Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 245 of 320
Found at i:80321363 original size:21 final size:21
Alignment explanation
Indices: 80321318--80321466 Score: 126
Period size: 21 Copynumber: 7.2 Consensus size: 21
80321308 CAAATGAGCC
* *
80321318 AACAGAAGCTC-GAA-AGCTG
1 AACAGAAGCTCATAAGAGCTT
*
80321337 AACAGAAGCTCATAAGAGTTT
1 AACAGAAGCTCATAAGAGCTT
* *
80321358 AACAGAAGCACATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTT
* *
80321379 AACAGAAGCTCGA-AAAAGCTA
1 AACAGAAGCTC-ATAAGAGCTT
* *
80321400 AACAAAAGCTCTTAAGAGCTT
1 AACAGAAGCTCATAAGAGCTT
*
80321421 AACAGAAGCTCGA-AAGAGCTG
1 AACAGAAGCTC-ATAAGAGCTT
* ** *
80321442 AATAGAAGCTTGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTT
80321463 AACA
1 AACA
80321467 AAAAGCAAAA
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
19 11 0.11
20 2 0.02
21 89 0.86
22 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTT
Found at i:80321416 original size:63 final size:62
Alignment explanation
Indices: 80321318--80321469 Score: 191
Period size: 63 Copynumber: 2.4 Consensus size: 62
80321308 CAAATGAGCC
* * *
80321318 AACAGAAGCTCG-AAAGCTGAACAGAAGCTCATAAGAGTTTAACAGAAGCAC-ATAAGAGCTG
1 AACAGAAGCTCGAAAAGCTAAACAAAAGCTCATAAGAGCTTAACAGAAGCACGA-AAGAGCTG
* *
80321379 AACAGAAGCTCGAAAAAGCTAAACAAAAGCTCTTAAGAGCTTAACAGAAGCTCGAAAGAGCTG
1 AACAGAAGCTCG-AAAAGCTAAACAAAAGCTCATAAGAGCTTAACAGAAGCACGAAAGAGCTG
* * *
80321442 AATAGAAGCTTGTAAGAGCTAAACAAAA
1 AACAGAAGCTCG-AAAAGCTAAACAAAA
80321470 AGCAAAACAT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
61 12 0.15
63 66 0.84
64 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (62 bp):
AACAGAAGCTCGAAAAGCTAAACAAAAGCTCATAAGAGCTTAACAGAAGCACGAAAGAGCTG
Found at i:80321451 original size:42 final size:42
Alignment explanation
Indices: 80321318--80321466 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 42
80321308 CAAATGAGCC
* * *
80321318 AACAGAAGCTC-GAA-AGCTGAACAGAAGCTC-ATAAGAGTTT
1 AACAGAAGCTCTTAAGAGCTGAACAGAAGCTCGA-AAGAGCTA
* * *
80321358 AACAGAAGCACATAAGAGCTGAACAGAAGCTCGAAAAAGCTA
1 AACAGAAGCTCTTAAGAGCTGAACAGAAGCTCGAAAGAGCTA
* * *
80321400 AACAAAAGCTCTTAAGAGCTTAACAGAAGCTCGAAAGAGCTG
1 AACAGAAGCTCTTAAGAGCTGAACAGAAGCTCGAAAGAGCTA
* *
80321442 AATAGAAGCT-TGTAAGAGCTAAACA
1 AACAGAAGCTCT-TAAGAGCTGAACA
80321467 AAAAGCAAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 10 0.11
41 3 0.03
42 77 0.85
43 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.15
Consensus pattern (42 bp):
AACAGAAGCTCTTAAGAGCTGAACAGAAGCTCGAAAGAGCTA
Found at i:80322125 original size:21 final size:21
Alignment explanation
Indices: 80322101--80322155 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
80322091 TTAATTAGTT
80322101 ATCGAAACGTTAAAATTTTTC
1 ATCGAAACGTTAAAATTTTTC
80322122 ATCGAAACGTTAAAATTTTTC
1 ATCGAAACGTTAAAATTTTTC
* *
80322143 ATCAAAACTTTAA
1 ATCGAAACGTTAA
80322156 TACTACCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (21 bp):
ATCGAAACGTTAAAATTTTTC
Found at i:80326313 original size:41 final size:41
Alignment explanation
Indices: 80326256--80326337 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
80326246 GCAGACTTAG
*
80326256 TTATTTTGTTACGTGTCATAATTGTCTAGGTTTAAAATACT
1 TTATTTTGTTACGTGTCATAATTGTCCAGGTTTAAAATACT
80326297 TTATTTTGTTACGTGTCATAATTGTCCAGGTTTAAAATACT
1 TTATTTTGTTACGTGTCATAATTGTCCAGGTTTAAAATACT
80326338 ACTTATTGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.48
Consensus pattern (41 bp):
TTATTTTGTTACGTGTCATAATTGTCCAGGTTTAAAATACT
Found at i:80328119 original size:15 final size:15
Alignment explanation
Indices: 80328101--80328150 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
80328091 TTTATTGAGT
80328101 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
80328116 TTATTTTGATTGAAT
1 TTATATTGATTGAAA
80328131 TTATATTGATTG-AA
1 TTATATTGATTGAAA
80328145 TTATAT
1 TTATAT
80328151 AATATACATG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 7 0.23
15 24 0.77
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:80334265 original size:47 final size:47
Alignment explanation
Indices: 80334201--80334311 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
80334191 GACATTGAGT
*
80334201 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
80334248 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
80334295 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
80334312 CATATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:80339735 original size:21 final size:21
Alignment explanation
Indices: 80339692--80339884 Score: 196
Period size: 21 Copynumber: 9.3 Consensus size: 21
80339682 TAAATGAGCC
*
80339692 AACAGAAGCTCG-AA-AGCTG
1 AACAGAAGCTCGTAAGAGCTA
*
80339711 AACAGAAGCTTGTAAGAGCTA
1 AACAGAAGCTCGTAAGAGCTA
* * **
80339732 AACAGAAACTCATAAGATTTGA
1 AACAGAAGCTCGTAAGAGCT-A
80339754 AA-AGAAGCTCGTAAGAGCTA
1 AACAGAAGCTCGTAAGAGCTA
* ** *
80339774 AACAAAAGCTCAAAAGAGCTT
1 AACAGAAGCTCGTAAGAGCTA
*
80339795 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTA
*
80339816 AACAGAAGCTCGTAAGGGCT-
1 AACAGAAGCTCGTAAGAGCTA
* *
80339836 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTA
***
80339857 AACAGAAGCTTACAAGAGCTA
1 AACAGAAGCTCGTAAGAGCTA
80339878 AACAGAA
1 AACAGAA
80339885 AGCAAAACAT
Statistics
Matches: 144, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
19 11 0.08
20 23 0.16
21 107 0.74
22 3 0.02
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTA
Found at i:80342730 original size:13 final size:13
Alignment explanation
Indices: 80342714--80342739 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80342704 AGTTTAGTAT
80342714 TATTTTTTAAAAA
1 TATTTTTTAAAAA
80342727 TATTTTTTAAAAA
1 TATTTTTTAAAAA
80342740 AAAAAAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTTTTTAAAAA
Found at i:80343472 original size:31 final size:31
Alignment explanation
Indices: 80343382--80343475 Score: 122
Period size: 31 Copynumber: 3.1 Consensus size: 31
80343372 CAATATTTTG
*
80343382 TAAAATT-TAGATTAAATCAAAATTTTATGTA
1 TAAAATTATACATTAAATCAAAA-TTTATGTA
* *
80343413 TAAATTTATACA--AAATCAAAGTTTATGTA
1 TAAAATTATACATTAAATCAAAATTTATGTA
*
80343442 TAAAATTATACATTAAACCAAAATTTATGTA
1 TAAAATTATACATTAAATCAAAATTTATGTA
80343473 TAA
1 TAA
80343476 CTTTAAGATT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
29 19 0.35
30 8 0.15
31 24 0.44
32 3 0.06
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.38
Consensus pattern (31 bp):
TAAAATTATACATTAAATCAAAATTTATGTA
Found at i:80347989 original size:69 final size:69
Alignment explanation
Indices: 80347878--80348016 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
80347868 CAAGACTCTA
*
80347878 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
80347943 CCTG
66 CCTG
80347947 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
80348012 CCTG
66 CCTG
80348016 T
1 T
80348017 TTTTCCTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:80354701 original size:40 final size:40
Alignment explanation
Indices: 80354657--80354745 Score: 128
Period size: 39 Copynumber: 2.2 Consensus size: 40
80354647 TAAAAAATAT
* *
80354657 TTATATTAAAAAAATAACCA-TAAATATAATAAATGTTTTA
1 TTATATTAAAAAAATAA-AATTAAATATAATAAATATTTTA
*
80354697 TTATATT-AAAAACTAAAATTAAATATAATAAATATTTTA
1 TTATATTAAAAAAATAAAATTAAATATAATAAATATTTTA
80354736 TTATATTAAA
1 TTATATTAAA
80354746 TATAATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 34 0.77
40 9 0.20
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.40
Consensus pattern (40 bp):
TTATATTAAAAAAATAAAATTAAATATAATAAATATTTTA
Found at i:80355203 original size:15 final size:15
Alignment explanation
Indices: 80355183--80355211 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80355173 CGTATTGGGA
80355183 GTTGGCTTAATAGGG
1 GTTGGCTTAATAGGG
80355198 GTTGGCTTAATAGG
1 GTTGGCTTAATAGG
80355212 TGTATTTCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.38, T:0.34
Consensus pattern (15 bp):
GTTGGCTTAATAGGG
Found at i:80361107 original size:26 final size:26
Alignment explanation
Indices: 80361060--80361111 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80361050 AATGGAGTAG
* **
80361060 AGAGTGTCACGCAATCGCAATATTTT
1 AGAGTGTCAAGCAATAACAATATTTT
*
80361086 AGAGTGTCAAGCAATAATAATATTTT
1 AGAGTGTCAAGCAATAACAATATTTT
80361112 TATGCTGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (26 bp):
AGAGTGTCAAGCAATAACAATATTTT
Found at i:80366764 original size:21 final size:21
Alignment explanation
Indices: 80366731--80366771 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80366721 ATTGAAATGG
80366731 TTGTGAATAAAATGGCATGTT
1 TTGTGAATAAAATGGCATGTT
* *
80366752 TTGTGTATTAAATGGCATGT
1 TTGTGAATAAAATGGCATGT
80366772 CTTGGTTGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.41
Consensus pattern (21 bp):
TTGTGAATAAAATGGCATGTT
Found at i:80378093 original size:6 final size:6
Alignment explanation
Indices: 80378082--80378131 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
80378072 TTAGCTGGTC
* * * * *
80378082 TTGTTA TTGTTA TTGTTG TTGTTG TTGTTA TTATTA TTATTA TTATTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
80378130 TT
1 TT
80378132 ATTTGTGGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
TTGTTA
Found at i:80378115 original size:3 final size:3
Alignment explanation
Indices: 80378109--80378134 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80378099 GTTGTTGTTG
80378109 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
80378135 TGTGGTTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:80382239 original size:27 final size:27
Alignment explanation
Indices: 80382207--80382260 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
80382197 TTTGCTGTCT
80382207 ACAGGGAATGAGATTGATTAATTGTTC
1 ACAGGGAATGAGATTGATTAATTGTTC
80382234 ACAGGGAATGAGATTGATTAATTGTTC
1 ACAGGGAATGAGATTGATTAATTGTTC
80382261 TTGTATCGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (27 bp):
ACAGGGAATGAGATTGATTAATTGTTC
Found at i:80389320 original size:15 final size:15
Alignment explanation
Indices: 80389300--80389330 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80389290 ATTACATAAT
80389300 ATATAAAATAACATA
1 ATATAAAATAACATA
*
80389315 ATATAAAATATCATA
1 ATATAAAATAACATA
80389330 A
1 A
80389331 ATTTAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
ATATAAAATAACATA
Found at i:80390302 original size:23 final size:23
Alignment explanation
Indices: 80390246--80390302 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
80390236 ATACTCATAT
* **
80390246 TTGTATTATTAAAATATTTATATT
1 TTGTAATA-TAAAATATTTATAAA
* *
80390270 TTATAGTATAAAATATTTATAAA
1 TTGTAATATAAAATATTTATAAA
80390293 TTGTAATATA
1 TTGTAATATA
80390303 TAATTATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (23 bp):
TTGTAATATAAAATATTTATAAA
Found at i:80394512 original size:25 final size:25
Alignment explanation
Indices: 80394477--80394556 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
80394467 CTCTCTCTCA
* *
80394477 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATGTAACGGGAAGCTCATGCG
* *
80394502 AGCCATGTAACGGGAAGCTTATCCG
1 AGCCATGTAACGGGAAGCTCATGCG
* *
80394527 AGCTATGTAACAGGAAGCTCATGCG
1 AGCCATGTAACGGGAAGCTCATGCG
80394552 AGCCA
1 AGCCA
80394557 ATAACGAGTA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.19
Consensus pattern (25 bp):
AGCCATGTAACGGGAAGCTCATGCG
Found at i:80394514 original size:52 final size:50
Alignment explanation
Indices: 80394458--80394556 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 50
80394448 CGAGTAGTTA
* * *
80394458 AACGGGAAGCTCTCTCTCAAGCCATATAACGGGAAGCTCATGTGAGCCATGT
1 AACGGGAAGCT-TATC-CAAGCCATATAACAGGAAGCTCATGCGAGCCATGT
* * *
80394510 AACGGGAAGCTTATCCGAGCTATGTAACAGGAAGCTCATGCGAGCCA
1 AACGGGAAGCTTATCCAAGCCATATAACAGGAAGCTCATGCGAGCCA
80394557 ATAACGAGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 27 0.66
51 3 0.07
52 11 0.27
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.19
Consensus pattern (50 bp):
AACGGGAAGCTTATCCAAGCCATATAACAGGAAGCTCATGCGAGCCATGT
Found at i:80396563 original size:47 final size:47
Alignment explanation
Indices: 80396509--80396766 Score: 327
Period size: 47 Copynumber: 5.7 Consensus size: 47
80396499 GTTACATGTT
*
80396509 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
80396556 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
80396603 TAACCGTGGCATATTCACTTAGCATCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
80396641 TAACCGTGGTATATCCTCTTAGCACCACGTTAATGACTCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
80396688 TAACCGTGGCATATCCACTTAGCACCACATTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
** *
80396736 TAATAGTGGTATATCCACTTAGCACCACGTT
1 TAACCGTGGCATATCCACTTAGCACCACGTT
80396767 TTTTCATTTC
Statistics
Matches: 181, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
38 25 0.14
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 102 0.56
48 39 0.22
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:80396645 original size:85 final size:85
Alignment explanation
Indices: 80396556--80396724 Score: 284
Period size: 85 Copynumber: 2.0 Consensus size: 85
80396546 TCAATATATG
*
80396556 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATTCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* *
80396621 TTAGCATCACGTTACATGTT
66 TTAGCACCACATTACATGTT
* * *
80396641 TAACCGTGGTATATCCTCTTAGCACCACGTTAATGACTCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
80396706 TTAGCACCACATTACATGT
66 TTAGCACCACATTACATGT
80396725 ATCAATATGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACATTACATGTT
Found at i:80396662 original size:132 final size:133
Alignment explanation
Indices: 80396471--80396766 Score: 486
Period size: 132 Copynumber: 2.2 Consensus size: 133
80396461 TTAACATGTA
*
80396471 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
80396536 CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATAT
66 CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACATTACATGAATCAATAT
80396600 ATG
131 ATG
* * *
80396603 TAACCGTGGCATATTCACTTAGCATCACGTTACATGTTTAACCGTGGTATATCCTCTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
80396668 CGTTAATGACTCAATATATGTAACCGTGGCATATCCACTTAGCACCACATTACATGTATCAATAT
66 CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACATTACATGAATCAATAT
*
80396733 GTG
131 ATG
** *
80396736 TAATAGTGGTATATCCACTTAGCACCACGTT
1 TAACCGTGGCATATCCACTTAGCACCACGTT
80396767 TTTTCATTTC
Statistics
Matches: 150, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
132 111 0.74
133 39 0.26
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (133 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACATTACATGAATCAATAT
ATG
Found at i:80396750 original size:48 final size:47
Alignment explanation
Indices: 80396641--80396763 Score: 158
Period size: 48 Copynumber: 2.6 Consensus size: 47
80396631 GTTACATGTT
* * *
80396641 TAACCGTGGTATATCCTCTTAGCACCACGTTAATGACTCAATATATG
1 TAACAGTGGTATATCCACTTAGCACCACATTAATGACTCAATATATG
* * *
80396688 TAACCGTGGCATATCCACTTAGCACCACATTACATGTA-TCAATATGTG
1 TAACAGTGGTATATCCACTTAGCACCACATTA-ATG-ACTCAATATATG
*
80396736 TAATAGTGGTATATCCACTTAGCACCAC
1 TAACAGTGGTATATCCACTTAGCACCAC
80396764 GTTTTTTCAT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
47 29 0.43
48 37 0.55
49 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACAGTGGTATATCCACTTAGCACCACATTAATGACTCAATATATG
Found at i:80400665 original size:9 final size:9
Alignment explanation
Indices: 80400630--80400667 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
80400620 TATTTTTATT
*
80400630 TTTATTTGTT
1 TTTATTT-TA
80400640 TTTA-TTTA
1 TTTATTTTA
80400648 TTTATTTTA
1 TTTATTTTA
80400657 TTTATTTTA
1 TTTATTTTA
80400666 TT
1 TT
80400668 AAATTAGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 5 0.19
9 17 0.65
10 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTTATTTTA
Found at i:80400665 original size:14 final size:14
Alignment explanation
Indices: 80400630--80400667 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
80400620 TATTTTTATT
80400630 TTTATTTGT-TTTTA
1 TTTATTT-TATTTTA
80400644 TTTA-TTTATTTTA
1 TTTATTTTATTTTA
80400657 TTTATTTTATT
1 TTTATTTTATT
80400668 AAATTAGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.05
13 11 0.50
14 10 0.45
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:80401252 original size:15 final size:14
Alignment explanation
Indices: 80401196--80401312 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
80401186 TTATTATGTT
*
80401196 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
80401210 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
80401224 TACTATTATTATTTA
1 T-CTATTTTTATTTA
80401239 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
80401254 TCTATTTATATTTC
1 TCTATTTTTATTTA
*
80401268 TACTATTATTATATT-
1 T-CTATTTTTAT-TTA
80401283 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
* *
80401298 TTTATTTCTATTTA
1 TCTATTTTTATTTA
80401312 T
1 T
80401313 ATACTAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 24 0.29
15 37 0.45
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:80401265 original size:29 final size:28
Alignment explanation
Indices: 80401184--80401291 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
80401174 TTATTGCTAT
80401184 TATTATTATGTT-TCTATTTATATTTAT-
1 TATTATTAT-TTATCTATTTATATTTATC
*
80401211 T-TTGTTATTCTAATACTA-TTATTATTTATC
1 TATTATTATT-T-AT-CTATTTA-TATTTATC
* *
80401241 TAATTTTTATTTATCTATTTATATTTCTAC
1 T-ATTATTATTTATCTATTTATATTTAT-C
80401271 TATTATTATATT-TCTATTTAT
1 TATTATTAT-TTATCTATTTAT
80401292 TATATTTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 4 0.06
29 35 0.53
30 10 0.15
31 1 0.02
32 7 0.11
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (28 bp):
TATTATTATTTATCTATTTATATTTATC
Found at i:80401281 original size:17 final size:15
Alignment explanation
Indices: 80401259--80401304 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
80401249 ATTTATCTAT
80401259 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
80401276 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
80401291 TTATATTTTTATTT
1 TTATATTTCTATTT
80401305 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:80401348 original size:52 final size:54
Alignment explanation
Indices: 80401227--80401348 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 54
80401217 ATTCTAATAC
* * *
80401227 TATTATTATTTATC-TA-ATTTTTATTTATCTATTTATATTTCTACTATTATTA
1 TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
* *
80401279 TATT-TCTA--TTTATTATATTTTTA-TT-TCTATTTATA-TACTAATATTATTT
1 TATTAT-TATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
80401328 TCATTATTATTTTTCTTATAT
1 T-ATTATTATTTTTCTTATAT
80401349 ACGTTTTACT
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
49 12 0.21
50 17 0.30
51 6 0.11
52 22 0.39
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (54 bp):
TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
Found at i:80433222 original size:24 final size:24
Alignment explanation
Indices: 80433190--80433237 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
80433180 AAGGTCCAAG
80433190 TAGGAGATTGTTAGAAAATTTAGA
1 TAGGAGATTGTTAGAAAATTTAGA
80433214 TAGGAGATTGTTAGAAAATTTAGA
1 TAGGAGATTGTTAGAAAATTTAGA
80433238 CATCTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (24 bp):
TAGGAGATTGTTAGAAAATTTAGA
Found at i:80434498 original size:29 final size:28
Alignment explanation
Indices: 80434456--80434510 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
80434446 TTTTAATTTT
*
80434456 TATTTTATAATTAAATTTTAATTTAAAAA
1 TATTTTATAATTAAA-TTAAATTTAAAAA
* *
80434485 TATTTTTTATTTAAATTAAATTTAAA
1 TATTTTATAATTAAATTAAATTTAAA
80434511 CTGAGTCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
TATTTTATAATTAAATTAAATTTAAAAA
Found at i:80436682 original size:16 final size:17
Alignment explanation
Indices: 80436647--80436684 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
80436637 AAAATATTTT
80436647 TAACTATATTCAATACA
1 TAACTATATTCAATACA
80436664 TAAC-ATATTCAAATA-A
1 TAACTATATTC-AATACA
80436680 TAACT
1 TAACT
80436685 GGAGTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (17 bp):
TAACTATATTCAATACA
Found at i:80437410 original size:19 final size:22
Alignment explanation
Indices: 80437382--80437427 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 22
80437372 AGATCATACC
80437382 TTTT-AAATAAT-TTT-TAAT-
1 TTTTAAAATAATCTTTATAATG
80437400 TTTTAAAATAATCTTTATAATG
1 TTTTAAAATAATCTTTATAATG
80437422 TTTTAA
1 TTTTAA
80437428 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.17
19 7 0.29
20 3 0.12
21 4 0.17
22 6 0.25
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTAAAATAATCTTTATAATG
Found at i:80441012 original size:15 final size:15
Alignment explanation
Indices: 80440992--80441099 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
80440982 TTTATGGAAA
80440992 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
80441007 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
80441021 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
80441037 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
80441051 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
80441067 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
80441081 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
80441097 ATC
1 ATC
80441100 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:80441029 original size:30 final size:30
Alignment explanation
Indices: 80440986--80441109 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
80440976 TCCATATTTA
* *
80440986 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
80441016 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
80441046 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
80441076 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
80441107 TGG
1 TGG
80441110 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:80445666 original size:30 final size:30
Alignment explanation
Indices: 80445623--80445746 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
80445613 TCCATATTTA
* * *
80445623 TGGAAAATCAAAGATATGGGTATTAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
80445653 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
80445683 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
80445713 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
80445744 TGG
1 TGG
80445747 CATAATAAAA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 79 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:80445693 original size:15 final size:15
Alignment explanation
Indices: 80445675--80445724 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
80445665 GATATGGGTA
80445675 TCAAATATTGGAAAG
1 TCAAATATTGGAAAG
* **
80445690 TCAAAGATATGGGTA-
1 TCAAATAT-TGGAAAG
80445705 TCAAATATTGGAAAG
1 TCAAATATTGGAAAG
80445720 TCAAA
1 TCAAA
80445725 GATATGGGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 4 0.15
15 19 0.70
16 4 0.15
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.26
Consensus pattern (15 bp):
TCAAATATTGGAAAG
Found at i:80447279 original size:19 final size:19
Alignment explanation
Indices: 80447255--80447297 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
80447245 ATTAAAAAAG
* * *
80447255 TTTAAATTATTTTTATATT
1 TTTAAATAATTTTAATAAT
80447274 TTTAAATAATTTTAATAAT
1 TTTAAATAATTTTAATAAT
80447293 TTTAA
1 TTTAA
80447298 TTTCTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTAAATAATTTTAATAAT
Found at i:80447308 original size:28 final size:27
Alignment explanation
Indices: 80447265--80447323 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 27
80447255 TTTAAATTAT
80447265 TTTTATATTTTTAAATAATTTTAATAA
1 TTTTATATTTTTAAATAATTTTAATAA
*
80447292 TTTTA-ATTTCTTAAAATAATTTTTATAA
1 TTTTATATTT-TT-AAATAATTTTAATAA
80447320 TTTT
1 TTTT
80447324 TTAGAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 4 0.14
27 7 0.24
28 18 0.62
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (27 bp):
TTTTATATTTTTAAATAATTTTAATAA
Found at i:80463982 original size:10 final size:10
Alignment explanation
Indices: 80463967--80463996 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
80463957 GTAAGACATA
80463967 TTATAAATAT
1 TTATAAATAT
80463977 TTATAAATA-
1 TTATAAATAT
80463986 TTATAAATAT
1 TTATAAATAT
80463996 T
1 T
80463997 AAGTAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTATAAATAT
Found at i:80463989 original size:9 final size:9
Alignment explanation
Indices: 80463964--80463997 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
80463954 TTGGTAAGAC
80463964 ATATTATAA
1 ATATTATAA
80463973 ATATTTATAA
1 ATA-TTATAA
80463983 ATATTATAA
1 ATATTATAA
80463992 ATATTA
1 ATATTA
80463998 AGTAATGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATATTATAA
Found at i:80471116 original size:39 final size:39
Alignment explanation
Indices: 80471073--80471157 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
80471063 TACATAAATC
80471073 AACATCAAGTATAAGCACGTGTCAGTGTTAGTGTAGATA
1 AACATCAAGTATAAGCACGTGTCAGTGTTAGTGTAGATA
* *
80471112 AACATCAAGTATAAGCATGTGTCGGTGTTAGTGTAGATA
1 AACATCAAGTATAAGCACGTGTCAGTGTTAGTGTAGATA
80471151 AACATCA
1 AACATCA
80471158 TTGAATCGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.28
Consensus pattern (39 bp):
AACATCAAGTATAAGCACGTGTCAGTGTTAGTGTAGATA
Found at i:80473577 original size:33 final size:33
Alignment explanation
Indices: 80473530--80473622 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
80473520 GACTGGGTGG
*
80473530 GAGTGTTTGGTTGCTGGACAGGAGCTAGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTAGAATGC
* * * *
80473563 GAGTATTTGGTTGCTGGACAAGAGTTGGAATGC
1 GAGTGTTTGGTTGCTGGACAGGAGCTAGAATGC
*
80473596 GGGTGTTTGGTTGCTGGACAGGAGCTA
1 GAGTGTTTGGTTGCTGGACAGGAGCTA
80473623 AAAAAGCTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.20, C:0.10, G:0.40, T:0.30
Consensus pattern (33 bp):
GAGTGTTTGGTTGCTGGACAGGAGCTAGAATGC
Found at i:80475378 original size:29 final size:29
Alignment explanation
Indices: 80475345--80475404 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
80475335 TTAGCTATAT
80475345 GAAGAGACTACTATCCTAAAGATATGTGA
1 GAAGAGACTACTATCCTAAAGATATGTGA
80475374 GAAGAGACTACTATCCTAAAGATATGTGA
1 GAAGAGACTACTATCCTAAAGATATGTGA
80475403 GA
1 GA
80475405 CACACTTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (29 bp):
GAAGAGACTACTATCCTAAAGATATGTGA
Found at i:80478337 original size:25 final size:25
Alignment explanation
Indices: 80478303--80478354 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
80478293 TTGTGAAATG
80478303 GTCTCAGACAAGTTATGTTGGCTAT
1 GTCTCAGACAAGTTATGTTGGCTAT
80478328 GTCTCAGACAAGTTATGTTGGCTAT
1 GTCTCAGACAAGTTATGTTGGCTAT
80478353 GT
1 GT
80478355 TATAAAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (25 bp):
GTCTCAGACAAGTTATGTTGGCTAT
Found at i:80479546 original size:17 final size:18
Alignment explanation
Indices: 80479526--80479565 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
80479516 TCAATTATTC
80479526 AAAAAGAT-ATTTTATAT
1 AAAAAGATGATTTTATAT
*
80479543 AAAAAGCTGGATTTTATAT
1 AAAAAGAT-GATTTTATAT
80479562 AAAA
1 AAAA
80479566 GTTGGTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
19 13 0.65
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.35
Consensus pattern (18 bp):
AAAAAGATGATTTTATAT
Found at i:80484809 original size:28 final size:27
Alignment explanation
Indices: 80484756--80484809 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
80484746 AATAAACAGG
* * *
80484756 TGAAATAAAAAAATGAAAAGAAACAAT
1 TGAAAAAAAAAAAAGAAAACAAACAAT
*
80484783 TGAAAAAAAAAAGAAGAAAACAGACAA
1 TGAAAAAAAAAA-AAGAAAACAAACAA
80484810 AAAAATAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.72, C:0.06, G:0.13, T:0.09
Consensus pattern (27 bp):
TGAAAAAAAAAAAAGAAAACAAACAAT
Found at i:80487422 original size:38 final size:38
Alignment explanation
Indices: 80487330--80487484 Score: 150
Period size: 38 Copynumber: 3.9 Consensus size: 38
80487320 ATACAATTTT
** *
80487330 AAAAATATATTAAAAAAAGATGTGAATAGATAAATTTTGAAA
1 AAAAATAT-TTAAAAAAA-ATACGAATTGATAAATTTTG--A
*
80487372 AAAAATATTTTAAAAAAATACGAATTGATAAATTTTGA
1 AAAAATATTTAAAAAAAATACGAATTGATAAATTTTGA
* *
80487410 AAAAATATTTTAAGAAAATACG-ATCTGATAAATTTTGA
1 AAAAATATTTAAAAAAAATACGAAT-TGATAAATTTTGA
* * * *
80487448 AAAAAAATTAAAAATAAAATACAAAACTGATAAATTT
1 AAAAATATTTAAAA-AAAATAC-GAATTGATAAATTT
80487485 ATGGAATGTG
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
37 2 0.02
38 45 0.46
39 7 0.07
40 27 0.28
41 9 0.09
42 8 0.08
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.30
Consensus pattern (38 bp):
AAAAATATTTAAAAAAAATACGAATTGATAAATTTTGA
Found at i:80487512 original size:22 final size:23
Alignment explanation
Indices: 80487475--80487517 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
80487465 AATACAAAAC
* *
80487475 TGATAAATTTATGGAATGTGGAT
1 TGATAAATATATGGAACGTGGAT
80487498 TGATAAA-ATATGGAACGTGG
1 TGATAAATATATGGAACGTGG
80487518 CCACATGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.37, C:0.02, G:0.28, T:0.33
Consensus pattern (23 bp):
TGATAAATATATGGAACGTGGAT
Found at i:80490931 original size:42 final size:42
Alignment explanation
Indices: 80490885--80490966 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
80490875 GCCAATGTGT
* * *
80490885 ATATATAGCTGAAGCTATCTCAATCTAGCACACTAAGTGCAA
1 ATATATAACCGAAACTATCTCAATCTAGCACACTAAGTGCAA
* * *
80490927 ATATATAACCGAAACTATCTCGATTTCGCACACTAAGTGC
1 ATATATAACCGAAACTATCTCAATCTAGCACACTAAGTGC
80490967 CCTTAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (42 bp):
ATATATAACCGAAACTATCTCAATCTAGCACACTAAGTGCAA
Found at i:80498078 original size:15 final size:17
Alignment explanation
Indices: 80498043--80498080 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
80498033 GAATGAAAAG
*
80498043 AAAATTGAAAGAGTAGA
1 AAAATAGAAAGAGTAGA
80498060 AAAATAGAAAGA-T-GA
1 AAAATAGAAAGAGTAGA
80498075 AAAATA
1 AAAATA
80498081 TAATTGTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 1 0.05
17 11 0.55
ACGTcount: A:0.66, C:0.00, G:0.18, T:0.16
Consensus pattern (17 bp):
AAAATAGAAAGAGTAGA
Found at i:80509311 original size:3 final size:3
Alignment explanation
Indices: 80509303--80509369 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
80509293 TATAAAAAAT
80509303 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
80509351 AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG A
80509370 TAATATAGTC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:80512926 original size:19 final size:19
Alignment explanation
Indices: 80512875--80512926 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
80512865 CTTTAAAAAA
* *
80512875 TAAAAATTATTAAAATTAT
1 TAAAAATAATTAATATTAT
*
80512894 TAAAAATATTTAATATT-T
1 TAAAAATAATTAATATTAT
80512912 TGAAAAATAATTAAT
1 T-AAAAATAATTAAT
80512927 TGCTAATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 2 0.07
19 26 0.93
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
TAAAAATAATTAATATTAT
Found at i:80513300 original size:73 final size:70
Alignment explanation
Indices: 80513184--80513327 Score: 182
Period size: 73 Copynumber: 2.0 Consensus size: 70
80513174 TGAACGCAGC
* * *
80513184 ACATTTTCTTCGTTTTATTTAAAAAAAAAAAGAATGAGAAAGAAGCAAGAGCAAAATAACTATAA
1 ACATTTTCTTCGTTTTATTAAAAAAAAAAAAAAATGAGAAAGAAGCAAGAGCAAAACAACTATAA
80513249 AGAAA
66 AGAAA
* *
80513254 ACATTTTCTTTGTTCTT-TTAAAAAATAATAACAAAAATGAGAAAGAAGCAAGAGCACAACAACT
1 ACATTTTCTTCGTT-TTATTAAAAAA-AA-AA-AAAAATGAGAAAGAAGCAAGAGCAAAACAACT
* *
80513318 TTATAGAAA
62 ATAAAGAAA
80513327 A
1 A
80513328 GAAAACGAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
70 20 0.32
71 4 0.06
72 2 0.03
73 37 0.59
ACGTcount: A:0.52, C:0.10, G:0.12, T:0.26
Consensus pattern (70 bp):
ACATTTTCTTCGTTTTATTAAAAAAAAAAAAAAATGAGAAAGAAGCAAGAGCAAAACAACTATAA
AGAAA
Found at i:80513735 original size:21 final size:21
Alignment explanation
Indices: 80513711--80513750 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80513701 TTTTACAAAA
* *
80513711 ATATATTTTATTTTTTAATCC
1 ATATACTTTAATTTTTAATCC
80513732 ATATACTTTAATTTTTAAT
1 ATATACTTTAATTTTTAAT
80513751 TTTTAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATACTTTAATTTTTAATCC
Found at i:80513885 original size:29 final size:27
Alignment explanation
Indices: 80513857--80513926 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 27
80513847 ACAATTGAAT
*
80513857 TTAAATTTTTAAATTCAAAAGTAGAGAA
1 TTAAATTTTTAAATT-AAAAATAGAGAA
* * *
80513885 TTATATTCTTAAAAATAAAAATAGAGAAA
1 TTAAATT-TTTAAATTAAAAATAGAG-AA
80513914 TTAAA-TTTTAAAT
1 TTAAATTTTTAAAT
80513927 GTACAAAGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
27 5 0.15
28 16 0.48
29 12 0.36
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (27 bp):
TTAAATTTTTAAATTAAAAATAGAGAA
Found at i:80515478 original size:16 final size:15
Alignment explanation
Indices: 80515457--80515496 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
80515447 CGTTTGGTTC
80515457 ACTGTAATGGAATAGG
1 ACTGTAATGGAATA-G
*
80515473 ACTGTAATTGAATAG
1 ACTGTAATGGAATAG
80515488 AGCTGTAAT
1 A-CTGTAAT
80515497 ATGTAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:80515567 original size:44 final size:46
Alignment explanation
Indices: 80515482--80515571 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
80515472 GACTGTAATT
*
80515482 GAATAGAGCTGTAATATGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATATGTAATTCAACTGTTTGGTTGAATGGAATG
***
80515528 GAATAGAACTGTAATA-GT-ATTCTTGTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATATGTAATTCAACTGTTTGGTTGAATGGAATG
80515572 ATGTTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 23 0.57
45 2 0.05
46 15 0.38
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (46 bp):
GAATAGAACTGTAATATGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:80516191 original size:18 final size:18
Alignment explanation
Indices: 80516168--80516202 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
80516158 ACGTGGCAGT
80516168 CCAACTAGATTTTAAGTG
1 CCAACTAGATTTTAAGTG
80516186 CCAACTAGATTTTAAGT
1 CCAACTAGATTTTAAGT
80516203 ATATCTGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (18 bp):
CCAACTAGATTTTAAGTG
Found at i:80516287 original size:40 final size:40
Alignment explanation
Indices: 80516210--80516287 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
80516200 AGTATATCTG
* * * * *
80516210 TTAATGCATACTTCATCCGGTTAAATTATATAGTTTTCTA
1 TTAATACATACTTCATCCAGCTAAATTATACAATTTTCTA
80516250 TTAATACATACTTCATCCAGCTAAATTATACAATTTTC
1 TTAATACATACTTCATCCAGCTAAATTATACAATTTTC
80516288 ACTCAAATGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.42
Consensus pattern (40 bp):
TTAATACATACTTCATCCAGCTAAATTATACAATTTTCTA
Found at i:80517593 original size:19 final size:19
Alignment explanation
Indices: 80517569--80517614 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
80517559 ATACTAAATA
80517569 TATACATACTAGATACATG
1 TATACATACTAGATACATG
80517588 TATACATACTAGATACATG
1 TATACATACTAGATACATG
80517607 TATACATA
1 TATACATA
80517615 GTATAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (19 bp):
TATACATACTAGATACATG
Found at i:80517996 original size:27 final size:27
Alignment explanation
Indices: 80517959--80518010 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
80517949 TACAAGATAT
* * *
80517959 ATATATAATATGATGTTAAGAGTATAC
1 ATATAAAATATAATGTTAAAAGTATAC
80517986 ATATAAAATATAATGTTAAAAGTAT
1 ATATAAAATATAATGTTAAAAGTAT
80518011 GTATGCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.37
Consensus pattern (27 bp):
ATATAAAATATAATGTTAAAAGTATAC
Found at i:80518034 original size:20 final size:22
Alignment explanation
Indices: 80517995--80518034 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
80517985 CATATAAAAT
*
80517995 ATAATGTTAAAAGTATGTATGC
1 ATAATGTTAAAAGAATGTATGC
80518017 ATAATG-TAAAA-AATGTAT
1 ATAATGTTAAAAGAATGTAT
80518035 ATATATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (22 bp):
ATAATGTTAAAAGAATGTATGC
Found at i:80518060 original size:24 final size:25
Alignment explanation
Indices: 80518033--80518081 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
80518023 TAAAAAATGT
* *
80518033 ATATATATATAATATA-GTATTAAA
1 ATATATACATAATATATATATTAAA
*
80518057 ATATATGCATAATATATATATTAAA
1 ATATATACATAATATATATATTAAA
80518082 GAATAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (25 bp):
ATATATACATAATATATATATTAAA
Found at i:80523309 original size:21 final size:22
Alignment explanation
Indices: 80523283--80523337 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
80523273 GTGGGGGTCA
*
80523283 ACACGCCCATGTGAA-GTAGGC
1 ACACGCCCATGTGAAGGGAGGC
* *
80523304 ACACGCTCGTGTGAAGGGAGGC
1 ACACGCCCATGTGAAGGGAGGC
*
80523326 ACACGACCATGT
1 ACACGCCCATGT
80523338 TACTATAACA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.15
Consensus pattern (22 bp):
ACACGCCCATGTGAAGGGAGGC
Found at i:80524393 original size:22 final size:23
Alignment explanation
Indices: 80524367--80524412 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
80524357 CAACCAAACC
80524367 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
80524389 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
80524412 A
1 A
80524413 CGTTATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:80530267 original size:3 final size:3
Alignment explanation
Indices: 80530259--80530333 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
80530249 TCTACTTTAA
80530259 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80530307 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
80530334 GTGTTGTCAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:80530738 original size:21 final size:19
Alignment explanation
Indices: 80530702--80530745 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
80530692 TACTACGTTC
*
80530702 TATATATTTTTATATTATG
1 TATATATTTTAATATTATG
80530721 TATATATTTTAA-ATTAT-
1 TATATATTTTAATATTATG
80530738 TATATATT
1 TATATATT
80530746 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATTTTAATATTATG
Found at i:80530741 original size:17 final size:18
Alignment explanation
Indices: 80530702--80530745 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
80530692 TACTACGTTC
*
80530702 TATATATTTTTATATTATG
1 TATATA-TTTTAAATTATG
80530721 TATATATTTTAAATTAT-
1 TATATATTTTAAATTATG
80530738 TATATATT
1 TATATATT
80530746 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 10 0.42
19 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATATATTTTAAATTATG
Found at i:80530873 original size:16 final size:15
Alignment explanation
Indices: 80530841--80530885 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
80530831 ATTTCTAATA
80530841 TATGTATA-TATTA-
1 TATGTATATTATTAT
*
80530854 TATGTATTTTATATAT
1 TATGTATATTAT-TAT
80530870 TATGTATATTATTAT
1 TATGTATATTATTAT
80530885 T
1 T
80530886 TTTATCATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.26
14 3 0.11
15 6 0.22
16 11 0.41
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATGTATATTATTAT
Found at i:80530879 original size:18 final size:19
Alignment explanation
Indices: 80530845--80530884 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
80530835 CTAATATATG
*
80530845 TATATATTATATGTATT-T
1 TATATATTATATATATTAT
*
80530863 TATATATTATGTATATTAT
1 TATATATTATATATATTAT
80530882 TAT
1 TAT
80530885 TTTTATCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TATATATTATATATATTAT
Found at i:80534320 original size:29 final size:29
Alignment explanation
Indices: 80534278--80534338 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
80534268 CTCTGCAAGA
80534278 AGAAAACTACCAGTTGAAAATCGACGTTC
1 AGAAAACTACCAGTTGAAAATCGACGTTC
80534307 AGAAAACTACCAGTTGAAAATCGACGTTC
1 AGAAAACTACCAGTTGAAAATCGACGTTC
80534336 AGA
1 AGA
80534339 TTGAAAGGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.20
Consensus pattern (29 bp):
AGAAAACTACCAGTTGAAAATCGACGTTC
Found at i:80542587 original size:41 final size:45
Alignment explanation
Indices: 80542529--80542634 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 45
80542519 ATTATGCTTG
* *
80542529 AAAAAA-ATTAAGATGAAAACCCGAAAAAGG-G-CATCA-TAA-A
1 AAAAAAGATCAAGGTGAAAACCCGAAAAAGGTGTCATCATTAACA
* * * *
80542569 AAAAAAGATCAATGTGAAAACCCGAAAAGGGTGTCTTGATTAACA
1 AAAAAAGATCAAGGTGAAAACCCGAAAAAGGTGTCATCATTAACA
80542614 AAAAAAGATCAAGGTGAAAAC
1 AAAAAAGATCAAGGTGAAAAC
80542635 TGTAACACCC
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
40 6 0.11
41 20 0.37
42 1 0.02
43 3 0.06
44 3 0.06
45 21 0.39
ACGTcount: A:0.55, C:0.12, G:0.18, T:0.15
Consensus pattern (45 bp):
AAAAAAGATCAAGGTGAAAACCCGAAAAAGGTGTCATCATTAACA
Found at i:80546296 original size:41 final size:42
Alignment explanation
Indices: 80546239--80546325 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
80546229 GAAGGCGATC
80546239 CCTTTTCTCTTTATGACAC-TTTTTTTACTATCATTGATTAA
1 CCTTTTCTCTTTATGACACTTTTTTTTACTATCATTGATTAA
80546280 CCTTTTCTCTTTATGACACTTTTTTTTACTATCATTGATTAA
1 CCTTTTCTCTTTATGACACTTTTTTTTACTATCATTGATTAA
80546322 CCTT
1 CCTT
80546326 CTTTGTTTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 19 0.42
42 26 0.58
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.54
Consensus pattern (42 bp):
CCTTTTCTCTTTATGACACTTTTTTTTACTATCATTGATTAA
Found at i:80547040 original size:88 final size:88
Alignment explanation
Indices: 80546860--80547072 Score: 272
Period size: 88 Copynumber: 2.4 Consensus size: 88
80546850 TTTTTTTTTT
* * * * *
80546860 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGATGTATTTTCAAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAAGAATTTTCAAAATT
*
80546925 TGTTTTTCAAATTCCTGTTTGTC
66 TGCTTTTCAAATTCCTGTTTGTC
* **
80546948 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACACTGAAGAATTTTC-ATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAAGAATTTTCAAAATT
80547012 TGCTTTTC-AA-TCTCTGCTTT-TC
66 TGCTTTTCAAATTC-CTG-TTTGTC
*
80547034 AAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
80547073 TGGCTCACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
85 2 0.02
86 7 0.06
87 13 0.12
88 88 0.80
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAAGAATTTTCAAAATT
TGCTTTTCAAATTCCTGTTTGTC
Found at i:80547172 original size:78 final size:79
Alignment explanation
Indices: 80547028--80547175 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 79
80547018 TCAATCTCTG
* * * * *
80547028 CTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTTGGCTCACATGCTGAGGTAT
1 CTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGATGAGCCTCGGCTCACATGCTGAGATAT
80547093 TTTCAGTTTTTATA
66 TTTCAGTTTTTATA
* * *
80547107 CTTTTC-AAAAAATCAACTTATATGGCGAGAGGTGAGATGAGCCTCGGGTCATATGGC-GAGATA
1 CTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGATGAGCCTCGGCTCACAT-GCTGAGATA
80547170 TTTTCA
65 TTTTCA
80547176 AATTCTGTTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
78 52 0.87
79 8 0.13
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (79 bp):
CTTTTCAAAAAAATCAACTCATATGGCGAGAGGTGAGATGAGCCTCGGCTCACATGCTGAGATAT
TTTCAGTTTTTATA
Found at i:80547208 original size:13 final size:13
Alignment explanation
Indices: 80547170--80547208 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
80547160 TGGCGAGATA
80547170 TTTTCAAATTCTG
1 TTTTCAAATTCTG
80547183 TTGTTCAAATTCTG
1 TT-TTCAAATTCTG
*
80547197 TTTTCAATTTCT
1 TTTTCAAATTCT
80547209 ACTTTTCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTTCAAATTCTG
Found at i:80547237 original size:102 final size:104
Alignment explanation
Indices: 80547105--80547306 Score: 257
Period size: 102 Copynumber: 2.0 Consensus size: 104
80547095 TCAGTTTTTA
* * * *
80547105 TACTTTTCAAAAAATCAACTTATATGGCGAGAGGTGAGATGAGCCTCGGGTCATATGGC-GAGAT
1 TACTTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGATGAGCCTCGGCTCACA-CGCTGAGAT
*
80547169 ATTTTCAAATTCTGTTGTTCAAATTCT-GTTTTCAATTTC
65 ATTTTCAAATTCTGTTGTTCAAATTCTACTTTTCAATTTC
* * * * *
80547208 TACTTTTC-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTA
1 TACTTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGATGAGCCTCGGCTCACACGCTGAGATA
* * *
80547272 TTTTCAATTTCTGTTTTTCAATTTCTACTTTTCAA
66 TTTTCAAATTCTGTTGTTCAAATTCTACTTTTCAA
80547307 AAAAAGTCAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
101 2 0.02
102 67 0.80
103 15 0.18
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (104 bp):
TACTTTTCAAAAAATCAACTCATATGGCGAGAGGTGAGATGAGCCTCGGCTCACACGCTGAGATA
TTTTCAAATTCTGTTGTTCAAATTCTACTTTTCAATTTC
Found at i:80547303 original size:14 final size:14
Alignment explanation
Indices: 80547272--80547306 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
80547262 CGCTGAGGTA
**
80547272 TTTTCAATTTCTGT
1 TTTTCAATTTCTAC
80547286 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
80547300 TTTTCAA
1 TTTTCAA
80547307 AAAAAGTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:80547384 original size:90 final size:89
Alignment explanation
Indices: 80547190--80547647 Score: 339
Period size: 90 Copynumber: 5.2 Consensus size: 89
80547180 CTGTTGTTCA
*
80547190 AATT-CTG-TTTTCAATTTCTACTTTTC--CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
80547251 CTTGGCTCACACGCTGAGGTATTTTC
66 CTAGG--CACACGCTGAGGTATTTTC
* *
80547277 AATTTCTGTTTTTCAATTTCTACTTTTCAAAAAAAGTCAACTCATATTGCGAGAGGTGACTTGAG
1 AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
*
80547342 CCTCAGG-GCACGCTGAGGTATTTTC
65 CCT-AGGCACACGCTGAGGTATTTTC
* * *
80547367 AGTTCCTGTTTTTCAATTTATATTTTTCAAAAAATAAAAAAATCAACTCATATTGCGAGAGGTGA
1 AATTCCTGTTTTTCAATTTCTACTTTTC-------AAAAAAATCAACTCATATTGCGAGAGGTGA
* * *
80547432 GTTGAGCCCCGAGTCACATG-TCGAGGTATTTTC
59 GTTGAG--CCTAGGCACACGCT-GAGGTATTTTC
* * * *
80547465 AAAAT-CTGCTTTT-AA-----A--TTTCAAAAAGGAT-AACTCATATGGCGAGAGGTGAGTTGA
1 -AATTCCTGTTTTTCAATTTCTACTTTTCAAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
* * * *
80547520 GCCTTGGCTCATGTACTGAGCTATTTTC
64 GCCTAGGCACACG--CTGAGGTATTTTC
* * *** *
80547548 AATTTCTG-TTTT-AATGTCTA-TTTT--TTTAAATCAACTCATATTGCGAGAGGTGAGTTTAGC
1 AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
80547608 CTCAGG-ACACGCTGAGGTATTTTA
66 CT-AGGCACACGCTGAGGTATTTTC
* *
80547632 AATTTCTGTTTGTCAA
1 AATTCCTGTTTTTCAA
80547648 AAATTAACTC
Statistics
Matches: 302, Mismatches: 36, Indels: 67
0.75 0.09 0.17
Matches are distributed among these distances:
81 8 0.03
82 9 0.03
83 44 0.15
84 22 0.07
85 5 0.02
86 34 0.11
87 7 0.02
88 6 0.02
89 19 0.06
90 45 0.15
91 4 0.01
92 32 0.11
93 2 0.01
96 28 0.09
97 12 0.04
98 23 0.08
99 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (89 bp):
AATTCCTGTTTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTAGGCACACGCTGAGGTATTTTC
Found at i:80547609 original size:86 final size:83
Alignment explanation
Indices: 80547405--80547767 Score: 258
Period size: 83 Copynumber: 4.4 Consensus size: 83
80547395 AAAAAATAAA
** * * **
80547405 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCGAGTCACATGTC-GAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-G-CTCATGTCTGAGCTATTTTCAATT
* *
80547469 TCTGCTTTTAAATTTC-A---A
64 TCTG-TTTT-AATGTCTATTTT
*
80547487 AAAGGAT-AACTCATATGGCGAGAGGTGAGTTGAGCCTTGGCTCATGTACTGAGCTATTTTCAAT
1 AAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGT-CTGAGCTATTTTCAAT
80547551 TTCTGTTTTAATGTCTATTTTTT
63 TTCTGTTTTAATGTCTA--TTTT
* * * * * * *
80547574 TAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGG-ACACG-CTGAGGTATTTTAAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCATGTCTGAGCTATTTTCAATTT
80547637 CTG--TT--TGTC-A----
65 CTGTTTTAATGTCTATTTT
* *
80547647 AAAATTAACTCATATTGCGATGA-GTGAGTTGAGCCTTGGCTCATGTGTTGAGCTATTTTCAATT
1 AAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTTGGCTCATGT-CTGAGCTATTTTCAATT
* *
80547711 TCTATTTTTAATGTCTGTTTT
64 TCT-GTTTTAATGTCTATTTT
* **
80547732 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-A-TCAACTCATATTGCGAGAGGTGAGTTGAGC
80547768 TCAAGATCAC
Statistics
Matches: 221, Mismatches: 31, Indels: 53
0.72 0.10 0.17
Matches are distributed among these distances:
72 2 0.01
73 33 0.15
74 2 0.01
75 17 0.08
78 2 0.01
79 1 0.00
80 8 0.04
81 11 0.05
82 12 0.05
83 45 0.20
84 21 0.10
85 5 0.02
86 34 0.15
87 28 0.13
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (83 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCATGTCTGAGCTATTTTCAATTTC
TGTTTTAATGTCTATTTT
Found at i:80557760 original size:15 final size:15
Alignment explanation
Indices: 80557736--80557769 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
80557726 AAGATAAAAT
* *
80557736 TTTAATTTTTTATAG
1 TTTAAATTTTTATAA
80557751 TTTAAATTTTTATAA
1 TTTAAATTTTTATAA
80557766 TTTA
1 TTTA
80557770 TAAAAGATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (15 bp):
TTTAAATTTTTATAA
Found at i:80557822 original size:30 final size:30
Alignment explanation
Indices: 80557753--80557821 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
80557743 TTTTATAGTT
* *
80557753 TAAATTTTTATAATTTATAAAAGATTAAAT
1 TAAATTTTTATAATTTATAAAAGACTAAAA
*
80557783 TAAATTTTTATAATTT-TAAGAGGACTAAAA
1 TAAATTTTTATAATTTATAA-AAGACTAAAA
80557813 TATAATTTT
1 TA-AATTTT
80557822 ACTTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 3 0.09
30 25 0.74
31 6 0.18
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.46
Consensus pattern (30 bp):
TAAATTTTTATAATTTATAAAAGACTAAAA
Found at i:80559577 original size:18 final size:17
Alignment explanation
Indices: 80559550--80559595 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
80559540 AGTTTAGGGG
80559550 GGGGAA-TAAAAAGTTTT
1 GGGGAAGTAAAAA-TTTT
80559567 GGGGAAGT-AAAATTTT
1 GGGGAAGTAAAAATTTT
80559583 GAGGGAAAGTAAA
1 G-GGG-AAGTAAA
80559596 TAGGGGGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.20
17 13 0.52
18 5 0.20
19 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (17 bp):
GGGGAAGTAAAAATTTT
Found at i:80559588 original size:17 final size:18
Alignment explanation
Indices: 80559558--80559595 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
80559548 GGGGGGAATA
80559558 AAAAGTTTTGGGG-AAGT
1 AAAAGTTTTGGGGAAAGT
80559575 AAAA-TTTTGAGGGAAAGT
1 AAAAGTTTTG-GGGAAAGT
80559593 AAA
1 AAA
80559596 TAGGGGGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 7 0.37
18 7 0.37
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (18 bp):
AAAAGTTTTGGGGAAAGT
Found at i:80561091 original size:14 final size:14
Alignment explanation
Indices: 80561072--80561104 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80561062 TGATGGAGGC
80561072 TGTAATTTT-TAATG
1 TGTAATTTTGT-ATG
80561086 TGTAATTTTGTATG
1 TGTAATTTTGTATG
80561100 TGTAA
1 TGTAA
80561105 CCTTAATAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (14 bp):
TGTAATTTTGTATG
Found at i:80567740 original size:17 final size:18
Alignment explanation
Indices: 80567708--80567742 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
80567698 ACTTTGAAAT
80567708 CAAGTTTAATTTCAAAAA
1 CAAGTTTAATTTCAAAAA
*
80567726 CAAGTTTTA-TTCAAAAA
1 CAAGTTTAATTTCAAAAA
80567743 TGTTATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (18 bp):
CAAGTTTAATTTCAAAAA
Found at i:80569415 original size:13 final size:14
Alignment explanation
Indices: 80569391--80569419 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80569381 TCTTTCCTTC
80569391 TTTTATTGTTATTT
1 TTTTATTGTTATTT
80569405 TTTTATT-TTATTT
1 TTTTATTGTTATTT
80569418 TT
1 TT
80569420 GCTGCTTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (14 bp):
TTTTATTGTTATTT
Found at i:80572642 original size:27 final size:27
Alignment explanation
Indices: 80572584--80572645 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
80572574 AATTTTAAAG
*
80572584 AAAATATATAAAAATTATATAATTTAT
1 AAAATATAAAAAAATTATATAATTTAT
*
80572611 TAAATATAAAATAAATTATA-AA-TTAT
1 AAAATATAAAA-AAATTATATAATTTAT
80572637 AAAAATATA
1 -AAAATATA
80572646 TGTATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.13
27 18 0.60
28 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
AAAATATAAAAAAATTATATAATTTAT
Found at i:80574263 original size:6 final size:6
Alignment explanation
Indices: 80574252--80574281 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
80574242 ACCAAATGAA
80574252 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG
1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG
80574282 AGGGTTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.83, T:0.00
Consensus pattern (6 bp):
GGGAGG
Found at i:80577570 original size:18 final size:18
Alignment explanation
Indices: 80577547--80577612 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
80577537 AAAATGTGAG
* *
80577547 AAATGATGTTCGCATTTT
1 AAATGATGTTCACATTTC
80577565 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
80577583 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
80577601 AAATGATGTTCA
1 AAATGATGTTCA
80577613 AATTGATGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:80578136 original size:72 final size:71
Alignment explanation
Indices: 80578036--80578207 Score: 229
Period size: 72 Copynumber: 2.4 Consensus size: 71
80578026 AACAAAAATC
* * * *
80578036 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
80578101 TCTAT-
66 TCTATA
* * * *
80578106 GTGTAATATACTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGTTATTGAATTTATGTTCTACT
1 CT-AAAT-TACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
*
80578171 TATTTATA
64 TATCTATA
*
80578179 CTAAATTAGTTTTATCAATAGTTGTTTAT
1 CTAAATTACTTTTATCAATAGTTGTTTAT
80578208 ATATGATTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
70 1 0.01
71 23 0.27
72 61 0.71
73 1 0.01
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (71 bp):
CTAAATTACTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
TCTATA
Found at i:80581562 original size:96 final size:96
Alignment explanation
Indices: 80581434--80581619 Score: 239
Period size: 96 Copynumber: 1.9 Consensus size: 96
80581424 AAAATGCTTC
* * *** * * * *
80581434 TTGCATGGGGCGTTTTCATCTGACATGACAGTGAAAATGTTTCTTATAGGATGTATTTTCAAGGC
1 TTGCATAGGGCATTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC
*
80581499 -TCATGTTTGACATGTCATAGGAAAACACTCA
66 AT-ATGTTTGACATGTCAGAGGAAAACACTCA
* * *
80581530 TTGCATAGGGCATTTTCATTTGACATGGCAGTGAAAACACTTCCTACAGGATGCGTTTTCAAGCC
1 TTGCATAGGGCATTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC
80581595 ATATGTTTGACATGTCAGAGGAAAA
66 ATATGTTTGACATGTCAGAGGAAAA
80581620 TGCCCCTTGT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
96 75 0.99
97 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (96 bp):
TTGCATAGGGCATTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC
ATATGTTTGACATGTCAGAGGAAAACACTCA
Found at i:80581642 original size:96 final size:95
Alignment explanation
Indices: 80581441--80581662 Score: 218
Period size: 96 Copynumber: 2.3 Consensus size: 95
80581431 TTCTTGCATG
*** * * * *
80581441 GGGCGTTTTCATCTGACATGACAGTGAAAATGTTTCTTATAGGATGTATTTTCAAGGCTCATGTT
1 GGGCGTTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCCTCATGTT
* *
80581506 TGACATGTCATAGGAAAACACTCATTGCATA
66 TGACATGTCAGAGGAAAACACCCATTG-ATA
* * * *
80581537 GGGCATTTTCATTTGACATGGCAGTGAAAACACTTCCTACAGGATGCGTTTTCAAGCCAT-ATGT
1 GGGCGTTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCC-TCATGT
** *
80581601 TTGACATGTCAGAGGAAAATGCCCCTTG-TA
65 TTGACATGTCAGAGGAAAACACCCATTGATA
*
80581631 GGAAGCGTTTTCA-CTGCCATG-CAGATGAAAAC
1 GG--GCGTTTTCATCTGACATGACAG-TGAAAAC
80581663 GCCCCCTGCA
Statistics
Matches: 103, Mismatches: 19, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
94 7 0.07
95 13 0.13
96 82 0.80
97 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (95 bp):
GGGCGTTTTCATCTGACATGACAGTGAAAACACTTCCTACAGGATGCATTTTCAAGCCTCATGTT
TGACATGTCAGAGGAAAACACCCATTGATA
Found at i:80582879 original size:18 final size:18
Alignment explanation
Indices: 80582856--80582890 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
80582846 TTTTTAAATG
80582856 GTGTTAGATAAAA-AAAAC
1 GTGTTAGA-AAAAGAAAAC
80582874 GTGTTAGAAAAAGAAAA
1 GTGTTAGAAAAAGAAAA
80582891 AAATCAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (18 bp):
GTGTTAGAAAAAGAAAAC
Found at i:80588605 original size:12 final size:12
Alignment explanation
Indices: 80588588--80588612 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80588578 AGCCTGAAGC
80588588 ATTTGAAGAATG
1 ATTTGAAGAATG
80588600 ATTTGAAGAATG
1 ATTTGAAGAATG
80588612 A
1 A
80588613 GGCAGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (12 bp):
ATTTGAAGAATG
Found at i:80591806 original size:9 final size:9
Alignment explanation
Indices: 80591792--80591819 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
80591782 CACGTTCACC
80591792 GGGTAAAAA
1 GGGTAAAAA
80591801 GGGTAAAAA
1 GGGTAAAAA
80591810 GGGTAAAAA
1 GGGTAAAAA
80591819 G
1 G
80591820 AAGAGTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.36, T:0.11
Consensus pattern (9 bp):
GGGTAAAAA
Found at i:80592278 original size:15 final size:16
Alignment explanation
Indices: 80592260--80592303 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
80592250 TCCTGGGAGA
*
80592260 CCAGCTCCTCCTCCT-
1 CCAGCACCTCCTCCTG
*
80592275 CCAGCACCACCTCCTG
1 CCAGCACCTCCTCCTG
80592291 CC-GCACCTCCTCC
1 CCAGCACCTCCTCC
80592304 CAAAGCAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.11, C:0.61, G:0.09, T:0.18
Consensus pattern (16 bp):
CCAGCACCTCCTCCTG
Found at i:80595193 original size:17 final size:17
Alignment explanation
Indices: 80595171--80595204 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
80595161 ATCCACTAAT
*
80595171 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
80595188 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
80595205 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:80599832 original size:17 final size:17
Alignment explanation
Indices: 80599810--80599843 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
80599800 ATCCACTAAT
*
80599810 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
80599827 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
80599844 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:80601753 original size:28 final size:28
Alignment explanation
Indices: 80601713--80601772 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
80601703 GTCATTATCA
80601713 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
80601741 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
80601769 ACCC
1 ACCC
80601773 ATTAATATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:80606157 original size:32 final size:32
Alignment explanation
Indices: 80606120--80606181 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
80606110 GGTTGTAAGA
80606120 TCACTTGATCCAAGTAAAGACCCTTTCCGTTC
1 TCACTTGATCCAAGTAAAGACCCTTTCCGTTC
80606152 TCACTTGATCCAAGTAAAGACCCTTTCCGT
1 TCACTTGATCCAAGTAAAGACCCTTTCCGT
80606182 CCTCGGGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (32 bp):
TCACTTGATCCAAGTAAAGACCCTTTCCGTTC
Found at i:80607204 original size:28 final size:28
Alignment explanation
Indices: 80607164--80607223 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
80607154 GTCATTATCA
80607164 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
80607192 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
80607220 ACCC
1 ACCC
80607224 TATTAATATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:80608574 original size:16 final size:16
Alignment explanation
Indices: 80608542--80608575 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80608532 CCACCCCATG
**
80608542 CCGTCTGCCACGTCCA
1 CCGTCTGCCACCACCA
80608558 CCGTCTGCCACCACCA
1 CCGTCTGCCACCACCA
80608574 CC
1 CC
80608576 TGCTCCACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.56, G:0.15, T:0.15
Consensus pattern (16 bp):
CCGTCTGCCACCACCA
Found at i:80609567 original size:3 final size:3
Alignment explanation
Indices: 80609559--80609636 Score: 68
Period size: 3 Copynumber: 24.7 Consensus size: 3
80609549 CCATTATTTA
* * *
80609559 TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT TAG TA- TAT GTTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
*
80609604 TAT TAT GTAT ATATT TAT GTAG TAT TAT TAT TA
1 TAT TAT -TAT -TA-T TAT -TAT TAT TAT TAT TA
80609637 GTCGTTTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
2 2 0.03
3 48 0.77
4 11 0.18
5 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:80609569 original size:15 final size:15
Alignment explanation
Indices: 80609527--80609635 Score: 55
Period size: 15 Copynumber: 6.9 Consensus size: 15
80609517 TATTTTTTAA
80609527 ATATTACTTATTATTGT
1 ATATTA-TTATTATT-T
**
80609544 AT-TTACCATTATTT
1 ATATTATTATTATTT
80609558 ATATTATTATTA-TT
1 ATATTATTATTATTT
*
80609572 ATTATTAATATTA-TT
1 A-TATTATTATTATTT
*
80609587 ATTATTAGTA-TATGTT
1 A-TATTATTATTAT-TT
*
80609603 TTATTATGTATATATTT
1 ATATTAT-TAT-TATTT
*
80609620 ATGTAGTATTATTATT
1 A--TATTATTATTATT
80609636 AGTCGTTTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
14 8 0.11
15 39 0.53
16 7 0.10
17 8 0.11
18 6 0.08
19 5 0.07
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.60
Consensus pattern (15 bp):
ATATTATTATTATTT
Found at i:80609736 original size:14 final size:15
Alignment explanation
Indices: 80609713--80609748 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
80609703 ATATGTTATG
80609713 TATA-TATATTTTTA
1 TATATTATATTTTTA
80609727 -ATATTATATTTTTA
1 TATATTATATTTTTA
80609741 TATATTAT
1 TATATTAT
80609749 TATGTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.15
14 10 0.50
15 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATATTATATTTTTA
Found at i:80609742 original size:24 final size:24
Alignment explanation
Indices: 80609556--80609746 Score: 72
Period size: 24 Copynumber: 7.7 Consensus size: 24
80609546 TTACCATTAT
* *
80609556 TTATATTATTATTATTATTATTAATA
1 TTATATTTTTA-TA-TATTTTTAATA
* *
80609582 TTATTATTATTAGTATATGTTTTATTA
1 TTA-TATTTTTA-TATAT-TTTTAATA
* * * * *
80609609 TGTATATATTTATGTAGTATTATTA
1 T-TATATTTTTATATATTTTTAATA
*
80609634 TTAGTCGTTTTT-T-TATTTTTAATA
1 TTA-T-ATTTTTATATATTTTTAATA
* *
80609658 TGTATATATTGTA-A-ATATTTAATA
1 T-TATAT-TTTTATATATTTTTAATA
* *
80609682 CTATA--TATATATATTTTTCATATA
1 TTATATTTTTATATATTTTT-A-ATA
* *
80609706 TGT-TATGTATATATATTTTTAATA
1 T-TATATTTTTATATATTTTTAATA
80609730 TTATATTTTTATATATT
1 TTATATTTTTATATATT
80609747 ATTATGTATA
Statistics
Matches: 126, Mismatches: 22, Indels: 36
0.68 0.12 0.20
Matches are distributed among these distances:
20 3 0.02
21 1 0.01
22 5 0.04
23 7 0.06
24 45 0.36
25 14 0.11
26 26 0.21
27 23 0.18
28 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.60
Consensus pattern (24 bp):
TTATATTTTTATATATTTTTAATA
Found at i:80609742 original size:26 final size:26
Alignment explanation
Indices: 80609687--80609745 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
80609677 TAATACTATA
* *
80609687 TATATATATTTTTCATATATGTTATG
1 TATATATATTTTTAATATATATTATG
*
80609713 TATATATATTTTTAATATTATATT-TT
1 TATATATATTTTTAATA-TATATTATG
80609739 TATATAT
1 TATATAT
80609746 TATTATGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (26 bp):
TATATATATTTTTAATATATATTATG
Found at i:80609772 original size:40 final size:40
Alignment explanation
Indices: 80609647--80609772 Score: 105
Period size: 40 Copynumber: 3.0 Consensus size: 40
80609637 GTCGTTTTTT
* *
80609647 TATTTTTA-ATATGTATATATTGTAAATATTTAATACTATATATATA
1 TATTTTTATATAT-TAT-TA-TGTATATATTT--TAATAT-TAT-TA
* * *
80609693 TATTTTTCATATA-TGTTATGTATATATATTT-TTAATATTA
1 TATTTTT-ATATATTATTATGTATATAT-TTTAATATTATTA
80609733 TATTTTTATATATTATTATGTATATATTTTAATATTATTA
1 TATTTTTATATATTATTATGTATATATTTTAATATTATTA
80609773 GTTATATATC
Statistics
Matches: 68, Mismatches: 7, Indels: 16
0.75 0.08 0.18
Matches are distributed among these distances:
39 8 0.12
40 29 0.43
41 3 0.04
42 2 0.03
43 1 0.01
44 8 0.12
45 4 0.06
46 9 0.13
47 1 0.01
48 3 0.04
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (40 bp):
TATTTTTATATATTATTATGTATATATTTTAATATTATTA
Found at i:80609794 original size:26 final size:24
Alignment explanation
Indices: 80609731--80609794 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 24
80609721 TTTTTAATAT
80609731 TATATTTTTATATATTATTATGTA
1 TATATTTTTATATATTATTATGTA
80609755 TATA-TTTTA-ATATTATTA-GTTA
1 TATATTTTTATATATTATTATG-TA
80609777 TATATCTTTTATACTATT
1 TATAT-TTTTATA-TATT
80609795 GTATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.03
22 15 0.43
23 5 0.14
24 9 0.26
25 1 0.03
26 4 0.11
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (24 bp):
TATATTTTTATATATTATTATGTA
Found at i:80609819 original size:25 final size:23
Alignment explanation
Indices: 80609731--80609825 Score: 83
Period size: 23 Copynumber: 4.1 Consensus size: 23
80609721 TTTTTAATAT
* *
80609731 TATAT-TTTTATATA-TTATTATG
1 TATATATTTTA-ATACTTATTGTA
80609753 TATATATTTTAATA-TTATTAGT-
1 TATATATTTTAATACTTATT-GTA
*
80609775 TATATATCTTTTATAC-TATTGTA
1 TATATAT-TTTAATACTTATTGTA
80609798 TATATATTTCTAATACTATATTGTA
1 TATATATTT-TAATACT-TATTGTA
80609823 TAT
1 TAT
80609826 TTCTAACACC
Statistics
Matches: 62, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
22 24 0.39
23 28 0.45
25 10 0.16
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (23 bp):
TATATATTTTAATACTTATTGTA
Found at i:80609939 original size:18 final size:18
Alignment explanation
Indices: 80609916--80610071 Score: 69
Period size: 18 Copynumber: 8.6 Consensus size: 18
80609906 CTAACATATG
80609916 TATATATTATATATATTT
1 TATATATTATATATATTT
* *
80609934 TATATATTATGTATATAT
1 TATATATTATATATATTT
*
80609952 TAT-TA-TATCTAT-TTT
1 TATATATTATATATATTT
* *
80609967 TATCCCTATTATATTTATTAT
1 TAT--ATATTATATATATT-T
80609988 TA-ATATTAGTAAATATATTT
1 TATATATTA-T--ATATATTT
*
80610008 TATTATATGGGTATATATACTT
1 TA-TATAT---TATATATATTT
* *
80610030 TACATAGTAT-TAT-TTT
1 TATATATTATATATATTT
* *
80610046 CATATATCAT-TATA-TT
1 TATATATTATATATATTT
80610062 TAT-TATTATA
1 TATATATTATA
80610072 CCTATTATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 34
0.67 0.12 0.22
Matches are distributed among these distances:
15 10 0.10
16 21 0.20
17 5 0.05
18 29 0.28
19 6 0.06
20 5 0.05
21 12 0.12
22 13 0.12
24 1 0.01
25 2 0.02
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:80610102 original size:37 final size:36
Alignment explanation
Indices: 80610037--80610106 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
80610027 CTTTACATAG
80610037 TATTATTTTCATATATCATTATATTTATTATTATACC
1 TATTATTTTCATATATCATTATATTTATT-TTATACC
*
80610074 TATTATTTTCACTATTGTCATT-TA-TTATTTTAT
1 TATTATTTTCA-TA-TATCATTATATTTATTTTAT
80610107 TTTAATATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
36 4 0.13
37 16 0.53
38 4 0.13
39 6 0.20
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.60
Consensus pattern (36 bp):
TATTATTTTCATATATCATTATATTTATTTTATACC
Found at i:80611610 original size:67 final size:66
Alignment explanation
Indices: 80611533--80611658 Score: 193
Period size: 67 Copynumber: 1.9 Consensus size: 66
80611523 TTAAGTTTTT
*
80611533 AAATTTTTTAATTAATAACTCTTTTATTTATAT-AATAAA-AATATATTATATATATTATTGTCT
1 AAATTTTTTAATTAATAACTCCTTTATTTATATAAATAAATAATA-ATTATATA-ATTATTGTCT
80611596 TAA
64 TAA
80611599 AAATATTTTTAATTAATAACTCCTTTATTTATATAAATAAATTAATAATTATATAATTAT
1 AAAT-TTTTTAATTAATAACTCCTTTATTTATATAAATAAA-TAATAATTATATAATTAT
80611659 ATAATAAAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
66 4 0.07
67 28 0.51
68 11 0.20
69 8 0.15
70 4 0.07
ACGTcount: A:0.44, C:0.05, G:0.01, T:0.50
Consensus pattern (66 bp):
AAATTTTTTAATTAATAACTCCTTTATTTATATAAATAAATAATAATTATATAATTATTGTCTTA
A
Found at i:80611667 original size:67 final size:67
Alignment explanation
Indices: 80611533--80611678 Score: 183
Period size: 67 Copynumber: 2.2 Consensus size: 67
80611523 TTAAGTTTTT
* * **
80611533 AAAT-TTTTTAATTAATAACTCTTTTATTTATATAATAAAAATATATTATATATATTATTGTCTT
1 AAATATTTTTAATTAATAACTCCTTTATTTATATAATAAAAATATATTATATATATTATTATAAT
80611597 AA
66 AA
80611599 AAATATTTTTAATTAATAACTCCTTTATTTATATAAATAAATTAATA-ATTATATA-ATTA-TAT
1 AAATATTTTTAATTAATAACTCCTTTATTTATAT-AATAAA--AATATATTATATATATTATTAT
80611661 AATAA
63 AATAA
80611666 AATATATATTTTA
1 AA-ATAT-TTTTA
80611679 TATATTTATC
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
66 4 0.06
67 35 0.50
68 14 0.20
69 13 0.19
70 4 0.06
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (67 bp):
AAATATTTTTAATTAATAACTCCTTTATTTATATAATAAAAATATATTATATATATTATTATAAT
AA
Found at i:80612708 original size:16 final size:15
Alignment explanation
Indices: 80612676--80612718 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
80612666 TTTTAATGTT
80612676 TATAATGTTTTTGATA
1 TATAAT-TTTTTGATA
*
80612692 TATTAATTTTTTTATA
1 TA-TAATTTTTTGATA
*
80612708 TAAAATTTTTT
1 TATAATTTTTT
80612719 AATACGGCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.33
16 12 0.50
17 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (15 bp):
TATAATTTTTTGATA
Done.