Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 246 of 320
Found at i:80612997 original size:18 final size:18
Alignment explanation
Indices: 80612974--80613009 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
80612964 TATAATTGAA
*
80612974 TTTTTTAAGAGATAATTT
1 TTTTTTAAGAGAGAATTT
80612992 TTTTTTAAGAGAGAATTT
1 TTTTTTAAGAGAGAATTT
80613010 ATAAACCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (18 bp):
TTTTTTAAGAGAGAATTT
Found at i:80614196 original size:11 final size:11
Alignment explanation
Indices: 80614182--80614206 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80614172 ATAAAAATAT
80614182 AAAAAGCAAAA
1 AAAAAGCAAAA
80614193 AAAAAGCAAAA
1 AAAAAGCAAAA
80614204 AAA
1 AAA
80614207 TTAGAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGCAAAA
Found at i:80614310 original size:16 final size:16
Alignment explanation
Indices: 80614291--80614326 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
80614281 CTTTTCCCCC
80614291 CTCTCCTTCCTCCCTT
1 CTCTCCTTCCTCCCTT
* *
80614307 CTCTCTTTTCTCCCTT
1 CTCTCCTTCCTCCCTT
80614323 CTCT
1 CTCT
80614327 TTCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
CTCTCCTTCCTCCCTT
Found at i:80639718 original size:19 final size:19
Alignment explanation
Indices: 80639681--80639722 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
80639671 TAAAAATAAT
*
80639681 TATAGGAAATCTAAAATTA
1 TATAGCAAATCTAAAATTA
80639700 CTATAGCAAATCT-AAATTA
1 -TATAGCAAATCTAAAATTA
80639719 TATA
1 TATA
80639723 ATTTAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 6 0.29
20 11 0.52
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (19 bp):
TATAGCAAATCTAAAATTA
Found at i:80643276 original size:17 final size:18
Alignment explanation
Indices: 80643243--80643276 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80643233 ATTTATTTTG
80643243 TAAATCAACAATTATAAA
1 TAAATCAACAATTATAAA
*
80643261 TAAATC-ACACTTATAA
1 TAAATCAACAATTATAA
80643277 TATACATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAATCAACAATTATAAA
Found at i:80644810 original size:29 final size:29
Alignment explanation
Indices: 80644773--80644836 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
80644763 AATTATTTTT
80644773 AAAT-GTTAATTTAGTAATATTATGAAAA
1 AAATGGTTAATTTAGTAATATTATGAAAA
80644801 AAATGGTTAATTTAGTAATATTATGAAAA
1 AAATGGTTAATTTAGTAATATTATGAAAA
80644830 AAATGGT
1 AAATGGT
80644837 ATTCTTGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 4 0.11
29 31 0.89
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (29 bp):
AAATGGTTAATTTAGTAATATTATGAAAA
Found at i:80649058 original size:23 final size:23
Alignment explanation
Indices: 80649040--80649093 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
80649030 GGTATACACG
80649040 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* **
80649063 TACATAATAATAATA-ATGGTAA
1 TACATAATAAAAATATATACTAA
80649085 TAC-TAATAA
1 TACATAATAA
80649094 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:80649074 original size:3 final size:3
Alignment explanation
Indices: 80649043--80649113 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
80649033 ATACACGTAC
* * * * *
80649043 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
80649090 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
80649114 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:80649595 original size:11 final size:12
Alignment explanation
Indices: 80649576--80649612 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
80649566 GAAAAAAAAA
80649576 AAGAGAGAGAGGG
1 AAGAGAGA-AGGG
80649589 AAGAGAGAAGGG
1 AAGAGAGAAGGG
80649601 -AGAGAGAAGGG
1 AAGAGAGAAGGG
80649612 A
1 A
80649613 GGGGGAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.48
12 4 0.17
13 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
AAGAGAGAAGGG
Found at i:80651047 original size:132 final size:132
Alignment explanation
Indices: 80650834--80651917 Score: 809
Period size: 132 Copynumber: 8.2 Consensus size: 132
80650824 CAAATACAGG
* * * *
80650834 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGA
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
* * * * *
80650899 TCCACTTACTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCTAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
*
80650964 AT
131 AA
*
80650966 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
80651031 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
80651096 AA
131 AA
80651098 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
80651163 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
80651228 AA
131 AA
* * * * *
80651230 GACAAGATTTGCTTTCTTCGATCCAC-TC-CCTACCAATATAGGG-AGACAGGACCTGTTATCTT
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCC-ACCAATAT-GGGAAGACAAGATCTG-CATCTT
* * * * * * * * * **
80651292 CGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATCAAT
63 CGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAAT
* *
80651354 ATAGGAA
126 ACATGAA
* * * * * * * *** * *
80651361 GATAGGACCTGCTATCCTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTGCG
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCG
* * * * * * * * * *
80651425 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTACCAATAT
65 ATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATAC
*
80651488 AGGAA
128 ATGAA
* * * * * * * *** * *
80651493 GATAGGACCTGCTATCTTCGATCTACTTC-ACGCTAATACATGAAGACAAGATCTGCTTTCTGCG
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCG
* * * * * * * * *
80651557 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATAT
65 ATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATAC
*
80651620 AGGAA
128 ATGAA
* * ** * * *** * *
80651625 GATAGGATCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTGCG
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCG
* * * * * * * * *
80651689 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATAT
65 ATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATAC
*
80651752 AGGAA
128 ATGAA
* * ** * * *** *
80651757 GATAGGATCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
1 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCG
* * * * * * * * *
80651821 ATCTACTTCACCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATAT
65 ATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATAC
*
80651884 AGGAA
128 ATGAA
** * **
80651889 GGTAGGATCTGCTACCTTCGATCTACTTC
1 GACAAGATCTGCTTTCTTCGATCTACTTC
80651918 ACGCCAACAC
Statistics
Matches: 881, Mismatches: 62, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
130 4 0.00
131 92 0.10
132 784 0.89
133 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (132 bp):
GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
AA
Found at i:80651329 original size:264 final size:263
Alignment explanation
Indices: 80650839--80652471 Score: 1771
Period size: 264 Copynumber: 6.2 Consensus size: 263
80650829 ACAGGGACAA
* * **
80650839 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG-TATCTTG-GATCC
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATACAGGAAGACAAGATCTGCTATC-TGCGATCC
* * * * * * * *
80650902 ACTT-ACTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTT-C-ACGCTAATACATG
64 ACTTCGCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTAC-C-AATACAGG
* * * ** *
80650964 ATGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTT
126 AAGACAAGATCTGCTATCTTCGATCTACTTC-CCACCAATACAGGAAGACAAGATCTGCTTTCTT
* * * * * *
80651028 CGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAAT
190 CGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAAT
* * * *
80651091 ACATGAAGACAA
252 ATAGGAAGATAG
* * ** *
80651103 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATACAGGAAGACAAGATCTGCTATCTGCGATCCA
* * * * * * *
80651167 CTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAA
65 CTTCGCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATACAGGAA
* * * * * * *
80651230 GACAAGATTTGCTTTCTTCGATCCAC-TCCCTACCAATATAGGGAGACAGGACCTG-TTATCTTC
128 GACAAGATCTGCTATCTTCGATCTACTTCCC-ACCAATACAGGAAGACAAGATCTGCTT-TCTTC
* * * * *
80651293 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
191 GATCTACTTCACACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAG
80651358 GAAGATAG
256 GAAGATAG
* * * * * *
80651366 GACCTGCTATCCTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTATCTGCGATCCAC
* * * *
80651431 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGAC
* * * * * * *
80651496 AGGACCTGCTATCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTGCGATCT
131 AAGATCTGCTATCTTCGATCTACTTCCCACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCT
* *
80651561 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
196 ACTTC-ACACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
80651626 ATAG
260 ATAG
* * * * *
80651630 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTATCTGCGATCCAC
* * *
80651695 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGAC
* * * * *
80651760 AGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
131 AAGATCTGCTATCTTCGATCTACTTCCCACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCT
*
80651825 ACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
196 ACTTCA-CACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
*
80651890 GTAG
260 ATAG
* * * * * *
80651894 GATCTGCTACCTTCGATCTACTTCACGCCAACACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTATCTGCGATCCAC
* * * * * ** *
80651959 TTCACCACTAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATGTAGGAAGAT
66 TTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGAC
* * * * * *
80652024 AGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
131 AAGATCTGCTATCTTCGATCTACTTCCCACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCT
* * * * *
80652089 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATGTAGGAAG
196 ACTTC-ACACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
80652154 ATAG
260 ATAG
* * * * * *
80652158 GACCTGCTATCTTCGATCTACTTTACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTATCTGCGATCCAC
* * * * ** *
80652223 TTCGCCACCAATATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATGTAGGAAGAT
66 TTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGAC
* * * * * *
80652288 AGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
131 AAGATCTGCTATCTTCGATCTACTTCCCACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCT
* * * * *
80652353 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATGTAGGAAG
196 ACTTC-ACACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
80652418 ATAG
260 ATAG
* * *
80652422 GACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
1 GATCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTG
80652472 TTTTCATGAC
Statistics
Matches: 1244, Mismatches: 106, Indels: 38
0.90 0.08 0.03
Matches are distributed among these distances:
262 26 0.02
263 156 0.13
264 1058 0.85
265 2 0.00
266 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (263 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTATCTGCGATCCAC
TTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGAC
AAGATCTGCTATCTTCGATCTACTTCCCACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCT
ACTTCACACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGA
TAG
Found at i:80651918 original size:132 final size:132
Alignment explanation
Indices: 80651008--80652476 Score: 2065
Period size: 132 Copynumber: 11.1 Consensus size: 132
80650998 ACCAATATGG
* * * * * * * *
80651008 GAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCT
* * * * * * * * * * *
80651071 TCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAA
65 TGGATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC-ACGCCAA
***
80651135 TATGG
128 TACAT
* * * * * * * *
80651140 GAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCT
* * * * * * * ** * * * *
80651203 TCGATCTACTTCAC-GCCAATACATGAAGACAAGATTTGCTTTCTTCGATCCAC-TCCCTACCAA
65 TGGATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAA
* *
80651266 TATAG
128 TACAT
* * * * * * ***
80651271 GGAGACAGGACCTG-TTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCATCT
1 GAAGACAAGATCTGCTT-TCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
* *
80651334 TGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCCTCGATCTACTTCACGCCAATA
65 TGGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATA
80651399 CAT
130 CAT
80651402 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
80651467 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCTAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80651532 AT
131 AT
80651534 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * *
80651599 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80651664 AT
131 AT
80651666 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * *
80651731 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80651796 AT
131 AT
* *
80651798 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * * * *
80651863 CGATCCACTTCCTACCAATATAGGAAGGTAGGATCTGCTACCTTCGATCTACTTCACGCCAACAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80651928 AT
131 AT
* *
80651930 GAAGACAAGATCTGCTTTCTGCGATCTACTTCACCACTAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* *
80651995 GGATCCACTTCCTATCAATGTAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80652060 AT
131 AT
80652062 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * *
80652127 GGATCCACTTCCTATCAATGTAGGAAGATAGGACCTGCTATCTTCGATCTACTTTACGCCAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80652192 AT
131 AT
*
80652194 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGTATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* *
80652259 GGATCCACTTCCTATCAATGTAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80652324 AT
131 AT
80652326 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* *
80652391 GGATCCACTTCCTATCAATGTAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
66 GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
80652456 AT
131 AT
*
80652458 GAAGACAAGATCTGTTTTC
1 GAAGACAAGATCTGCTTTC
80652477 ATGACTTCAA
Statistics
Matches: 1261, Mismatches: 69, Indels: 14
0.94 0.05 0.01
Matches are distributed among these distances:
130 3 0.00
131 95 0.08
132 1163 0.92
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (132 bp):
GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
GGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
AT
Found at i:80659907 original size:23 final size:23
Alignment explanation
Indices: 80659889--80659942 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
80659879 GGTATACACG
80659889 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* **
80659912 TACATAATAATAATA-ATGGTAA
1 TACATAATAAAAATATATACTAA
80659934 TAC-TAATAA
1 TACATAATAA
80659943 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:80659923 original size:3 final size:3
Alignment explanation
Indices: 80659892--80659962 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
80659882 ATACACGTAC
* * * * *
80659892 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
80659939 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
80659963 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:80660438 original size:11 final size:12
Alignment explanation
Indices: 80660422--80660456 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
80660412 AAAGAAAAAA
80660422 AAGAGAG-AGGG
1 AAGAGAGAAGGG
80660433 AAGAGAGAAGGG
1 AAGAGAGAAGGG
80660445 -AGAGAGAAGGG
1 AAGAGAGAAGGG
80660456 A
1 A
80660457 GGGGGAAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
AAGAGAGAAGGG
Found at i:80663487 original size:321 final size:321
Alignment explanation
Indices: 80662905--80663548 Score: 1234
Period size: 321 Copynumber: 2.0 Consensus size: 321
80662895 TCTTCAATCT
*
80662905 CCACTTTCACTTCCTCTTTCTTGAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
1 CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
*
80662970 TCTTTCCAGTCCATTCGGGCGCTCACAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
66 TCTTTCCAGTCCATCCGGGCGCTCACAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
80663035 AGGGAATGGGAAGTCCTTGAAAGGATCCCAAAAGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC
131 AGGGAATGGGAAGTCCTTGAAAGGATCCCAAAAGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC
*
80663100 CCCTACGATTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
196 CCCTACGACTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
*
80663165 AATGCTGATGAAATTGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
261 AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
80663226 CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
1 CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
80663291 TCTTTCCAGTCCATCCGGGCGCTCACAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
66 TCTTTCCAGTCCATCCGGGCGCTCACAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
* *
80663356 AGGGAATGGGAAGTCCTTGAAAGGATCCCAAAGGTCCAGAGAGAAGGGATCCAAGATGCTGCTGC
131 AGGGAATGGGAAGTCCTTGAAAGGATCCCAAAAGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC
80663421 CCCTACGACTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
196 CCCTACGACTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
80663486 AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
261 AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
80663547 CC
1 CC
80663549 CAGTATTTAT
Statistics
Matches: 317, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
321 317 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (321 bp):
CCACTTTCACTTCCTCTTTCTTAAGGCCAGGGAGGTCAGCCTTGAACACATGGGCTTCAGGGGTT
TCTTTCCAGTCCATCCGGGCGCTCACAAAAGCCGAGCTTTCCGCGTTACGAGTTGTGAGTGAAGA
AGGGAATGGGAAGTCCTTGAAAGGATCCCAAAAGTCCAGAGAGAAGGGATCCAAGATGCTGCAGC
CCCTACGACTGCCAAACAAACTTGGGATCATCGCCATATCTTTATTTCTTGATAAAGAGTAGCTG
AATGCTGATGAAATCGCTTGGAATCAACTTCTTTTTTGTTGAGGTAGGAGGCGTAGGCTTG
Found at i:80663922 original size:3 final size:3
Alignment explanation
Indices: 80663914--80663939 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80663904 TAAATGATTG
80663914 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
80663940 TTGATGGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:80665020 original size:36 final size:35
Alignment explanation
Indices: 80664974--80665056 Score: 112
Period size: 35 Copynumber: 2.3 Consensus size: 35
80664964 CTTTAAGAGA
* * *
80664974 AAAGTTGAAAATATCACCAATAATAGGATGACTTTG
1 AAAGTCGAAAACAT-ACCAATAATAGAATGACTTTG
* *
80665010 AAAGTCGAAAACCTACCAATAATAGAATGATTTTG
1 AAAGTCGAAAACATACCAATAATAGAATGACTTTG
80665045 AAAGTCGAAAAC
1 AAAGTCGAAAAC
80665057 CTGAAGCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 31 0.74
36 11 0.26
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (35 bp):
AAAGTCGAAAACATACCAATAATAGAATGACTTTG
Found at i:80665033 original size:35 final size:35
Alignment explanation
Indices: 80664989--80665058 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
80664979 TGAAAATATC
*
80664989 ACCAATAATAGGATGACTTTGAAAGTCGAAAACCT
1 ACCAATAATAGAATGACTTTGAAAGTCGAAAACCT
*
80665024 ACCAATAATAGAATGATTTTGAAAGTCGAAAACCT
1 ACCAATAATAGAATGACTTTGAAAGTCGAAAACCT
80665059 GAAGCTACAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (35 bp):
ACCAATAATAGAATGACTTTGAAAGTCGAAAACCT
Found at i:80674355 original size:16 final size:18
Alignment explanation
Indices: 80674324--80674360 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
80674314 ATTTTCAGTT
*
80674324 TAAAATTTTTATAATTTA
1 TAAAATTTTTATAATTAA
80674342 TAAAA-TTTTA-AATTAA
1 TAAAATTTTTATAATTAA
80674358 TAA
1 TAA
80674361 TGATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATTTTTATAATTAA
Found at i:80674386 original size:29 final size:28
Alignment explanation
Indices: 80674346--80674406 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
80674336 AATTTATAAA
*
80674346 ATTTTAAATTAATAATGATAA-AATTTT
1 ATTTTAAATTAAAAATGATAAGAATTTT
80674373 ATTTTAATATTTAAAAATGATAAGAATTTT
1 ATTTTAA-A-TTAAAAATGATAAGAATTTT
80674403 ATTT
1 ATTT
80674407 AAGAATTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 7 0.23
28 1 0.03
29 12 0.40
30 10 0.33
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (28 bp):
ATTTTAAATTAAAAATGATAAGAATTTT
Found at i:80678340 original size:17 final size:16
Alignment explanation
Indices: 80678306--80678336 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80678296 CCCATTTATT
*
80678306 TTCCCTCAAACTTTTA
1 TTCCCTAAAACTTTTA
80678322 TTCCCTAAAACTTTT
1 TTCCCTAAAACTTTT
80678337 TATTTTTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (16 bp):
TTCCCTAAAACTTTTA
Found at i:80698839 original size:8 final size:8
Alignment explanation
Indices: 80698812--80698880 Score: 104
Period size: 8 Copynumber: 8.6 Consensus size: 8
80698802 TTCATTTCGG
80698812 GAAGA-AA
1 GAAGAGAA
80698819 GAAGGAGAA
1 GAA-GAGAA
*
80698828 GAAGAAAA
1 GAAGAGAA
80698836 GAAGAGAA
1 GAAGAGAA
80698844 GAAGAGAA
1 GAAGAGAA
*
80698852 GAAGAAAA
1 GAAGAGAA
80698860 GAAGAGAA
1 GAAGAGAA
80698868 GAAGAGAA
1 GAAGAGAA
80698876 GAAGA
1 GAAGA
80698881 AGGATGCGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
7 3 0.05
8 48 0.86
9 5 0.09
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (8 bp):
GAAGAGAA
Found at i:80698850 original size:24 final size:24
Alignment explanation
Indices: 80698812--80698881 Score: 124
Period size: 24 Copynumber: 2.9 Consensus size: 24
80698802 TTCATTTCGG
80698812 GAAGA-AAGAAGGAGAAGAAGAAAA
1 GAAGAGAAGAA-GAGAAGAAGAAAA
80698836 GAAGAGAAGAAGAGAAGAAGAAAA
1 GAAGAGAAGAAGAGAAGAAGAAAA
80698860 GAAGAGAAGAAGAGAAGAAGAA
1 GAAGAGAAGAAGAGAAGAAGAA
80698882 GGATGCGACA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
24 40 0.89
25 5 0.11
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (24 bp):
GAAGAGAAGAAGAGAAGAAGAAAA
Found at i:80699583 original size:92 final size:97
Alignment explanation
Indices: 80699401--80699615 Score: 264
Period size: 92 Copynumber: 2.2 Consensus size: 97
80699391 TGGCGGATTT
* *
80699401 TTTACTAAAATAATAT-AAAAATAAAATACGAAAATAATATATTTTAAAAAATAAAATCTGAAAA
1 TTTACTAAATTAATATAAAAAATAAAATACAAAAATAATATATTTT---AAATAAAA-CTGAAAA
80699465 TTTAAAAAATACAAACAAAAGACCAAAATCAGGGTTA
62 -TTAAAAAATACAAACAAAAGACCAAAATCAGGGTTA
*
80699502 TTTACTAAATTAATATAAAAAATAAAATACAAAAATAGTATATTTT-AA-AAAA-T-AAAA-TAA
1 TTTACTAAATTAATATAAAAAATAAAATACAAAAATAATATATTTTAAATAAAACTGAAAATTAA
* * *
80699562 AAAATACCAAC-AAAGTGCCAAAATTAGGGTTA
66 AAAATACAAACAAAAG-ACCAAAATCAGGGTTA
*
80699594 TTTATTAAATTAATATAAAAAA
1 TTTACTAAATTAATATAAAAAA
80699616 ACACTTAAAT
Statistics
Matches: 105, Mismatches: 7, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
91 4 0.04
92 48 0.46
94 4 0.04
95 1 0.01
97 4 0.04
98 2 0.02
101 15 0.14
102 27 0.26
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.28
Consensus pattern (97 bp):
TTTACTAAATTAATATAAAAAATAAAATACAAAAATAATATATTTTAAATAAAACTGAAAATTAA
AAAATACAAACAAAAGACCAAAATCAGGGTTA
Found at i:80699792 original size:149 final size:149
Alignment explanation
Indices: 80699499--80699888 Score: 546
Period size: 149 Copynumber: 2.6 Consensus size: 149
80699489 AAAATCAGGG
* *
80699499 TTATTTACTAAATTAATATAAAAAATAAAATACAAAAATAGTATATTTT----AA-AAAA-T-AA
1 TTATGTACTAAAATAATAT-AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATTGAA
* * *
80699557 AAT-AAAAAATACCAACAAAGTGCCAAAATTAGGGTTATTTATTAAATTAATATAAAAAAACACT
65 AATAAAAAAATACCAACAAAGGGCCAAAATCAGGGATATTTATTAAATTAATATAAAAAAACACT
* **
80699621 TAAATAATGCATTTGGAACA
130 TAAATAATACATTTAAAACA
80699641 TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAA
1 TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAAT-TGAA
* *
80699706 AATAAAAAAATACCAATAAAGGGCCAAAATCAGGGATATTTATTAAATTAATAT-AAAAAATACT
65 AATAAAAAAATACCAACAAAGGGCCAAAATCAGGGATATTTATTAAATTAATATAAAAAAACACT
80699770 TAAATAATACATTTAAAACA
130 TAAATAATACATTTAAAACA
* *
80699790 TTATGGACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAA
1 TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATT-GAA
* *
80699855 AATAAAAAAAAATATCAACAAAGGGTCAAAATCA
65 AAT--AAAAAAATACCAACAAAGGGCCAAAATCA
80699889 CCTAAAAAAA
Statistics
Matches: 221, Mismatches: 15, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
141 29 0.13
142 17 0.08
145 2 0.01
146 4 0.02
148 2 0.01
149 95 0.43
150 46 0.21
151 26 0.12
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (149 bp):
TTATGTACTAAAATAATATAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATTGAAA
ATAAAAAAATACCAACAAAGGGCCAAAATCAGGGATATTTATTAAATTAATATAAAAAAACACTT
AAATAATACATTTAAAACA
Found at i:80702159 original size:33 final size:33
Alignment explanation
Indices: 80702098--80702180 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
80702088 ATCTTTGGGT
* * *
80702098 CGTATCTACAGCAGCACAACACTTCTCCCAG-C
1 CGTATCCACAGCAGTACAACACTACTCCCAGTC
* *
80702130 CAGTATCCACTGCAGTACAGCACTACTCCCAGTC
1 C-GTATCCACAGCAGTACAACACTACTCCCAGTC
*
80702164 CGTATCCACCGCAGTAC
1 CGTATCCACAGCAGTAC
80702181 TCCACTCCTC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
32 1 0.02
33 40 0.93
34 2 0.05
ACGTcount: A:0.27, C:0.40, G:0.14, T:0.19
Consensus pattern (33 bp):
CGTATCCACAGCAGTACAACACTACTCCCAGTC
Found at i:80704840 original size:25 final size:25
Alignment explanation
Indices: 80704812--80704881 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
80704802 CTCTTTTAAT
*
80704812 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80704837 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80704862 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
80704882 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80705117 original size:27 final size:27
Alignment explanation
Indices: 80705087--80705204 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
80705077 TACCCCACAA
* *
80705087 GGGTATCTCGGTAATTCTACCATATAG
1 GGGTATTTCGGTAATTCTACCCTATAG
* *
80705114 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTATAG
* *
80705141 GGTTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTATAG
* * *
80705168 GGGTATTTCGGTAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTATAG
80705195 GGGTATTTCG
1 GGGTATTTCG
80705205 ATATTTTACA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTATAG
Found at i:80705156 original size:54 final size:54
Alignment explanation
Indices: 80705077--80705203 Score: 184
Period size: 54 Copynumber: 2.4 Consensus size: 54
80705067 TGGTAATTTT
* * *
80705077 TACCCCACAAGGGTATCTCGGTAATTCTACCATATAGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCAGTAATTCTACCATATAGGGGTATTTCGATAATTC
* *
80705131 TACCCTAC-AGGGTTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTC
1 TACCCTACAAGGG-TATTTCAGTAATTCTACCATATAGGGGTATTTCGATAATTC
*
80705185 TACCTTACAAGGGTATTTC
1 TACCCTACAAGGGTATTTC
80705204 GATATTTTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
53 4 0.06
54 57 0.88
55 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
TACCCTACAAGGGTATTTCAGTAATTCTACCATATAGGGGTATTTCGATAATTC
Found at i:80705385 original size:27 final size:27
Alignment explanation
Indices: 80705194--80705387 Score: 162
Period size: 27 Copynumber: 7.2 Consensus size: 27
80705184 CTACCTTACA
* * *
80705194 AGGGTATTTCGAT-ATTTTACAAATCA
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
80705220 AGAGTATTTCGATAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
80705246 AGGGGTATTTTGGTAATTTTA-GAAGCC
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
80705273 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCG
**
80705300 AGGGGTATTTTGGTAATTTTACTGATCG
1 A-GGGTATTTTGGTAATTTTACAAATCG
** * *
80705328 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
80705355 AGGGTATTTTAGTAATTTTGCAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
80705382 AGGGTA
1 AGGGTA
80705388 AAATGGTAAT
Statistics
Matches: 140, Mismatches: 23, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
26 16 0.11
27 120 0.86
28 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:80705395 original size:81 final size:81
Alignment explanation
Indices: 80705248--80705398 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
80705238 CACAAATCAG
* * * * ***
80705248 GGGTATTTTGGTAATTTTAGAAGCCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTAAAATGG
80705313 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
*
80705329 GGGTATTTTGGTAATTTT-GTAAACCAAGGGTATTTTAGTAATTTTGCAAATCGA-GGGTAAAAT
1 GGGTATTTTGGTAATTTTAG-AAACCAAGGGTATTTTAGTAATTTTACAAA-CGAGGGGTAAAAT
80705392 GGTAATT
64 GGTAATT
80705399 CTGTAAATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 1 0.02
81 57 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.25, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTAGAAACCAAGGGTATTTTAGTAATTTTACAAACGAGGGGTAAAATGG
TAATTTTACTGATCGA
Found at i:80705396 original size:27 final size:27
Alignment explanation
Indices: 80705366--80705613 Score: 363
Period size: 27 Copynumber: 9.2 Consensus size: 27
80705356 GGGTATTTTA
* * *
80705366 GTAATTTTGCAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80705393 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80705420 GTAAGTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80705447 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80705474 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
80705501 GTAATTCTTTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
80705528 ATAATTCTATAAACCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
80705555 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
80705582 GTAATTCTGTAAATCGAGGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
80705608 GTAATT
1 GTAATT
80705614 TTACAAATTG
Statistics
Matches: 203, Mismatches: 18, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
26 11 0.05
27 192 0.95
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:80710815 original size:46 final size:44
Alignment explanation
Indices: 80710756--80710870 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 44
80710746 ACAGGACAGA
* *
80710756 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGACTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGACATTGGAG
* * * *
80710802 ACAGGATTGAGCCATGTAATTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGACATTGGAG
* **
80710846 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
80710871 GTCAAAGACA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 33 0.57
46 25 0.43
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGACATTGGAG
Found at i:80712535 original size:27 final size:27
Alignment explanation
Indices: 80712473--80712535 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
80712463 TCAGCAACTG
**
80712473 GTGCCGCCTCTGACAGAGGCTTCATGA
1 GTGCCGCCTCTGACAGAGGCTTCACCA
**
80712500 GTGTTGCCTCT-ACCAGAGGCTTCACCA
1 GTGCCGCCTCTGA-CAGAGGCTTCACCA
*
80712527 TTGCCGCCT
1 GTGCCGCCT
80712536 TTGGCACATC
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.25
Consensus pattern (27 bp):
GTGCCGCCTCTGACAGAGGCTTCACCA
Found at i:80719237 original size:39 final size:39
Alignment explanation
Indices: 80719192--80719276 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
80719182 CATAGTCTAC
80719192 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
1 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
*
80719231 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAGTTT
1 TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
*
80719270 TCTTCTT
1 TCCTCTT
80719277 CTCTGCCCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (39 bp):
TCCTCTTGTAATTAAATTCGAATTCAACATAGTGAATTT
Found at i:80719340 original size:5 final size:5
Alignment explanation
Indices: 80719330--80719358 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80719320 TCTGTGTGTT
80719330 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
80719359 CACATATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:80730107 original size:24 final size:24
Alignment explanation
Indices: 80730080--80730126 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
80730070 TTTAGAGGAT
*
80730080 TTTGTGTTTACGTTTTGAGGGTTC
1 TTTGTGTTTACGTTTTCAGGGTTC
* **
80730104 TTTGTTTTTGGGTTTTCAGGGTT
1 TTTGTGTTTACGTTTTCAGGGTT
80730127 TAGTCTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.30, T:0.57
Consensus pattern (24 bp):
TTTGTGTTTACGTTTTCAGGGTTC
Found at i:80733152 original size:54 final size:54
Alignment explanation
Indices: 80733047--80733206 Score: 241
Period size: 54 Copynumber: 3.0 Consensus size: 54
80733037 CATATGACCT
* * * * *
80733047 AAGGCTCAACTCACTTCTCGCAATATGGGTTGATTTTCGAAGAACAAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
80733101 AAGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAAACAGAAATTAA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
80733155 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
80733207 GGAAAGTAGA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
53 1 0.01
54 94 0.98
55 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:80746778 original size:10 final size:10
Alignment explanation
Indices: 80746765--80746789 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80746755 ATTTTCTAAT
80746765 TTTTTTTTGC
1 TTTTTTTTGC
80746775 TTTTTTTTGC
1 TTTTTTTTGC
80746785 TTTTT
1 TTTTT
80746790 ATATTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (10 bp):
TTTTTTTTGC
Found at i:80749013 original size:24 final size:25
Alignment explanation
Indices: 80748969--80749017 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
80748959 TTAAAGTAAT
80748969 TTAACAAAATACACAAATTTAAATA
1 TTAACAAAATACACAAATTTAAATA
*
80748994 TTAA-AAAA-ACAGAAAGTTTAAATA
1 TTAACAAAATACACAAA-TTTAAATA
80749018 AAAGATTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 12 0.55
25 4 0.18
ACGTcount: A:0.61, C:0.08, G:0.04, T:0.27
Consensus pattern (25 bp):
TTAACAAAATACACAAATTTAAATA
Found at i:80752099 original size:24 final size:23
Alignment explanation
Indices: 80752043--80752093 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
80752033 GGGGAAGGTT
80752043 TTTTATTTAAAATTAATATAATTA
1 TTTTATTTAAAATTAATATAA-TA
*
80752067 TTTTATTTAATATTAATATAA-A
1 TTTTATTTAAAATTAATATAATA
80752089 TTTTA
1 TTTTA
80752094 AATTTATTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 6 0.23
24 20 0.77
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTATTTAAAATTAATATAATA
Found at i:80752130 original size:18 final size:18
Alignment explanation
Indices: 80752107--80752141 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80752097 TTATTACTAT
80752107 TATTTTAAAATATTTTTG
1 TATTTTAAAATATTTTTG
* *
80752125 TATTTTTATATATTTTT
1 TATTTTAAAATATTTTT
80752142 AAATTTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TATTTTAAAATATTTTTG
Found at i:80758275 original size:20 final size:20
Alignment explanation
Indices: 80758237--80758275 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80758227 TGCTCTAGGA
*
80758237 TTAGTTTAACATTATTTTTT
1 TTAGTTTAACATTACTTTTT
*
80758257 TTAGTTTAACGTTACTTTT
1 TTAGTTTAACATTACTTTT
80758276 GAAAAGTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (20 bp):
TTAGTTTAACATTACTTTTT
Found at i:80758293 original size:13 final size:13
Alignment explanation
Indices: 80758271--80758322 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
80758261 TTTAACGTTA
*
80758271 CTTTTGAAAAGTT
1 CTTTTAAAAAGTT
*
80758284 CTTTTAAAAAGTG
1 CTTTTAAAAAGTT
*
80758297 ATTTTAAAAAGTAT
1 CTTTTAAAAAGT-T
*
80758311 -TTTTGAAAAGTT
1 CTTTTAAAAAGTT
80758323 TTGTTTAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
12 1 0.03
13 32 0.97
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (13 bp):
CTTTTAAAAAGTT
Found at i:80758307 original size:26 final size:26
Alignment explanation
Indices: 80758272--80758321 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
80758262 TTAACGTTAC
*
80758272 TTTTGAAAAGT-TCTTTTAAAAAGTGA
1 TTTTAAAAAGTAT-TTTTAAAAAGTGA
*
80758298 TTTTAAAAAGTATTTTTGAAAAGT
1 TTTTAAAAAGTATTTTTAAAAAGT
80758322 TTTGTTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (26 bp):
TTTTAAAAAGTATTTTTAAAAAGTGA
Found at i:80758723 original size:20 final size:20
Alignment explanation
Indices: 80758698--80758738 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80758688 ATTATATTTT
80758698 TCAATATTATTAAACATACA
1 TCAATATTATTAAACATACA
80758718 TCAATATTATTAAACATACA
1 TCAATATTATTAAACATACA
80758738 T
1 T
80758739 ATTTAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (20 bp):
TCAATATTATTAAACATACA
Found at i:80758868 original size:15 final size:15
Alignment explanation
Indices: 80758823--80758870 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
80758813 CAATTTTAAT
80758823 TTAATAATAAATATTTA
1 TTAATAATAAATA--TA
*
80758840 TTACAATTATAAATATA
1 TT--AATAATAAATATA
80758857 TTAATAATAAATAT
1 TTAATAATAAATAT
80758871 TTTGTAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 11 0.41
17 6 0.22
19 10 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATAATAAATATA
Found at i:80763286 original size:23 final size:22
Alignment explanation
Indices: 80763255--80763299 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
80763245 TTAAGTGTGG
80763255 GGAGGTTGT-TTATATTTTAGTTT
1 GGAGGTTGTATT-TATTTT-GTTT
*
80763278 GGAGTTTGTATTTATTTTGTTT
1 GGAGGTTGTATTTATTTTGTTT
80763300 TGAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 14 0.70
24 2 0.10
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (22 bp):
GGAGGTTGTATTTATTTTGTTT
Found at i:80764602 original size:11 final size:11
Alignment explanation
Indices: 80764586--80764616 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
80764576 GTAATGTTAA
80764586 AATATATACAT
1 AATATATACAT
80764597 AATATATACAT
1 AATATATACAT
80764608 ATATATATA
1 A-ATATATA
80764617 AAATGAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:80764906 original size:24 final size:24
Alignment explanation
Indices: 80764879--80764994 Score: 71
Period size: 24 Copynumber: 4.9 Consensus size: 24
80764869 ACATATACAT
*
80764879 ATAATAGTGTTTAAAAATATATAC
1 ATAATAGTGTATAAAAATATATAC
* ** *
80764903 ATAAGA-TGATATGGAAATATGTAC
1 ATAATAGTG-TATAAAAATATATAC
*
80764927 ATGGAATAGTATATAAAAATATA-AC
1 AT--AATAGTGTATAAAAATATATAC
* * *
80764952 -TAATAATAT-TGAAAATATATAC
1 ATAATAGTGTATAAAAATATATAC
*
80764974 ATAATA-TATATAAAACATATA
1 ATAATAGTGTATAAAA-ATATA
80764995 CGATATATAC
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
21 9 0.13
22 12 0.17
23 11 0.15
24 24 0.34
25 2 0.03
26 12 0.17
27 1 0.01
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.33
Consensus pattern (24 bp):
ATAATAGTGTATAAAAATATATAC
Found at i:80764982 original size:22 final size:23
Alignment explanation
Indices: 80764892--80765003 Score: 90
Period size: 22 Copynumber: 4.8 Consensus size: 23
80764882 ATAGTGTTTA
*
80764892 AAAATATATACATAAGATGATATG
1 AAAATATATACATAATAT-ATATG
* * *
80764916 GAAATATGTACATGGAATAGTATATA
1 AAAATATATACAT--AATA-TATATG
80764942 AAAATATA-AC-TAATA-ATATTG
1 AAAATATATACATAATATATA-TG
80764963 AAAATATATACATAATATATAT-
1 AAAATATATACATAATATATATG
*
80764985 AAAACATATACGAT-ATATA
1 AAAATATATAC-ATAATATA
80765004 CATATACATT
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
20 3 0.04
21 9 0.12
22 21 0.29
23 8 0.11
24 15 0.21
25 2 0.03
26 13 0.18
27 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.31
Consensus pattern (23 bp):
AAAATATATACATAATATATATG
Found at i:80765554 original size:6 final size:6
Alignment explanation
Indices: 80765543--80765570 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
80765533 AAATATATAC
80765543 ATGTAT ATGTAT ATGTAT ATGTAT ATGT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGT
80765571 GTTAATAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:80765745 original size:3 final size:3
Alignment explanation
Indices: 80765739--80765801 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
80765729 TAAATATAAC
*
80765739 ATA ATA AT- ATA A-A ATA ATA ATA ATA ATA ATA GTA ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
**
80765782 ATA ATA GCA ATA TATA ATA A
1 ATA ATA ATA ATA -ATA ATA A
80765802 AAACTTAATC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
2 6 0.12
3 38 0.78
4 5 0.10
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:80765749 original size:13 final size:13
Alignment explanation
Indices: 80765731--80765787 Score: 60
Period size: 15 Copynumber: 4.1 Consensus size: 13
80765721 AATAATACTA
*
80765731 AATATAACATAAT
1 AATATAAAATAAT
80765744 AATATAAAATAAT
1 AATATAAAATAAT
*
80765757 AATAATAATAATAGT
1 AAT-ATAA-AATAAT
80765772 AATAATATAAATAAT
1 AAT-ATA-AAATAAT
80765787 A
1 A
80765788 GCAATATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
13 15 0.39
14 4 0.11
15 18 0.47
16 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (13 bp):
AATATAAAATAAT
Found at i:80766275 original size:11 final size:11
Alignment explanation
Indices: 80766259--80766283 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80766249 AAAGAAAAAA
80766259 AAGAGAGAAGG
1 AAGAGAGAAGG
80766270 AAGAGAGAAGG
1 AAGAGAGAAGG
80766281 AAG
1 AAG
80766284 GGGAAAGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (11 bp):
AAGAGAGAAGG
Found at i:80767429 original size:35 final size:35
Alignment explanation
Indices: 80767383--80767452 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
80767373 TTTGAATTTC
80767383 AAGTAATTACTAAGATAGGGAGATGCCTAATGTTT
1 AAGTAATTACTAAGATAGGGAGATGCCTAATGTTT
80767418 AAGTAATTACTAAGATAGGGAGATGCCTAATGTTT
1 AAGTAATTACTAAGATAGGGAGATGCCTAATGTTT
80767453 TGAAAGCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (35 bp):
AAGTAATTACTAAGATAGGGAGATGCCTAATGTTT
Found at i:80771171 original size:26 final size:26
Alignment explanation
Indices: 80771125--80771177 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
80771115 TCAAACATGC
*
80771125 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
80771151 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
80771177 A
1 A
80771178 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:80772827 original size:103 final size:104
Alignment explanation
Indices: 80772648--80772912 Score: 415
Period size: 103 Copynumber: 2.6 Consensus size: 104
80772638 AACCGTTATT
* * * * *
80772648 GGTGGATCTCGCACTTAGCACCATCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
80772713 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
80772751 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
80772816 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
80772855 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
80772913 TTATGTACAA
Statistics
Matches: 148, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 82 0.55
104 66 0.45
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:80773274 original size:30 final size:29
Alignment explanation
Indices: 80773240--80773304 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
80773230 TAATCCACCA
80773240 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
80773270 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
80773300 CCCAA
1 CCCAA
80773305 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:80773278 original size:31 final size:30
Alignment explanation
Indices: 80773247--80773304 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80773237 CCACCCAACT
80773247 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
80773277 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
80773305 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:80789151 original size:215 final size:215
Alignment explanation
Indices: 80788796--80789258 Score: 689
Period size: 215 Copynumber: 2.2 Consensus size: 215
80788786 CTAAAAGGGT
** ** *
80788796 AAATAGA-CCTTTAGTCCAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTTGACC
1 AAATAGACCCTTT-GTTAAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTCAACA
* * *
80788860 CAAAACAACACCGTTTCAGGTGCTTATCCATTAAAACGGCTCAAGGACCAAATTGAAACAAAACT
65 CAAAACAACACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACT
*
80788925 ACAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATTGAAACGCGTTAT-
130 ACAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATT-AAACGCGCTATG
* *
80788989 AAAGCAGAAGGACTGATCTCGC
194 AAAGCAAAAGAACTGATCTCGC
** *
80789011 AAATAGACCCTTTGTTAAAAACACGTTGATCCTGGAATGGGTCGGGTCAGATCATGGGTCAACAC
1 AAATAGACCCTTTGTTAAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTCAACAC
**
80789076 AAAACGGCACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACTA
66 AAAACAACACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACTA
* *
80789141 CAAGTTTGTGGTAAAATTTTAAAAAATAGAAAAATGAGATAGGACTAAATTAAACGCGCTGTGAA
131 CAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATTAAACGCGCTATGAA
* *
80789206 AGCAAAAGAATTGATCTCGT
196 AGCAAAAGAACTGATCTCGC
*
80789226 AAATAGACCCTTTGTTGAAAACACGCA-GATCCT
1 AAATAGACCCTTTGTTAAAAACACG-AGGATCCT
80789259 TTGGAGTGGG
Statistics
Matches: 223, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
214 9 0.04
215 209 0.94
216 5 0.02
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (215 bp):
AAATAGACCCTTTGTTAAAAACACGAGGATCCTGGAATGGGTCAGGTCAGATCATGGGTCAACAC
AAAACAACACCGTTTCAGGTGCTTACCCATTAAAACGGCTCAAGGACCAAACTAAAACAAAACTA
CAAGTTTGTGGTAAAATTTAAAAAAATAGAAAAATGAGATAGGACTAAATTAAACGCGCTATGAA
AGCAAAAGAACTGATCTCGC
Found at i:80791426 original size:14 final size:14
Alignment explanation
Indices: 80791393--80791420 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80791383 AAGCTTACTG
80791393 TAGTTTGCTTTGAT
1 TAGTTTGCTTTGAT
80791407 TAGTTTGCTTTGAT
1 TAGTTTGCTTTGAT
80791421 ATGTTTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.57
Consensus pattern (14 bp):
TAGTTTGCTTTGAT
Found at i:80791807 original size:128 final size:130
Alignment explanation
Indices: 80791644--80791977 Score: 444
Period size: 128 Copynumber: 2.6 Consensus size: 130
80791634 ATTCGTTTAA
**
80791644 AAATTCCTTAAAACGAAGGCAATGTTTGATGTTTGGAAATTCG-GGAAATCGTGCCCTATCGTGC
1 AAATT-CTTAAAAC-AAGGCAATGTTCAATGTTTGGAAATTCGAGG-AATCGTGCCCTATCGTGC
80791708 TGGGTTTCGATTTTCCCGTTTGTTC-AAAATAATCGAATATTCCTTTAGAATTTCACTCATG-TT
63 TGGGTTTCGATTTTCCCGTTTGTTCAAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTT
80791771 TCC
128 TCC
* * * * *
80791774 CAATTCTTAAAACAAGGCAATATTCAATGTTTGGAAATTCGAGGAATCGTGCCTTATCATACTGG
1 AAATTCTTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGG
* * * * *
80791839 GTTTCGA-TTTCCTGTTTGTTCAAAAATAATTGAATATTCCTTTTGAATTTCACTCGTGTTTTCT
66 GTTTCGATTTTCCCGTTTGTTCAAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCC
* * * ** *
80791903 AAATTC-TAAAGCGAGGCAAGGTTCAATGTTTGGAAATTCGAGGAATCGCACCCTACCGTGCTGG
1 AAATTCTTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGG
80791967 GTTTCGATTTT
66 GTTTCGATTTT
80791978 TCGTTGGACT
Statistics
Matches: 177, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
127 13 0.07
128 138 0.78
129 22 0.12
130 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (130 bp):
AAATTCTTAAAACAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGG
GTTTCGATTTTCCCGTTTGTTCAAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCC
Found at i:80792837 original size:13 final size:13
Alignment explanation
Indices: 80792819--80792851 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80792809 TGTTTATACA
*
80792819 TATTTTTTGTTTT
1 TATTTTTTATTTT
80792832 TA-TTTTTATTTT
1 TATTTTTTATTTT
80792844 TATTTTTT
1 TATTTTTT
80792852 TGCTATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:80793139 original size:44 final size:45
Alignment explanation
Indices: 80793075--80793807 Score: 463
Period size: 44 Copynumber: 15.9 Consensus size: 45
80793065 ATATTAGTAA
* *
80793075 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * * *
80793119 CTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTAGTAGCTTTAGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--T-G--ATA-G
* * * ** * * * *
80793170 CTTTAGTTTATTCCACAGCAACTTCAGGGAGATAAGACTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* *
80793215 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* *
80793259 CTTCAATCTGCTCCACTGCCACTTCAGGGAGATAAGATTCGCCATGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TGATAG
* * * * ** *
80793309 CTTCAATATGCTCTATTGTAACTTCATCGAGATAAGATTCGCCATGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TGATAG
* *
80793359 CTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTT-ATGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * ** * *
80793403 CTTCAATCTGCTTCACTGCAACTGCAATGAAATAAGATTTG-TGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * * *
80793447 CTTCAATATGCTCCATTGCAACTTCAGGGAGATAAAATTTGTCATGTTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--A---TAG
* * ** *
80793497 CTTTAATCTGGTCCACTGCAACTTCAAAGAGATAAGATTT-ATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * * * * * * *
80793541 CTTTAATCTCCTCTACTGCAATTTCAGAGAGAGAAGATTTGTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * *
80793586 CTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCACCATGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TGATAG
* * *
80793636 CTTCAATTTGTTCCACTGCAACTTCAGGGAGAAAAGATTT-ATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * * * * ** * ** *
80793680 CTTTAATCTCCTCTACTGTAATTTCAGATAGATAAAATTTTCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
* * * * * **
80793725 CTTAAATCTACACCACTGCAACTTCAGGGAGATTAGA-TTAACGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
** * * *
80793769 CTTCAATCTATTCCACTGCAACTTAAGAGAAATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
80793808 CACCATAATG
Statistics
Matches: 537, Mismatches: 124, Indels: 55
0.75 0.17 0.08
Matches are distributed among these distances:
44 246 0.46
45 99 0.18
46 3 0.01
47 2 0.00
48 1 0.00
49 3 0.01
50 151 0.28
51 32 0.06
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATAG
Found at i:80793451 original size:188 final size:188
Alignment explanation
Indices: 80793181--80793535 Score: 471
Period size: 188 Copynumber: 1.9 Consensus size: 188
80793171 TTTAGTTTAT
* * *
80793181 TCCACAGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATCTGCTCCACTACAACTTCAGGGAG
1 TCCACAGCAACTTCAGGGAGATAAGACTT-CTATCTTCAATCTGCTCCACTACAACTGCAAGGAA
* * *
80793246 ATAAGATTTGTGGCTTCAATCTGCTCCACTGCCACTTCAGGGAGATAAGATTCGCCATGATAACT
65 ATAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTCGCCATGATAACT
* * * **
80793311 TCAATATGCTCTATTGTAACTTCATCGAGATAAGATTCGCCATGATAACTTCAATATGC
130 TCAATATGCTCCACTGCAACTTCAAAGAGATAAGATTCGCCATGATAACTTCAATATGC
* * * *
80793370 TCCACTGCAACTTCAGGGAGATAAGA-TT-TATGGCTTCAATCTGCTTCACTGCAACTGCAATGA
1 TCCACAGCAACTTCAGGGAGATAAGACTTCTAT--CTTCAATCTGCTCCACTACAACTGCAAGGA
* * * *
80793433 AATAAGATTTGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAAATTTGTCATGTTAAC
64 AATAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTCGCCATGATAAC
* * *
80793498 TTTAATCTGGTCCACTGCAACTTCAAAGAGATAAGATT
129 TTCAATATGCTCCACTGCAACTTCAAAGAGATAAGATT
80793536 TATAACTTTA
Statistics
Matches: 142, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
186 3 0.02
188 114 0.80
189 25 0.18
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (188 bp):
TCCACAGCAACTTCAGGGAGATAAGACTTCTATCTTCAATCTGCTCCACTACAACTGCAAGGAAA
TAAGATTTGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAAATTCGCCATGATAACTT
CAATATGCTCCACTGCAACTTCAAAGAGATAAGATTCGCCATGATAACTTCAATATGC
Found at i:80793561 original size:94 final size:93
Alignment explanation
Indices: 80793063--80793675 Score: 371
Period size: 94 Copynumber: 6.5 Consensus size: 93
80793053 AACTTTAAGG
* * * *
80793063 AGATATTAGTAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG---TG--GCTTT
1 AGAT-TTA-TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGTAACTTC
* *
80793123 AATCTGCTCTACTGCAACTTCAGAGAGATA
64 AATCTGCTCCACTGCAACTTCAAAGAGATA
* * * * ** * *
80793153 AGATTAGTAGCTTTAGGCTTTAGTTTATTCCACAGCAACTTCAGGGAGATAAGACTTG-C---TA
1 AGATT--TA----TA-ACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGTA
* * **
80793214 TCTTCAATCTGCTCCACTACAACTTCAGGGAGATA
59 ACTTCAATCTGCTCCACTGCAACTTCAAAGAGATA
* ** * * * *
80793249 AGATTTGTGGCTTCAATCTGCTCCACTGCCACTTCAGGGAGATAAGATTCGCCATGATAACTTCA
1 AGATTTATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATG-TAACTTCA
* * * * **
80793314 ATATGCTCTATTGTAACTTCATCGAGATA
65 ATCTGCTCCACTGCAACTTCAAAGAGATA
*
80793343 AGATTCGCCATGATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGA-TT-T-ATG--G
1 AGATT-----T-ATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGTAA
* * * *
80793403 CTTCAATCTGCTTCACTGCAACTGCAATGAAATA
60 CTTCAATCTGCTCCACTGCAACTTCAAAGAGATA
* ** * * *
80793437 AGATTTGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAAATTTGTCATGTTAACTTTA
1 AGATTTATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATG-TAACTTCA
*
80793502 ATCTGGTCCACTGCAACTTCAAAGAGATA
65 ATCTGCTCCACTGCAACTTCAAAGAGATA
* * * * * * * * *
80793531 AGATTTATAACTTTAATCTCCTCTACTGCAATTTCAGAGAGAGAAGATTTG---T-TATCTTAAA
1 AGATTTATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGTAACTTCAA
**
80793592 TCTGCTCCACTGCAACTTCAGGGAGATA
66 TCTGCTCCACTGCAACTTCAAAGAGATA
* * * *
80793620 AAATTCACCATGATAACTTCAATTTGTTCCACTGCAACTTCAGGGAGAAAAGATTT
1 AGATT-----T-ATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTT
80793676 ATAGCTTTAA
Statistics
Matches: 404, Mismatches: 87, Indels: 59
0.73 0.16 0.11
Matches are distributed among these distances:
88 36 0.09
89 73 0.18
90 7 0.02
91 6 0.01
94 135 0.33
95 71 0.18
96 35 0.09
97 3 0.01
99 2 0.00
100 36 0.09
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (93 bp):
AGATTTATAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGTAACTTCAA
TCTGCTCCACTGCAACTTCAAAGAGATA
Found at i:80793660 original size:139 final size:139
Alignment explanation
Indices: 80793072--80793757 Score: 591
Period size: 139 Copynumber: 4.9 Consensus size: 139
80793062 GAGATATTAG
* * * * *
80793072 TAACTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
* * * * * ** *
80793137 CAACTTCAGAGAGATAAGATTAGTAGCTTTAGGCTTTAGTTTATTCCACAGCAACTTCAGGGAGA
66 CAATTTCAGAGAGATAAGATT--T-G--TTA-TCTTAAATCTGCTCCACTGCAACTTCAGGGAGA
*
80793202 TAAGACTT-G-C-T-A
125 TAA-AATTCGCCATGA
* * * * * * *
80793214 T--CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
* * * * * * * * * * **
80793277 CCACTTCAGGGAGATAAGATTCGCCATGATAACTTCAATATGCTCTATTGTAACTTCATCGAGAT
66 CAATTTCAGAGAGATAAGATT-----TGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGAT
*
80793342 AAGATTCGCCATGA
126 AAAATTCGCCATGA
* * *
80793356 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGCTTCAATCTGCT-TCACT
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTCCTCT-ACT
* * * ** * * *
80793420 GCAACTGCA-ATGAAATAAGATTTG-TGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAA
65 GCAATTTCAGA-GAGATAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAA
* * *
80793483 ATTTGTCATGT
129 ATTCGCCATGA
* * * ** *
80793494 TAACTTTAATCTGGTCCACTGCAACTTCAAAGAGATAAGATTTATAACTTTAATCTCCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
*
80793559 CAATTTCAGAGAGAGAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAAT
66 CAATTTCAGAGAGATAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAAT
*
80793624 TCACCATGA
131 TCGCCATGA
* * *
80793633 TAACTTCAATTTGTTCCACTGCAACTTCAGGGAGAAAAGATTTATAGCTTTAATCTCCTCTACTG
1 TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
* * * * *
80793698 TAATTTCAGATAGATAAAATTT-TCTATCTTAAATCTACACCACTGCAACTTCAGGGAGAT
66 CAATTTCAGAGAGATAAGATTTGT-TATCTTAAATCTGCTCCACTGCAACTTCAGGGAGAT
80793758 TAGATTAACG
Statistics
Matches: 453, Mismatches: 76, Indels: 33
0.81 0.14 0.06
Matches are distributed among these distances:
138 114 0.25
139 180 0.40
140 80 0.18
141 1 0.00
142 4 0.01
143 1 0.00
144 73 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (139 bp):
TAACTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTCCTCTACTG
CAATTTCAGAGAGATAAGATTTGTTATCTTAAATCTGCTCCACTGCAACTTCAGGGAGATAAAAT
TCGCCATGA
Found at i:80799845 original size:13 final size:12
Alignment explanation
Indices: 80799813--80799846 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
80799803 TTCTTTTATA
80799813 TATATAATAACT
1 TATATAATAACT
80799825 TA-ATAATATACT
1 TATATAATA-ACT
80799837 TATATAATAA
1 TATATAATAA
80799847 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:80804801 original size:19 final size:20
Alignment explanation
Indices: 80804777--80804822 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
80804767 TTGTGAAATT
*
80804777 TAATGCATAT-GATGCAATG
1 TAATGCAAATGGATGCAATG
*
80804796 TAATGCAAATGGATGGAATG
1 TAATGCAAATGGATGCAATG
80804816 -AATGCAA
1 TAATGCAA
80804823 TAAAAAAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGGATGCAATG
Found at i:80818084 original size:11 final size:10
Alignment explanation
Indices: 80818059--80818096 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 10
80818049 TTACAAAAAT
*
80818059 TAAAAAATTG
1 TAAAAAATTA
80818069 T-AAAAATTA
1 TAAAAAATTA
80818078 TACAAAAATTA
1 TA-AAAAATTA
80818089 TAAAAAAT
1 TAAAAAAT
80818097 AAAAAATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 8 0.32
10 7 0.28
11 10 0.40
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:80818493 original size:19 final size:20
Alignment explanation
Indices: 80818464--80818503 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
80818454 GTCAAAAGTG
80818464 TTTATAATTTTT-TATTTAAA
1 TTTATAATTTTTAT-TTTAAA
80818484 TTTA-AATTTTTATTTTAAA
1 TTTATAATTTTTATTTTAAA
80818503 T
1 T
80818504 AAAATTGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTATAATTTTTATTTTAAA
Found at i:80818508 original size:18 final size:18
Alignment explanation
Indices: 80818472--80818509 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80818462 TGTTTATAAT
*
80818472 TTTTTATTTAAATTTAAA
1 TTTTTATTTAAATTAAAA
80818490 TTTTTATTTTAAA-TAAAA
1 TTTTTA-TTTAAATTAAAA
80818508 TT
1 TT
80818510 GCCACATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTATTTAAATTAAAA
Found at i:80820158 original size:24 final size:25
Alignment explanation
Indices: 80820116--80820162 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
80820106 TAAAAATACA
*
80820116 AGATTTGTGTTTTTTTTTTGTCAAC
1 AGATTTGTGATTTTTTTTTGTCAAC
80820141 AGATTTGT-ATTTTTTTTTGTCA
1 AGATTTGTGATTTTTTTTTGTCA
80820163 GAAGACTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.17, C:0.06, G:0.15, T:0.62
Consensus pattern (25 bp):
AGATTTGTGATTTTTTTTTGTCAAC
Found at i:80824835 original size:20 final size:20
Alignment explanation
Indices: 80824812--80824855 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
80824802 AGTCTAATGC
80824812 CGCCTATTGCAGTCCAGTGA
1 CGCCTATTGCAGTCCAGTGA
80824832 CGCCTATTGCAGTCCAGTGA
1 CGCCTATTGCAGTCCAGTGA
80824852 CGCC
1 CGCC
80824856 AATCTGACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.34, G:0.25, T:0.23
Consensus pattern (20 bp):
CGCCTATTGCAGTCCAGTGA
Found at i:80835799 original size:126 final size:127
Alignment explanation
Indices: 80835621--80835915 Score: 348
Period size: 127 Copynumber: 2.3 Consensus size: 127
80835611 CCCTCAACAT
* * ** *
80835621 AAGGACATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATTGTGCTGGGTTACGA-CTTTT
1 AAGGA-ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCATACTGGGTTACGATCTTTT
* *
80835685 TCATCCAACTGAACTATGGAATATCC-TTGTGAGA-TTTCATCAATG-TTTTCTTAAATTAAAAC
65 TCATCCAACTGAAATACGGAATATCCTTTG-GA-ATTTTCATCAATGCTTTT-TTAAATTAAAAC
80835747 G
127 G
* * *
80835748 -AGGCAATATTTCGTGTTTGGGAGCTTGAGAGATCGTGCCCAATCATACTGGGTTTCGATTTTTT
1 AAGG-AATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCATACTGGGTTACGATCTTTT
* * * *
80835812 TCGTTCAACTGAAATACGGAATATCCTTTGGAATTTTCATCCATGCTTTTTTAAATTAAAATG
65 TCATCCAACTGAAATACGGAATATCCTTTGGAATTTTCATCAATGCTTTTTTAAATTAAAACG
* * *
80835875 AAGGAGTATTTCGTATTTGGGGAGTTTGGGAGATCGTGCCC
1 AAGGAATATTTCGTGTTT-GGGAGTTTGAGAGATCGTGCCC
80835916 GATCGTGCTT
Statistics
Matches: 143, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
126 50 0.35
127 63 0.44
128 30 0.21
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (127 bp):
AAGGAATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCATACTGGGTTACGATCTTTTT
CATCCAACTGAAATACGGAATATCCTTTGGAATTTTCATCAATGCTTTTTTAAATTAAAACG
Found at i:80835885 original size:127 final size:124
Alignment explanation
Indices: 80835627--80836061 Score: 417
Period size: 126 Copynumber: 3.5 Consensus size: 124
80835617 ACATAAGGAC
* * * * *
80835627 ATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATTGTGCTGGGTTACGACTTTTTCATCCA
1 ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA-TTTTTCATTCA
* * * *
80835692 ACTGAACTATGGAATATCC-TTGTGAGATTTCATCAATGTTTTCTTAAATTAAAACGAGGCA
65 ACTGAAATACGGAATATCCTTTG-GA-ATTTCATCCATGTTTTCTTAAATTAAAATGAGGCA
* * * *
80835753 ATATTTCGTGTTTGGGAGCTTGAGAGATCGTGCCCAATCATACTGGGTTTCGATTTTTTTCGTTC
1 ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTTCATTC
80835818 AACTGAAATACGGAATATCCTTTGGAATTTTCATCCATGCTTTT-TTAAATTAAAATGAAGG-A
64 AACTGAAATACGGAATATCCTTTGGAA-TTTCATCCATG-TTTTCTTAAATTAAAATG-AGGCA
* * * * ** * *
80835880 GTATTTCGTATTTGGGGAGTTTGGGAGATCGTGCCCGATCGTGCTTTGTTTCGATTTTCCATTCG
1 ATATTTCGTGTTT-GGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCA
* ** * * * *
80835945 ACTAAAATACAAAATATCCTTTTGAAATTTCATCCATGTTTTCTCAAATTAAAATAATGCA
65 ACTGAAATACGGAATATCC-TTTGGAATTTCATCCATGTTTTCTTAAATTAAAATGAGGCA
* * * * * * * * * *
80836006 ATGTTTCGTATTTAGAAATTCGATAAATTGTGCCCAATCGTGTTGGGTTTCGATTT
1 ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTT
80836062 ACCGTTTGAG
Statistics
Matches: 253, Mismatches: 47, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
125 37 0.15
126 105 0.42
127 68 0.27
128 43 0.17
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (124 bp):
ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCAA
CTGAAATACGGAATATCCTTTGGAATTTCATCCATGTTTTCTTAAATTAAAATGAGGCA
Found at i:80847265 original size:65 final size:65
Alignment explanation
Indices: 80847136--80847265 Score: 172
Period size: 65 Copynumber: 2.0 Consensus size: 65
80847126 GCATTCATGA
* ** * * *
80847136 TACATCTAGTTAGGAGCATTTGATTCATTTTTTATCATAGAATCCTAGTTATTTATCATGAGCAT
1 TACATCTAGTTAGGAACATTTGATTCATTTTCGATCATAGAATCCTAATTATTTAGCATAAGCAT
* *
80847201 TACATTCTAGTTAGGAACATTTGATTCA-TTTCGATCATAGCATCCTAATTATTTGGCATAAGCA
1 TACA-TCTAGTTAGGAACATTTGATTCATTTTCGATCATAGAATCCTAATTATTTAGCATAAGCA
80847265 T
65 T
80847266 AGGAAACTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 34 0.61
66 22 0.39
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (65 bp):
TACATCTAGTTAGGAACATTTGATTCATTTTCGATCATAGAATCCTAATTATTTAGCATAAGCAT
Found at i:80849489 original size:128 final size:126
Alignment explanation
Indices: 80849237--80849669 Score: 424
Period size: 126 Copynumber: 3.4 Consensus size: 126
80849227 ACATAAGGAC
* * **
80849237 ATATTTCGTGTTTGGAAGTTTGAGAAATCGTGCCCAATCGTGCTGGGTTAGGACTTTTTCATTCA
1 ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGACTTTTTCATTCA
* ** *
80849302 ACTGAACTATGGAATATCCTTGTGAGATTTCATCCATGTTTTCTTAAATTAAAACGAGGCA
66 ACTGAAATACAGAATATCCTTGTGAGATTTCATCCATGTTTTCTAAAATTAAAACGAGGCA
* * * * *
80849363 ATATTTCGTGTTTGGGAGCTTGAGAGATCGTGCCCAATTGTGCTGAGTTTCGATTTTTTTTCGTT
1 ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA--CTTTTTCATT
* *
80849428 CAACTGAAATACAGAATATCCTT-TG-GAATTTTCGTCCATGCTTTT-TAAAATTAAAATGAGGC
64 CAACTGAAATACAGAATATCCTTGTGAG-A-TTTCATCCATG-TTTTCTAAAATTAAAACGAGGC
80849490 A
126 A
* * * *
80849491 GTATTTCGTATTTGGTGAGTTTGGGAGATCGTGCCCAATCGTGCTGGGTTTCGAC-TTTGCATTC
1 ATATTTCGTGTTTGG-GAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGACTTTTTCATTC
* * * * * ** * * ** *
80849555 GACTAAAATACAAAATATCCTTTTGAAATTTCATTTATTTTTTCTCAAATTAAAATAAGGAA
65 AACTGAAATACAGAATATCCTTGTGAGATTTCATCCATGTTTTCTAAAATTAAAACGAGGCA
* * * * * * * * *
80849617 ATGTTTCGTATTTAGAAATTCGATAAATCGTGCCCAATAGTGCTGGGTTTCGA
1 ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA
80849670 TTTGCCGTTT
Statistics
Matches: 253, Mismatches: 45, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
125 35 0.14
126 107 0.42
127 6 0.02
128 67 0.26
129 38 0.15
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (126 bp):
ATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGACTTTTTCATTCA
ACTGAAATACAGAATATCCTTGTGAGATTTCATCCATGTTTTCTAAAATTAAAACGAGGCA
Found at i:80853310 original size:14 final size:14
Alignment explanation
Indices: 80853271--80853311 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
80853261 TTATTAAGTA
80853271 ATTAATAATATTTAT
1 ATTAAT-ATATTTAT
* *
80853286 ATTATTCTATTTAT
1 ATTAATATATTTAT
80853300 ATTAATATATTT
1 ATTAATATATTT
80853312 CGATTTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATATATTTAT
Found at i:80855183 original size:40 final size:40
Alignment explanation
Indices: 80855036--80855218 Score: 136
Period size: 40 Copynumber: 4.5 Consensus size: 40
80855026 TTAGCGGTAT
* * * *
80855036 TTTTCCCATAAACGTTGCGAAAGGTGAAGA-AATAGCGGCA
1 TTTTCCCATAAACGCTGCTAAAGGT-AAAACAATAGCAGCA
* * *
80855076 TTTTCCCCTAAACGCAGCTAAAGGTATAACAACAATAGCGATG-T
1 TTTTCCCATAAACGCTGCTAAAGG--TAA-AACAATAGC-A-GCA
* * * *
80855120 TTTTCCCATAAACACCGCAAAAGGTAAAACAATAGCAGCG
1 TTTTCCCATAAACGCTGCTAAAGGTAAAACAATAGCAGCA
* ** * *
80855160 TTTTCCCATAAACGCTGTTAAAGGTAAAGTAATAGCGGTA
1 TTTTCCCATAAACGCTGCTAAAGGTAAAACAATAGCAGCA
*
80855200 TTTTGCCTATAAACGCTGC
1 TTTT-CCCATAAACGCTGC
80855219 GAATATTTTT
Statistics
Matches: 112, Mismatches: 23, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
39 1 0.01
40 56 0.50
41 23 0.21
42 5 0.04
43 6 0.05
44 20 0.18
45 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (40 bp):
TTTTCCCATAAACGCTGCTAAAGGTAAAACAATAGCAGCA
Found at i:80855325 original size:25 final size:25
Alignment explanation
Indices: 80855291--80855349 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
80855281 CCTCAAATCG
* *
80855291 TTTTCCCCAAATCCCTAACTTAGTT
1 TTTTCCCCAAATCCCTAACATAATT
*
80855316 TTTTCCCCAATTCCCTAACATAATT
1 TTTTCCCCAAATCCCTAACATAATT
*
80855341 TTTTTCCCA
1 TTTTCCCCA
80855350 TCCGTCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.32, G:0.02, T:0.42
Consensus pattern (25 bp):
TTTTCCCCAAATCCCTAACATAATT
Found at i:80863714 original size:43 final size:44
Alignment explanation
Indices: 80863636--80863727 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 44
80863626 GCGTTTTCCC
* * * * *
80863636 ACAAACGTCGCTATAGAACATGATCCTTAGCGGCGCTTTTA-CT
1 ACAAACGCCGCTAAAAAACATGATCCTTAGAGGCGCTTCTAGCT
*
80863679 ACAAACGCCGCTAAAAAACATGATCTTTTA-AGGCGCTTCTAGCT
1 ACAAACGCCGCTAAAAAACATGATC-CTTAGAGGCGCTTCTAGCT
80863723 ACAAA
1 ACAAA
80863728 TGCCACAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 31 0.76
44 10 0.24
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
ACAAACGCCGCTAAAAAACATGATCCTTAGAGGCGCTTCTAGCT
Found at i:80864013 original size:13 final size:14
Alignment explanation
Indices: 80863979--80864015 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
80863969 TATTTATAAA
*
80863979 AAATATATTATTTT
1 AAATATATTATATT
80863993 AAAT-TATT-TATT
1 AAATATATTATATT
80864005 AAATATATTAT
1 AAATATATTAT
80864016 TTGTATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 7 0.35
13 8 0.40
14 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
AAATATATTATATT
Found at i:80864215 original size:28 final size:30
Alignment explanation
Indices: 80864135--80864217 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 30
80864125 TGCGCAAATC
* *
80864135 AACTACCTTTTTTAGTTGAAATAATTTTATCA
1 AACTA-CTTTTTTAGCTGAAATACTTTTAT-A
* * *
80864167 AACTACCTTTTTAACTTAAATACTTTT-T-
1 AACTACTTTTTTAGCTGAAATACTTTTATA
*
80864195 ATCTACTTTTTTAGCTGAAATAC
1 AACTACTTTTTTAGCTGAAATAC
80864218 CAATTTAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
28 19 0.45
30 1 0.02
31 17 0.40
32 5 0.12
ACGTcount: A:0.33, C:0.16, G:0.05, T:0.47
Consensus pattern (30 bp):
AACTACTTTTTTAGCTGAAATACTTTTATA
Found at i:80865202 original size:28 final size:28
Alignment explanation
Indices: 80865170--80865230 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
80865160 AGCCCAACGC
* *
80865170 ATTTTAGTAAAAACGAAT-CATTTCCGTT
1 ATTTTAG-AAAAAAGAATCCATTTCCGTA
* *
80865198 ATTTTTGAAAAAAGAGTCCATTTCCGTA
1 ATTTTAGAAAAAAGAATCCATTTCCGTA
80865226 ATTTT
1 ATTTT
80865231 GTTTGGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.41
Consensus pattern (28 bp):
ATTTTAGAAAAAAGAATCCATTTCCGTA
Found at i:80865770 original size:12 final size:12
Alignment explanation
Indices: 80865755--80865789 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
80865745 TATTATATTT
80865755 TTATTTTATAAA
1 TTATTTTATAAA
*
80865767 TTATTTTATAAT
1 TTATTTTATAAA
80865779 TTATATTTATA
1 TTAT-TTTATA
80865790 TTTTTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATTTTATAAA
Found at i:80865792 original size:12 final size:13
Alignment explanation
Indices: 80865741--80865789 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
80865731 TTTTCTAAAT
80865741 TTTATA-TTAT-A
1 TTTATATTTATAA
*
80865752 TTTTTATTTTATAA
1 TTTATA-TTTATAA
*
80865766 ATTAT-TTTATAA
1 TTTATATTTATAA
80865778 TTTATATTTATA
1 TTTATATTTATA
80865790 TTTTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 5 0.17
12 11 0.37
13 10 0.33
14 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTATATTTATAA
Found at i:80865799 original size:20 final size:20
Alignment explanation
Indices: 80865726--80865800 Score: 59
Period size: 19 Copynumber: 3.8 Consensus size: 20
80865716 AAAGTCAAAG
80865726 TATAGTTTTCTAAATTT-TATAT
1 TATA-TTTT-TAAATTTATAT-T
* **
80865748 TATATTTTT-ATTTTATAAA
1 TATATTTTTAAATTTATATT
80865767 T-TA-TTTTATAATTTATATT
1 TATATTTTTA-AATTTATATT
80865786 TATATTTTTAAATTT
1 TATATTTTTAAATTT
80865801 TTTTTAAGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
17 4 0.10
18 2 0.05
19 13 0.31
20 10 0.24
21 9 0.21
22 4 0.10
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (20 bp):
TATATTTTTAAATTTATATT
Found at i:80865806 original size:32 final size:32
Alignment explanation
Indices: 80865739--80865804 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
80865729 AGTTTTCTAA
*
80865739 ATTTTAT-A-TTATATTTTTATTTTATAAATT
1 ATTTTATAATTTATATTTATATTTTATAAATT
80865769 ATTTTATAATTTATATTTATATTTT-TAAATT
1 ATTTTATAATTTATATTTATATTTTATAAATT
*
80865800 TTTTT
1 ATTTT
80865805 TAAGAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 7 0.22
31 11 0.34
32 14 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (32 bp):
ATTTTATAATTTATATTTATATTTTATAAATT
Found at i:80867434 original size:19 final size:20
Alignment explanation
Indices: 80867394--80867435 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
80867384 TATTATTAGA
*
80867394 TAAAAGTTTATATTAATTTT
1 TAAAAGATTATATTAATTTT
*
80867414 TAAAAGATTAT-TTATTTTT
1 TAAAAGATTATATTAATTTT
80867433 TAA
1 TAA
80867436 TTTTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TAAAAGATTATATTAATTTT
Found at i:80877225 original size:21 final size:21
Alignment explanation
Indices: 80877199--80877239 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80877189 AGACGAGCAA
* *
80877199 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
80877220 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
80877240 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:80883835 original size:9 final size:9
Alignment explanation
Indices: 80883787--80883838 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
80883777 CAATTTATTG
*
80883787 ATATATTAT
1 ATATATTTT
*
80883796 ATCTATTTT
1 ATATATTTT
80883805 AT-T-TTTT
1 ATATATTTT
*
80883812 ATATATTCT
1 ATATATTTT
*
80883821 AAATATTTT
1 ATATATTTT
80883830 ATATATTTT
1 ATATATTTT
80883839 TATTTCTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 6 0.17
8 2 0.06
9 27 0.77
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (9 bp):
ATATATTTT
Found at i:80884061 original size:15 final size:15
Alignment explanation
Indices: 80884038--80884067 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80884028 GCCTTGTTTC
*
80884038 AATATGTGAATCAAT
1 AATAAGTGAATCAAT
80884053 AATAAGTGAATCAAT
1 AATAAGTGAATCAAT
80884068 GAATGAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (15 bp):
AATAAGTGAATCAAT
Found at i:80887332 original size:49 final size:50
Alignment explanation
Indices: 80887205--80887387 Score: 139
Period size: 50 Copynumber: 3.7 Consensus size: 50
80887195 TAGGGTATAA
* * *
80887205 TGCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCATC-C--ATCAAG
1 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGCAAATC-AG
* * * * * * *
80887254 T--CAATGACATGTCCTAGACATGCTTTTACATTGACTATCG-AAATCAAG
1 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGACTATCGCAAATC-AG
* * *
80887302 -GCCGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCGCATATCCG
1 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGCAAATCAG
* *
80887351 TGCCGATGCCATATCCCAGACATGGTCTTACACTGAC
1 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGAC
80887388 ACATCTCGTA
Statistics
Matches: 105, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
46 3 0.03
47 27 0.26
48 7 0.07
49 31 0.30
50 36 0.34
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (50 bp):
TGCCGACGCCATGTCCCAGACATGGTCTTACACTGACTATCGCAAATCAG
Found at i:80887438 original size:46 final size:47
Alignment explanation
Indices: 80887310--80887568 Score: 196
Period size: 46 Copynumber: 5.5 Consensus size: 47
80887300 AGGCCGACGC
* *
80887310 CATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCGT-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCT--CATCT-CGTAGCCGATG
* * *
80887359 CCATATCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTAGCCGATG
**
80887405 CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCG-AGGTTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCGTA-GCCGATG
* * * * *
80887451 CATGTCCCAAACAT-GTCTGACACTAGCTCTCGTCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTA-GCCGATG
* * * * *
80887497 TCATGTCCCAGATATGGTCTTACACTGACTCTCATAAT-GTGGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTCGTAGCCGATG
* *
80887545 CATGTCTCAAACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
80887569 AGCACACAAA
Statistics
Matches: 169, Mismatches: 29, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.06
45 18 0.11
46 69 0.41
47 24 0.14
48 22 0.13
49 2 0.01
50 24 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTAGCCGATG
Found at i:80887517 original size:94 final size:92
Alignment explanation
Indices: 80887398--80887571 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
80887388 ACATCTCGTA
* * *
80887398 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGTTGATGCATGTCCCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTCT-CATAAT-GAGGTCGATGCATGTCCCAA
80887461 ACATGTCTGACACTAGCTCTCGTCTCAAT
64 ACATGTCTGACACTAGCTCTCGTCTCAAT
* * *
80887490 GCCGATGTCATGTCCCAGATATGGTCTTACACTGACTCTCATAATGTGGTCGATGCATGTCTCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTCTCATAATGAGGTCGATGCATGTCCCAA
*
80887555 ACATGTCTTACACTAGC
64 ACATGTCTGACACTAGC
80887572 ACACAAATAA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 49 0.69
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTCTCATAATGAGGTCGATGCATGTCCCAAAC
ATGTCTGACACTAGCTCTCGTCTCAAT
Found at i:80887563 original size:140 final size:140
Alignment explanation
Indices: 80887310--80887568 Score: 335
Period size: 140 Copynumber: 1.8 Consensus size: 140
80887300 AGGCCGACGC
* * **
80887310 CATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCGTGCCGATGCCATATCCCAGACATG
1 CATGTCCCAAACATGGTCTGACACTAGCTCTCG-ATATCAATGCCGATGCCATATCCCAGACATG
*
80887375 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
65 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCT
80887440 CGAGGTTGATG
130 CGAGGTTGATG
* * * *
80887451 CATGTCCCAAACAT-GTCTGACACTAGCTCTCG-TCTCAATGCCGATGTCATGTCCCAGATATGG
1 CATGTCCCAAACATGGTCTGACACTAGCTCTCGATATCAATGCCGATGCCATATCCCAGACATGG
* * * * *
80887514 TCTTACACTGACTC-TCATAATGTGGTCGATGCATGTCTCAAACATGTCTTACACT
66 TCTTACACTGACACATC-T--CGTAGCCGATGCATGTCCCAAACATGTCTTACACT
80887569 AGCACACAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
137 2 0.02
138 39 0.39
140 47 0.47
141 13 0.13
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAAACATGGTCTGACACTAGCTCTCGATATCAATGCCGATGCCATATCCCAGACATGG
TCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTC
GAGGTTGATG
Found at i:80893104 original size:24 final size:26
Alignment explanation
Indices: 80893051--80893104 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
80893041 GGGAAACATT
*
80893051 TATATTAATATTTTTAGTGTTTTTGA
1 TATATTAATATTTTTAATGTTTTTGA
80893077 TATATT-ATATTTTTTAAT-TTTTTG-
1 TATATTAATA-TTTTTAATGTTTTTGA
80893101 TATA
1 TATA
80893105 AAAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 4 0.15
25 9 0.35
26 13 0.50
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (26 bp):
TATATTAATATTTTTAATGTTTTTGA
Found at i:80897200 original size:30 final size:29
Alignment explanation
Indices: 80897158--80897217 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
80897148 TCCTTTTCTC
* * *
80897158 TTTTTTTAATAAATGGCCCAATATTTTTA
1 TTTTTTTAATAAATGACACAATATCTTTA
*
80897187 TTTTTTTGCATAAATGACACAATATCTTTA
1 TTTTTTT-AATAAATGACACAATATCTTTA
80897217 T
1 T
80897218 ACTTCTCCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.50
Consensus pattern (29 bp):
TTTTTTTAATAAATGACACAATATCTTTA
Found at i:80898037 original size:18 final size:17
Alignment explanation
Indices: 80898011--80898052 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 17
80898001 CTCCTCCTCA
*
80898011 TTTTCTTCTTCTTTTTC
1 TTTTATTCTTCTTTTTC
80898028 GTTTTATTCTTCTTTTTC
1 -TTTTATTCTTCTTTTTC
80898046 TTTTATT
1 TTTTATT
80898053 GCCCAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTTATTCTTCTTTTTC
Found at i:80898859 original size:15 final size:16
Alignment explanation
Indices: 80898838--80898873 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
80898828 AATTTTATTT
80898838 TAATAATAATTTTAAA
1 TAATAATAATTTTAAA
80898854 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
80898869 TAATA
1 TAATA
80898874 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:80904242 original size:14 final size:14
Alignment explanation
Indices: 80904223--80904261 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
80904213 CCAGAAAAGT
80904223 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
80904237 AAATCATTTTTCAG
1 AAATCATTTTCCAG
*
80904251 AAGTCATTTTC
1 AAATCATTTTC
80904262 AATGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:80920519 original size:124 final size:124
Alignment explanation
Indices: 80920239--80920696 Score: 636
Period size: 124 Copynumber: 3.7 Consensus size: 124
80920229 GGTCAAATAA
* * *
80920239 GAACTACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
*
80920304 CTGCTTAAAGCGTTTTTGACACCA-TTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCGTCTTCTC--AATTATTTTTTCAG
**
80920364 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGTCAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * * * *
80920429 ATGCTTGAAGCGTTTTTTACACCATTTTTTCAGAACCATTTTCTCAATTATTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCGTCTTCTCAATTATTTTTTCAG
* * *
80920488 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCATTTTTCAGTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
* * * *
80920553 CTGCTTAAAGCGTTTTTGA-ATCTATTTTTTTAGAGCCGTCTTCTCAA-AATTTTTTTCAG
66 CTGCTTAAAGCGTTTTTGACA-CCATTTTTTCAGAACCGTCTTCTCAATTA-TTTTTTCAG
* * * * *
80920612 GAATTACTGTAGAAAAAGAGCGTCCACATGGGAACTTTTTTCATTAATTTTGCTAACAGTGCATT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
*
80920677 CTGCTTGAAGCG-TTTTGACA
66 CTGCTTAAAGCGTTTTTGACA
80920697 TTATCGTTTC
Statistics
Matches: 297, Mismatches: 32, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
123 8 0.03
124 191 0.64
125 81 0.27
126 17 0.06
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (124 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATC
CTGCTTAAAGCGTTTTTGACACCATTTTTTCAGAACCGTCTTCTCAATTATTTTTTCAG
Found at i:80920750 original size:249 final size:249
Alignment explanation
Indices: 80920244--80920755 Score: 665
Period size: 249 Copynumber: 2.1 Consensus size: 249
80920234 AATAAGAACT
* * * *
80920244 ACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGCATCCTGCT
1 ACTGTAGAAAAAAAGCGTCCACGTGGGAGCATTTTTCAGTAATTTTGCTAACAATGCATCCTGCT
*
80920309 TAAAGCGTTTTTGACACCATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGGAACTACTGT
66 TAAAGCGTTTTTGACACCATTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAACTACTGT
* * **
80920374 AGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGTCAGTGCATCATGCTTGAAG
131 AGAAAAAGAGCGTCCACATGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCATCATGCTTGAAG
* ** * * * * *
80920439 CGTTTTTTACACCATTTTTTCAGAACCATTTTCTCAATTATTTTTTCAGGAACT
196 CGTTTTTGACACCATCGTTTCAGAACCATCTTCTCAATTAATTTATCAGAAACA
* *
80920493 ACTGTAGAAAAAGAGCGTCCACGTGGGAGCATTTTTCAGTAATTTTGCTGACAATGCATCCTGCT
1 ACTGTAGAAAAAAAGCGTCCACGTGGGAGCATTTTTCAGTAATTTTGCTAACAATGCATCCTGCT
* * * *
80920558 TAAAGCGTTTTTGA-ATCTATTTTTTTAGAGCCGTCTTCTCAAAA-T-TTTTTTCAGGAATTACT
66 TAAAGCGTTTTTGACA-CCA-TTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAACTACT
*
80920620 GTAGAAAAAGAGCGTCCACATGGGAACTTTTTTCATTAATTTTGCTAACAGTGCATTC-TGCTTG
129 GTAGAAAAAGAGCGTCCACATGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCA-TCATGCTTG
** * ** *
80920684 AAGCG-TTTTGACATTATCGTTTCATAACTGTCTTCTCAAAATTAATTTATCTGAAACA
193 AAGCGTTTTTGACACCATCGTTTCAGAACCATCTTCTC--AATTAATTTATCAGAAACA
*
80920742 AGTGTAGAAAAAAA
1 ACTGTAGAAAAAAA
80920756 ATAAAATCCT
Statistics
Matches: 226, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
247 23 0.10
248 78 0.35
249 104 0.46
250 21 0.09
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (249 bp):
ACTGTAGAAAAAAAGCGTCCACGTGGGAGCATTTTTCAGTAATTTTGCTAACAATGCATCCTGCT
TAAAGCGTTTTTGACACCATTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAACTACTGT
AGAAAAAGAGCGTCCACATGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCATCATGCTTGAAG
CGTTTTTGACACCATCGTTTCAGAACCATCTTCTCAATTAATTTATCAGAAACA
Found at i:80920856 original size:34 final size:33
Alignment explanation
Indices: 80920809--80920942 Score: 162
Period size: 34 Copynumber: 3.9 Consensus size: 33
80920799 CTAAACACAA
80920809 AATTATTTTAAAAACCCTAAACCCTAATTTAATT
1 AATT-TTTTAAAAACCCTAAACCCTAATTTAATT
*
80920843 AATTTTCTTAAAAACTCTAAACCCTAATTTAATT
1 AATTTT-TTAAAAACCCTAAACCCTAATTTAATT
* *
80920877 TATTTATTT-AAAACCCTTAAAACCTAATTTAATT
1 AATTT-TTTAAAAACCC-TAAACCCTAATTTAATT
* *
80920911 AATTTTTTAAAAAAACTCTAAACCTTAATTTA
1 AATTTTTT--AAAAACCCTAAACCCTAATTTA
80920943 TTTTTAAAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
33 11 0.13
34 56 0.65
35 13 0.15
36 6 0.07
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (33 bp):
AATTTTTTAAAAACCCTAAACCCTAATTTAATT
Found at i:80930087 original size:39 final size:39
Alignment explanation
Indices: 80930044--80930179 Score: 112
Period size: 39 Copynumber: 3.2 Consensus size: 39
80930034 TTTATTATTA
80930044 TTTTTTATATTATCATATACATAGTTTATGTTAAAATTG
1 TTTTTTATATTATCATATACATAGTTTATGTTAAAATTG
* * ** *
80930083 TTTTTTATTGTATATATGTTATGATTACTAATA-TCATTATTTTATTATTA
1 TTTTTTA---TAT-TA--TCAT-A-TAC--ATAGT--TTATGTTAAAATTG
80930133 TTTTTTATATTATCATATACATAGTTTATGTTAAAATTG
1 TTTTTTATATTATCATATACATAGTTTATGTTAAAATTG
80930172 TTTTTTAT
1 TTTTTTAT
80930180 TGTATATATG
Statistics
Matches: 74, Mismatches: 10, Indels: 26
0.67 0.09 0.24
Matches are distributed among these distances:
39 25 0.34
40 3 0.04
41 1 0.01
42 6 0.08
43 3 0.04
44 3 0.04
45 3 0.04
46 3 0.04
47 6 0.08
48 1 0.01
49 3 0.04
50 17 0.23
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (39 bp):
TTTTTTATATTATCATATACATAGTTTATGTTAAAATTG
Found at i:80930112 original size:89 final size:89
Alignment explanation
Indices: 80930019--80930197 Score: 358
Period size: 89 Copynumber: 2.0 Consensus size: 89
80930009 TGTATTTATG
80930019 TACTAATATCATTATTTTATTATTATTTTTTATATTATCATATACATAGTTTATGTTAAAATTGT
1 TACTAATATCATTATTTTATTATTATTTTTTATATTATCATATACATAGTTTATGTTAAAATTGT
80930084 TTTTTATTGTATATATGTTATGAT
66 TTTTTATTGTATATATGTTATGAT
80930108 TACTAATATCATTATTTTATTATTATTTTTTATATTATCATATACATAGTTTATGTTAAAATTGT
1 TACTAATATCATTATTTTATTATTATTTTTTATATTATCATATACATAGTTTATGTTAAAATTGT
80930173 TTTTTATTGTATATATGTTATGAT
66 TTTTTATTGTATATATGTTATGAT
80930197 T
1 T
80930198 TCAAGTTGTC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (89 bp):
TACTAATATCATTATTTTATTATTATTTTTTATATTATCATATACATAGTTTATGTTAAAATTGT
TTTTTATTGTATATATGTTATGAT
Found at i:80930218 original size:2 final size:2
Alignment explanation
Indices: 80930211--80930235 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80930201 AGTTGTCTTT
80930211 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80930236 TTCCTTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80930505 original size:25 final size:27
Alignment explanation
Indices: 80930477--80930533 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
80930467 ATTAGATTTT
*
80930477 ATTTTATATATGTA-TATT-ATTT-CAA
1 ATTTTA-ACATGTATTATTCATTTGCAA
*
80930502 ATTTTAGCATGTATTATTCATTTGCAA
1 ATTTTAACATGTATTATTCATTTGCAA
80930529 ATTTT
1 ATTTT
80930534 TCATATGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.19
25 10 0.37
26 4 0.15
27 8 0.30
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (27 bp):
ATTTTAACATGTATTATTCATTTGCAA
Found at i:80934733 original size:10 final size:10
Alignment explanation
Indices: 80934718--80934756 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
80934708 CATAAAAGAG
80934718 AAAATATAAT
1 AAAATATAAT
80934728 AAAATATAAT
1 AAAATATAAT
*
80934738 AAAATAGAAT
1 AAAATATAAT
80934748 GAAAATATA
1 -AAAATATA
80934757 CAAAAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 19 0.73
11 7 0.27
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (10 bp):
AAAATATAAT
Found at i:80934761 original size:20 final size:20
Alignment explanation
Indices: 80934718--80934761 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
80934708 CATAAAAGAG
* *
80934718 AAAATATAATAAAATATAAT
1 AAAATAGAATAAAATATAAC
80934738 AAAATAGAATGAAAATAT-AC
1 AAAATAGAAT-AAAATATAAC
80934758 AAAA
1 AAAA
80934762 GAAAATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAATAGAATAAAATATAAC
Found at i:80934767 original size:14 final size:14
Alignment explanation
Indices: 80934748--80934780 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80934738 AAAATAGAAT
80934748 GAAAATATACAA-AA
1 GAAAATA-ACAACAA
80934762 GAAAATAACAACAA
1 GAAAATAACAACAA
80934776 GAAAA
1 GAAAA
80934781 ATTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.73, C:0.09, G:0.09, T:0.09
Consensus pattern (14 bp):
GAAAATAACAACAA
Found at i:80937063 original size:52 final size:48
Alignment explanation
Indices: 80937044--80937246 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
80937034 TGACAAGTGG
* *
80937044 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80937090 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
80937142 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
80937188 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80937234 AAAGTGATAAGTG
1 AAAGTGATAAGTG
80937247 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:80937098 original size:98 final size:98
Alignment explanation
Indices: 80936978--80937246 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
80936968 TTTGAGTACT
*
80936978 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80937043 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
80937076 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80937141 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
80937174 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
80937239 GATAAGTG
65 GAAAAGTG
80937247 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:80937254 original size:37 final size:37
Alignment explanation
Indices: 80937210--80937355 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
80937200 GATAGCTTTA
*
80937210 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80937247 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
80937284 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
80937321 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80937356 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:80938686 original size:58 final size:58
Alignment explanation
Indices: 80938609--80938776 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
80938599 CATGTGAACA
80938609 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
80938668 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
80938724 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
80938775 TG
1 TG
80938777 ATTACGTGTA
Statistics
Matches: 104, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
49 38 0.37
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 51 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:80938718 original size:28 final size:28
Alignment explanation
Indices: 80938628--80938718 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
80938618 GTGATTCCGT
80938628 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
80938656 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
80938685 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
80938714 GTAAG
1 GTAAG
80938719 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:80938741 original size:49 final size:49
Alignment explanation
Indices: 80938669--80938811 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 49
80938659 AGTGATATGT
* *
80938669 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
80938718 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
80938767 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
80938812 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Done.