Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 247 of 320
Found at i:80942021 original size:52 final size:48
Alignment explanation
Indices: 80942002--80942204 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
80941992 TGACAAGTGG
* *
80942002 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80942048 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
80942100 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
80942146 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80942192 AAAGTGATAAGTG
1 AAAGTGATAAGTG
80942205 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:80942056 original size:98 final size:98
Alignment explanation
Indices: 80941936--80942204 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
80941926 TTTGAGTACT
*
80941936 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80942001 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
80942034 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80942099 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
80942132 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
80942197 GATAAGTG
65 GAAAAGTG
80942205 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:80942212 original size:37 final size:37
Alignment explanation
Indices: 80942168--80942313 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
80942158 GATAGCTTTA
*
80942168 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80942205 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
80942242 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
80942279 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80942314 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:80943181 original size:17 final size:16
Alignment explanation
Indices: 80943159--80943210 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
80943149 CATTGTGGCC
80943159 AGTGGGGTAATGGAGTT
1 AGTGGGGT-ATGGAGTT
*
80943176 AGTGGGG--TGG-TTT
1 AGTGGGGTATGGAGTT
80943189 AGTGGGGTGATGGAGTT
1 AGTGGGGT-ATGGAGTT
80943206 AGTGG
1 AGTGG
80943211 CAAGTAGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 9 0.31
14 3 0.10
16 3 0.10
17 14 0.48
ACGTcount: A:0.17, C:0.00, G:0.52, T:0.31
Consensus pattern (16 bp):
AGTGGGGTATGGAGTT
Found at i:80946855 original size:24 final size:24
Alignment explanation
Indices: 80946828--80946887 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
80946818 ACTAATCAGT
80946828 GTTTGAATGAAACAAGTAAACAGA
1 GTTTGAATGAAACAAGTAAACAGA
80946852 GTTTGAATGAAACAAGTAAACAGA
1 GTTTGAATGAAACAAGTAAACAGA
80946876 GTTT-AACTGAAA
1 GTTTGAA-TGAAA
80946888 GATTATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 2 0.06
24 33 0.94
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.23
Consensus pattern (24 bp):
GTTTGAATGAAACAAGTAAACAGA
Found at i:80947849 original size:12 final size:12
Alignment explanation
Indices: 80947832--80947857 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80947822 AAAATAGGGC
80947832 TTTAGCGGCGTT
1 TTTAGCGGCGTT
80947844 TTTAGCGGCGTT
1 TTTAGCGGCGTT
80947856 TT
1 TT
80947858 ATGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:80947931 original size:41 final size:41
Alignment explanation
Indices: 80947886--80948084 Score: 330
Period size: 41 Copynumber: 4.9 Consensus size: 41
80947876 AATTATACAT
80947886 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
* *
80947927 TAGCGG-GTTTTTGACAAAGCGTCGCT-AAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
*
80947966 TAGCGGCGTTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
* * *
80948007 TAGCGGCGTTTTTGTCAAAGCGTCGCTAAAAAATAGAGCAA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
80948048 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGA
1 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGA
80948085 TAACCCCTAA
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
39 19 0.13
40 35 0.24
41 90 0.62
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAACAGAGCAA
Found at i:80948147 original size:8 final size:8
Alignment explanation
Indices: 80948134--80948169 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
80948124 TAGTCTATAT
80948134 AACCCCTA
1 AACCCCTA
80948142 AACCCCTA
1 AACCCCTA
80948150 AACCCCTA
1 AACCCCTA
80948158 AACCCCTA
1 AACCCCTA
80948166 AACC
1 AACC
80948170 AAAAAAACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.39, C:0.50, G:0.00, T:0.11
Consensus pattern (8 bp):
AACCCCTA
Found at i:80949742 original size:7 final size:7
Alignment explanation
Indices: 80949730--80949775 Score: 83
Period size: 7 Copynumber: 6.6 Consensus size: 7
80949720 AATCTTTAAA
80949730 AAAATTG
1 AAAATTG
*
80949737 AAAATTA
1 AAAATTG
80949744 AAAATTG
1 AAAATTG
80949751 AAAATTG
1 AAAATTG
80949758 AAAATTG
1 AAAATTG
80949765 AAAATTG
1 AAAATTG
80949772 AAAA
1 AAAA
80949776 ATAAAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (7 bp):
AAAATTG
Found at i:80949748 original size:14 final size:14
Alignment explanation
Indices: 80949729--80949800 Score: 83
Period size: 14 Copynumber: 5.0 Consensus size: 14
80949719 AAATCTTTAA
80949729 AAAAATTGAAAATT
1 AAAAATTGAAAATT
80949743 AAAAATTGAAAATT
1 AAAAATTGAAAATT
*
80949757 GAAAATTGAAAATT
1 AAAAATTGAAAATT
**
80949771 GAAAAATAAAAAAATT
1 -AAAAAT-TGAAAATT
80949787 AAAAACTT-AAAATT
1 AAAAA-TTGAAAATT
80949801 TTAATATTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
14 33 0.66
15 10 0.20
16 7 0.14
ACGTcount: A:0.65, C:0.01, G:0.07, T:0.26
Consensus pattern (14 bp):
AAAAATTGAAAATT
Found at i:80949790 original size:7 final size:7
Alignment explanation
Indices: 80949729--80949798 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
80949719 AAATCTTTAA
80949729 AAAAATT
1 AAAAATT
*
80949736 GAAAATT
1 AAAAATT
80949743 AAAAATT
1 AAAAATT
*
80949750 GAAAATT
1 AAAAATT
*
80949757 GAAAATT
1 AAAAATT
*
80949764 GAAAATT
1 AAAAATT
*
80949771 GAAAAATAA
1 -AAAAAT-T
80949780 AAAAATT
1 AAAAATT
80949787 AAAAACTT
1 AAAAA-TT
80949795 AAAA
1 AAAA
80949799 TTTTAATATT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
7 37 0.69
8 17 0.31
ACGTcount: A:0.67, C:0.01, G:0.07, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:80949869 original size:16 final size:18
Alignment explanation
Indices: 80949850--80949884 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
80949840 ATCAATATTT
80949850 AAAATTT-AAAAAA-ATA
1 AAAATTTCAAAAAACATA
80949866 AAAATTTCAAAAAACATA
1 AAAATTTCAAAAAACATA
80949884 A
1 A
80949885 TCTCAGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 6 0.35
18 4 0.24
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATTTCAAAAAACATA
Found at i:80950020 original size:40 final size:41
Alignment explanation
Indices: 80949938--80950022 Score: 109
Period size: 41 Copynumber: 2.1 Consensus size: 41
80949928 ACAAAAAAAT
* ** *
80949938 AAAATTGAGCTATTGTGGCGTTTTTATTAAAAACGCCACAA
1 AAAATTGAGATACAGTGGCGTTTTTAGTAAAAACGCCACAA
* *
80949979 AAAATTGAGATACAGTGGCGTTTTT-GTAAAAATGCCGCAA
1 AAAATTGAGATACAGTGGCGTTTTTAGTAAAAACGCCACAA
80950019 AAAA
1 AAAA
80950023 CTTTACATTG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
40 16 0.42
41 22 0.58
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (41 bp):
AAAATTGAGATACAGTGGCGTTTTTAGTAAAAACGCCACAA
Found at i:80955123 original size:42 final size:39
Alignment explanation
Indices: 80955077--80955215 Score: 145
Period size: 42 Copynumber: 3.4 Consensus size: 39
80955067 AATCTTGGTT
80955077 TTTAGTGGCGTTTTATAAAAAGCGCCGCTAAAGACAGGGACC
1 TTTAGTGGCGTTTT-TAAAAA-CGCCGCTAAAGACA-GGACC
* * *
80955119 TTTAGCGGCGTTTTCAAAAACAG-CGCTAAAGACCAGGACT
1 TTTAGTGGCGTTTTTAAAAAC-GCCGCTAAAGA-CAGGACC
* * *
80955159 TTTAGTGGCGCTTTTTAAAAAACGCCGCTAAAAGTCATGATC
1 TTTAGTGGCG-TTTTT-AAAAACGCCGCT-AAAGACAGGACC
80955201 TTTAGTGGCGTTTTT
1 TTTAGTGGCGTTTTT
80955216 TTCAAACAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
40 23 0.28
41 18 0.22
42 37 0.45
43 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (39 bp):
TTTAGTGGCGTTTTTAAAAACGCCGCTAAAGACAGGACC
Found at i:80955216 original size:42 final size:42
Alignment explanation
Indices: 80955042--80955234 Score: 132
Period size: 42 Copynumber: 4.6 Consensus size: 42
80955032 TACCTTTAAC
* * * * *
80955042 GGCGTTTTTAAAAAAATGTCGCTAAAA-TCTTGG-TTTTTAGT
1 GGCGTTTTTTAAAAAACGCCGCTAAAAGTC-AGGATCTTTAGT
* * * * *
80955083 GGCGTTTTATAAAAAGCGCCGCT-AAAGACAGGGACCTTTAGC
1 GGCGTTTTTTAAAAAACGCCGCTAAAAGTCA-GGATCTTTAGT
* *
80955125 GGCG--TTTTCAAAAACAG-CGCT-AAAGACCAGGA-CTTTTAGT
1 GGCGTTTTTTAAAAAAC-GCCGCTAAAAG-TCAGGATC-TTTAGT
* *
80955165 GGCGCTTTTTAAAAAACGCCGCTAAAAGTCATGATCTTTAGT
1 GGCGTTTTTTAAAAAACGCCGCTAAAAGTCAGGATCTTTAGT
80955207 GGCGTTTTTTTCAAACAAACGCCGCTAA
1 GGCG-TTTTTT-AAA-AAACGCCGCTAA
80955235 TTTTAGCAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
39 1 0.01
40 31 0.26
41 25 0.21
42 37 0.31
43 10 0.08
44 3 0.03
45 12 0.10
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (42 bp):
GGCGTTTTTTAAAAAACGCCGCTAAAAGTCAGGATCTTTAGT
Found at i:80957676 original size:24 final size:26
Alignment explanation
Indices: 80957624--80957683 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 26
80957614 CAGTTCGTAT
80957624 GAGCTTACTGATATATCAGCTCATAA
1 GAGCTTACTGATATATCAGCTCATAA
* * *
80957650 GAGCTTACT-AT-TTTCAGCTCTTCA
1 GAGCTTACTGATATATCAGCTCATAA
80957674 GAGCTTACTG
1 GAGCTTACTG
80957684 TTTCTAGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.63
25 2 0.07
26 9 0.30
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (26 bp):
GAGCTTACTGATATATCAGCTCATAA
Found at i:80959206 original size:17 final size:17
Alignment explanation
Indices: 80959165--80959209 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
80959155 ATTTATAAAT
80959165 TGATTGAAT-T-TG-AA
1 TGATTGAATGTATGAAA
*
80959179 TGA-TGATTGTATGAAA
1 TGATTGAATGTATGAAA
80959195 TGATTGAATGTATGA
1 TGATTGAATGTATGA
80959210 TACAAGTACG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 4 0.16
14 4 0.16
15 2 0.08
16 5 0.20
17 10 0.40
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (17 bp):
TGATTGAATGTATGAAA
Found at i:80967284 original size:19 final size:20
Alignment explanation
Indices: 80967247--80967284 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80967237 TTTTAGTTTA
* *
80967247 TTTTAAATACTATTCAATTT
1 TTTTAAAAAATATTCAATTT
80967267 TTTTAAAAAATATT-AATT
1 TTTTAAAAAATATTCAATT
80967285 GTATAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTAAAAAATATTCAATTT
Found at i:80967336 original size:3 final size:3
Alignment explanation
Indices: 80967314--80967419 Score: 55
Period size: 3 Copynumber: 35.3 Consensus size: 3
80967304 TGTAACATTC
*
80967314 ATT A-T ATT A-T ATT A-T ATT ATT ATT ATT ATT ATTT ATTT ATAA ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT A-TT AT-T ATT
* * *
80967359 ACAT ATT ATC A-T ATT -TT ATT ATAT ATAT AAT ATT ATT A-T ATT -TT
1 A-TT ATT ATT ATT ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT
*
80967403 TTT ATT ATGT ATT ATT A
1 ATT ATT AT-T ATT ATT A
80967420 CTCAATGATT
Statistics
Matches: 82, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
2 13 0.16
3 49 0.60
4 20 0.24
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:80967401 original size:27 final size:27
Alignment explanation
Indices: 80967314--80967407 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
80967304 TGTAACATTC
*
80967314 ATTATATTATATTATAT-TAT--TATT
1 ATTATATTTTATTATATATATAATATT
*
80967338 ATTAT-TATTTATT-TATAAATTACATATT
1 ATTATAT-TTTATTATATATA-TA-ATATT
*
80967366 ATCATATTTTATTATATATATAATATT
1 ATTATATTTTATTATATATATAATATT
*
80967393 ATTATATTTTTTTAT
1 ATTATATTTTATTAT
80967408 TATGTATTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
23 4 0.07
24 11 0.20
25 1 0.02
27 18 0.32
28 16 0.29
29 6 0.11
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTATATTTTATTATATATATAATATT
Found at i:80967532 original size:17 final size:17
Alignment explanation
Indices: 80967507--80967543 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
80967497 TTCATATTTC
*
80967507 ATTATATTTTATTACAT
1 ATTACATTTTATTACAT
*
80967524 ATTACATTTTATTATAT
1 ATTACATTTTATTACAT
80967541 ATT
1 ATT
80967544 TTTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTACATTTTATTACAT
Found at i:80967543 original size:39 final size:38
Alignment explanation
Indices: 80967508--80967584 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
80967498 TCATATTTCA
* *
80967508 TTATATTTTATTA-CATAT-TACATTTTATTATATATTT
1 TTATATTAT-TTATCATATGTACATATTATTATATATTT
*
80967545 TTATATTATTTATCATATGGTATATATTATTATATATTT
1 TTATATTATTTATCATAT-GTACATATTATTATATATTT
80967584 T
1 T
80967585 GGTTATAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 3 0.09
37 13 0.38
39 18 0.53
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (38 bp):
TTATATTATTTATCATATGTACATATTATTATATATTT
Found at i:80973917 original size:4 final size:4
Alignment explanation
Indices: 80973908--80973988 Score: 72
Period size: 4 Copynumber: 19.8 Consensus size: 4
80973898 AGTAAGTTAA
* *** * *
80973908 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG AGTT ATAG AGAG CAAACG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G
**
80973958 TGAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
80973989 TAGAAAAGGG
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
4 57 0.93
5 3 0.05
6 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.26, T:0.06
Consensus pattern (4 bp):
AAAG
Found at i:80981217 original size:8 final size:8
Alignment explanation
Indices: 80981199--80981238 Score: 62
Period size: 8 Copynumber: 4.8 Consensus size: 8
80981189 TTATTTCAAA
80981199 AAAAAAGAG
1 AAAAAA-AG
80981208 AAAAAAAG
1 AAAAAAAG
80981216 AAAAAAAG
1 AAAAAAAG
80981224 AAAAAAAAG
1 -AAAAAAAG
80981233 AAAAAA
1 AAAAAA
80981239 TGGAGAGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 16 0.53
9 14 0.47
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:80981221 original size:17 final size:17
Alignment explanation
Indices: 80981198--80981238 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
80981188 TTTATTTCAA
80981198 AAAAAAAGAGAAAAAAAG
1 AAAAAAAGA-AAAAAAAG
80981216 AAAAAAAGAAAAAAAAG
1 AAAAAAAGAAAAAAAAG
80981233 AAAAAA
1 AAAAAA
80981239 TGGAGAGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAAAAG
Found at i:80982306 original size:87 final size:87
Alignment explanation
Indices: 80982198--80982410 Score: 318
Period size: 87 Copynumber: 2.4 Consensus size: 87
80982188 AAAGACAACA
* *
80982198 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGGTTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
80982263 TACATTCAAGCAAATCTAAGAT
66 TACATTAAAGCAAATCTAAGAT
* * *
80982285 GATTTGGCGTCTCTATATTGGCAGGGAGTAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
80982350 TACGTTAAAGCAAATCTAAGAT
66 TACATTAAAGCAAATCTAAGAT
* * * * *
80982372 GATTTAGTGTCTCTGTATTGACAGAGAGCAAATCGAAGA
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGA
80982411 TAACAGATTT
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 112 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (87 bp):
GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACATTAAAGCAAATCTAAGAT
Found at i:80982403 original size:40 final size:41
Alignment explanation
Indices: 80982358--80982454 Score: 115
Period size: 44 Copynumber: 2.3 Consensus size: 41
80982348 TTTACGTTAA
* **
80982358 AGCAAATCTAAGAT-GATTTAGTGTCTCTGTATTGACAGAG
1 AGCAAATCGAAGATAGATTTAGCATCTCTGTATTGACAGAG
*
80982398 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAG
1 AGCAAATCGAAGAT---AGATTTAGCATCTCTGTATTGACAGAG
*
80982442 AGCAGATCGAAGA
1 AGCAAATCGAAGA
80982455 CATAGCTGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 13 0.27
44 35 0.73
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (41 bp):
AGCAAATCGAAGATAGATTTAGCATCTCTGTATTGACAGAG
Found at i:80982432 original size:44 final size:44
Alignment explanation
Indices: 80982381--80982979 Score: 367
Period size: 44 Copynumber: 13.7 Consensus size: 44
80982371 TGATTTAGTG
* *
80982381 TCTCTGTATTGACAGAGAGCAAATCGAAGATAACAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* * * *
80982425 TCTCTGTATTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTT
1 TCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGGC-A
* * * * * * *
80982472 TCACGTGT-TT-AC-GTTAAAGCAAATCTAAGAT----GATTTCGCG
1 TCTC-TGTATTGGCAG--AGAGCAGATCGAAGATAACAGATTTGGCA
* ** * *
80982512 TTTCTGTATTGGTGGAGAGCAGATCAAAGATACCAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* *
80982556 TCTCTGTATTGGTAGAGAGCAGATCAAAGATAACAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
** *
80982600 TCTCTGTATTGGCAGAGAGCAGATCGAAGACATGGCTGATTTGGC-
1 TCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGGCA
* * ** * * *
80982645 TTTCAAGTGTTTTCGTTA-A-AGCAAATCTAAGAT----GATTTGGCG
1 TCTC---TGTATT-GGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* ** * *
80982687 TTTCTGTATTGGTGGTGAGCAGATCGAAGATACCAGATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* * *
80982731 TCTCTGTATTGGCAGAAAGCATATCGAAGATAACAGATTTGGTA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
* * * *** *
80982775 TCTCTGTATTAGTAGAGAGTAGATCGAAGACATAGTTGATTTGGCTT
1 TCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGGC-A
* * * * * *
80982822 TCACGTGT-TT-AC-GTTAAAGCAAATCTAAGAT----GATTTGGCG
1 TCTC-TGTATTGGCAG--AGAGCAGATCGAAGATAACAGATTTGGCA
* * *
80982862 TCTCTGTATTGGCGGAGAGCAGATCGAAGATACCAAATTTGGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
** *
80982906 TCTCTGTATTGGCAGAGAGCAGATTAAAGATAACAGATTTAGCA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
*
80982950 TCTCTGTATTGGCAGAGAGTAGATCGAAGA
1 TCTCTGTATTGGCAGAGAGCAGATCGAAGA
80982980 CATAGCTGAT
Statistics
Matches: 434, Mismatches: 82, Indels: 78
0.73 0.14 0.13
Matches are distributed among these distances:
38 2 0.00
39 11 0.03
40 47 0.11
41 24 0.06
42 6 0.01
44 243 0.56
45 11 0.03
46 35 0.08
47 41 0.09
48 12 0.03
49 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (44 bp):
TCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCA
Found at i:80982454 original size:131 final size:131
Alignment explanation
Indices: 80982285--80982585 Score: 449
Period size: 131 Copynumber: 2.3 Consensus size: 131
80982275 AATCTAAGAT
* * * * *
80982285 GATTTGGCGTCTCTATATTGGCAGGGAGTAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* *
80982350 TACGTTAAAGCAAATCTAAGATGATTTAGTGTCTCTGTATTGACAGAGAGCAAATCGAAGATAAC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGACAGAGAGCAAATCAAAGATAAC
80982415 A
131 A
*
80982416 GATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* * *** * *
80982481 TACGTTAAAGCAAATCTAAGATGATTTCGCGTTTCTGTATTGGTGGAGAGCAGATCAAAGATACC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGACAGAGAGCAAATCAAAGATAAC
80982546 A
131 A
* *
80982547 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCAAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
80982586 TAACAGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 152 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (131 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGACAGAGAGCAAATCAAAGATAAC
A
Found at i:80982672 original size:175 final size:175
Alignment explanation
Indices: 80982381--80983112 Score: 1099
Period size: 175 Copynumber: 4.2 Consensus size: 175
80982371 TGATTTAGTG
* * * *
80982381 TCTCTGTATTGACAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAGAGCA
1 TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
*
80982446 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTCGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* *
80982511 GTTTCTGTATTGGTGGAGAGCAGATCAAAGATACCAGATTTGGCA
131 GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
*
80982556 TCTCTGTATTGGTAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
1 TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
* * *
80982621 GATCGAAGACATGGCTGATTTGGCTTTCAAGTGTTTTCGTTAAAGCAAATCTAAGATGATTTGGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* * * *
80982686 GTTTCTGTATTGGTGGTGAGCAGATCGAAGATACCAGATTTGGCA
131 GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
* * * * * * *
80982731 TCTCTGTATTGGCAGAAAGCATATCGAAGATAACAGATTTGGTATCTCTGTATTAGTAGAGAGTA
1 TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
*
80982796 GATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* *
80982861 GTCTCTGTATTGGCGGAGAGCAGATCGAAGATACCAAATTTGGCA
131 GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
* * *
80982906 TCTCTGTATTGGCAGAGAGCAGATTAAAGATAACAGATTTAGCATCTCTGTATTGGCAGAGAGTA
1 TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
* * * *
80982971 GATCGAAGACATAGCTGATTTGGCTTTTACGTGTTTACATTGAAGTAAATCTAAGATGATTTGGC
66 GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
* *
80983036 GTCTCTGTATTGGCGGAGAGCAGATCGAAA-ATAGCAGATTTGGCG
131 GTCTCTGTATTGGCGGAGAGCAGATC-AAAGATACCAGATTTGGCA
* * *
80983081 TCTCTGCT-TTGTCAGGGAGTAGATCAAAGATA
1 TCTCTG-TATTGGCAGAGAGCAGATCAAAGATA
80983113 TCAACATAGA
Statistics
Matches: 507, Mismatches: 48, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
175 504 0.99
176 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (175 bp):
TCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGGCAGAGAGCA
GATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGC
GTCTCTGTATTGGCGGAGAGCAGATCAAAGATACCAGATTTGGCA
Found at i:80982859 original size:306 final size:302
Alignment explanation
Indices: 80982285--80982929 Score: 723
Period size: 306 Copynumber: 2.1 Consensus size: 302
80982275 AATCTAAGAT
* * * * * *
80982285 GATTTGGCGTCTCTATATTGGCAGGGAGTAGATCGAAGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGTT
*
80982350 TACGTTAAAGCAAATCTAAGATGATTTAGTGTCTCTGTATTGACAGAGAGCAAATCGAAGATAAC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAAC
* * * *
80982415 AGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
131 AGATTTGGCATCTCTGTATTGACAGAAAGCAGATCGAAGA-ATAACAGATTTGGCTATCACGTGT
* * * *
80982480 TTACGTTAAAGCAAATCTAAGATGATTTCGCGTTTCTGTATTGGTGGAGAGCAGATCAAAGATAC
195 TTACGTTAAAGCAAATCGAAGATGATTTCGCGTTTCTGTATTCGTGGAAAGCAAATCAAAGAT--
*
80982545 CAGATTTGGCATCTCTGTATTGGTAGAGAGCAGATCAAAGATAACA
258 -AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACA
*
80982591 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATGGCTGATTTGGCTTTCAAGTGTT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGTT
* * * *** * * *
80982656 TTCGTTAAAGCAAATCTAAGATGATTTGGCGTTTCTGTATTGGTGGTGAGCAGATCGAAGATACC
66 TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAAC
* * *
80982721 AGATTTGGCATCTCTGTATTGGCAGAAAGCATATCGAAG-ATAACAGATTTGG-TATCTC-TGTA
131 AGATTTGGCATCTCTGTATTGACAGAAAGCAGATCGAAGAATAACAGATTTGGCTATCACGTGT-
* * * *
80982783 TTA-G-TAGAGAGTAGATCGAAGACATAGTTGATTTGGC-TTTCACGTGT-TTACGT-TAAAGCA
195 TTACGTTA-A-AGCAAATCGAAG----A--TGATTTCGCGTTT--C-TGTATT-CGTGGAAAGCA
* * * * *
80982843 AATCTAAGAT-GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATACCA
248 AATCAAAGATAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACA
*
80982897 AATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
80982930 TAAAGATAAC
Statistics
Matches: 287, Mismatches: 39, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
301 2 0.01
302 5 0.02
303 16 0.06
304 11 0.04
306 220 0.77
307 1 0.00
308 3 0.01
309 8 0.03
310 16 0.06
311 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (302 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAAGTGTT
TACGTTAAAGCAAATCTAAGATGATTTAGCGTCTCTGTATTGACAGAGAGCAAATCGAAGATAAC
AGATTTGGCATCTCTGTATTGACAGAAAGCAGATCGAAGAATAACAGATTTGGCTATCACGTGTT
TACGTTAAAGCAAATCGAAGATGATTTCGCGTTTCTGTATTCGTGGAAAGCAAATCAAAGATAGA
TTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACA
Found at i:80984890 original size:27 final size:25
Alignment explanation
Indices: 80984860--80984919 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
80984850 AAATTACATG
80984860 TTATCATATTTTATTATATATATAATA
1 TTATCATATTTT-TTAT-TATATAATA
* * *
80984887 TTATTATATTTTTTATTATGTATTA
1 TTATCATATTTTTTATTATATAATA
80984912 TTACTCAT
1 TTA-TCAT
80984920 TGATTGTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 10 0.36
26 7 0.25
27 11 0.39
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (25 bp):
TTATCATATTTTTTATTATATAATA
Found at i:80985025 original size:17 final size:17
Alignment explanation
Indices: 80985000--80985036 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
80984990 TTCATATTTC
*
80985000 ATTATATTTTATTACAT
1 ATTACATTTTATTACAT
*
80985017 ATTACATTTTATTATAT
1 ATTACATTTTATTACAT
80985034 ATT
1 ATT
80985037 TTTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTACATTTTATTACAT
Found at i:80988164 original size:3 final size:3
Alignment explanation
Indices: 80988143--80988212 Score: 68
Period size: 3 Copynumber: 23.3 Consensus size: 3
80988133 CTCTTCTGGG
* * * * * * *
80988143 TCA TCT TCA TCA ACA TCA TCA TCA TCA TCA CCA CCA CCA CCA TCA TCC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
*
80988191 TCA TCG TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA T
80988213 TGACTTGGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.30, C:0.40, G:0.01, T:0.29
Consensus pattern (3 bp):
TCA
Found at i:80996717 original size:26 final size:26
Alignment explanation
Indices: 80996688--80996769 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
80996678 TGGTACAAAT
80996688 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80996714 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80996740 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80996766 TGAT
1 TGAT
80996770 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81000712 original size:13 final size:13
Alignment explanation
Indices: 81000694--81000718 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81000684 TTTAGTAGTT
81000694 TTTAGGATAAAGG
1 TTTAGGATAAAGG
81000707 TTTAGGATAAAG
1 TTTAGGATAAAG
81000719 ATTATTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (13 bp):
TTTAGGATAAAGG
Found at i:81006324 original size:22 final size:21
Alignment explanation
Indices: 81006289--81006364 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
81006279 AAAAGGTATC
* *
81006289 TACAAATTAAATCTCAAAGAT
1 TACAAATCATATCTCAAAGAT
*
81006310 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCAAAGAT
* *
81006333 TGCATATCATATCT--AAGAT
1 TACAAATCATATCTCAAAGAT
*
81006352 TGC-AATCATATCT
1 TACAAATCATATCT
81006365 AAGATTGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
18 9 0.19
19 8 0.17
21 4 0.09
22 17 0.36
23 9 0.19
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCAAAGAT
Found at i:81006381 original size:35 final size:37
Alignment explanation
Indices: 81006318--81006396 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
81006308 ATTACAAAAT
81006318 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
81006354 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
81006389 CATATCAT
1 CATATCAT
81006397 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:81006394 original size:14 final size:15
Alignment explanation
Indices: 81006339--81006394 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
81006329 AGATTGCATA
81006339 TCATATCTAAGATTG
1 TCATATCTAAGATTG
81006354 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
81006372 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
81006389 -CATATC
1 TCATATC
81006395 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:81006404 original size:17 final size:19
Alignment explanation
Indices: 81006325--81006396 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
81006315 AATCATATCT
81006325 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
81006344 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
81006362 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
81006379 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
81006397 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:81006552 original size:21 final size:20
Alignment explanation
Indices: 81006515--81006553 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
81006505 TTGGACTTCG
**
81006515 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
81006535 TTTTATTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
81006554 TCTGGGCCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:81008407 original size:30 final size:30
Alignment explanation
Indices: 81008371--81008431 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
81008361 AAGTTTTCAG
* *
81008371 GATCCACACGGGTAGGCCACACACTCATGT
1 GATCCACACGGGCAGGCCACACACCCATGT
*
81008401 GATCCACACGGGCAGGCCACACGCCCATGT
1 GATCCACACGGGCAGGCCACACACCCATGT
81008431 G
1 G
81008432 CCATCCCGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.36, G:0.26, T:0.13
Consensus pattern (30 bp):
GATCCACACGGGCAGGCCACACACCCATGT
Found at i:81011177 original size:23 final size:23
Alignment explanation
Indices: 81011147--81011191 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
81011137 TAGTGTCCGT
81011147 AAGTATTCTATGTAACAAGGGGA
1 AAGTATTCTATGTAACAAGGGGA
81011170 AAGTATTCTATGTAACAAGGGG
1 AAGTATTCTATGTAACAAGGGG
81011192 TTCAAGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.27
Consensus pattern (23 bp):
AAGTATTCTATGTAACAAGGGGA
Found at i:81019374 original size:2 final size:2
Alignment explanation
Indices: 81019367--81019411 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
81019357 AACCTGGTAA
81019367 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
81019409 AG A
1 AG A
81019412 TGTCAACTAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:81020196 original size:30 final size:31
Alignment explanation
Indices: 81020152--81020234 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 31
81020142 ATTATATATT
*
81020152 TTAAAAA-GATAAAAAATCATT-T-TTTAAAA
1 TTAAAAATTATAAAAAAT-ATTCTCTTTAAAA
81020181 TTAAAAATTATAAAAAATATTCTCTTTAAAA
1 TTAAAAATTATAAAAAATATTCTCTTTAAAA
81020212 TTCAAAAATTA-AAAAGAA-ATTCT
1 TT-AAAAATTATAAAA-AATATTCT
81020235 AAAATTTCGA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 10 0.21
30 10 0.21
31 18 0.38
32 10 0.21
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (31 bp):
TTAAAAATTATAAAAAATATTCTCTTTAAAA
Found at i:81021661 original size:16 final size:16
Alignment explanation
Indices: 81021642--81021681 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
81021632 CCAAATCAAA
81021642 AATAAAATAAAAAATT
1 AATAAAATAAAAAATT
* *
81021658 AATAAACTAGAAAATT
1 AATAAAATAAAAAATT
81021674 AATAAAAT
1 AATAAAAT
81021682 TCTAAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (16 bp):
AATAAAATAAAAAATT
Found at i:81023877 original size:24 final size:24
Alignment explanation
Indices: 81023850--81023898 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
81023840 GTATATACAT
81023850 AAGTAAATATAATCATCTTTAGTA
1 AAGTAAATATAATCATCTTTAGTA
*
81023874 AAGTAAATATAATCATTTTTAGTA
1 AAGTAAATATAATCATCTTTAGTA
81023898 A
1 A
81023899 TACCTATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (24 bp):
AAGTAAATATAATCATCTTTAGTA
Found at i:81025477 original size:56 final size:56
Alignment explanation
Indices: 81025380--81025488 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
81025370 ACCATGGCGT
* * * * *
81025380 CGATATATGTGTGCGAGTAAGACCATGTTTTATACATTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCATGTCTGAGACAGTGGCATCAATATGTGACTC
* * *
81025436 CGATATATGTGTGCGAGTAAGACCCTGTCTGGGATAGTGGCATCAATATGTGA
1 CGATATATGTGTGCGAGTAAGACCATGTCTGAGACAGTGGCATCAATATGTGA
81025489 TTACATGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCATGTCTGAGACAGTGGCATCAATATGTGACTC
Found at i:81026937 original size:67 final size:67
Alignment explanation
Indices: 81026829--81026965 Score: 265
Period size: 67 Copynumber: 2.0 Consensus size: 67
81026819 TAAATTGCAT
81026829 GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATGGGTATGT
1 GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATGGGTATGT
81026894 GG
66 GG
*
81026896 GTTATTTATATGAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATGGGTATGT
1 GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATGGGTATGT
81026961 GG
66 GG
81026963 GTT
1 GTT
81026966 TGATGGCTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (67 bp):
GTTATTTATATAAGGTATATTTGGTATATGCTTATTGTGTAAAGTAAAAATATGTATGGGTATGT
GG
Found at i:81030372 original size:25 final size:25
Alignment explanation
Indices: 81030326--81030373 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
81030316 ATTTAATCTT
* *
81030326 TTTATTTAATCTTTCCCTTTTTTTA
1 TTTATTTAATCTTTCACATTTTTTA
81030351 TTTATTTAAT-TTTCAACATTTTT
1 TTTATTTAATCTTTC-ACATTTTT
81030374 AATTCCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTATTTAATCTTTCACATTTTTTA
Found at i:81041865 original size:33 final size:33
Alignment explanation
Indices: 81041826--81041970 Score: 125
Period size: 33 Copynumber: 4.5 Consensus size: 33
81041816 AAGGGTGGTA
* *
81041826 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
1 TTGAAAAGGAAATGTACACTTTGTGTATACCAC
* * *
81041859 TTGAAAAGGAAAAGTACA-TTATATGTGTA-CAC
1 TTGAAAAGGAAATGTACACTT-TGTGTATACCAC
** * * *
81041891 TTGAAAAGGTTATGTACACTTTGTGTGTACAAA
1 TTGAAAAGGAAATGTACACTTTGTGTATACCAC
** *
81041924 TTGAAAAGGGTATGTACACTTCGTGTA-ACCAC
1 TTGAAAAGGAAATGTACACTTTGTGTATACCAC
* *
81041956 TTGAAAGGGGAATGT
1 TTGAAAAGGAAATGT
81041971 GCACCTCGGG
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
32 43 0.47
33 49 0.53
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (33 bp):
TTGAAAAGGAAATGTACACTTTGTGTATACCAC
Found at i:81043576 original size:50 final size:50
Alignment explanation
Indices: 81043518--81043675 Score: 145
Period size: 50 Copynumber: 3.3 Consensus size: 50
81043508 CCTATACCCT
81043518 TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCC
1 TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCC
* * * *
81043568 TAAAGTTGCGGTGGAG-CAGATTGAAGCTA-C--A---AATCCTATAC-CCC
1 TAAAGTTGCAGTGG-GTCGGATTGAATCTACCATAGTGAATCTTAT-CTCCC
* * * *
81043612 TGAAGTTGCAGTGGGTCGGATGGAAGT-TACCATAGTGGATCTTATCTTCC
1 TAAAGTTGCAGTGGGTCGGATTGAA-TCTACCATAGTGAATCTTATCTCCC
*
81043662 TGAAGTTGCAGTGG
1 TAAAGTTGCAGTGG
81043676 AGTAGGATGA
Statistics
Matches: 85, Mismatches: 12, Indels: 22
0.71 0.10 0.18
Matches are distributed among these distances:
43 1 0.01
44 31 0.36
45 2 0.02
47 2 0.02
49 2 0.02
50 46 0.54
51 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCC
Found at i:81043668 original size:94 final size:94
Alignment explanation
Indices: 81043504--81043721 Score: 323
Period size: 94 Copynumber: 2.3 Consensus size: 94
81043494 GTGAAACCAT
* * *
81043504 AAATCCTATACCCTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAATCTACCATAGTGAATCTTATCTCCCT
*
81043569 AAAGTTGCGGTGGAGCA-GATTGAAGCTAC
66 AAAGTTGCAGTGGAGCAGGA-TGAAGCTAC
* *
81043598 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGT-TACCATAGTGGATCTTATCTTCC
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAA-TCTACCATAGTGAATCTTATCTCCC
* *
81043662 TGAAGTTGCAGTGGAGTAGGATGAAGCTAC
65 TAAAGTTGCAGTGGAGCAGGATGAAGCTAC
*
81043692 AATTCCTATACCCCTGAAGTTGCAGTGGGT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGT
81043722 TGGAATGAAG
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 110 0.97
95 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (94 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAATCTACCATAGTGAATCTTATCTCCCT
AAAGTTGCAGTGGAGCAGGATGAAGCTAC
Found at i:81043730 original size:44 final size:43
Alignment explanation
Indices: 81043589--81043737 Score: 147
Period size: 44 Copynumber: 3.3 Consensus size: 43
81043579 TGGAGCAGAT
* *
81043589 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGA
1 TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTAGGA
* * *
81043632 TGGAAGTTACCATAGTGGATCTTAT-CTTCCTGAAGTTGCAGTGGAGTAGGA
1 T-GAAGCTA-CA-A-T---TCCTATAC-CCCTGAAGTTGCAGTGG-GTAGGA
*
81043683 TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTTGGAA
1 TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTAGG-A
81043727 TGAAGCTACAA
1 TGAAGCTACAA
81043738 CTATAAATCC
Statistics
Matches: 86, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
43 5 0.06
44 39 0.45
45 3 0.03
46 1 0.01
47 1 0.01
48 1 0.01
49 3 0.03
50 27 0.31
51 6 0.07
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
TGAAGCTACAATTCCTATACCCCTGAAGTTGCAGTGGGTAGGA
Found at i:81043760 original size:94 final size:93
Alignment explanation
Indices: 81043504--81043763 Score: 258
Period size: 94 Copynumber: 2.8 Consensus size: 93
81043494 GTGAAACCAT
* * * * * * **
81043504 AAATCCTATACCCTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGCTACAATAGTAAATCCCATCT-CCT
* *
81043569 AAAGTTGCGGTGGAGCAGATTGAAGCTAC
65 GAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * ** **
81043598 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGTTACCATAGTGGATCTTATCTTCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGCTACAATAGTAAATCCCATC-TCCT
*
81043663 GAAGTTGCAGTGGAGTAGGA-TGAAGCTAC
65 GAAGTTGCAGTGGAGCA-GATTGAAGCTAC
* *
81043692 AATTCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-GAAGCTACAACTA-TAAATCCCATAC-C
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCGG-ATGGAAGCTACAA-TAGTAAATCCCAT-CTC
81043754 CTTGAAGTTG
63 C-TGAAGTTG
81043764 TAATGGGTCA
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.01
94 133 0.93
95 8 0.06
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (93 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATGGAAGCTACAATAGTAAATCCCATCTCCTG
AAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:81043928 original size:238 final size:238
Alignment explanation
Indices: 81043502--81043956 Score: 595
Period size: 238 Copynumber: 1.9 Consensus size: 238
81043492 CAGTGAAACC
* * * * * **
81043502 ATAAATCCTATACCCTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAGTGAATCTTATCTCC
1 ATAAATCCCATACCCTTAAAGTTGCAATGGGTCAGATTAAATATACCATAGCAAATCTTATCTCC
* * * * * * *
81043567 CTAAAGTTGCGGTGGAGCAGATTGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGA
66 CTAAAGTTACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGATCAGA
* * * * * * *
81043632 TGGAAGTTACCATAGTGGATCTTATCTTCCTGAAGTTGCAGTGGAGTAGGATGAAGCTACAATTC
131 TGGAAGTTACCATAGTGAATCTTATCTCCCTGAAGTTGCAATGAAGTAAGACGAAGCTACAACTC
81043697 CTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAACT
196 CTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAACT
* * *
81043740 ATAAATCCCATACCCTTGAAGTTGTAATGGGTCAGATTAAATATGCCATAGCAAATCTTATCTCC
1 ATAAATCCCATACCCTTAAAGTTGCAATGGGTCAGATTAAATATACCATAGCAAATCTTATCTCC
* * * *
81043805 CTAAAGTTACAGTGGAGTAAAATGAAGCTACAACTTCTATATCCCTGAAGTTGCAGTAGATCAGA
66 CTAAAGTTACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGATCAGA
* * *** *
81043870 TTGAATTTATTGTAGTGAATCTTATCTCCCTGAAGTTGCAATGAAGTAAGACGAAGCTATAACTC
131 TGGAAGTTACCATAGTGAATCTTATCTCCCTGAAGTTGCAATGAAGTAAGACGAAGCTACAACTC
*
81043935 CTATATCCCTGAAGTTGCAGTG
196 CTATACCCCTGAAGTTGCAGTG
81043957 AAGTAAGATG
Statistics
Matches: 182, Mismatches: 35, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
238 182 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (238 bp):
ATAAATCCCATACCCTTAAAGTTGCAATGGGTCAGATTAAATATACCATAGCAAATCTTATCTCC
CTAAAGTTACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTAGATCAGA
TGGAAGTTACCATAGTGAATCTTATCTCCCTGAAGTTGCAATGAAGTAAGACGAAGCTACAACTC
CTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAACT
Found at i:81043959 original size:44 final size:44
Alignment explanation
Indices: 81043896--81044000 Score: 174
Period size: 44 Copynumber: 2.4 Consensus size: 44
81043886 GAATCTTATC
81043896 TCCCTGAAGTTGCAATGAAGTAAGACGAAGCTATAACTCCTATA
1 TCCCTGAAGTTGCAATGAAGTAAGACGAAGCTATAACTCCTATA
* *
81043940 TCCCTGAAGTTGCAGTGAAGTAAGATGAAGCTATAACTCCTATA
1 TCCCTGAAGTTGCAATGAAGTAAGACGAAGCTATAACTCCTATA
* *
81043984 GCCTTGAAGTTGCAATG
1 TCCCTGAAGTTGCAATG
81044001 GATCTGATTG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
TCCCTGAAGTTGCAATGAAGTAAGACGAAGCTATAACTCCTATA
Found at i:81044838 original size:16 final size:17
Alignment explanation
Indices: 81044812--81044844 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81044802 TTATTTTCTT
81044812 TTTATAAAAAAACAAGA
1 TTTATAAAAAAACAAGA
*
81044829 TTTA-AAAAAAAGAAGA
1 TTTATAAAAAAACAAGA
81044845 AGAAAACTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.67, C:0.03, G:0.09, T:0.21
Consensus pattern (17 bp):
TTTATAAAAAAACAAGA
Found at i:81047306 original size:24 final size:24
Alignment explanation
Indices: 81047271--81047446 Score: 201
Period size: 24 Copynumber: 7.0 Consensus size: 24
81047261 TGGCATTGTG
*
81047271 CTAAGTTG-AATAAGACCATGGCAT
1 CTAAG-TGAAATAAGTCCATGGCAT
*
81047295 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
81047319 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
* *
81047346 GCTAAGTGAAATAAGACCGTGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
81047371 CTAAGTGAAATAAGTCCATGGAAATAT
1 CTAAGTGAAATAAGTCCATGG---CAT
*
81047398 GCTAAGTGAAATAAGTCCATGACAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
81047423 CTAAGTGAAATAAGTCTATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
81047447 GGTGCTAAGT
Statistics
Matches: 133, Mismatches: 10, Indels: 18
0.83 0.06 0.11
Matches are distributed among these distances:
23 2 0.02
24 83 0.62
25 4 0.03
27 4 0.03
28 40 0.30
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:81047350 original size:76 final size:78
Alignment explanation
Indices: 81047260--81047446 Score: 235
Period size: 76 Copynumber: 2.4 Consensus size: 78
81047250 TATCTAGGAT
*
81047260 ATGGCATTGTGCTAAGTTG-AATAAGACCATGGCATCTAAGTGAAATAAGACCATGG-CAT-CTA
1 ATGGCAATGTGCTAAG-TGAAATAAGACCATGGCATCTAAGTGAAATAAGACCATGGACATGCTA
81047322 AGTGAAATAAGTCC
65 AGTGAAATAAGTCC
* * *
81047336 ATGGCAATGTGCTAAGTGAAATAAGACCGTGGCATCTAAGTGAAATAAGTCCATGGAAATATGCT
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGACCATGG--ACATGCT
81047401 AAGTGAAATAAGTCC
64 AAGTGAAATAAGTCC
* * *
81047416 ATGAC-A--T-CTAAGTGAAATAAGTCTATGGCAT
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCAT
81047447 GGTGCTAAGT
Statistics
Matches: 98, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
75 2 0.02
76 71 0.72
77 1 0.01
79 3 0.03
80 21 0.21
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.25
Consensus pattern (78 bp):
ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGACCATGGACATGCTAA
GTGAAATAAGTCC
Found at i:81047355 original size:52 final size:52
Alignment explanation
Indices: 81047295--81047458 Score: 258
Period size: 52 Copynumber: 3.2 Consensus size: 52
81047285 ACCATGGCAT
81047295 CTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAATGTG
1 CTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAATGTG
* * *
81047347 CTAAGTGAAATAAGACCGTGGCATCTAAGTGAAATAAGTCCATGGAAATATG
1 CTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAATGTG
* * *
81047399 CTAAGTGAAATAAGTCCATGACATCTAAGTGAAATAAGTCTATGGC-ATGGTG
1 CTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAAT-GTG
81047451 CTAAGTGA
1 CTAAGTGA
81047459 GAAATTTCCC
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
51 2 0.02
52 100 0.98
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (52 bp):
CTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAATGTG
Found at i:81047537 original size:51 final size:51
Alignment explanation
Indices: 81047482--81047679 Score: 301
Period size: 51 Copynumber: 3.9 Consensus size: 51
81047472 TGAACCTTAG
*
81047482 GAATAAAATAACTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* * *
81047533 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCTACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
*
81047584 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* *
81047635 GAATAAAATAGCTATGGTTACA-AAG-GTGGTACTATGTAAAGGCCA
1 GAATAAAATAGCTTTGG--ACACAAGTGTGGTACTATGTGAAGGCCA
81047680 TCGTGTATCT
Statistics
Matches: 136, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
51 130 0.96
52 3 0.02
53 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
Found at i:81050826 original size:42 final size:42
Alignment explanation
Indices: 81050767--81051013 Score: 298
Period size: 42 Copynumber: 5.8 Consensus size: 42
81050757 AGGGTTACTA
* * *
81050767 AGATTACGTGTGAGACCATATCTGGGGTATGGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * *
81050809 AGATTTCGTGTAAGACCATATCTAGGATATGGCATCAATATA
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * * *
81050851 AGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATACG
1 AGATTACGTGTAAGACCATA-TCTGGGATA-TGGCATCAATATG
* *
81050894 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATA
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
* * * * *
81050936 AGATTTCGTGTAAAACCATAGCTGGGCTATTGGCATCAATACG
1 AGATTACGTGTAAGACCATATCTGGGATA-TGGCATCAATATG
*
81050979 AGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTGGGATATGGCAT
81051014 TGGTACAATA
Statistics
Matches: 172, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
42 102 0.59
43 70 0.41
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCAATATG
Found at i:81050907 original size:85 final size:85
Alignment explanation
Indices: 81050765--81051013 Score: 385
Period size: 85 Copynumber: 2.9 Consensus size: 85
81050755 TTAGGGTTAC
* * * * * *
81050765 TAAGATTACGTGTGAGACCATA-TCTGGGGTA-TGGCATCGATATGAGATTTCGTGTAAGACCAT
1 TAAGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATACGAGATTACATGTAAGACCAT
*
81050828 ATCTAGGATATGGCATCAATA
65 ATCTGGGATATGGCATCAATA
81050849 TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
1 TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
81050914 TCTGGGATATGGCATCAATA
66 TCTGGGATATGGCATCAATA
* * *
81050934 TAAGATTTCGTGTAAAACCATAGCTGGGCTATTGGCATCAATACGAGATTACATGTAAGACCATA
1 TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
81050999 TCTGGGATATGGCAT
66 TCTGGGATATGGCAT
81051014 TGGTACAATA
Statistics
Matches: 153, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
84 26 0.17
85 127 0.83
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (85 bp):
TAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTACATGTAAGACCATA
TCTGGGATATGGCATCAATA
Found at i:81051012 original size:127 final size:127
Alignment explanation
Indices: 81050767--81051013 Score: 336
Period size: 127 Copynumber: 1.9 Consensus size: 127
81050757 AGGGTTACTA
* * * * * * *
81050767 AGATTACGTGTGAGACCATATCTGGGGTATGGCATCGATATGAGATTTCGTGTAAGACCATATCT
1 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
* * * *
81050832 AGGATATGGCATCAATATAAGATTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACG
66 AGGATATGGCATCAATACAAGATTACATGTAAGACCATAGTTGGGATATTGGCATCGATACG
81050894 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
1 AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
* * *
81050959 GGGCTATTGGCATCAATACGAGATTACATGTAAGACCATA-TCTGGGATA-TGGCAT
66 AGGATA-TGGCATCAATACAAGATTACATGTAAGACCATAGT-TGGGATATTGGCAT
81051014 TGGTACAATA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
127 69 0.66
128 35 0.34
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (127 bp):
AGATTACATGTAAGACCATATCTGGGATATGGCATCAATATAAGATTTCGTGTAAAACCATAGCT
AGGATATGGCATCAATACAAGATTACATGTAAGACCATAGTTGGGATATTGGCATCGATACG
Found at i:81053867 original size:21 final size:21
Alignment explanation
Indices: 81053843--81053888 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
81053833 TAATAAAATT
81053843 TATAAATAAAATG-TATAATAA
1 TATAAATAAAATGATA-AATAA
*
81053864 TATAAATAATATGATAAATAA
1 TATAAATAAAATGATAAATAA
81053885 TATA
1 TATA
81053889 TAAAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
TATAAATAAAATGATAAATAA
Found at i:81053872 original size:12 final size:11
Alignment explanation
Indices: 81053857--81053903 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
81053847 AATAAAATGT
81053857 ATAATAATATAA
1 ATAAT-ATATAA
81053869 ATAATATGATAA
1 ATAATAT-ATAA
81053881 ATAATATATAAAA
1 ATAATATAT--AA
81053894 ATAATATATA
1 ATAATATATA
81053904 TACAATTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.16
12 16 0.50
13 11 0.34
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
ATAATATATAA
Found at i:81055539 original size:44 final size:43
Alignment explanation
Indices: 81055480--81055621 Score: 176
Period size: 44 Copynumber: 3.2 Consensus size: 43
81055470 TATGGAGAAA
* * *
81055480 CCAAATCTGTCATCTTCGACCTGCCCACTGTCAATACAGAGACG
1 CCAAATCTGT-ATCTTCGATCTGCTCTCTGTCAATACAGAGACG
* * * *
81055524 CCAAATCTGCTATCTTCAATCTGCTCTTTATCAATATAGAGACG
1 CCAAATCTG-TATCTTCGATCTGCTCTCTGTCAATACAGAGACG
* *
81055568 CCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAAAGATG
1 CCAAATCTG-TATCTTCGATCTGCTCTCTGTCAATACAGAGACG
81055612 CCAAATCTGT
1 CCAAATCTGT
81055622 CACCTTTGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
43 1 0.01
44 81 0.98
45 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (43 bp):
CCAAATCTGTATCTTCGATCTGCTCTCTGTCAATACAGAGACG
Found at i:81055654 original size:23 final size:23
Alignment explanation
Indices: 81055610--81055654 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
81055600 AATACAAAGA
*
81055610 TGCCAAATCTGTCACCTTTGATT
1 TGCCAAATCTGTCACCTATGATT
*
81055633 TGCCAAATCTGTCAGCTATGAT
1 TGCCAAATCTGTCACCTATGAT
81055655 CTGTTCTCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (23 bp):
TGCCAAATCTGTCACCTATGATT
Found at i:81055682 original size:44 final size:44
Alignment explanation
Indices: 81055634--81055950 Score: 460
Period size: 44 Copynumber: 7.2 Consensus size: 44
81055624 CCTTTGATTT
* *
81055634 GCCAAATCTGTCAGCTAT-GATCTGTTCTCTGTCAATACAGAGAC
1 GCCAAATCTGTCATCT-TCGATCTGCTCTCTGTCAATACAGAGAC
*
81055678 GCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
* * *
81055722 GCCAAATCTGTCATTTTTGATCTGCTCAT-TGTCAATACAAAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTC-TCTGTCAATACAGAGAC
* * *
81055766 ACCAAATCTGTCATCTTTGATATGCTCTCTGTCAATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
*
81055810 GCCAAATCTGTCATCTTCGATCTGCTCTCTATCAATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
* *
81055854 GCCAAATCTATCATCTTCGATCTGCTCTCTGTCAATACAGGGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
* *
81055898 GCCAAATCTGTTATCTTCGGTCTGCTCTCTGAT-AATACAGAGAC
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTG-TCAATACAGAGAC
81055942 GCCAAATCT
1 GCCAAATCT
81055951 ACTATCGGTG
Statistics
Matches: 249, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
43 2 0.01
44 245 0.98
45 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAC
Found at i:81055762 original size:155 final size:155
Alignment explanation
Indices: 81055507--81055786 Score: 431
Period size: 155 Copynumber: 1.8 Consensus size: 155
81055497 GACCTGCCCA
* *
81055507 CTGTCAATACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTTTATCAATATAGAGACGCCAA
1 CTGTCAATACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTATCAATACAGAGACGCCAA
* **
81055572 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAAAGATGCCAAATCTGTCACCTTTGATTTGCC
66 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGACACCAAATCTGTCACCTTTGATTTGCC
81055637 AAATCTGTCAGCTATGATCTGTTCT
131 AAATCTGTCAGCTATGATCTGTTCT
*
81055662 CTGTCAATACAGAGACGCCAAATCTG-TCATCTT-AGATCTGCTCTCTGTCAATACAGAGACGCC
1 CTGTCAATACAGAGACGCCAAATCTGCT-ATCTTCA-ATCTGCTCTCTATCAATACAGAGACGCC
* * *
81055725 AAATCTGTCATTTTTGATCTGCTCAT-TGTCAATACAAAGACACCAAATCTGTCATCTTTGAT
64 AAATCTGTCATCTTCGATCTGCTC-TCTGTCAATACAAAGACACCAAATCTGTCACCTTTGAT
81055787 ATGCTCTCTG
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
154 2 0.02
155 110 0.97
156 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (155 bp):
CTGTCAATACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTATCAATACAGAGACGCCAA
ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGACACCAAATCTGTCACCTTTGATTTGCC
AAATCTGTCAGCTATGATCTGTTCT
Found at i:81055776 original size:111 final size:110
Alignment explanation
Indices: 81055554--81055778 Score: 240
Period size: 111 Copynumber: 2.0 Consensus size: 110
81055544 CTGCTCTTTA
* * * *
81055554 TCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAAAGATGCCAAATC
1 TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
* * * * *****
81055619 TGTCACCTTTGATTTGCCAAATCTGTCAGCTATGATCTGTTCTCTG
66 TGTCACCTTTGATCTGCC-AATCTGTCAACAAAGATCCCAAATCTG
*
81055665 TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAGAGACGCCAAATC
1 TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
**
81055730 TGTCATTTTTGATCTGCTC-AT-TGTCAATACAAAGA-CACCAAATCTG
66 TGTCACCTTTGATCTGC-CAATCTGTC-A-ACAAAGATC-CCAAATCTG
81055776 TCA
1 TCA
81055779 TCTTTGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
109 4 0.04
110 4 0.04
111 85 0.90
112 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (110 bp):
TCAATACAGAGACGCCAAATCTGTCATCTTAGATCTGCTCTCTGTCAATACAAAGACGCCAAATC
TGTCACCTTTGATCTGCCAATCTGTCAACAAAGATCCCAAATCTG
Found at i:81065084 original size:318 final size:318
Alignment explanation
Indices: 81064507--81065139 Score: 1160
Period size: 318 Copynumber: 2.0 Consensus size: 318
81064497 TAACTCGACC
* * *
81064507 GCGGAGTTACGACTTCGGTGATGATAAAGATATCGTCCAAGCATAGTCACCTTAGTTTTTAATCC
1 GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
81064572 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
66 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
*
81064637 CGGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
131 CAGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
**
81064702 CTCTTCATTGATAGTTGTATCCTCTTATATTGCATCTTCAAGTTGTCTTGGTCTTCCTCAATCTT
196 CTCTTCATTGATAGTTGTATCCTCTTATATTGCATCTTCAAGTCCTCTTGGTCTTCCTCAATCTT
*
81064767 CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTGTGAACGTCGACGTCTAAGACT
261 CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAACGTCGACGTCTAAGACT
81064825 GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
1 GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
*
81064890 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCTCTTGGAACTTCTTCTCCTAATACT
66 TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
81064955 CAGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
131 CAGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
*
81065020 CTCTTCATTGATAGTTGTATCCTCTTATATTGCGTCTTCAAGTCCT-TTCGGTCTTCCTCAATCT
196 CTCTTCATTGATAGTTGTATCCTCTTATATTGCATCTTCAAGTCCTCTT-GGTCTTCCTCAATCT
*
81065084 TCCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAATGTCGACGTCTAAG
260 TCCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAACGTCGACGTCTAAG
81065140 CTTAGTTACA
Statistics
Matches: 304, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
317 2 0.01
318 302 0.99
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (318 bp):
GCGGAGTTACGACTTCGGTAATGATAAAGAGATCGTCCAAGCACAGTCACCTTAGTTTTTAATCC
TTAATTCTCTTTCTTTAGGGCCTGATTATGCGTTTGCATCCCTTGGAACTTCTTCTCCTAATACT
CAGCTTTGGCTCTTTCTTCTTGAACCTCTTATTGCCACTGTTCTGAAGACTTCCCCAATCCAGCT
CTCTTCATTGATAGTTGTATCCTCTTATATTGCATCTTCAAGTCCTCTTGGTCTTCCTCAATCTT
CCTCTTTTCTTTCCTCTCTTTTTCGACCTCAATTCTATGAACGTCGACGTCTAAGACT
Found at i:81067900 original size:70 final size:66
Alignment explanation
Indices: 81067789--81067943 Score: 204
Period size: 70 Copynumber: 2.3 Consensus size: 66
81067779 ATGCATCATC
* * *
81067789 ATTTCATGCAGATATAACCATAGAAAACAATGATCATAACAATATAGATTACATAATACATACAT
1 ATTTCATGCAAATATAA-CATAGAAAACAATGATCACAACAATATAAATTACATAAT--AT--AT
*
81067854 AATAAT
61 AACAAT
81067860 ATTTCATGCAAATATAACATAGAAAACAATGAAT-ACAACAATATAAATTACATAATATATAACA
1 ATTTCATGCAAATATAACATAGAAAACAATG-ATCACAACAATATAAATTACATAATATATAACA
81067924 AT
65 AT
*
81067926 ATTTTATGCAAATATAAC
1 ATTTCATGCAAATATAAC
81067944 TTAAAAAAAC
Statistics
Matches: 78, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
66 24 0.31
68 2 0.03
70 34 0.44
71 18 0.23
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (66 bp):
ATTTCATGCAAATATAACATAGAAAACAATGATCACAACAATATAAATTACATAATATATAACAA
T
Found at i:81068492 original size:12 final size:11
Alignment explanation
Indices: 81068477--81068523 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
81068467 AATAAAATGT
81068477 ATAATAATATAA
1 ATAAT-ATATAA
81068489 ATAATATGATAA
1 ATAATAT-ATAA
81068501 ATAATATATAAAA
1 ATAATATAT--AA
81068514 ATAATATATA
1 ATAATATATA
81068524 TACAATTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.16
12 16 0.50
13 11 0.34
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
ATAATATATAA
Found at i:81074698 original size:21 final size:19
Alignment explanation
Indices: 81074656--81074705 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
81074646 TACTAAAAAA
*
81074656 TTAATTTAAATGAATAAAT
1 TTAATTTAAAAGAATAAAT
81074675 TTACATTTAAAAGAATAGAAT
1 TTA-ATTTAAAAGAATA-AAT
81074696 TTAA-TTAAAA
1 TTAATTTAAAA
81074706 AAGATAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 9 0.32
20 13 0.46
21 6 0.21
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (19 bp):
TTAATTTAAAAGAATAAAT
Found at i:81074734 original size:17 final size:17
Alignment explanation
Indices: 81074701--81074796 Score: 54
Period size: 17 Copynumber: 5.7 Consensus size: 17
81074691 AGAATTTAAT
*
81074701 TAAAAAAGA-TAATTAAA
1 TAAAAAA-ATTAAATAAA
81074718 TAAAAAAATTAAATAAA
1 TAAAAAAATTAAATAAA
* * * *
81074735 -GAAATATTTAAAGAAA
1 TAAAAAAATTAAATAAA
*
81074751 TAAAAAATTTTAAA-AAA
1 TAAAAAA-ATTAAATAAA
* * * *
81074768 TAAACAATTTAATTTAA
1 TAAAAAAATTAAATAAA
*
81074785 TTAAAAAATTAA
1 TAAAAAAATTAA
81074797 TATTAAGGAA
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
16 18 0.29
17 38 0.61
18 6 0.10
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (17 bp):
TAAAAAAATTAAATAAA
Found at i:81074739 original size:13 final size:13
Alignment explanation
Indices: 81074698--81074739 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
81074688 AATAGAATTT
81074698 AATTAAA-AAAGA
1 AATTAAATAAAGA
*
81074710 TAATTAAATAAAAA
1 -AATTAAATAAAGA
81074724 AATTAAATAAAGA
1 AATTAAATAAAGA
81074737 AAT
1 AAT
81074740 ATTTAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (13 bp):
AATTAAATAAAGA
Found at i:81074778 original size:34 final size:33
Alignment explanation
Indices: 81074715--81074815 Score: 78
Period size: 33 Copynumber: 2.9 Consensus size: 33
81074705 AAAGATAATT
*
81074715 AAATAAAAAAATTAAATAAAGAAATATTTAAAG
1 AAATAAAAAAATTAAATAAAGAAAAATTTAAAG
* * **
81074748 AAATAAAAAATTTTAAA-AAATAAACAATTTAATT
1 AAATAAAAAA-ATTAAATAAAGAAA-AATTTAAAG
* * *
81074782 TAATTAAAAAATTAATATTAAGGAATAAATTTAA
1 AAATAAAAAAATTAA-A-TAAAGAA-AAATTTAA
81074816 TTTAAATAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
33 20 0.38
34 20 0.38
36 11 0.21
37 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (33 bp):
AAATAAAAAAATTAAATAAAGAAAAATTTAAAG
Found at i:81074794 original size:18 final size:18
Alignment explanation
Indices: 81074649--81074825 Score: 70
Period size: 18 Copynumber: 10.2 Consensus size: 18
81074639 TCGAATTTAC
81074649 TAAAAAA-TTAATTTAAA
1 TAAAAAATTTAATTTAAA
*
81074666 TGAATAAATTTACATTT--A
1 T-AAAAAATTTA-ATTTAAA
* ** *
81074684 -AAAGAATAGAATTTAAT
1 TAAAAAATTTAATTTAAA
**
81074701 TAAAAAAGATAA-TTAAA
1 TAAAAAATTTAATTTAAA
* *
81074718 TAAAAAAATTAA-ATAAA
1 TAAAAAATTTAATTTAAA
* * **
81074735 -GAAATATTTAA-AGAAA
1 TAAAAAATTTAATTTAAA
*
81074751 TAAAAAATTTTAA--AAAA
1 TAAAAAA-TTTAATTTAAA
* *
81074768 TAAACAATTTAATTTAAT
1 TAAAAAATTTAATTTAAA
*
81074786 TAAAAAA-TTAATATTAAG
1 TAAAAAATTTAAT-TTAAA
* *
81074804 GAATAAATTTAATTTAAA
1 TAAAAAATTTAATTTAAA
81074822 TAAA
1 TAAA
81074826 CATAGAAGAA
Statistics
Matches: 118, Mismatches: 30, Indels: 23
0.69 0.18 0.13
Matches are distributed among these distances:
15 4 0.03
16 23 0.19
17 37 0.31
18 42 0.36
19 8 0.07
20 4 0.03
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (18 bp):
TAAAAAATTTAATTTAAA
Found at i:81075513 original size:23 final size:23
Alignment explanation
Indices: 81075486--81075575 Score: 123
Period size: 23 Copynumber: 4.0 Consensus size: 23
81075476 GGCTTTGCTG
81075486 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
81075509 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * **
81075532 TTCAGGCACCTCGTGTGTCGT-T
1 ATCAGGCACTTTATGTGTCGTAT
81075554 -TCAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
81075575 A
1 A
81075576 CTGATCAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
20 9 0.15
21 9 0.15
22 1 0.02
23 40 0.68
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:81076910 original size:18 final size:19
Alignment explanation
Indices: 81076883--81076922 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
81076873 AAAAATTAAT
*
81076883 TTAAATTTAATAAGCATAA
1 TTAAATTTAATAAGCACAA
*
81076902 TTAAA-TTAATATGCACAA
1 TTAAATTTAATAAGCACAA
81076920 TTA
1 TTA
81076923 TTTTAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (19 bp):
TTAAATTTAATAAGCACAA
Found at i:81076944 original size:20 final size:18
Alignment explanation
Indices: 81076888--81076946 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
81076878 TTAATTTAAA
* * *
81076888 TTTAATAAGCATAATTAA
1 TTTAATATGCACAATTAT
*
81076906 ATTAATATGCACAATTAT
1 TTTAATATGCACAATTAT
*
81076924 TTTAATATTCAC-ATTAT
1 TTTAATATGCACAATTAT
81076941 TATTAA
1 T-TTAA
81076947 ATTAAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 6 0.18
18 28 0.82
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (18 bp):
TTTAATATGCACAATTAT
Found at i:81077011 original size:16 final size:16
Alignment explanation
Indices: 81076987--81077017 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81076977 ATTTATAAAA
*
81076987 GAAACTTACTTTATAG
1 GAAAATTACTTTATAG
81077003 GAAAATTACTTTATA
1 GAAAATTACTTTATA
81077018 AAATTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (16 bp):
GAAAATTACTTTATAG
Found at i:81078271 original size:21 final size:21
Alignment explanation
Indices: 81078248--81078286 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81078238 TTTTATGCTT
*
81078248 TTTTTTTA-TTTTTTATTTCC
1 TTTTTCTACTTTTTTATTTCC
81078268 TTTTTCTACTTTTTTATTT
1 TTTTTCTACTTTTTTATTT
81078287 GTTTATCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTCTACTTTTTTATTTCC
Found at i:81078299 original size:28 final size:27
Alignment explanation
Indices: 81078249--81078312 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 27
81078239 TTTATGCTTT
81078249 TTTTTTATTTTTTATTTCCTTTTTCTAC
1 TTTTTTATTTTTTA-TTCCTTTTTCTAC
*
81078277 TTTTTTATTTGTTTA-TCCTTTTTCTAT
1 TTTTTTATTT-TTTATTCCTTTTTCTAC
81078304 TTATTTTAT
1 TT-TTTTAT
81078313 AATATTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
27 13 0.39
28 16 0.48
29 4 0.12
ACGTcount: A:0.12, C:0.11, G:0.02, T:0.75
Consensus pattern (27 bp):
TTTTTTATTTTTTATTCCTTTTTCTAC
Found at i:81084873 original size:9 final size:9
Alignment explanation
Indices: 81084849--81084882 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
81084839 ATATAATAAT
*
81084849 TAATTATATT
1 TAATT-TATG
81084859 TAATTTATG
1 TAATTTATG
81084868 TAATTTATG
1 TAATTTATG
81084877 TAATTT
1 TAATTT
81084883 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (9 bp):
TAATTTATG
Found at i:81089430 original size:40 final size:40
Alignment explanation
Indices: 81089365--81089444 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
81089355 GGAATAATTT
* * *
81089365 TGAGGCAAGTTATTTGAATCTATTCTTTGAAAATCTTGCA
1 TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATCTTGCA
81089405 TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATCTTGCA
1 TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATCTTGCA
81089445 GGATATTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (40 bp):
TGAGGCAAGTTAGTTAAATCCATTCTTTGAAAATCTTGCA
Found at i:81090640 original size:35 final size:36
Alignment explanation
Indices: 81090596--81090733 Score: 165
Period size: 35 Copynumber: 3.9 Consensus size: 36
81090586 TCCTTATTGA
* *
81090596 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAT
** ** *
81090631 AATGTCATACCTACGTTTCTTAACTCAATAT-GGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAT
*
81090666 AATACCATACCTACGTTTCACAACTCAGTAT-GGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGGAT
* *
81090701 ATTACCATACCTACGTTTCACAAATCAGTATGG
1 AATACCATACCTACGTTTCACAACTCAGTATGG
81090734 ATGATACGTC
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
34 3 0.03
35 82 0.95
36 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (36 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGGAT
Found at i:81090733 original size:70 final size:70
Alignment explanation
Indices: 81090596--81090740 Score: 182
Period size: 70 Copynumber: 2.1 Consensus size: 70
81090586 TCCTTATTGA
* ** ** *
81090596 AATACCATACCTACATTTCACAACTCGGTATGGGAAATGTCATACCTACGTTTCTTAACTCAATA
1 AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACGTTTCACAAATCAATA
81090661 TGGAT
66 TGGAT
* ** * *
81090666 AATACCATACCTACGTTTCACAACTCAGTATGGTTATTACCATACCTACGTTTCACAAATCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACGTTTCACAAATCAATA
81090731 TGGAT
66 TGGAT
*
81090736 GATAC
1 AATAC
81090741 GTCTTATCTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
70 63 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACGTTTCACAAATCAATA
TGGAT
Found at i:81099369 original size:23 final size:24
Alignment explanation
Indices: 81099318--81099370 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
81099308 TTATCCCTTG
* *
81099318 AATATGTTAAAAATGTTTTAATTAT
1 AATAT-TTAAAAATATTCTAATTAT
81099343 --TATTTAAAAATATTCT-ATTAT
1 AATATTTAAAAATATTCTAATTAT
81099364 AATATTT
1 AATATTT
81099371 GAATTGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
21 5 0.21
22 11 0.46
23 8 0.33
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (24 bp):
AATATTTAAAAATATTCTAATTAT
Found at i:81105067 original size:5 final size:5
Alignment explanation
Indices: 81105057--81105084 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
81105047 CTGTGTGTTC
81105057 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
81105085 CACAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:81109146 original size:29 final size:29
Alignment explanation
Indices: 81109108--81109164 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
81109098 ATGGAAGAGG
* *
81109108 TGAAGAACTTGTTCGTTGAGAGTTCGTGA
1 TGAAGAACTTGTTCATTGAGAATTCGTGA
81109137 TGAAGAACTTGTTCATTGAGAATTCGTG
1 TGAAGAACTTGTTCATTGAGAATTCGTG
81109165 TCAAGGTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (29 bp):
TGAAGAACTTGTTCATTGAGAATTCGTGA
Found at i:81110683 original size:55 final size:55
Alignment explanation
Indices: 81110598--81110707 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
81110588 AGGTACATTA
81110598 CACTCTCAATAAAAGAACGAGATTTAAATCTTAAAGATGATATTATTAGGGGAAG
1 CACTCTCAATAAAAGAACGAGATTTAAATCTTAAAGATGATATTATTAGGGGAAG
*
81110653 CACTCTCAATAAAAGAACGATG-TTTGAATCTTAAAGATGATATTATTAGGGGAAG
1 CACTCTCAATAAAAGAACGA-GATTTAAATCTTAAAGATGATATTATTAGGGGAAG
81110708 AATTACAAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
55 52 0.98
56 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (55 bp):
CACTCTCAATAAAAGAACGAGATTTAAATCTTAAAGATGATATTATTAGGGGAAG
Found at i:81110782 original size:55 final size:56
Alignment explanation
Indices: 81110722--81110834 Score: 201
Period size: 55 Copynumber: 2.0 Consensus size: 56
81110712 ACAAACCCCG
* *
81110722 AATATAGACCGTGAAACGGATATAAAGAGTTCCAAAAAGACAAAA-AAAACAAAGC
1 AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGACAAAACAAAACAAAGC
81110777 AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGACAAAACAAAACAAAGC
1 AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGACAAAACAAAACAAAGC
81110833 AA
1 AA
81110835 ATTGGAAATC
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
55 43 0.78
56 12 0.22
ACGTcount: A:0.58, C:0.15, G:0.14, T:0.12
Consensus pattern (56 bp):
AATATAGACCGTAAAACGGATATAAAAAGTTCCAAAAAGACAAAACAAAACAAAGC
Found at i:81116590 original size:39 final size:40
Alignment explanation
Indices: 81116547--81116639 Score: 170
Period size: 39 Copynumber: 2.4 Consensus size: 40
81116537 AAATATTATA
81116547 CATTAGCGGCGTTTGCAATAAAACGCCAC-AAAAACTGAG
1 CATTAGCGGCGTTTGCAATAAAACGCCACAAAAAACTGAG
81116586 CATTAGCGGCGTTTGCAATAAAACGCCACAAAAAACTGAG
1 CATTAGCGGCGTTTGCAATAAAACGCCACAAAAAACTGAG
*
81116626 CAATAGCGGCGTTT
1 CATTAGCGGCGTTT
81116640 TTGGTCCAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 29 0.56
40 23 0.44
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (40 bp):
CATTAGCGGCGTTTGCAATAAAACGCCACAAAAAACTGAG
Found at i:81117443 original size:43 final size:42
Alignment explanation
Indices: 81117329--81117459 Score: 127
Period size: 43 Copynumber: 3.1 Consensus size: 42
81117319 GGGATAGAGG
* * * *
81117329 TTATGATATAATGTTTATTATTTTGGGGTTTAGGATTTATGAT
1 TTATGATATAATGTTTATTGTTTT-TGGTTTAGGGTTTAAGAT
* * * * *** *
81117372 TTAAGATTTAAGGTTTAATGTCCATGGTTTAAGGGTTTAAGGT
1 TTATGATATAATGTTTATTGTTTTTGGTTT-AGGGTTTAAGAT
*
81117415 TTATGATATAATGTTTATTGTTTTTGGTTTAGGGTTTATGAT
1 TTATGATATAATGTTTATTGTTTTTGGTTTAGGGTTTAAGAT
81117457 TTA
1 TTA
81117460 GAGTTTGTGG
Statistics
Matches: 66, Mismatches: 21, Indels: 3
0.73 0.23 0.03
Matches are distributed among these distances:
42 18 0.27
43 48 0.73
ACGTcount: A:0.25, C:0.02, G:0.22, T:0.51
Consensus pattern (42 bp):
TTATGATATAATGTTTATTGTTTTTGGTTTAGGGTTTAAGAT
Found at i:81117473 original size:35 final size:36
Alignment explanation
Indices: 81117405--81117481 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 36
81117395 ATGGTTTAAG
*
81117405 GGTTTAAGGTTTATGATATAATGTTTATTG-TTTTT
1 GGTTTAAGGTTTATGATATAATGTTTATGGTTTTTT
* * *
81117440 GGTTTAGGGTTTATGATTTAGA-GTTTGTGGTTTTTT
1 GGTTTAAGGTTTATGATATA-ATGTTTATGGTTTTTT
81117476 GGTTTA
1 GGTTTA
81117482 CAGTTAGGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 24 0.67
36 12 0.33
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (36 bp):
GGTTTAAGGTTTATGATATAATGTTTATGGTTTTTT
Found at i:81117902 original size:17 final size:18
Alignment explanation
Indices: 81117880--81117916 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81117870 AATATTTATT
81117880 TTAATATA-TTAAAATTA
1 TTAATATAGTTAAAATTA
*
81117897 TTAATATAGTTTAAATTA
1 TTAATATAGTTAAAATTA
81117915 TT
1 TT
81117917 TAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAATATAGTTAAAATTA
Found at i:81117919 original size:19 final size:18
Alignment explanation
Indices: 81117879--81117919 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
81117869 TAATATTTAT
81117879 TTTAATATATTAAAATTA
1 TTTAATATATTAAAATTA
*
81117897 -TTAATATAGTTTAAATTA
1 TTTAATATA-TTAAAATTA
81117915 TTTAA
1 TTTAA
81117920 GAGATAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAATATATTAAAATTA
Found at i:81122380 original size:31 final size:32
Alignment explanation
Indices: 81122342--81122413 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
81122332 TTGCTGTATT
81122342 TTATTTATATTTA-TATTT-AATCTA-ATTTTTA
1 TTATTTAT-TTTAGT-TTTGAATCTATATTTTTA
*
81122373 TTATTTATTTTAGTTTTGATTCTATATTTTTA
1 TTATTTATTTTAGTTTTGAATCTATATTTTTA
81122405 TT-TTTATTT
1 TTATTTATTT
81122414 GATAATGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
30 7 0.19
31 21 0.57
32 9 0.24
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (32 bp):
TTATTTATTTTAGTTTTGAATCTATATTTTTA
Found at i:81122389 original size:19 final size:19
Alignment explanation
Indices: 81122366--81122412 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
81122356 ATTTAATCTA
*
81122366 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
81122384 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
81122404 ATTTTTATT
1 ATTTTTATT
81122413 TGATAATGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:81122610 original size:43 final size:43
Alignment explanation
Indices: 81122538--81122685 Score: 190
Period size: 43 Copynumber: 3.4 Consensus size: 43
81122528 TTTTAAATTT
* *
81122538 CATGATCTTTAGCGGCGTTTTTTG-GAAAAGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCG-TTTGTGAGAAAAGCGCCGCTAAAGGC
** * * *
81122581 CATGTTCTTTAGCGGTGTTTGTGATAAAAGCGTCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGC
* * *
81122624 CATGACCTTTAGTGGCGTTTGTGGGGAAAGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGC
81122667 CATGACCTTTAGCGGCGTT
1 CATGACCTTTAGCGGCGTT
81122686 ATTTATAACG
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 5 0.06
43 85 0.94
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGC
Found at i:81133305 original size:5 final size:5
Alignment explanation
Indices: 81133295--81133319 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81133285 AACTTTATTC
81133295 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
81133320 GAAGTCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:81141966 original size:28 final size:28
Alignment explanation
Indices: 81141934--81142091 Score: 124
Period size: 28 Copynumber: 5.6 Consensus size: 28
81141924 GTGAAAACGA
** **
81141934 CACTTAGTGTGCGAATTATTGAGGATGG
1 CACTTAGTGTGCGAAACATCCAGGATGG
* *
81141962 CACTTAGTGTGCGAAACATCCAGAAATAG
1 CACTTAGTGTGCGAAACATCCAG-GATGG
* * ** *
81141991 CACTTACTGTGC-AAATTATTGAAGATGG
1 CACTTAGTGTGCGAAA-CATCCAGGATGG
*
81142019 CACTTAGTGGGC-AAGACATCCAGGATGG
1 CACTTAGTGTGCGAA-ACATCCAGGATGG
* * *
81142047 CACTTAGTGTGCGATACAT-CTGTGAAGG
1 CACTTAGTGTGCGAAACATCCAG-GATGG
81142075 CACTTAGTGTGCGAAAC
1 CACTTAGTGTGCGAAAC
81142092 TTTGAGAACA
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
27 2 0.02
28 80 0.79
29 19 0.19
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCCAGGATGG
Found at i:81142022 original size:57 final size:56
Alignment explanation
Indices: 81141934--81142058 Score: 171
Period size: 57 Copynumber: 2.2 Consensus size: 56
81141924 GTGAAAACGA
* * *
81141934 CACTTAGTGTGCGAATTATTGAGGATGGCACTTAGTGTGCGAA-ACATCCAGAAATAG
1 CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGGGC-AAGACATCCAG-AATAG
* * *
81141991 CACTTACTGTGCAAATTATTGAAGATGGCACTTAGTGGGCAAGACATCCAGGATGG
1 CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGGGCAAGACATCCAGAATAG
81142047 CACTTAGTGTGC
1 CACTTAGTGTGC
81142059 GATACATCTG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 16 0.27
57 44 0.73
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (56 bp):
CACTTAGTGTGCAAATTATTGAAGATGGCACTTAGTGGGCAAGACATCCAGAATAG
Found at i:81153792 original size:32 final size:32
Alignment explanation
Indices: 81153733--81153793 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
81153723 TATGGTCTGG
* *
81153733 GCTATTTTTGACCGTGTAAGCCACACGGGCAT
1 GCTATTTTGGACCGTATAAGCCACACGGGCAT
* * *
81153765 GCTATTTTGGGCCGTATAGGCCTCACGGG
1 GCTATTTTGGACCGTATAAGCCACACGGG
81153794 TGTATGGGCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.28
Consensus pattern (32 bp):
GCTATTTTGGACCGTATAAGCCACACGGGCAT
Found at i:81154067 original size:17 final size:18
Alignment explanation
Indices: 81154045--81154078 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81154035 TGGTATATGT
*
81154045 TATTCTGTTT-TATCTGG
1 TATTCTATTTGTATCTGG
81154062 TATTCTATTTGTATCTG
1 TATTCTATTTGTATCTG
81154079 ACTACAAGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.59
Consensus pattern (18 bp):
TATTCTATTTGTATCTGG
Found at i:81156180 original size:33 final size:33
Alignment explanation
Indices: 81156131--81156247 Score: 137
Period size: 33 Copynumber: 3.6 Consensus size: 33
81156121 ATGGACCTTT
* * * *
81156131 CCTTTTCTAGTTGTACACCCGAGGTGCACATTC
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
* *
81156164 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
* * * *
81156197 CCTTTTCAATTTGTACATACAAAGTGCACATAG
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
81156230 CCTTTTCAAG-TGTACACA
1 CCTTTTCAAGTTGTACACA
81156248 TATAGTGTAC
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
32 7 0.10
33 63 0.90
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (33 bp):
CCTTTTCAAGTTGTACACACGAAGTGCACATAC
Found at i:81156266 original size:32 final size:33
Alignment explanation
Indices: 81156164--81156336 Score: 143
Period size: 33 Copynumber: 5.3 Consensus size: 33
81156154 GTGCACATTC
* * * **
81156164 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * * ** * **
81156197 CCTTTTCAATTTGTACATACAAAGTGCACATAG
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* * *
81156230 CCTTTTCAAGT-GTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
*
81156262 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
1 CCTTTTCAAGTGGTACACACAAAGTATACCTTT
* **
81156295 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTTCA-AGTGGTACACACAAAGTATACCTTT
81156328 CCTTTTCAA
1 CCTTTTCAA
81156337 ATTGTACCAT
Statistics
Matches: 118, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
32 26 0.22
33 91 0.77
34 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (33 bp):
CCTTTTCAAGTGGTACACACAAAGTATACCTTT
Found at i:81157071 original size:21 final size:22
Alignment explanation
Indices: 81157025--81157072 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
81157015 TGTAAAAGTG
**
81157025 ATTTATCTATCAATAATCTTTC
1 ATTTATCTATCAATAAAATTTC
81157047 ATTT-TCTATCAA-AAAATTTC
1 ATTTATCTATCAATAAAATTTC
81157067 AATTTA
1 -ATTTA
81157073 CAGCATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 6 0.27
21 12 0.55
22 4 0.18
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATCTATCAATAAAATTTC
Found at i:81158763 original size:26 final size:26
Alignment explanation
Indices: 81158729--81158780 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81158719 TCCATTCAAA
*
81158729 ATTTTCACAAATTTCCCCTTCACATC
1 ATTTGCACAAATTTCCCCTTCACATC
* * *
81158755 ATTTGCACAATTTTCCCTTTCCCATC
1 ATTTGCACAAATTTCCCCTTCACATC
81158781 TTTTTAAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.35, G:0.02, T:0.40
Consensus pattern (26 bp):
ATTTGCACAAATTTCCCCTTCACATC
Found at i:81164665 original size:34 final size:34
Alignment explanation
Indices: 81164627--81164698 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
81164617 ACATAATTAT
*
81164627 ATATGTATAGTTTGGTATAATCAAAAGTGAATAC
1 ATATGTATAGTTTGATATAATCAAAAGTGAATAC
* * * * *
81164661 ATATGTATGGTTTGATATCATCGAAGGTGAATAT
1 ATATGTATAGTTTGATATAATCAAAAGTGAATAC
81164695 ATAT
1 ATAT
81164699 ATACATTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (34 bp):
ATATGTATAGTTTGATATAATCAAAAGTGAATAC
Found at i:81165680 original size:39 final size:38
Alignment explanation
Indices: 81165636--81165790 Score: 222
Period size: 39 Copynumber: 4.0 Consensus size: 38
81165626 CAAGACACTG
*
81165636 GAAATGTATCCGGGCTAAAGTCTCGCAAGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTC-CGCAGGCTTCGTGCTA
81165675 GAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTCC-GCAGGCTTCGTGCTA
*
81165714 GAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGC-A
1 GAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTA
* *
81165752 GGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTTGTGCT
1 -GAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTGCT
81165791 GGTAATATAA
Statistics
Matches: 109, Mismatches: 3, Indels: 7
0.92 0.03 0.06
Matches are distributed among these distances:
38 2 0.02
39 105 0.96
40 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
GAAATGTATCCGGGCTAAAGTCCGCAGGCTTCGTGCTA
Found at i:81174632 original size:3 final size:3
Alignment explanation
Indices: 81174624--81174664 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
81174614 AATTTATTTG
81174624 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
81174665 TACAACAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:81176123 original size:17 final size:18
Alignment explanation
Indices: 81176101--81176137 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
81176091 TTGATTGGGT
81176101 TGTGTGGGCC-ACACGAG
1 TGTGTGGGCCAACACGAG
81176118 TGTGTGGGCCAACACGAG
1 TGTGTGGGCCAACACGAG
81176136 TG
1 TG
81176138 AACCACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (18 bp):
TGTGTGGGCCAACACGAG
Found at i:81183103 original size:26 final size:25
Alignment explanation
Indices: 81183052--81183115 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
81183042 ATAAAAAATC
* *
81183052 TTTCCCTTCACA--ATTTTCACAGT
1 TTTCCCTTCACATCATTTGCACAAT
81183075 TTTCCCTTCCACATCATTTGCACAAT
1 TTTCCCTT-CACATCATTTGCACAAT
81183101 TTTCCCATTCACATC
1 TTTCCC-TTCACATC
81183116 TTTCTGTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 8 0.23
24 4 0.11
26 21 0.60
27 2 0.06
ACGTcount: A:0.22, C:0.34, G:0.03, T:0.41
Consensus pattern (25 bp):
TTTCCCTTCACATCATTTGCACAAT
Found at i:81183688 original size:38 final size:38
Alignment explanation
Indices: 81183645--81183726 Score: 164
Period size: 38 Copynumber: 2.2 Consensus size: 38
81183635 TGGATCATAG
81183645 AGATACAAAGAAATATTTGACAAAGTATCTATTCTCAA
1 AGATACAAAGAAATATTTGACAAAGTATCTATTCTCAA
81183683 AGATACAAAGAAATATTTGACAAAGTATCTATTCTCAA
1 AGATACAAAGAAATATTTGACAAAGTATCTATTCTCAA
81183721 AGATAC
1 AGATAC
81183727 CGTTATTACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (38 bp):
AGATACAAAGAAATATTTGACAAAGTATCTATTCTCAA
Found at i:81196598 original size:24 final size:24
Alignment explanation
Indices: 81196571--81196628 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
81196561 TCTGGAAAAG
81196571 TTATTTTTACATATATTAATAAAT
1 TTATTTTTACATATATTAATAAAT
* * * *
81196595 TTATATATATATATATTAATAATT
1 TTATTTTTACATATATTAATAAAT
81196619 TATATTTTTA
1 T-TATTTTTA
81196629 AATTGTTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
TTATTTTTACATATATTAATAAAT
Found at i:81197089 original size:12 final size:12
Alignment explanation
Indices: 81197072--81197097 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81197062 CAATTCCTGT
81197072 ATGCCTACAAAA
1 ATGCCTACAAAA
81197084 ATGCCTACAAAA
1 ATGCCTACAAAA
81197096 AT
1 AT
81197098 CAATTCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.19
Consensus pattern (12 bp):
ATGCCTACAAAA
Done.