAGAAATAGGAAACATTTGGAAATGATTA-AGATTTTCTCCAAAATGAAAATGAAAAT
1 GGAGAAATA-GAAACATTTGGAAATGAATATAG-TTTTATCCAAAAGGAAAATGAAAAT
*
80297268 GGAGAAATA-AAATCATTTGGAAATGAATATTGTTTTATCCAAAAGGAAAATGA
1 GGAGAAATAGAAA-CATTTGGAAATGAATATAGTTTTATCCAAAAGGAAAATGA
80297321 CCTAAAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
56 3 0.06
57 34 0.72
58 10 0.21
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.27
Consensus pattern (57 bp):
GGAGAAATAGAAACATTTGGAAATGAATATAGTTTTATCCAAAAGGAAAATGAAAAT
Found at i:80300228 original size:14 final size:14
Alignment explanation
Indices: 80300209--80300235 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80300199 GCTGCCATTT
80300209 TACTATTATGTTGC
1 TACTATTATGTTGC
80300223 TACTATTATGTTG
1 TACTATTATGTTG
80300236 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.52
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:80300303 original size:30 final size:30
Alignment explanation
Indices: 80300269--80300330 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
80300259 ACTTATTTTA
80300269 TTGTT-AATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTT-TTATTATTTTAAAGGCAT
*
80300299 TTGTTAAATTTTTTATTATTTTAGAGGCAT
1 TTGTTAAATTTTTTATTATTTTAAAGGCAT
80300329 TT
1 TT
80300331 ACTTGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTTAAATTTTTTATTATTTTAAAGGCAT
Found at i:80308709 original size:42 final size:42
Alignment explanation
Indices: 80308662--80308745 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
80308652 AACCTAATTG
80308662 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAA
*
80308704 GGAAAATAATTCCCTTATTTTAATAAACTACTAAAAGATAAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAA
80308746 ATAAATATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (42 bp):
GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAA
Found at i:80308807 original size:19 final size:19
Alignment explanation
Indices: 80308783--80308819 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
80308773 ATTTATTTTA
80308783 AGATTTATCTACCTAAATG
1 AGATTTATCTACCTAAATG
80308802 AGATTTATCTACCTAAAT
1 AGATTTATCTACCTAAAT
80308820 AACTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
AGATTTATCTACCTAAATG
Found at i:80312418 original size:18 final size:17
Alignment explanation
Indices: 80312393--80312433 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
80312383 AACCACTAGT
80312393 TGGGAAAAATAAACCCA
1 TGGGAAAAATAAACCCA
80312410 TGGGAAAAATAAACCCA
1 TGGGAAAAATAAACCCA
80312427 TGAGGAA
1 TG-GGAA
80312434 CGCGTGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.51, C:0.15, G:0.22, T:0.12
Consensus pattern (17 bp):
TGGGAAAAATAAACCCA
Found at i:80313352 original size:983 final size:984
Alignment explanation
Indices: 80311448--80313401 Score: 3838
Period size: 983 Copynumber: 2.0 Consensus size: 984
80311438 GACTATTGAA
80311448 GAACGCGTGAGTAAACTTAAGGAGTCCATGGAGGACGAAAAAAAGTCAGACAATGCGCTTGGGGA
1 GAACGCGTGAGTAAACTTAAGGAGTCCATGGAGGACGAAAAAAAGTCAGACAATGCGCTTGGGGA
80311513 AAGAATTTAGGACTTGAGGAAATAGTCTAGGGCCTTTGTGACCATGTGTCTCACTTCCAATAGAG
66 AAGAATTTAGGACTTGAGGAAATAGTCTAGGGCCTTTGTGACCATGTGTCTCACTTCCAATAGAG
80311578 ATAGCGTACAAGAGTTGTTAGCTTTCTAAAAGAAGAAGCTGACGGAGAGGAACAATGCTCTCGAG
131 ATAGCGTACAAGAGTTGTTAGCTTTCTAAAAGAAGAAGCTGACGGAGAGGAACAATGCTCTCGAG
80311643 GCCATGGTGATGGTTTTGAAGGAGGAAACAATGGTCACGACGATGGCTTTGAGCACAAGAATAGA
196 GCCATGGTGATGGTTTTGAAGGAGGAAACAATGGTCACGACGATGGCTTTGAGCACAAGAATAGA
80311708 GAAGCTCGAGGGAGGGCAGGCCTTGTGCTGAGCAACCATGGGGAAAGGAGTGGTAAGTGCAGCAC
261 GAAGCTCGAGGGAGGGCAGGCCTTGTGCTGAGCAACCATGGGGAAAGGAGTGGTAAGTGCAGCAC
*
80311773 TTAGTAACGAGGATGTCCCAAAGCTGAAAAAGTTTGTGGGGACAAAGTCTGTATGCGACATGGAA
326 TTAGTAACGAGGATGTCCCAAAGCTGAAAAAGTTTGTGGGGACAAAGTCTGCATGCGACATGGAA
80311838 AATTTCTTGTGGAAGATAGAAAACTACTCTGTGCCAAAGACATCACAGATGATGCGGTTAAGGTA
391 AATTTCTTGTGGAAGATAGAAAACTACTCTGTGCCAAAGACATCACAGATGATGCGGTTAAGGTA
80311903 AACACTACTTCAATGTTTCTTACTGGTATTTAGTTTTTATAGTGGCGAGACAGGATCACAGATAA
456 AACACTACTTCAATGTTTCTTACTGGTATTTAGTTTTTATAGTGGCGAGACAGGATCACAGATAA
*
80311968 AAGGTAAGGCGAGATTGGGACGTGGAAAGAGTTCCAATGTGAGTTGAAGGGACAGTTTTACCTAG
521 AAGGTAACGCGAGATTGGGACGTGGAAAGAGTTCCAATGTGAGTTGAAGGGACAGTTTTACCTAG
80312033 AGTTTACTGAGGAATAAGCTCAAGAAAAGTTGCAAAAGATAATGCAACAGGGCACAGTAGGGAGT
586 AGTTTACTGAGGAATAAGCTCAAGAAAAGTTGCAAAAGATAATGCAACAGGGCACAGTAGGGAGT
80312098 ATGTTCGAAAGTTCAAGGAACCCATGCTCCAAGTTTCAAATGTGACTGAAAAAGAAGCATTACTT
651 ATGTTCGAAAGTTCAAGGAACCCATGCTCCAAGTTTCAAATGTGACTGAAAAAGAAGCATTACTT
80312163 GCTTTTCAAAATGGATTGAAGTCGTGCGTCAGACAGGATGTGGAACAAAAAGGTGTCCAGAAGCT
716 GCTTTTCAAAATGGATTGAAGTCGTGCGTCAGACAGGATGTGGAACAAAAAGGTGTCCAGAAGCT
80312228 TTCGGAAGCCATAACGATAGTAAAGTCCGTGGTCAAGCTTGGTCTAGGGAAAGATAAGCTGGGTC
781 TTCGGAAGCCATAACGATAGTAAAGTCCGTGGTCAAGCTTGGTCTAGGGAAAGATAAGCTGGGTC
*
80312293 TTCCAAGTATTAGGAAAAATGGCGTATGTAAAAAGGATCACAAGAAAGATGTTGATGGCAATAGC
846 TTCCAAGTATGAGGAAAAATGGCGTATGTAAAAAGGATCACAAGAAAGATGTTGATGGCAATAGC
80312358 AATGGCGACAATGGTAGTAATGAAAAACCACTAGTTGGGAAAAATAAACCCATG-GGAAAAATAA
911 AATGGCGACAATGGTAGTAATGAAAAACCACTAGTTGGGAAAAATAAACCCATGAGGAAAAATAA
80312422 ACCCATGAG
976 ACCCATGAG
80312431 GAACGCGTGAGTAAACTTAAGGAGTCCATGGAGGACGAAAAAAAGTCAGACAATGCGCTTGGGGA
1 GAACGCGTGAGTAAACTTAAGGAGTCCATGGAGGACGAAAAAAAGTCAGACAATGCGCTTGGGGA
80312496 AAGAATTTAGGACTTGAGGAAATAGTCTAGGGCCTTTGTGACCATGTGTCTCACTTCCAATAGAG
66 AAGAATTTAGGACTTGAGGAAATAGTCTAGGGCCTTTGTGACCATGTGTCTCACTTCCAATAGAG
80312561 ATAGCGTACAAGAGTTGTTAGCTTTCTAAAAGAAGAAGCTGACGGAGAGGAACAATGCTCTCGAG
131 ATAGCGTACAAGAGTTGTTAGCTTTCTAAAAGAAGAAGCTGACGGAGAGGAACAATGCTCTCGAG
80312626 GCCATGGTGATGGTTTTGAAGGAGGAAACAATGGTCACGACGATGGCTTTGAGCACAAGAATAGA
196 GCCATGGTGATGGTTTTGAAGGAGGAAACAATGGTCACGACGATGGCTTTGAGCACAAGAATAGA
* * *
80312691 GGAGCTCGAGGGAGGGCAGGCCTTGTGCTGGGCAACCATGGGGAAAGGAGTGGTAAGTGCAGTAC
261 GAAGCTCGAGGGAGGGCAGGCCTTGTGCTGAGCAACCATGGGGAAAGGAGTGGTAAGTGCAGCAC
80312756 TTAGTAACGAGGATGTCCCAAAGCTGAAAAAGTTTGTGGGGACAAAGTCTGCATGCGACATGGAA
326 TTAGTAACGAGGATGTCCCAAAGCTGAAAAAGTTTGTGGGGACAAAGTCTGCATGCGACATGGAA
80312821 AATTTCTTGTGGAAGATAGAAAACTACTCTGTGCCAAAGACATCACAGATGATGCGGTTAAGGTA
391 AATTTCTTGTGGAAGATAGAAAACTACTCTGTGCCAAAGACATCACAGATGATGCGGTTAAGGTA
80312886 AACACTACTTCAATGTTTCTTACTGGTATTTAGTTTTTATAGTGGCGAGACAGGATCACAGATAA
456 AACACTACTTCAATGTTTCTTACTGGTATTTAGTTTTTATAGTGGCGAGACAGGATCACAGATAA
80312951 AAGGTAACGCGAGATTGGGACGTGGAAAGAGTTCCAATGTGAGTTGAAGGGACAGTTTTACCTAG
521 AAGGTAACGCGAGATTGGGACGTGGAAAGAGTTCCAATGTGAGTTGAAGGGACAGTTTTACCTAG
80313016 AGTTTACTGAGGAATAAGCTCAAGAAAAGTTGCAAAAGATAATGCAACAGGGCACAGTAGGGAGT
586 AGTTTACTGAGGAATAAGCTCAAGAAAAGTTGCAAAAGATAATGCAACAGGGCACAGTAGGGAGT
80313081 ATGTTCGAAAGTTCAAGGAACCCATGCTCCAAGTTTCAAATGTGACTGAAAAAGAAGCATTACTT
651 ATGTTCGAAAGTTCAAGGAACCCATGCTCCAAGTTTCAAATGTGACTGAAAAAGAAGCATTACTT
80313146 GCTTTTCAAAATGGATTGAAGTCGTGCGTCAGACAGGATGTGGAACAAAAAGGTGTCCAGAAGCT
716 GCTTTTCAAAATGGATTGAAGTCGTGCGTCAGACAGGATGTGGAACAAAAAGGTGTCCAGAAGCT
80313211 TTCGGAAGCCATAACGATAGTAAAGTCCGTGGTCAAGCTTGGTCTAGGGAAAGATAAGCTGGGTC
781 TTCGGAAGCCATAACGATAGTAAAGTCCGTGGTCAAGCTTGGTCTAGGGAAAGATAAGCTGGGTC
*
80313276 TTCCAAGTCTGAGGAAAAATGGCGTATGTAAAAAGGATCACAAGAAAGATGTTGATGGCAATAGC
846 TTCCAAGTATGAGGAAAAATGGCGTATGTAAAAAGGATCACAAGAAAGATGTTGATGGCAATAGC
80313341 AATGGCGACAATGGTAGTAATGAAAAACCACTAGTTGGGAAAAATAAACCCATGAGGAAAA
911 AATGGCGACAATGGTAGTAATGAAAAACCACTAGTTGGGAAAAATAAACCCATGAGGAAAA
80313402 TAGAAAAGTT
Statistics
Matches: 963, Mismatches: 7, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
983 957 0.99
984 6 0.01
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (984 bp):
GAACGCGTGAGTAAACTTAAGGAGTCCATGGAGGACGAAAAAAAGTCAGACAATGCGCTTGGGGA
AAGAATTTAGGACTTGAGGAAATAGTCTAGGGCCTTTGTGACCATGTGTCTCACTTCCAATAGAG
ATAGCGTACAAGAGTTGTTAGCTTTCTAAAAGAAGAAGCTGACGGAGAGGAACAATGCTCTCGAG
GCCATGGTGATGGTTTTGAAGGAGGAAACAATGGTCACGACGATGGCTTTGAGCACAAGAATAGA
GAAGCTCGAGGGAGGGCAGGCCTTGTGCTGAGCAACCATGGGGAAAGGAGTGGTAAGTGCAGCAC
TTAGTAACGAGGATGTCCCAAAGCTGAAAAAGTTTGTGGGGACAAAGTCTGCATGCGACATGGAA
AATTTCTTGTGGAAGATAGAAAACTACTCTGTGCCAAAGACATCACAGATGATGCGGTTAAGGTA
AACACTACTTCAATGTTTCTTACTGGTATTTAGTTTTTATAGTGGCGAGACAGGATCACAGATAA
AAGGTAACGCGAGATTGGGACGTGGAAAGAGTTCCAATGTGAGTTGAAGGGACAGTTTTACCTAG
AGTTTACTGAGGAATAAGCTCAAGAAAAGTTGCAAAAGATAATGCAACAGGGCACAGTAGGGAGT
ATGTTCGAAAGTTCAAGGAACCCATGCTCCAAGTTTCAAATGTGACTGAAAAAGAAGCATTACTT
GCTTTTCAAAATGGATTGAAGTCGTGCGTCAGACAGGATGTGGAACAAAAAGGTGTCCAGAAGCT
TTCGGAAGCCATAACGATAGTAAAGTCCGTGGTCAAGCTTGGTCTAGGGAAAGATAAGCTGGGTC
TTCCAAGTATGAGGAAAAATGGCGTATGTAAAAAGGATCACAAGAAAGATGTTGATGGCAATAGC
AATGGCGACAATGGTAGTAATGAAAAACCACTAGTTGGGAAAAATAAACCCATGAGGAAAAATAA
ACCCATGAG
Found at i:80314830 original size:21 final size:22
Alignment explanation
Indices: 80314798--80314839 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
80314788 CACTAGAACA
*
80314798 ATGTAACAAAAT-CAATAAAAT
1 ATGTAACAAAATGAAATAAAAT
80314819 ATGT-ACATAAATGAAATAAAA
1 ATGTAACA-AAATGAAATAAAA
80314840 GAAGAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 3 0.17
21 8 0.44
22 7 0.39
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (22 bp):
ATGTAACAAAATGAAATAAAAT
Done.