Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 248 of 320
Found at i:81197546 original size:13 final size:13
Alignment explanation
Indices: 81197525--81197601 Score: 84
Period size: 13 Copynumber: 5.9 Consensus size: 13
81197515 TGTTTGGCAA
81197525 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
81197538 TGTTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
81197551 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
81197564 TACTTTT-AAGGAG
1 TGCTTTTGAA-AAG
81197577 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
81197590 TGTTTTTGAAAA
1 TGCTTTTGAAAA
81197602 TTTGAATGTT
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
12 2 0.04
13 47 0.92
14 2 0.04
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:81198178 original size:3 final size:3
Alignment explanation
Indices: 81198170--81198205 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
81198160 TGATTCACCG
* *
81198170 TCA TCA TCA CCA TCA TCA TCG TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
81198206 CTTTCTCAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:81198185 original size:12 final size:12
Alignment explanation
Indices: 81198164--81198202 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
81198154 ATTGTTTGAT
*
81198164 TCACCGTCATCA
1 TCACCATCATCA
81198176 TCACCATCATCA
1 TCACCATCATCA
**
81198188 TCGTCATCATCA
1 TCACCATCATCA
81198200 TCA
1 TCA
81198203 TCACTTTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.38, G:0.05, T:0.28
Consensus pattern (12 bp):
TCACCATCATCA
Found at i:81199897 original size:72 final size:71
Alignment explanation
Indices: 81199563--81199899 Score: 392
Period size: 72 Copynumber: 4.7 Consensus size: 71
81199553 TCACCTGTGA
* * * * **
81199563 ATAAATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTAGTATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTAACATAAATAA
81199626 GTAGAAC
65 GTAGAAC
* * * *
81199633 ATAAATTTAATATCCAAAAATCAAACATAATCAATTATTGATAAAACTA-CTCCTAAGCATAAAT
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGAT--TAA-CATAAAT
* *
81199697 AATTAGACC
63 AAGTAGAAC
* * * * *
81199706 ATAAATTCAATGTCCAAATACCAAACATAAACAACTATTAATAAAACAAGATTACACATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
81199771 GTAGAAC
65 GTAGAAC
* * * *
81199778 ATAAATTCAATATCCAAAAACTAAACATAAACAACCATTAATAAAACTAGATTACACATAAATAA
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
*
81199843 GTAAAAC
65 GTAGAAC
*
81199850 ATAAATTTAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
81199900 TTTAGCATTA
Statistics
Matches: 229, Mismatches: 32, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
70 15 0.07
71 29 0.13
72 129 0.56
73 55 0.24
74 1 0.00
ACGTcount: A:0.54, C:0.15, G:0.04, T:0.26
Consensus pattern (71 bp):
ATAAATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTAACATAAATAAG
TAGAAC
Found at i:81200349 original size:18 final size:18
Alignment explanation
Indices: 81200328--81200375 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
81200318 TCCATCAATT
*
81200328 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
81200346 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
81200364 TGAACATCATTT
1 TGAACATCATTT
81200376 CTCACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:81205883 original size:11 final size:10
Alignment explanation
Indices: 81205863--81205914 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
81205853 GTAAGACTTG
81205863 TTTTTAAAAA
1 TTTTTAAAAA
81205873 TTTTGTAAAAA
1 TTTT-TAAAAA
81205884 TTATTTAAAAA
1 TT-TTTAAAAA
* *
81205895 TATTAAAAAA
1 TTTTTAAAAA
* *
81205905 GTTGTAAAAA
1 TTTTTAAAAA
81205915 ACACTAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 17 0.50
11 15 0.44
12 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:81209457 original size:30 final size:30
Alignment explanation
Indices: 81209400--81209457 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81209390 TATAATTTCA
* *
81209400 TTTTATTTTTATTTTAATTTGGCCCTAACC
1 TTTTATTTTTATTTCAATTTAGCCCTAACC
* *
81209430 TTTTATTTTTGTTTCAATTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGCCCTAA
81209458 TAGCTATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAACC
Found at i:81209733 original size:23 final size:22
Alignment explanation
Indices: 81209707--81209782 Score: 77
Period size: 23 Copynumber: 3.5 Consensus size: 22
81209697 TTTAAAAAAT
*
81209707 TATTATATATTTTTTTATTTATG
1 TATTAT-TATTTTTTTATTTATA
*
81209730 TATTATT-TGTTATATTATTTATA
1 TATTATTAT-TT-TTTTATTTATA
*
81209753 TTTTATTA-TTTTTTATTTATA
1 TATTATTATTTTTTTATTTATA
81209774 TATT-TTATT
1 TATTATTATT
81209783 ATATATTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
20 3 0.07
21 15 0.34
22 5 0.11
23 21 0.48
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (22 bp):
TATTATTATTTTTTTATTTATA
Found at i:81209761 original size:49 final size:49
Alignment explanation
Indices: 81209705--81209867 Score: 124
Period size: 49 Copynumber: 3.2 Consensus size: 49
81209695 CATTTAAAAA
81209705 ATTATTATATATTTTTTTATTTATGTATTATTTGTTATATTATTTATATT
1 ATTATTATATATTTTTTTATTTAT-TATTATTTGTTATATTATTTATATT
* * * * *
81209755 -TTATTAT-T-TTTTATTTATATATTTTATTATATATTAAATCATTT-TATT
1 ATTATTATATATTTT-TTTAT-T-TATTATTATTTGTTATATTATTTATATT
*
81209803 ATTA-TATATTATTCATTTCTTATTTTATTATATATTATGTTATCTTA-TTAT-TT
1 ATTATTATA-TATT--TTT-TTA-TTTATTAT-TATT-TGTTATATTATTTATATT
81209856 ATTATTATATAT
1 ATTATTATATAT
81209868 AATTTTAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 27
0.70 0.09 0.22
Matches are distributed among these distances:
47 4 0.05
48 13 0.15
49 27 0.31
50 3 0.03
51 2 0.02
52 6 0.07
53 20 0.23
54 12 0.14
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (49 bp):
ATTATTATATATTTTTTTATTTATTATTATTTGTTATATTATTTATATT
Found at i:81209783 original size:23 final size:26
Alignment explanation
Indices: 81209730--81209784 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 26
81209720 TTTATTTATG
*
81209730 TATTATTTGTTATATTATTTATATTT
1 TATTATTTGTTATATTATATATATTT
81209756 TATTATTT-TT-TATT-TATATATTT
1 TATTATTTGTTATATTATATATATTT
81209779 TATTAT
1 TATTAT
81209785 ATATTAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 14 0.50
24 4 0.14
25 2 0.07
26 8 0.29
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (26 bp):
TATTATTTGTTATATTATATATATTT
Found at i:81209815 original size:33 final size:32
Alignment explanation
Indices: 81209740--81209815 Score: 82
Period size: 35 Copynumber: 2.3 Consensus size: 32
81209730 TATTATTTGT
** *
81209740 TATATTATTTATATTTTATTATTTTTTATTTA
1 TATATTATTTATATTAAATCATTTTTTATTTA
81209772 TATATTTTATTATATATTAAATCATTTTATTA-TTA
1 TATA--TTATT-TATATTAAATCATTTT-TTATTTA
81209807 TATATTATT
1 TATATTATT
81209816 CATTTCTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
32 4 0.11
33 5 0.14
34 5 0.14
35 20 0.54
36 3 0.08
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (32 bp):
TATATTATTTATATTAAATCATTTTTTATTTA
Found at i:81209850 original size:20 final size:20
Alignment explanation
Indices: 81209822--81209860 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81209812 TATTCATTTC
*
81209822 TTATTTTATTATATATTATG
1 TTATCTTATTATATATTATG
*
81209842 TTATCTTATTATTTATTAT
1 TTATCTTATTATATATTAT
81209861 TATATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATCTTATTATATATTATG
Found at i:81209853 original size:23 final size:22
Alignment explanation
Indices: 81209740--81209868 Score: 82
Period size: 23 Copynumber: 5.6 Consensus size: 22
81209730 TATTATTTGT
81209740 TATATTATTTATATT-TTATTA
1 TATATTATTTATATTATTATTA
* * *
81209761 TTTTTTATTTATATATTTTATTA
1 TATATTATTTATAT-TATTATTA
* * *
81209784 TATATTAAATCATTTTATTATTA
1 TATATT-ATTTATATTATTATTA
* *
81209807 TATATTATTCATTTCTTATTTTATTA
1 TATATTATT--TATATTA--TTATTA
*
81209833 TATATTATGTTATCTTATTATT-
1 TATATTAT-TTATATTATTATTA
*
81209855 TATTATTATATATA
1 TA-TATTATTTATA
81209869 ATTTTAAAAT
Statistics
Matches: 84, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
21 12 0.14
22 8 0.10
23 34 0.40
24 9 0.11
25 6 0.07
26 14 0.17
27 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (22 bp):
TATATTATTTATATTATTATTA
Found at i:81213825 original size:33 final size:33
Alignment explanation
Indices: 81213785--81213847 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
81213775 GAAAGAAAGA
81213785 AAAACTTGGAAGCAACACGTCCTTACGGTAGAG
1 AAAACTTGGAAGCAACACGTCCTTACGGTAGAG
*
81213818 AAAACTTGGAAGCAACACGTCCTTATGGTA
1 AAAACTTGGAAGCAACACGTCCTTACGGTA
81213848 CACGCACTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (33 bp):
AAAACTTGGAAGCAACACGTCCTTACGGTAGAG
Found at i:81221834 original size:45 final size:45
Alignment explanation
Indices: 81221785--81222120 Score: 237
Period size: 45 Copynumber: 7.5 Consensus size: 45
81221775 TTAGACAGGG
*
81221785 AGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * ** * *
81221830 AGCAGATCGAAGAT-GACAGATTTGGCATCTC-TGT-AATAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGTTTACATC--GA
*
81221875 AGCAGATCGAAGATAACAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * ** *
81221920 AGCAGATCGAAGAT-GACAGATTTGGCGTCTC-TGT-AATAGA-CGA
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGTTTACATCGA
* *
81221963 GGAGCAGATCGAAGATAGTAGATCTGACATTTGTGTGTTTACATCGA
1 --AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * * * *
81222010 AGTAGATCGAAAAT-GACATATTTGGC-GTC-TTTGTATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACATTCGTGTGT-TTACATC--GA
*
81222055 AGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
*
81222100 AGCAGATCGAAAATAGCAGAT
1 AGCAGATCGAAGATAGCAGAT
81222121 TTGGCGTCTC
Statistics
Matches: 215, Mismatches: 52, Indels: 48
0.68 0.17 0.15
Matches are distributed among these distances:
43 9 0.04
44 16 0.07
45 163 0.76
46 18 0.08
47 9 0.04
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
Found at i:81221854 original size:90 final size:90
Alignment explanation
Indices: 81221745--81222146 Score: 644
Period size: 90 Copynumber: 4.5 Consensus size: 90
81221735 CGGGGAACAA
*
81221745 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
*
81221810 CATTCGTATGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * *
81221835 ATCGAAGATGACAGATTTGGCATCTCTGTAATAGACGGGGAGCAGATCGAAGATAACAGATCTGA
1 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
81221900 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * *
81221925 ATCGAAGATGACAGATTTGGCGTCTCTGTAATAGACGAGGAGCAGATCGAAGATAGTAGATCTGA
1 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* *
81221990 CATTTGTGTGTTTACATCGAAGTAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * *
81222015 ATCGAAAATGACATATTTGGCGTCTTTGTATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGA
1 ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
81222080 CATTCGTGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
*
81222105 ATCGAAAAT-AGCAGATTTGGCGTCTCTGTATTTGACGGGGAG
1 ATCGAAAATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAG
81222147 AAGCTCAAAG
Statistics
Matches: 288, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
89 1 0.00
90 287 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
ATCGAAAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
CATTCGTGTGTTTACATCGAAGCAG
Found at i:81223709 original size:11 final size:11
Alignment explanation
Indices: 81223695--81223839 Score: 73
Period size: 11 Copynumber: 12.8 Consensus size: 11
81223685 TATATATTTT
*
81223695 TTATTTATGTA
1 TTATTTATATA
*
81223706 TTATTTGTTATA
1 TTATTT-ATATA
*
81223718 TTATTTATATT
1 TTATTTATATA
*
81223729 TTA-TTATATT
1 TTATTTATATA
*
81223739 TTATTTATATT
1 TTATTTATATA
81223750 TTA-TTATATA
1 TTATTTATATA
* * *
81223760 TTAAATCATTTTA
1 TT-ATTTA-TATA
*
81223773 TTATATATATTA
1 TTATTTATA-TA
*
81223785 TTCATTTCT-TA
1 TT-ATTTATATA
*
81223796 TTTTATTATATA
1 TTAT-TTATATA
*
81223808 TTATGTTATCTTA
1 TTAT-TTAT-ATA
81223821 TTATTTAT-TA
1 TTATTTATATA
*
81223831 TTATATATA
1 TTATTTATA
81223840 ATTTTAAAAT
Statistics
Matches: 104, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
10 28 0.27
11 31 0.30
12 30 0.29
13 15 0.14
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (11 bp):
TTATTTATATA
Found at i:81223821 original size:20 final size:20
Alignment explanation
Indices: 81223793--81223831 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81223783 TATTCATTTC
*
81223793 TTATTTTATTATATATTATG
1 TTATCTTATTATATATTATG
*
81223813 TTATCTTATTATTTATTAT
1 TTATCTTATTATATATTAT
81223832 TATATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATCTTATTATATATTATG
Found at i:81223822 original size:48 final size:44
Alignment explanation
Indices: 81223714--81223845 Score: 135
Period size: 48 Copynumber: 2.9 Consensus size: 44
81223704 TATTATTTGT
81223714 TATATTATTTATATT-TTATTATATT-TTATTTATATTTTATTA
1 TATATTATTTATATTATTATTATATTATTATTTATATTTTATTA
* * * *
81223756 TATATTAAATCATTTTATTATATATATTATTCATTTCTTATTTTATTA
1 TATATT-ATTTATATTATTAT-TATATTATT-ATTT-ATATTTTATTA
* *
81223804 TATATTATGTTATCTTATTATT-TATTATTATATATAATTTTA
1 TATATTAT-TTATATTATTATTATATTATTATTTAT-ATTTTA
81223846 AAATTTACAA
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
42 6 0.08
43 6 0.08
44 5 0.07
45 15 0.21
46 9 0.12
47 6 0.08
48 26 0.36
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (44 bp):
TATATTATTTATATTATTATTATATTATTATTTATATTTTATTA
Found at i:81223824 original size:28 final size:26
Alignment explanation
Indices: 81223681--81223838 Score: 94
Period size: 21 Copynumber: 6.4 Consensus size: 26
81223671 CATTTAAAAA
* *
81223681 TTATTATATATTTTTTATTTATGTATT
1 TTATTATATATTATTCATTTAT-TATT
* *
81223708 AT-TTGT-TA-TATT-ATTTA-TATT
1 TTATTATATATTATTCATTTATTATT
81223729 TTA-T-TATATT-TT-ATTTA-TATT
1 TTATTATATATTATTCATTTATTATT
*
81223750 TTATTATATATTAAATCA-TT-TTA--
1 TTATTATATATT-ATTCATTTATTATT
*
81223773 TTA-TATATATTATTCATTTCTTATT
1 TTATTATATATTATTCATTTATTATT
*
81223798 TTATTATATATTATGTTATCTTATTATTT
1 TTATTATATATTAT-TCAT-TTATTA-TT
81223827 ATTATTATATAT
1 -TTATTATATAT
81223839 AATTTTAAAA
Statistics
Matches: 105, Mismatches: 8, Indels: 33
0.72 0.05 0.23
Matches are distributed among these distances:
20 1 0.01
21 26 0.25
22 12 0.11
23 17 0.16
24 3 0.03
25 10 0.10
26 14 0.13
27 4 0.04
28 5 0.05
29 2 0.02
30 11 0.10
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (26 bp):
TTATTATATATTATTCATTTATTATT
Found at i:81223828 original size:7 final size:7
Alignment explanation
Indices: 81223681--81223832 Score: 57
Period size: 7 Copynumber: 21.1 Consensus size: 7
81223671 CATTTAAAAA
81223681 TTATTAT
1 TTATTAT
* *
81223688 ATATTTT
1 TTATTAT
81223695 TTATTTAT
1 TTA-TTAT
*
81223703 GTATTAT
1 TTATTAT
*
81223710 TTGTTA-
1 TTATTAT
81223716 -TATTAT
1 TTATTAT
81223722 TTA-TATT
1 TTATTA-T
81223729 TTATTAT
1 TTATTAT
81223736 ATT-TTAT
1 -TTATTAT
81223743 TTA-TATT
1 TTATTA-T
81223750 TTATTAT
1 TTATTAT
* *
81223757 ATATTAAA
1 TTATT-AT
* *
81223765 TCATTTT
1 TTATTAT
81223772 ATTATATAT
1 -TTAT-TAT
81223781 ATTATTCAT
1 -TTATT-AT
*
81223790 TTCTTATT
1 TTATTA-T
81223798 TTATTAT
1 TTATTAT
*
81223805 ATATTAT
1 TTATTAT
*
81223812 GTTA-T-C
1 -TTATTAT
81223818 TTATTAT
1 TTATTAT
81223825 TTATTAT
1 TTATTAT
81223832 T
1 T
81223833 ATATATAATT
Statistics
Matches: 106, Mismatches: 22, Indels: 34
0.65 0.14 0.21
Matches are distributed among these distances:
5 7 0.07
6 7 0.07
7 52 0.49
8 31 0.29
9 9 0.08
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.66
Consensus pattern (7 bp):
TTATTAT
Found at i:81227384 original size:90 final size:90
Alignment explanation
Indices: 81227137--81227367 Score: 345
Period size: 90 Copynumber: 2.6 Consensus size: 90
81227127 AACTTTAATC
* * *
81227137 TGCAAATATGTTGTGCATTCACAACCATCTAACAACGTATTAACCTACAACACTGGTGGTTCATC
1 TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAACACTGGTGGTTTATC
*
81227202 CACCCACATTCTTACAGCTCCCATA
66 CACCCACATTCTGACAGCTCCCATA
* * * **
81227227 TGCAAATATGTTATGTATTCATAACCATCTGACAGCGTATTAACCTGTAACACTGGTGGTTTATC
1 TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAACACTGGTGGTTTATC
* *
81227292 CACCCACATTCTGGCAGCTCTCATA
66 CACCCACATTCTGACAGCTCCCATA
* *
81227317 TGCAAATATGTTGTGCATTCACAATCATCTGATAGCGTATTAACCTACAAC
1 TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAAC
81227368 TTTTATGGTT
Statistics
Matches: 123, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
90 123 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (90 bp):
TGCAAATATGTTGTGCATTCACAACCATCTGACAGCGTATTAACCTACAACACTGGTGGTTTATC
CACCCACATTCTGACAGCTCCCATA
Found at i:81229532 original size:30 final size:30
Alignment explanation
Indices: 81229490--81229548 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81229480 GTTGTTTTAG
81229490 TTTTTTATTTTTTTAGCCTTTAAATTTGTT
1 TTTTTTATTTTTTTAGCCTTTAAATTTGTT
*
81229520 TTTTTTCA-TTTTTTAGTCTTTAAATTTGT
1 TTTTTT-ATTTTTTTAGCCTTTAAATTTGT
81229549 CTCTCTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.69
Consensus pattern (30 bp):
TTTTTTATTTTTTTAGCCTTTAAATTTGTT
Found at i:81229562 original size:30 final size:30
Alignment explanation
Indices: 81229498--81229563 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
81229488 AGTTTTTTAT
* * *
81229498 TTTTTTAGCCTTTAAATTTGTTTTTTTTCA
1 TTTTTTAGCCTTTAAATTTGTTCTCTCTCA
*
81229528 TTTTTTAGTCTTTAAATTTGTCTCTCTCTC-
1 TTTTTTAGCCTTTAAATTTGT-TCTCTCTCA
81229558 TTTTTT
1 TTTTTT
81229564 CAAATTATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 26 0.84
31 5 0.16
ACGTcount: A:0.14, C:0.14, G:0.06, T:0.67
Consensus pattern (30 bp):
TTTTTTAGCCTTTAAATTTGTTCTCTCTCA
Found at i:81229721 original size:29 final size:28
Alignment explanation
Indices: 81229667--81229754 Score: 99
Period size: 27 Copynumber: 3.1 Consensus size: 28
81229657 TTTAAAAAAA
81229667 TTAAAAATTCAAAAATATATAAAAATCATTT
1 TTAAAAATT-AAAAAT-TATAAAAAT-ATTT
* *
81229698 TTAAAAATTAAAAATTATTAAAAT-TAT
1 TTAAAAATTAAAAATTATAAAAATATTT
*
81229725 TTAAAACTATAAAAATTA-AAAAATATTT
1 TTAAAAAT-TAAAAATTATAAAAATATTT
81229753 TT
1 TT
81229755 TAGTATTTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
27 14 0.28
28 13 0.26
29 8 0.16
30 6 0.12
31 9 0.18
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (28 bp):
TTAAAAATTAAAAATTATAAAAATATTT
Found at i:81236168 original size:49 final size:49
Alignment explanation
Indices: 81236096--81236193 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
81236086 AAAGAAGTTG
81236096 AAGAAGAGCCTAAAAAAGAAAGGTTATCGAAGCTTGAATCAATGATACT
1 AAGAAGAGCCTAAAAAAGAAAGGTTATCGAAGCTTGAATCAATGATACT
81236145 AAGAAGAGCCTAAAAAAGAAAGGTTATCGAAGCTTGAATCAATGATACT
1 AAGAAGAGCCTAAAAAAGAAAGGTTATCGAAGCTTGAATCAATGATACT
81236194 TAATCATGCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (49 bp):
AAGAAGAGCCTAAAAAAGAAAGGTTATCGAAGCTTGAATCAATGATACT
Found at i:81239814 original size:14 final size:14
Alignment explanation
Indices: 81239790--81239830 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
81239780 ATCCCTCTTT
81239790 CTTTTCGTTTCTTCC
1 CTTTTC-TTTCTTCC
*
81239805 CTTTTCTTTCTTCT
1 CTTTTCTTTCTTCC
*
81239819 CATTTCTTTCTT
1 CTTTTCTTTCTT
81239831 TTTTCCATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.66
Consensus pattern (14 bp):
CTTTTCTTTCTTCC
Found at i:81244595 original size:39 final size:39
Alignment explanation
Indices: 81244551--81244632 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
81244541 ATAACTTATA
81244551 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATT
1 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATT
*
81244590 TTTTTATAATTTTTAAAATATTAAATTATTTTTTTCATT
1 TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATT
81244629 TTTT
1 TTTT
81244633 GGGCCAAAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (39 bp):
TTTTTATAATTTTTAAAACATTAAATTATTTTTTTCATT
Found at i:81250579 original size:33 final size:35
Alignment explanation
Indices: 81250542--81250622 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
81250532 TTTGATTCTA
*
81250542 TGGGTAATTT-TGA-AAGTTACCATTGATGAGTTT
1 TGGGTAATTTATGAGAAGTTACCATTGATGAGTTC
*
81250575 TGGGT-ATTTATGATGAATTTACCATTGATGAGTTC
1 TGGGTAATTTATGA-GAAGTTACCATTGATGAGTTC
81250610 TGGGT-ATTTATGA
1 TGGGTAATTTATGA
81250623 TGAATTAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
32 4 0.09
33 8 0.19
35 31 0.72
ACGTcount: A:0.26, C:0.06, G:0.25, T:0.43
Consensus pattern (35 bp):
TGGGTAATTTATGAGAAGTTACCATTGATGAGTTC
Found at i:81250598 original size:35 final size:35
Alignment explanation
Indices: 81250558--81250628 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
81250548 ATTTTGAAAG
*
81250558 TTACCATTGATGAGTTTTGGGTATTTATGATGAAT
1 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
81250593 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
1 TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
81250628 T
1 T
81250629 AACATAGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.45
Consensus pattern (35 bp):
TTACCATTGATGAGTTCTGGGTATTTATGATGAAT
Found at i:81260252 original size:17 final size:17
Alignment explanation
Indices: 81260225--81260257 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
81260215 TAAGTGCATT
81260225 TTTTTATGTTTTTGTTGA
1 TTTTTATG-TTTTGTTGA
81260243 TTTTTA-GTTTTGTTG
1 TTTTTATGTTTTGTTG
81260258 TTAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.53
17 1 0.07
18 6 0.40
ACGTcount: A:0.09, C:0.00, G:0.18, T:0.73
Consensus pattern (17 bp):
TTTTTATGTTTTGTTGA
Found at i:81260966 original size:25 final size:25
Alignment explanation
Indices: 81260926--81260980 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
81260916 TTAGTTTAGG
81260926 TTTTTTTTTCTCTTCT-TTTCTTTC
1 TTTTTTTTTCTCTTCTCTTTCTTTC
* * *
81260950 TTTTTTTTTCTTTTTCTCTTTGTTTG
1 TTTTTTTTTC-TCTTCTCTTTCTTTC
81260976 TTTTT
1 TTTTT
81260981 GCTGGAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 10 0.38
25 5 0.19
26 11 0.42
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.82
Consensus pattern (25 bp):
TTTTTTTTTCTCTTCTCTTTCTTTC
Found at i:81260980 original size:22 final size:24
Alignment explanation
Indices: 81260925--81260980 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 24
81260915 TTTAGTTTAG
*
81260925 GTTTTTTTTTCTCTTCTTTTCTTT
1 GTTTTTTTTTCTCTTCTTCTCTTT
*
81260949 CTTTTTTTTTCT-TT-TTCTCTTT
1 GTTTTTTTTTCTCTTCTTCTCTTT
*
81260971 GTTTGTTTTT
1 GTTTTTTTTT
81260981 GCTGGAACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 15 0.54
23 2 0.07
24 11 0.39
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.80
Consensus pattern (24 bp):
GTTTTTTTTTCTCTTCTTCTCTTT
Found at i:81267239 original size:30 final size:30
Alignment explanation
Indices: 81267205--81267267 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
81267195 ACTTATTTTG
81267205 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* *
81267235 TTGTTAATTTTTTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
81267265 TTG
1 TTG
81267268 CTTTTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.03, G:0.14, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:81267413 original size:9 final size:11
Alignment explanation
Indices: 81267389--81267423 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
81267379 TATATATATT
81267389 TAAAAATAATA
1 TAAAAATAATA
81267400 TAAAAATAATA
1 TAAAAATAATA
*
81267411 AAAAAATTAATA
1 TAAAAA-TAATA
81267423 T
1 T
81267424 GGGTGGGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:81277483 original size:41 final size:43
Alignment explanation
Indices: 81277405--81277521 Score: 141
Period size: 41 Copynumber: 2.7 Consensus size: 43
81277395 TTTAGGACGT
* *
81277405 TGGCATCGATATATGTGGTTACGTGTAAGAACATGTCTGGGACA-
1 TGGCATCG--ATATGTGATTACGTGTAAGACCATGTCTGGGACAG
* *
81277449 TCGGCATCG-TATTTGATT-CGTGTAAGACCCTGTCTGGGACAG
1 T-GGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACAG
*
81277491 TGGCATCGATATGTGATTACATGTAAGACCA
1 TGGCATCGATATGTGATTACGTGTAAGACCA
81277522 CGTCCGAGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 28 0.45
42 16 0.26
43 10 0.16
44 1 0.02
45 7 0.11
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACAG
Found at i:81278770 original size:35 final size:35
Alignment explanation
Indices: 81278731--81278803 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
81278721 TGTGTATAAT
*
81278731 TGCTTGGTTATTTAATGAGTTAAAATATGTTTCAA
1 TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
81278766 TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
1 TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
81278801 TGC
1 TGC
81278804 ATGATTATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (35 bp):
TGCTTGGTTATTTAATGAGTTAAAATAGGTTTCAA
Found at i:81286314 original size:15 final size:15
Alignment explanation
Indices: 81286294--81286324 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
81286284 CATGAAATTC
81286294 TCCATTTGCATCTTG
1 TCCATTTGCATCTTG
81286309 TCCATTTGCATCTTG
1 TCCATTTGCATCTTG
81286324 T
1 T
81286325 GGGTACCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (15 bp):
TCCATTTGCATCTTG
Found at i:81286677 original size:30 final size:30
Alignment explanation
Indices: 81286642--81286699 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81286632 TAAGCACTTC
* *
81286642 CACACGGGTAATCCACACGCCCGTGTGTGA
1 CACACGGGTAAGCCACACACCCGTGTGTGA
* *
81286672 CACACGGGTAGGGCACACACCCGTGTGT
1 CACACGGGTAAGCCACACACCCGTGTGT
81286700 CATGACCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (30 bp):
CACACGGGTAAGCCACACACCCGTGTGTGA
Found at i:81294484 original size:10 final size:10
Alignment explanation
Indices: 81294469--81294496 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
81294459 TCATCGTTGT
81294469 GACCACCATC
1 GACCACCATC
81294479 GACCACCATC
1 GACCACCATC
81294489 GACCACCA
1 GACCACCA
81294497 CTATCGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.50, G:0.11, T:0.07
Consensus pattern (10 bp):
GACCACCATC
Found at i:81300572 original size:16 final size:18
Alignment explanation
Indices: 81300524--81300573 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 18
81300514 GAGAAAAAAA
*
81300524 ATATTTTTATTAATTTAT
1 ATATTTTTATTTATTTAT
**
81300542 ATATTTTTAAATATTT-T
1 ATATTTTTATTTATTTAT
81300559 -TATTTTTATTTATTT
1 ATATTTTTATTTATTT
81300574 GGCATACTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 13 0.48
17 1 0.04
18 13 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATATTTTTATTTATTTAT
Found at i:81302454 original size:25 final size:25
Alignment explanation
Indices: 81302426--81302521 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
81302416 CTAGACATTT
* *
81302426 GGCTCACATGAGCTTCCCGATATAA
1 GGCTCATATGAGCTTCCCGTTATAA
*
81302451 GGCTCATATGAGCTTCCCGTTACTTA
1 GGCTCATATGAGCTTCCCGTTA-TAA
*
81302477 GG-TCATATGAGCTTCCCGTTATAT
1 GGCTCATATGAGCTTCCCGTTATAA
** *
81302501 GGCTCGGAAGAGCTTCCCGTT
1 GGCTCATATGAGCTTCCCGTT
81302522 TACATACTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
24 3 0.05
25 54 0.89
26 4 0.07
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (25 bp):
GGCTCATATGAGCTTCCCGTTATAA
Found at i:81302753 original size:24 final size:24
Alignment explanation
Indices: 81302726--81302773 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81302716 TTGTAATATG
81302726 AGATAGATAATACATGTATGTTAA
1 AGATAGATAATACATGTATGTTAA
*
81302750 AGATGGATAATACATGTATGTTAA
1 AGATAGATAATACATGTATGTTAA
81302774 TCTTACCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (24 bp):
AGATAGATAATACATGTATGTTAA
Found at i:81318403 original size:24 final size:24
Alignment explanation
Indices: 81318286--81318419 Score: 80
Period size: 25 Copynumber: 5.5 Consensus size: 24
81318276 CATAGAAATG
* *
81318286 AAAT-AATAATATAAAACAACTTA
1 AAATAAATAATATAAAGCAATTTA
* * *
81318309 AAACAAATAATA-AGA-TAATTTTAA
1 AAATAAATAATATAAAGCAA-TTT-A
* *
81318333 AAACATAATATATATAAAG--GTTTA
1 AAATA-AATA-ATATAAAGCAATTTA
* * *
81318357 GAATAGATACTATAAAAGCAATTTA
1 AAATAAATAATAT-AAAGCAATTTA
81318382 AAATAAATAATATAAAGCAATTTAA
1 AAATAAATAATATAAAGCAATTT-A
*
81318407 AAATCAATAATAT
1 AAATAAATAATAT
81318420 TCAAAAAATA
Statistics
Matches: 85, Mismatches: 15, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
22 5 0.06
23 14 0.16
24 27 0.32
25 34 0.40
26 3 0.04
27 2 0.02
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAGCAATTTA
Found at i:81318655 original size:27 final size:25
Alignment explanation
Indices: 81318623--81318720 Score: 81
Period size: 30 Copynumber: 3.7 Consensus size: 25
81318613 TGAAAGTAGT
81318623 TAACATATATAAAATAATATAACTAAA
1 TAACATATATAAAAT-ATATAA-TAAA
*
81318650 TAACATATA-AAAATTTATAATAAA
1 TAACATATATAAAATATATAATAAA
* * *
81318674 TAATATATATATCAAGTAGTTTAAAATAAA
1 TAACATATATA--AA--A-TATATAATAAA
*
81318704 TAACATATAAAAAATAT
1 TAACATATATAAAATAT
81318721 TTAAAATAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
24 12 0.20
25 8 0.14
26 6 0.10
27 11 0.19
28 2 0.03
29 1 0.02
30 19 0.32
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (25 bp):
TAACATATATAAAATATATAATAAA
Found at i:81318723 original size:27 final size:27
Alignment explanation
Indices: 81318623--81318744 Score: 99
Period size: 27 Copynumber: 4.5 Consensus size: 27
81318613 TGAAAGTAGT
* * *
81318623 TAACATATATAAAATA-ATATAACTAAA
1 TAACATATAAAAAATATTTA-AAATAAA
*
81318650 TAACATAT--AAAA-ATTTATAATAAA
1 TAACATATAAAAAATATTTAAAATAAA
* * *
81318674 TAATATATATATCAAGTAGTTTAAAATAAA
1 TAACATATA-A-AAAATA-TTTAAAATAAA
81318704 TAACATATAAAAAATATTTAAAATAAA
1 TAACATATAAAAAATATTTAAAATAAA
* *
81318731 TAATATGTAAAAAA
1 TAACATATAAAAAA
81318745 AATTAAAGAA
Statistics
Matches: 76, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
24 13 0.17
25 6 0.08
27 31 0.41
28 6 0.08
29 2 0.03
30 18 0.24
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.32
Consensus pattern (27 bp):
TAACATATAAAAAATATTTAAAATAAA
Found at i:81319773 original size:15 final size:18
Alignment explanation
Indices: 81319739--81319775 Score: 53
Period size: 15 Copynumber: 2.2 Consensus size: 18
81319729 TGTAAAAATA
81319739 AAAATGAAAAGAATCAAG
1 AAAATGAAAAGAATCAAG
81319757 AAAAT-AAAA-AA-CAAG
1 AAAATGAAAAGAATCAAG
81319772 AAAA
1 AAAA
81319776 GATCAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
16 2 0.11
17 4 0.21
18 5 0.26
ACGTcount: A:0.76, C:0.05, G:0.11, T:0.08
Consensus pattern (18 bp):
AAAATGAAAAGAATCAAG
Found at i:81320453 original size:44 final size:44
Alignment explanation
Indices: 81320403--81321025 Score: 222
Period size: 44 Copynumber: 13.6 Consensus size: 44
81320393 CTTTGATTCA
* * * *
81320403 CTCCACTACAACTTCAGGGAGATAATAATTATAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTG
* * * * * ** *
81320447 CCCCACTGCAATTTCAGGGGGACAAGGTTTGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTG
* * * *
81320491 CTCTACTGCAACTTCAGAGAGATAAGATTTGCATCTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTG
* ** *
81320535 CTCCACTGCAACTTCAGGGAGATAAGGTTAATG-GCCTTC-ATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATT--TGTAACTTCAACCTG
** *
81320579 CTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGA-TTTGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA-ACTTCAACCTG
* * * * *
81320629 AC-CCACTGCGACTTCAAAGG-TATAAGACTTGTAACTCGTAGCTTTAACCTA
1 -CTCCACTGCAACTTC-AGGGAGATAAGATTTGTAACT--T--C---AACCTG
* * * * ** *
81320680 TTCTACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTCAACCTG
* * * *
81320725 CCCCACTGCAATTTC-GGGAAGGGCTAAGACTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGG-A--GATAAGATTTGTAACTTCAACCTG
* * * **
81320771 CTCCACTGTAACTTCAGGGAGATAAGATTCGTCATGGTAGATTTGATTC-G
1 CTCCACTGCAACTTCAGGGAGATAAGA-T--T--T-GTA-ACTTCAACCTG
** * * * * * *
81320821 ACT-TGCTGCAACTTCAGAGG-TATAGGATTTATAGCTTTAATCTG
1 -CTCCACTGCAACTTCAG-GGAGATAAGATTTGTAACTTCAACCTG
** * * * * *
81320865 CTTTACTGCAACTTTAGAGAGATAAGATTCGCTATCTT-AAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTCAA-CCTG
* *
81320910 CTCCACTGTAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTG
* * * * ** * *
81320954 CTCCACTGTAACTTCAAGGAGATAAGGTTAGTGGCTTCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTG
* * * *
81320998 TTCAATTGCAACTTCAGGGAGACAAGAT
1 CTCCACTGCAACTTCAGGGAGATAAGAT
81321026 CTACAATCTT
Statistics
Matches: 425, Mismatches: 113, Indels: 82
0.69 0.18 0.13
Matches are distributed among these distances:
43 9 0.02
44 224 0.53
45 58 0.14
46 25 0.06
47 16 0.04
48 1 0.00
49 4 0.01
50 48 0.11
51 36 0.08
52 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAACCTG
Found at i:81320534 original size:88 final size:88
Alignment explanation
Indices: 81320403--81320607 Score: 259
Period size: 88 Copynumber: 2.3 Consensus size: 88
81320393 CTTTGATTCA
* * * * ** * * *
81320403 CTCCACTACAACTTCAGGGAGATAATAATTATAACTTCAACCTGCCCCACTGCAATTTCAGGGGG
1 CTCCACTGCAACTTCAGAGAGATAAGATTTGCATCTTCAACCTGCCCCACTGCAACTTCAGGGAG
**
81320468 ACAAGGTTTGTGG-CTTCAATCTG
66 ACAAGGTTAATGGCCTTC-ATCTG
* *
81320491 CTCTACTGCAACTTCAGAGAGATAAGATTTGCATCTTCAACCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGAGAGATAAGATTTGCATCTTCAACCTGCCCCACTGCAACTTCAGGGAG
*
81320556 ATAAGGTTAATGGCCTTCATCTG
66 ACAAGGTTAATGGCCTTCATCTG
*
81320579 CTCCACTGCAACTTCAGGGAGATAAGATT
1 CTCCACTGCAACTTCAGAGAGATAAGATT
81320608 CACCATGATA
Statistics
Matches: 100, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
88 96 0.96
89 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGAGAGATAAGATTTGCATCTTCAACCTGCCCCACTGCAACTTCAGGGAG
ACAAGGTTAATGGCCTTCATCTG
Found at i:81320816 original size:192 final size:183
Alignment explanation
Indices: 81320494--81320979 Score: 491
Period size: 192 Copynumber: 2.6 Consensus size: 183
81320484 CAATCTGCTC
* * * * *
81320494 TACTGCAACTTCAGAGAGATAAGATTTGC-ATCTTCAA-CCTGCTCCACTGCAACTTCAGGGAGA
1 TACTGCAACTTCAGAGAAATAAGATTCGCTATCTT-AAGTCTACCCCACTGCAACTTCAGGGAGA
* * ** * *
81320557 TAAG-GTTAATGGCCTTC-ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGA
65 TAAGACTT-GT-AACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATGATAGA
*
81320620 TTTGA-TCTGACCCACTGCGACTTCAAAGGTATAAGACTTGTAACTCGTAGCTTTAACCT-ATT
128 TTTGATTC-GACCCACTGCAACTTCAAAGGTATAAGA-TT-T-A----TAGCTTTAACCTGATT
* * * *
81320682 CTACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACCCCACTGCAATTTC-GGGAAG
1 -TACTGCAACTTCAGAGAAATAAGATTCGCTATCTTAAGTCTACCCCACTGCAACTTCAGGG-A-
* ** *
81320746 GGCTAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCGTCATGGTAG
63 -GATAAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATGATAG
*** * * * *
81320811 ATTTGATTCGACTTGCTGCAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTT
127 ATTTGATTCGACCCACTGCAACTTCAAAGGTATAAGATTTATAGCTTTAACCTGATT
* * * * *
81320868 TACTGCAACTTTAGAGAGATAAGATTCGCTATCTTAAGTCTGCTCCACTGTAACTTCAGGGAGAT
1 TACTGCAACTTCAGAGAAATAAGATTCGCTATCTTAAGTCTACCCCACTGCAACTTCAGGGAGAT
*
81320933 AAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAAGGAGATAAG
66 AAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAG
81320980 GTTAGTGGCT
Statistics
Matches: 251, Mismatches: 36, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
183 48 0.19
185 60 0.24
186 5 0.02
189 32 0.13
190 22 0.09
191 6 0.02
192 74 0.29
193 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (183 bp):
TACTGCAACTTCAGAGAAATAAGATTCGCTATCTTAAGTCTACCCCACTGCAACTTCAGGGAGAT
AAGACTTGTAACTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGATTCACCATGATAGATTT
GATTCGACCCACTGCAACTTCAAAGGTATAAGATTTATAGCTTTAACCTGATT
Found at i:81321150 original size:131 final size:131
Alignment explanation
Indices: 81320988--81321289 Score: 424
Period size: 131 Copynumber: 2.3 Consensus size: 131
81320978 AGGTTAGTGG
* * * * * * *
81320988 CTTCGATCTGTTCAATTGCAACTTCAGGGAGACAAGATCTACAATCTTTAGCCTATTCCACTACT
1 CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCAACCTACTCCACTACT
* * * *
81321053 GCTTAGAGAGATAGGATGGTGGCTTAAATCTGTTCCACTACTGGTTAGGGAGACAAGATTCGCCG
66 GCTTAGAGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTCACCG
81321118 T
131 T
* * *
81321119 CTTTGACCTGTTCCACTGCAACTTCAAGGAGACAAAATCTACAATCTTCAACCTACTCCAGTACT
1 CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCAACCTACTCCACTACT
* *
81321184 GCTTAGGGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTTACCG
66 GCTTAGAGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTCACCG
81321249 T
131 T
** * *
81321250 CTTCGATTTGTTTCACTGTAACTTCAAGGAGACAAGATCT
1 CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCT
81321290 GTAAATTTAC
Statistics
Matches: 149, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
131 149 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (131 bp):
CTTCGACCTGTTCCACTGCAACTTCAAGGAGACAAGATCTACAATCTTCAACCTACTCCACTACT
GCTTAGAGAGATAGGAGGGTGGCTTAAATCTGCTCCACTACTGGTTAGAGAGACAAGATTCACCG
T
Found at i:81325499 original size:12 final size:12
Alignment explanation
Indices: 81325477--81325527 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
81325467 TGTTAGCCAG
81325477 TTGCTCTTGCAT
1 TTGCTCTTGCAT
*
81325489 TTG-TGCTTGCAA
1 TTGCT-CTTGCAT
81325501 TTGCTCTTGCAT
1 TTGCTCTTGCAT
*
81325513 AT-CTCTTTGCAT
1 TTGCTC-TTGCAT
81325525 TTG
1 TTG
81325528 TTCCAATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 26 0.84
13 1 0.03
ACGTcount: A:0.12, C:0.22, G:0.18, T:0.49
Consensus pattern (12 bp):
TTGCTCTTGCAT
Found at i:81329529 original size:21 final size:22
Alignment explanation
Indices: 81329485--81329529 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
81329475 AGTATAAATA
*
81329485 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
81329508 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
81329529 T
1 T
81329530 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:81341575 original size:19 final size:19
Alignment explanation
Indices: 81341553--81341599 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
81341543 CTCAAAGCAA
81341553 GGACAAAAGTTCAACCAAG
1 GGACAAAAGTTCAACCAAG
81341572 GGACAAAAGTTCAACCAAG
1 GGACAAAAGTTCAACCAAG
*
81341591 GGGCAAAAG
1 GGACAAAAG
81341600 AGTGATTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.47, C:0.19, G:0.26, T:0.09
Consensus pattern (19 bp):
GGACAAAAGTTCAACCAAG
Found at i:81342028 original size:73 final size:72
Alignment explanation
Indices: 81341908--81342103 Score: 304
Period size: 72 Copynumber: 2.7 Consensus size: 72
81341898 CGATGTTTTT
* **
81341908 ATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
1 ATTTCTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAG-CACGCTGA
81341972 GGTATTTTCA
63 GGTATTTTCA
81341982 ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGCACGCTGAGGT
1 ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGCACGCTGAGGT
*
81342047 ATTTTGA
66 ATTTTCA
* *
81342054 ATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCT
1 ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
81342104 TTTAATTTCT
Statistics
Matches: 115, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
72 65 0.57
73 38 0.33
74 7 0.06
75 5 0.04
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
ATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGCACGCTGAGGT
ATTTTCA
Found at i:81342135 original size:54 final size:55
Alignment explanation
Indices: 81342048--81342157 Score: 186
Period size: 54 Copynumber: 2.0 Consensus size: 55
81342038 CGCTGAGGTA
81342048 TTTTGAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
1 TTTTGAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
* * *
81342103 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTGAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
81342157 T
1 T
81342158 CGGGACACGC
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 48 0.92
55 4 0.08
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (55 bp):
TTTTGAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
Found at i:81342218 original size:127 final size:127
Alignment explanation
Indices: 81341976--81342373 Score: 672
Period size: 127 Copynumber: 3.1 Consensus size: 127
81341966 CGCTGAGGTA
*
81341976 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAG-CACG
1 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
* * *
81342040 CTGAGGTATTTTGAATTTCTATTTTTCAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCC
65 CTGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
**
81342103 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
*
81342168 TGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
66 TGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
* *
81342230 TTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATACACGC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
*
81342295 TGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 TGAGGTATTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
81342359 TTTTAATTTCTGTTT
1 TTTTAATTTCTGTTT
81342374 GAGGTGAGTT
Statistics
Matches: 254, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
126 52 0.20
127 153 0.60
129 49 0.19
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (127 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:81342262 original size:54 final size:55
Alignment explanation
Indices: 81342175--81342284 Score: 195
Period size: 54 Copynumber: 2.0 Consensus size: 55
81342165 CGCTGAGGAA
*
81342175 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
*
81342230 TTTT-AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
81342284 T
1 T
81342285 CAATACACGC
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
54 49 0.92
55 4 0.08
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (55 bp):
TTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:81342492 original size:53 final size:53
Alignment explanation
Indices: 81342412--81342515 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
81342402 AGGTATTTTC
81342412 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTAAGTTGAGCCTTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTAAGTTGAGCCTTT
* * *
81342465 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTAAGTTGAGCCT
81342516 CAATACACGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (53 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAAGTAAGTTGAGCCTTT
Found at i:81342546 original size:231 final size:232
Alignment explanation
Indices: 81342142--81342621 Score: 854
Period size: 231 Copynumber: 2.1 Consensus size: 232
81342132 CATATTGCGA
** *
81342142 GAGGTGAGTTGAGCCTCGGGACACGCTGAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
1 GAGGTGAGTTGAGCCTCAAGACACGCTAAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
* *
81342207 TATTACGAGAGGTGAGTTGAGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAG
66 TATTACGAGAAGTAAGTTGAGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAG
*
81342272 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAT
131 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAA
81342337 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
196 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
* * *
81342374 GAGGTGAGTTGAGCTTCAATACACGCTAAGGTATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
1 GAGGTGAGTTGAGCCTCAAGACACGCTAAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
*
81342439 TATTACGAGAAGTAAGTTGAGCC-TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG
66 TATTACGAGAAGTAAGTTGAGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAG
81342503 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAA
131 GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAA
81342568 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
196 ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
*
81342605 GAGGTGAGTTCAGCCTC
1 GAGGTGAGTTGAGCCTC
81342622 GGGTCACATG
Statistics
Matches: 236, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
231 156 0.66
232 80 0.34
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (232 bp):
GAGGTGAGTTGAGCCTCAAGACACGCTAAGGAATTTTCAATTTCTGTTTTTCAAAAATCAACTCA
TATTACGAGAAGTAAGTTGAGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAA
ATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTT
Found at i:81344939 original size:21 final size:22
Alignment explanation
Indices: 81344895--81344939 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
81344885 AGTATAAATA
*
81344895 TATATACATATATCATATAAGTT
1 TATATACA-ATATCATACAAGTT
*
81344918 TATATAC-ATATCATACATGTT
1 TATATACAATATCATACAAGTT
81344939 T
1 T
81344940 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATACAATATCATACAAGTT
Found at i:81345987 original size:24 final size:27
Alignment explanation
Indices: 81345934--81345995 Score: 85
Period size: 24 Copynumber: 2.4 Consensus size: 27
81345924 TGAAAGTAGT
81345934 TAACATATATAAAATAATATAACTAAA
1 TAACATATATAAAATAATATAACTAAA
*
81345961 TAACATATA-AAAAT-TTAT-ACTAAA
1 TAACATATATAAAATAATATAACTAAA
*
81345985 TAATATATATA
1 TAACATATATA
81345996 TCAAGTAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 14 0.44
25 4 0.12
26 5 0.16
27 9 0.28
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (27 bp):
TAACATATATAAAATAATATAACTAAA
Found at i:81346023 original size:28 final size:28
Alignment explanation
Indices: 81346004--81346064 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
81345994 TATCAAGTAG
81346004 TTTAAAATAAATAACATATAAAAAAATA
1 TTTAAAATAAATAACATATAAAAAAATA
* *
81346032 TTTAAAATAAATAATATGTAAAAAAA-A
1 TTTAAAATAAATAACATATAAAAAAATA
81346059 -TTAAAA
1 TTTAAAA
81346065 GAACTAATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 6 0.19
27 1 0.03
28 24 0.77
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (28 bp):
TTTAAAATAAATAACATATAAAAAAATA
Found at i:81346053 original size:16 final size:15
Alignment explanation
Indices: 81346005--81346059 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
81345995 ATCAAGTAGT
*
81346005 TTAAAATAAATAACA
1 TTAAAATAAATAATA
81346020 TATAAAA-AAAT-AT-
1 T-TAAAATAAATAATA
81346033 TTAAAATAAATAATA
1 TTAAAATAAATAATA
*
81346048 TGTAAAAAAAAT
1 T-TAAAATAAAT
81346060 TAAAAGAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
12 5 0.15
13 5 0.15
14 3 0.09
15 6 0.18
16 14 0.42
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (15 bp):
TTAAAATAAATAATA
Found at i:81347455 original size:12 final size:12
Alignment explanation
Indices: 81347438--81347467 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
81347428 GGCTCGGTAA
81347438 TTGGGTCTGAGT
1 TTGGGTCTGAGT
81347450 TTGGGTCTGAGT
1 TTGGGTCTGAGT
81347462 TTGGGT
1 TTGGGT
81347468 TTATATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.07, G:0.43, T:0.43
Consensus pattern (12 bp):
TTGGGTCTGAGT
Found at i:81348228 original size:16 final size:16
Alignment explanation
Indices: 81348190--81348228 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
81348180 TTATTTCTTA
*
81348190 AATTATTTATGAAAAT
1 AATTATTTATAAAAAT
*
81348206 AAGTTATTTTTAAAAAT
1 AA-TTATTTATAAAAAT
81348223 AATTAT
1 AATTAT
81348229 AAGTATGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (16 bp):
AATTATTTATAAAAAT
Found at i:81348338 original size:28 final size:27
Alignment explanation
Indices: 81348290--81348350 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
81348280 TGTTTAGACT
* *
81348290 AAATTTTTAAAAAATATTATTTTTTGA
1 AAATTTTTAAAAAAGACTATTTTTTGA
* *
81348317 AATATTTTTAAAATAGACTATTTTTTTA
1 AA-ATTTTTAAAAAAGACTATTTTTTGA
81348345 AAATTT
1 AAATTT
81348351 ATGAGAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (27 bp):
AAATTTTTAAAAAAGACTATTTTTTGA
Found at i:81349086 original size:50 final size:50
Alignment explanation
Indices: 81348993--81349088 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
81348983 ATTTGAATAG
* * *
81348993 TTAAATGGCAATTTTGTAACTTTTCATAAATAGATGATTAAAAAATATAA
1 TTAAATGACAATTTTATAACTTTTCATAAATAGATGATAAAAAAATATAA
* *
81349043 TTAAATGACTATTTTATAACCTTTT-ATAATTA-AGTGATAAAAAAAT
1 TTAAATGACAATTTTATAA-CTTTTCATAAATAGA-TGATAAAAAAAT
81349089 TACCTTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
49 1 0.03
50 33 0.85
51 5 0.13
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (50 bp):
TTAAATGACAATTTTATAACTTTTCATAAATAGATGATAAAAAAATATAA
Found at i:81350496 original size:14 final size:14
Alignment explanation
Indices: 81350477--81350503 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81350467 TTGGACGAGT
81350477 GGGAACGATTGAAA
1 GGGAACGATTGAAA
81350491 GGGAACGATTGAA
1 GGGAACGATTGAA
81350504 CCATTGAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.37, T:0.15
Consensus pattern (14 bp):
GGGAACGATTGAAA
Found at i:81354369 original size:13 final size:13
Alignment explanation
Indices: 81354353--81354380 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81354343 AACTTGAAAT
81354353 TCTATCAATTTAA
1 TCTATCAATTTAA
81354366 TCTATCAATTTAA
1 TCTATCAATTTAA
81354379 TC
1 TC
81354381 CCTAACACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (13 bp):
TCTATCAATTTAA
Found at i:81354567 original size:8 final size:9
Alignment explanation
Indices: 81354552--81354598 Score: 71
Period size: 8 Copynumber: 5.3 Consensus size: 9
81354542 AACCCTAAAT
81354552 TTTCCTTTC
1 TTTCCTTTC
81354561 TTT-CTTTC
1 TTTCCTTTC
81354569 TTT-CTTTC
1 TTTCCTTTC
81354577 TTTCCTTTCC
1 TTTCCTTT-C
81354587 TTTCCTTTC
1 TTTCCTTTC
81354596 TTT
1 TTT
81354599 TTCCCTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 16 0.44
9 11 0.31
10 9 0.25
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTCCTTTC
Found at i:81354586 original size:5 final size:4
Alignment explanation
Indices: 81354556--81354598 Score: 59
Period size: 4 Copynumber: 10.0 Consensus size: 4
81354546 CTAAATTTTC
81354556 CTTT CTTT CTTT CTTT CTTT CTTT CCTTT CCTTT CCTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT -CTTT -CTTT -CTTT CTTT
81354599 TTCCCTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 24 0.63
5 14 0.37
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (4 bp):
CTTT
Found at i:81354672 original size:5 final size:5
Alignment explanation
Indices: 81354662--81354724 Score: 126
Period size: 5 Copynumber: 12.6 Consensus size: 5
81354652 ATTAAACTAT
81354662 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
81354712 TATAA TATAA TAT
1 TATAA TATAA TAT
81354725 TTTATATATA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 58 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:81357437 original size:40 final size:40
Alignment explanation
Indices: 81357393--81357470 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
81357383 TATGGTACCT
* *
81357393 TATGGTGTGTAGGGAT-GGATGGGATGATTATATCCCCATA
1 TATGGTATGCAGGGATAGG-TGGGATGATTATATCCCCATA
* *
81357433 TATGGTATGCAGGGATAGGTGGGTTGATTTTATCCCCA
1 TATGGTATGCAGGGATAGGTGGGATGATTATATCCCCA
81357471 CATAGTGCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.23, C:0.12, G:0.32, T:0.33
Consensus pattern (40 bp):
TATGGTATGCAGGGATAGGTGGGATGATTATATCCCCATA
Found at i:81361183 original size:44 final size:44
Alignment explanation
Indices: 81361111--81361197 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
81361101 TGATTCGTAG
* *
81361111 AAGGGTTCTCCTTGATTGCTGTGCCGTTGACTAAGTTACTGCGA
1 AAGGGTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGA
*
81361155 AAGGGTTCTCCTTGATCGCTGCGTCGTTGACTAAGTTACTGCG
1 AAGGGTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCG
81361198 TAAATGAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (44 bp):
AAGGGTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGA
Found at i:81361211 original size:44 final size:44
Alignment explanation
Indices: 81361115--81361208 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
81361105 TCGTAGAAGG
* * *
81361115 GTTCTCCTTGATTGCTGTGCCGTTGACTAAGTTACTGCGAAAGG
1 GTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGAAAGA
*
81361159 GTTCTCCTTGATCGCTGCGTCGTTGACTAAGTTACTGCGTAAATGA
1 GTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCG-AAA-GA
81361205 GTTC
1 GTTC
81361209 CTTTTGCCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 36 0.82
45 3 0.07
46 5 0.11
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (44 bp):
GTTCTCCTTGATCGCTGCGCCGTTGACTAAGTTACTGCGAAAGA
Found at i:81362474 original size:40 final size:40
Alignment explanation
Indices: 81362419--81362496 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
81362409 TGCGGTACCT
* *
81362419 TATGGTGTGTAGGGAT-GGATGGGATGATTGTATCCCCATA
1 TATGGTATGTAGGGATAGG-TGGGACGATTGTATCCCCATA
*
81362459 TATGGTATGTAGGGATAGGTGGGACGATTTTATCCCCA
1 TATGGTATGTAGGGATAGGTGGGACGATTGTATCCCCA
81362497 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.32
Consensus pattern (40 bp):
TATGGTATGTAGGGATAGGTGGGACGATTGTATCCCCATA
Found at i:81365059 original size:23 final size:22
Alignment explanation
Indices: 81365003--81365061 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
81364993 TTGAGGTTTC
*
81365003 TTTTAT-CTTATTATTTTTATA
1 TTTTATACATATTATTTTTATA
** *
81365024 TTTTGCACAATATTTTTTTATATA
1 TTTTATAC-ATATTATTTT-TATA
81365048 TTTTATACATATTA
1 TTTTATACATATTA
81365062 GTATACATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
21 4 0.14
22 1 0.04
23 13 0.46
24 10 0.36
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTATACATATTATTTTTATA
Found at i:81366702 original size:17 final size:17
Alignment explanation
Indices: 81366682--81366714 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81366672 CCCAATAAAA
*
81366682 ACAATAAACCAAAATAC
1 ACAAAAAACCAAAATAC
81366699 ACAAAAAACCAAAATA
1 ACAAAAAACCAAAATA
81366715 ATTAAATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.21, G:0.00, T:0.09
Consensus pattern (17 bp):
ACAAAAAACCAAAATAC
Found at i:81367949 original size:29 final size:29
Alignment explanation
Indices: 81367917--81367973 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
81367907 TTTTAATCCT
*
81367917 TTTTAAATTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATTTATTTA
*
81367946 TTTTAAATATTTTATATATTATTTATTT
1 TTTTAAATATTTTATATATAATTTATTT
81367974 TTACTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATTTATTTA
Found at i:81367974 original size:16 final size:16
Alignment explanation
Indices: 81367926--81368155 Score: 86
Period size: 17 Copynumber: 14.0 Consensus size: 16
81367916 TTTTTAAATT
*
81367926 TTTTATATATAATTTA
1 TTTTATATATTATTTA
**
81367942 -TTTAT-T-TTAAATA
1 TTTTATATATTATTTA
81367955 TTTTATATATTATTTA
1 TTTTATATATTATTTA
81367971 TTTTTACTATAAACATTATTTA
1 -TTTTA-TAT----ATTATTTA
* * ** *
81367993 -TATAAATAAAAATTA
1 TTTTATATATTATTTA
* *
81368008 TTATATATATTATTTT
1 TTTTATATATTATTTA
*
81368024 TATTTATGTATTATTATA
1 T-TTTATATATTATT-TA
*
81368042 TATATTATTTATTATATTA
1 T-T-TTATATATTAT-TTA
*
81368061 TTTATATATTTTATTATA
1 TTT-TATATATTATT-TA
*
81368079 TATTATATCA-T-TTTA
1 TTTTATAT-ATTATTTA
*
81368094 TTTTATATATTATTCA
1 TTTTATATATTATTTA
*
81368110 TTATA-ATATT-TTTA
1 TTTTATATATTATTTA
81368124 TTTTAT-TATATATTTTA
1 TTTTATATAT-TA-TTTA
81368141 TTATT-T-TATTATTTA
1 TT-TTATATATTATTTA
81368156 ATATTATGTA
Statistics
Matches: 162, Mismatches: 28, Indels: 49
0.68 0.12 0.21
Matches are distributed among these distances:
13 4 0.02
14 17 0.10
15 31 0.19
16 27 0.17
17 34 0.21
18 22 0.14
19 15 0.09
20 4 0.02
22 8 0.05
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTATATATTATTTA
Found at i:81368007 original size:19 final size:20
Alignment explanation
Indices: 81367979--81368016 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
81367969 TATTTTTACT
*
81367979 ATAAACATTATT-TATATAA
1 ATAAAAATTATTATATATAA
81367998 ATAAAAATTATTATATATA
1 ATAAAAATTATTATATATA
81368017 TTATTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAAAAATTATTATATATAA
Found at i:81368020 original size:9 final size:9
Alignment explanation
Indices: 81368006--81368086 Score: 69
Period size: 9 Copynumber: 8.9 Consensus size: 9
81367996 AAATAAAAAT
81368006 TATTATATA
1 TATTATATA
* *
81368015 TATTATTTT
1 TATTATATA
*
81368024 TATTTATGTA
1 TA-TTATATA
81368034 TTATTATATA
1 -TATTATATA
81368044 TATTAT-T-
1 TATTATATA
81368051 TATTATAT-
1 TATTATATA
81368059 TATTTATATA
1 TA-TTATATA
*
81368069 TTTTATTATA
1 TATTA-TATA
81368079 TATTATAT
1 TATTATAT
81368087 CATTTTATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
7 6 0.10
8 4 0.07
9 27 0.46
10 20 0.34
11 2 0.03
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (9 bp):
TATTATATA
Found at i:81368021 original size:12 final size:12
Alignment explanation
Indices: 81368004--81368167 Score: 106
Period size: 12 Copynumber: 14.5 Consensus size: 12
81367994 ATAAATAAAA
81368004 ATTAT-TATATAT
1 ATTATATATAT-T
81368016 ATTAT-T-T-TT
1 ATTATATATATT
*
81368025 ATT-TATGTATT
1 ATTATATATATT
81368036 ATTATATATATT
1 ATTATATATATT
81368048 ATT-TATTATATT
1 ATTATA-TATATT
81368060 ATT-TATATATT
1 ATTATATATATT
81368071 -TTAT-TATA-T
1 ATTATATATATT
*
81368080 ATTATATCATTTT
1 ATTATAT-ATATT
*
81368093 ATTTTATATATT
1 ATTATATATATT
*
81368105 ATTCAT-TATAAT
1 ATT-ATATATATT
* *
81368117 ATT-TTTATTTT
1 ATTATATATATT
*
81368128 ATTATATATTTT
1 ATTATATATATT
*
81368140 ATTAT-TTTATT
1 ATTATATATATT
81368151 ATT-TA-ATATT
1 ATTATATATATT
81368161 ATGTATA
1 AT-TATA
81368168 ATTTTAAAAA
Statistics
Matches: 124, Mismatches: 12, Indels: 32
0.74 0.07 0.19
Matches are distributed among these distances:
8 1 0.01
9 6 0.05
10 20 0.16
11 31 0.25
12 58 0.47
13 8 0.06
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (12 bp):
ATTATATATATT
Found at i:81368094 original size:10 final size:9
Alignment explanation
Indices: 81368026--81368159 Score: 75
Period size: 10 Copynumber: 14.8 Consensus size: 9
81368016 ATTATTTTTA
*
81368026 TTTATGTAT
1 TTTATATAT
81368035 TATTATATAT
1 T-TTATATAT
* *
81368045 ATTATTTAT
1 TTTATATAT
*
81368054 TATAT-TA-
1 TTTATATAT
81368061 TTTATATAT
1 TTTATATAT
81368070 TTTATTATAT
1 TTTA-TATAT
*
81368080 ATTATATCAT
1 TTTATAT-AT
81368090 TTTAT-T-T
1 TTTATATAT
*
81368097 TATATATTAT
1 TTTATA-TAT
81368107 TCATTATAATAT
1 T--TTAT-ATAT
*
81368119 TTT-TATTT
1 TTTATATAT
81368127 TATTATATAT
1 T-TTATATAT
81368137 TTTAT-TAT
1 TTTATATAT
81368145 TTTAT-TAT
1 TTTATATAT
*
81368153 TTAATAT
1 TTTATAT
81368160 TATGTATAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
7 9 0.09
8 23 0.23
9 28 0.29
10 30 0.31
12 7 0.07
13 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTATATAT
Found at i:81368105 original size:50 final size:48
Alignment explanation
Indices: 81368046--81368173 Score: 120
Period size: 50 Copynumber: 2.6 Consensus size: 48
81368036 ATTATATATA
*
81368046 TTATTTATTATATTATTTATATATTTTATTATATATTATATCATTTTATT-
1 TTATATATTATATTATTTATATATTTTATT-T-TATTATAT-ATTTTATTA
*
81368096 TTATATATTAT-TCA-TTATAATATTTTTATTTTATTATATATTTTATTA
1 TTATATATTATATTATTTAT-ATA-TTTTATTTTATTATATATTTTATTA
* *
81368144 TTTTATTATTTAATATTATGTATA-ATTTTA
1 TTATA-TA-TT-ATATTATTTATATATTTTA
81368174 AAAATTTGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
47 8 0.12
48 16 0.25
49 8 0.12
50 24 0.37
51 3 0.05
52 3 0.05
53 3 0.05
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (48 bp):
TTATATATTATATTATTTATATATTTTATTTTATTATATATTTTATTA
Found at i:81368133 original size:55 final size:57
Alignment explanation
Indices: 81368034--81368162 Score: 181
Period size: 55 Copynumber: 2.3 Consensus size: 57
81368024 TATTTATGTA
* *
81368034 TTATTATATATATTATTTATTATATTATTTATATATTTTATTATATATTATATCATT
1 TTATTATATATATTATTCATTATAATATTTATATATTTTATTATATATTATATCATT
* * *
81368091 TTATTTTATATATTATTCATTATAATATTT-T-TATTTTATTATATATTTTATTATT
1 TTATTATATATATTATTCATTATAATATTTATATATTTTATTATATATTATATCATT
*
81368146 TTATTATTTAATATTAT
1 TTATTATAT-ATATTAT
81368163 GTATAATTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
55 29 0.45
56 8 0.12
57 27 0.42
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (57 bp):
TTATTATATATATTATTCATTATAATATTTATATATTTTATTATATATTATATCATT
Found at i:81368773 original size:66 final size:66
Alignment explanation
Indices: 81368659--81368787 Score: 149
Period size: 66 Copynumber: 2.0 Consensus size: 66
81368649 ATATTTTATG
* * *
81368659 TTTATTATTTTCTATGTTTATTTGCACGACATGTAAATGTATATATTATGTAGTGTA-TATTGTT
1 TTTATTATTTGCTATGTTTATTCGCACGACATGTAAATGTATATATTATATAGTGTAGTATTGTT
81368723 A
66 A
* *
81368724 TTTATTATTTGCTATGTTATATTCGCATGA-A-GTATTAATGTATGA-ATTATATAGTTTAGTAT
1 TTTATTATTTGCTATGTT-TATTCGCACGACATGTA--AATGTAT-ATATTATATAGTGTAGTAT
81368786 TG
62 TG
81368788 ATATCTTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
64 3 0.06
65 18 0.33
66 27 0.50
67 6 0.11
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (66 bp):
TTTATTATTTGCTATGTTTATTCGCACGACATGTAAATGTATATATTATATAGTGTAGTATTGTT
A
Found at i:81370391 original size:34 final size:36
Alignment explanation
Indices: 81370353--81370483 Score: 95
Period size: 36 Copynumber: 3.9 Consensus size: 36
81370343 ATTTATGTTA
* *
81370353 TGATATATCTTTATGT-A-TCATGTAAGTTATGATC
1 TGATATATATTTATATAAGTCATGTAAGTTATGATC
* *
81370387 TGATATATATTTATATAAGTTATGTAAGTTATG-TA
1 TGATATATATTTATATAAGTCATGTAAGTTATGATC
* * * *
81370422 TG-T-TAT-GTGA-AT---T-ATATAAGTTATGATA
1 TGATATATATTTATATAAGTCATGTAAGTTATGATC
* *
81370450 TGATATATATTTATGTAAGTTATGTAAGTTATGA
1 TGATATATATTTATATAAGTCATGTAAGTTATGA
81370484 CATTTATTAT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
27 11 0.15
28 5 0.07
29 1 0.01
30 3 0.04
31 4 0.05
32 3 0.04
33 3 0.04
34 15 0.20
35 5 0.07
36 25 0.33
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.47
Consensus pattern (36 bp):
TGATATATATTTATATAAGTCATGTAAGTTATGATC
Found at i:81370409 original size:27 final size:27
Alignment explanation
Indices: 81370375--81370473 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
81370365 ATGTATCATG
*
81370375 TAAGTTATGATCTGATATATATTTATA
1 TAAGTTATGATATGATATATATTTATA
* *
81370402 TAAGTTATGTAAGTTATGTATGTTATGTGAATTATA
1 TAAGTTATG--A--TATG-A---TATAT-ATTTATA
*
81370438 TAAGTTATGATATGATATATATTTATG
1 TAAGTTATGATATGATATATATTTATA
81370465 TAAGTTATG
1 TAAGTTATG
81370474 TAAGTTATGA
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
27 23 0.40
28 4 0.07
29 1 0.02
31 4 0.07
32 5 0.09
34 1 0.02
35 4 0.07
36 15 0.26
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.47
Consensus pattern (27 bp):
TAAGTTATGATATGATATATATTTATA
Found at i:81370412 original size:36 final size:34
Alignment explanation
Indices: 81370372--81370483 Score: 103
Period size: 36 Copynumber: 3.4 Consensus size: 34
81370362 TTTATGTATC
81370372 ATGTAAGTTATGATCTGATATATATTTATATAAGTT
1 ATGTAAGTTATGAT-TGATATATATTTAT-TAAGTT
* * *
81370408 ATGTAAGTTATG--T-ATGT-TA--TGTGAA-TT
1 ATGTAAGTTATGATTGATATATATTTATTAAGTT
*
81370435 ATATAAGTTATGATATGATATATATTTATGTAAGTT
1 ATGTAAGTTATGAT-TGATATATATTTAT-TAAGTT
81370471 ATGTAAGTTATGA
1 ATGTAAGTTATGA
81370484 CATTTATTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
27 13 0.22
28 2 0.03
29 2 0.03
30 1 0.02
31 5 0.08
32 5 0.08
33 1 0.02
34 2 0.03
35 2 0.03
36 26 0.44
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (34 bp):
ATGTAAGTTATGATTGATATATATTTATTAAGTT
Found at i:81370414 original size:9 final size:9
Alignment explanation
Indices: 81370397--81370482 Score: 77
Period size: 9 Copynumber: 9.6 Consensus size: 9
81370387 TGATATATAT
*
81370397 TTATATAAG
1 TTATGTAAG
81370406 TTATGTAAG
1 TTATGTAAG
*
81370415 TTATGTATG
1 TTATGTAAG
81370424 TTATGTGAA-
1 TTATGT-AAG
*
81370433 TTATATAAG
1 TTATGTAAG
*
81370442 TTATGATATG
1 TTATG-TAAG
* * *
81370452 ATATAT-AT
1 TTATGTAAG
81370460 TTATGTAAG
1 TTATGTAAG
81370469 TTATGTAAG
1 TTATGTAAG
81370478 TTATG
1 TTATG
81370483 ACATTTATTA
Statistics
Matches: 60, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
8 6 0.10
9 47 0.78
10 7 0.12
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:81370418 original size:18 final size:18
Alignment explanation
Indices: 81370397--81370482 Score: 86
Period size: 18 Copynumber: 4.8 Consensus size: 18
81370387 TGATATATAT
81370397 TTATATAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
* *
81370415 TTATGTATGTTATGTGAA-
1 TTATATAAGTTATGT-AAG
*
81370433 TTATATAAGTTATGATATG
1 TTATATAAGTTATG-TAAG
* *
81370452 ATATAT-ATTTATGTAAG
1 TTATATAAGTTATGTAAG
*
81370469 TTATGTAAGTTATG
1 TTATATAAGTTATG
81370483 ACATTTATTA
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
17 7 0.13
18 38 0.72
19 8 0.15
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (18 bp):
TTATATAAGTTATGTAAG
Found at i:81370464 original size:45 final size:46
Alignment explanation
Indices: 81370415--81370530 Score: 134
Period size: 45 Copynumber: 2.6 Consensus size: 46
81370405 GTTATGTAAG
81370415 TTATGTATGTTATGTGAA-TTAT-ATAAGTTATGATATG-ATATATAT
1 TTATGTATGTTATGT-AAGTTATGA-AAGTTATGATATGAATATATAT
* * * *
81370460 TTATGTAAGTTATGTAAGTTATGACATTTATTATATGATATATATAT
1 TTATGTATGTTATGTAAGTTATGAAAGTTATGATATGA-ATATATAT
81370507 TTATGTA--TTATGTAAGTTATGAAA
1 TTATGTATGTTATGTAAGTTATGAAA
81370531 TTTGAACTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
44 2 0.03
45 44 0.71
46 1 0.02
47 15 0.24
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.48
Consensus pattern (46 bp):
TTATGTATGTTATGTAAGTTATGAAAGTTATGATATGAATATATAT
Found at i:81370488 original size:27 final size:27
Alignment explanation
Indices: 81370406--81370490 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
81370396 TTTATATAAG
** *
81370406 TTATGTAAGTTATGTATGTTATGTGAA
1 TTATGTAAGTTATGTATGTTATGACAT
* * *
81370433 TTATATAAGTTATGATATGATAT-ATAT
1 TTATGTAAGTTATG-TATGTTATGACAT
*
81370460 TTATGTAAGTTATGTAAGTTATGACAT
1 TTATGTAAGTTATGTATGTTATGACAT
81370487 TTAT
1 TTAT
81370491 TATATGATAT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 6 0.13
27 34 0.72
28 7 0.15
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.48
Consensus pattern (27 bp):
TTATGTAAGTTATGTATGTTATGACAT
Found at i:81370518 original size:54 final size:53
Alignment explanation
Indices: 81370389--81370527 Score: 154
Period size: 54 Copynumber: 2.5 Consensus size: 53
81370379 TTATGATCTG
* ** *
81370389 ATATATATTTATATAAGTTATGTAAGTTATGTATGTTATGTGAATTATATAAGTT
1 ATATATATTTATAT-A-TTATGTAAGTTATGTAAGTTATGACAATTATATAAGAT
* * *
81370444 ATGATATGATATATAT-TTATGTAAGTTATGTAAGTTATGACATTTATTATATGAT
1 AT-ATAT-ATTTATATATTATGTAAGTTATGTAAGTTATGACAATTA-TATAAGAT
*
81370499 ATATATATTTATGTATTATGTAAGTTATG
1 ATATATATTTATATATTATGTAAGTTATG
81370528 AAATTTGAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
53 6 0.08
54 44 0.62
55 10 0.14
56 4 0.06
57 7 0.10
ACGTcount: A:0.36, C:0.01, G:0.14, T:0.49
Consensus pattern (53 bp):
ATATATATTTATATATTATGTAAGTTATGTAAGTTATGACAATTATATAAGAT
Found at i:81374444 original size:28 final size:29
Alignment explanation
Indices: 81374399--81374454 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
81374389 TCCCTAACCC
*
81374399 CTAACCCTTAACCCCTAAAAACCTAAACT
1 CTAACCCTTAAACCCTAAAAACCTAAACT
*
81374428 CTAA-CCTTAAACCCTAAAAACTTAAAC
1 CTAACCCTTAAACCCTAAAAACCTAAAC
81374455 CATAAAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (29 bp):
CTAACCCTTAAACCCTAAAAACCTAAACT
Found at i:81374453 original size:15 final size:15
Alignment explanation
Indices: 81374405--81374475 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
81374395 ACCCCTAACC
*
81374405 CTTAACCCCTAAAAA
1 CTTAAACCCTAAAAA
* * *
81374420 CCTAAACTCT--AAC
1 CTTAAACCCTAAAAA
81374433 CTTAAACCCTAAAAA
1 CTTAAACCCTAAAAA
*
81374448 CTTAAACCAT-AAAA
1 CTTAAACCCTAAAAA
*
81374462 CATTAAACCTTAAA
1 C-TTAAACCCTAAA
81374476 CCCTAAATCA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
13 10 0.23
14 5 0.12
15 26 0.60
16 2 0.05
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (15 bp):
CTTAAACCCTAAAAA
Found at i:81374455 original size:22 final size:22
Alignment explanation
Indices: 81374430--81374554 Score: 53
Period size: 22 Copynumber: 5.7 Consensus size: 22
81374420 CCTAAACTCT
*
81374430 AACCTTAAACCCTAAAAACTTA
1 AACCTTAAACCCTAAAAACATA
* * * * * *
81374452 AACCATAAAACATTAAACCTTA
1 AACCTTAAACCCTAAAAACATA
* * *
81374474 AACCCTAAATCAT-AAAACAATA
1 AACCTTAAACCCTAAAAAC-ATA
*
81374496 AA--TATCAACCACT-AAAACATA
1 AACCT-TAAACC-CTAAAAACATA
*
81374517 AACCCTAAACCCTAAAATAC-TA
1 AACCTTAAACCCTAAAA-ACATA
* *
81374539 AACATTAAGCCCTAAA
1 AACCTTAAACCCTAAA
81374555 CCGTAAAACA
Statistics
Matches: 78, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 15 0.19
22 61 0.78
23 2 0.03
ACGTcount: A:0.54, C:0.26, G:0.01, T:0.20
Consensus pattern (22 bp):
AACCTTAAACCCTAAAAACATA
Found at i:81374580 original size:29 final size:29
Alignment explanation
Indices: 81374505--81374582 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
81374495 AAATATCAAC
81374505 CACTAAAACA-TAAACCCTAAACCCTAAAA
1 CACT-AAACATTAAACCCTAAACCCTAAAA
* * *
81374534 TACTAAACATTAAGCCCTAAACCGTAAAA
1 CACTAAACATTAAACCCTAAACCCTAAAA
*
81374563 CACTAGAC-TCTAAACCCTAA
1 CACTAAACAT-TAAACCCTAA
81374583 CCATAAACTA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 6 0.15
29 35 0.85
ACGTcount: A:0.49, C:0.29, G:0.04, T:0.18
Consensus pattern (29 bp):
CACTAAACATTAAACCCTAAACCCTAAAA
Found at i:81377170 original size:29 final size:28
Alignment explanation
Indices: 81377137--81377191 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
81377127 GAGTTATACC
*
81377137 GATTTGGCTTCGAGCTATGAATATCAGCT
1 GATTTGGCTTCGAGCCATG-ATATCAGCT
*
81377166 GATTTGGCTTCGGGCCATGATATCAG
1 GATTTGGCTTCGAGCCATGATATCAG
81377192 TACTGTAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (28 bp):
GATTTGGCTTCGAGCCATGATATCAGCT
Found at i:81379645 original size:9 final size:9
Alignment explanation
Indices: 81379629--81379698 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
81379619 GGTATTTTTC
81379629 GGTAATTCG
1 GGTAATTCG
*
81379638 GTTAATTCG
1 GGTAATTCG
*
81379647 GTTAATTCG
1 GGTAATTCG
*
81379656 GTTAATTCG
1 GGTAATTCG
81379665 GGTAATTCG
1 GGTAATTCG
81379674 GGTAATTCG
1 GGTAATTCG
81379683 GGTAATTCG
1 GGTAATTCG
81379692 GGTAATT
1 GGTAATT
81379699 TTTAACCAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:81380418 original size:16 final size:17
Alignment explanation
Indices: 81380397--81380429 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81380387 TAAATTTATC
81380397 ATTTT-ATTGAAATAAT
1 ATTTTAATTGAAATAAT
*
81380413 ATTTTAATTGAGATAAT
1 ATTTTAATTGAAATAAT
81380430 TTTCATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (17 bp):
ATTTTAATTGAAATAAT
Found at i:81384726 original size:29 final size:30
Alignment explanation
Indices: 81384644--81384726 Score: 84
Period size: 29 Copynumber: 2.8 Consensus size: 30
81384634 GATCATGTTA
**
81384644 TATTTTAAATATTTTTAAAA-AATAATATT
1 TATTTTATTTATTTTTAAAATAATAATATT
*
81384673 TATTTTATTT-TGTTTTAATATTAATAAT-TT
1 TATTTTATTTAT-TTTTAA-AATAATAATATT
81384703 TA-TTTATTTATTTATTAAAATAAT
1 TATTTTATTTATTT-TTAAAATAAT
81384727 TTATATAGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
28 1 0.02
29 28 0.62
30 10 0.22
31 6 0.13
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (30 bp):
TATTTTATTTATTTTTAAAATAATAATATT
Found at i:81387419 original size:20 final size:21
Alignment explanation
Indices: 81387396--81387442 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
81387386 GTCCACATCA
*
81387396 ATTTAATATTAAA-GAATAAT
1 ATTTAATATCAAACGAATAAT
** *
81387416 ATTTTCTATCAAACTAATAAT
1 ATTTAATATCAAACGAATAAT
81387437 ATTTAA
1 ATTTAA
81387443 ATATAAAATA
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTAATATCAAACGAATAAT
Found at i:81387489 original size:15 final size:15
Alignment explanation
Indices: 81387466--81387496 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81387456 TATATTAATT
*
81387466 TAATTAAATATTTTA
1 TAATAAAATATTTTA
81387481 TAATAAAATATTTTA
1 TAATAAAATATTTTA
81387496 T
1 T
81387497 TTTATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATAAAATATTTTA
Found at i:81387575 original size:19 final size:19
Alignment explanation
Indices: 81387538--81387580 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
81387528 TTATACTAAA
*
81387538 TTATATTAAAAGATTTTTT
1 TTATATTAAAAGATATTTT
**
81387557 TTATATTAAATTATATTTT
1 TTATATTAAAAGATATTTT
*
81387576 ATATA
1 TTATA
81387581 AAAGATTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTATATTAAAAGATATTTT
Found at i:81401140 original size:15 final size:15
Alignment explanation
Indices: 81401117--81401147 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81401107 TATATTAATT
*
81401117 TAATTAAATATTTTA
1 TAATAAAATATTTTA
81401132 TAATAAAATATTTTA
1 TAATAAAATATTTTA
81401147 T
1 T
81401148 TTTATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATAAAATATTTTA
Found at i:81401212 original size:18 final size:18
Alignment explanation
Indices: 81401189--81401238 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
81401179 TTATACTAAA
81401189 TTATATTAAAAGATTTTT
1 TTATATTAAAAGATTTTT
** *
81401207 TTATATTAAATTA-TATT
1 TTATATTAAAAGATTTTT
81401224 TTATA-TAAAAGATTT
1 TTATATTAAAAGATTT
81401239 AACATATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
16 5 0.20
17 9 0.36
18 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TTATATTAAAAGATTTTT
Found at i:81406446 original size:46 final size:47
Alignment explanation
Indices: 81406363--81406578 Score: 184
Period size: 47 Copynumber: 4.5 Consensus size: 47
81406353 TTGCACATAG
* * **
81406363 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGG-A
1 TCACATATCAC--ACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * *
81406411 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * **
81406458 GCACATATCACACCGATGCCATATCCTGGATATGGTCTTATACGGAA
1 TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * *
81406505 GCACAAATCACATTTCTCTGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA-----CTGATGCCATAGCCCAGATATGGTCTTATACGG-AA
* *
81406558 TCACATTTCACA-TGCTGCCAT
1 TCACATATCACACTGATGCCAT
81406579 GGTCCAACCA
Statistics
Matches: 137, Mismatches: 24, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
46 28 0.20
47 60 0.44
48 11 0.08
52 27 0.20
53 11 0.08
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (47 bp):
TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
Found at i:81409112 original size:15 final size:15
Alignment explanation
Indices: 81409064--81409143 Score: 101
Period size: 15 Copynumber: 5.5 Consensus size: 15
81409054 GCAAAGATAA
*
81409064 AAAGAAAACC-GAAT
1 AAAGAAATCCAGAAT
81409078 AAAGAAATCCA-AAT
1 AAAGAAATCCAGAAT
* *
81409092 AGAGAAACCCAGAAT
1 AAAGAAATCCAGAAT
81409107 AAAGAAATCCAGAAT
1 AAAGAAATCCAGAAT
* *
81409122 AAAGAGATCCAGGAT
1 AAAGAAATCCAGAAT
81409137 AAAGAAA
1 AAAGAAA
81409144 CCCAAGATAC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
14 21 0.38
15 35 0.62
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAAGAAATCCAGAAT
Found at i:81409122 original size:44 final size:44
Alignment explanation
Indices: 81409064--81409147 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
81409054 GCAAAGATAA
*
81409064 AAAGAAAACCGAATAAAGAAATCCA-AATAGAGAAACCCAGAAT
1 AAAGAAAACCGAATAAAGAAATCCAGAATAAAGAAACCCAGAAT
* * *
81409107 AAAGAAATCCAGAATAAAGAGATCCAGGATAAAGAAACCCA
1 AAAGAAAACC-GAATAAAGAAATCCAGAATAAAGAAACCCA
81409148 AGATACGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 9 0.26
44 14 0.40
45 12 0.34
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (44 bp):
AAAGAAAACCGAATAAAGAAATCCAGAATAAAGAAACCCAGAAT
Found at i:81409152 original size:15 final size:15
Alignment explanation
Indices: 81409076--81409152 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
81409066 AGAAAACCGA
81409076 ATAAAGAAATCCAA-
1 ATAAAGAAATCCAAG
* *
81409090 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
81409104 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
81409119 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81409135 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81409150 ATA
1 ATA
81409153 CGATACTATG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
13 3 0.06
14 8 0.16
15 37 0.73
16 3 0.06
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81412434 original size:46 final size:47
Alignment explanation
Indices: 81412351--81412566 Score: 184
Period size: 47 Copynumber: 4.5 Consensus size: 47
81412341 TTGCACATAG
* * **
81412351 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGG-A
1 TCACATATCAC--ACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * *
81412399 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * **
81412446 GCACATATCACACCGATGCCATATCCTGGATATGGTCTTATACGGAA
1 TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
* * * *
81412493 GCACAAATCACATTTCTCTGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA-----CTGATGCCATAGCCCAGATATGGTCTTATACGG-AA
* *
81412546 TCACATTTCACA-TGCTGCCAT
1 TCACATATCACACTGATGCCAT
81412567 GGTCCAACCA
Statistics
Matches: 137, Mismatches: 24, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
46 28 0.20
47 60 0.44
48 11 0.08
52 27 0.20
53 11 0.08
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (47 bp):
TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTATACGGAA
Found at i:81419269 original size:24 final size:24
Alignment explanation
Indices: 81419214--81419269 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
81419204 ATACTAAATC
* *
81419214 TTAAAATTAATAATAATAAAAGGT
1 TTAAAATAAATAATAATAAAAGAT
* *
81419238 TTATAATAAATAATAA-AAGAGAAT
1 TTAAAATAAATAATAATAAAAG-AT
81419262 TTAAAATA
1 TTAAAATA
81419270 GTTAACATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (24 bp):
TTAAAATAAATAATAATAAAAGAT
Found at i:81422936 original size:176 final size:175
Alignment explanation
Indices: 81422705--81423027 Score: 481
Period size: 176 Copynumber: 1.8 Consensus size: 175
81422695 CGCAACTGCT
*
81422705 TTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTAAAAT
1 TTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACT-AAAT
* * *
81422770 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGG-TAAAATCTGCTCCATT-GTC
65 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGAGGCTAAAATCCGCTCCATTACT-
81422833 GATACAT-GTAGATAAGATTCACCATCTTCGATTTACTCCGCTGCAAC
129 GATACATAG-AGATAAGATTCACCATCTTCGATTTACTCCGCTGCAAC
* * * *
81422880 TTAGGGAGATAAGATCTTCGATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAAT
1 TTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAAT
** * *
81422945 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCCGCTCCATTACTG
65 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGAGGCTAAAATCCGCTCCATTACTG
81423010 ATACATAGAGATAAGATT
130 ATACATAGAGATAAGATT
81423028 TTCCTCTTCC
Statistics
Matches: 132, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
175 52 0.39
176 78 0.59
177 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (175 bp):
TTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTAAATC
GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGAGGCTAAAATCCGCTCCATTACTGA
TACATAGAGATAAGATTCACCATCTTCGATTTACTCCGCTGCAAC
Found at i:81422956 original size:43 final size:45
Alignment explanation
Indices: 81422886--81422980 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 45
81422876 CAACTTAGGG
* ** *
81422886 AGATAAGATCTTCGATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
*
81422931 AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
81422974 AGATAAG
1 AGATAAG
81422981 GCTTGAGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 36 0.80
44 1 0.02
45 8 0.18
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:81423161 original size:147 final size:146
Alignment explanation
Indices: 81422893--81423174 Score: 386
Period size: 147 Copynumber: 1.9 Consensus size: 146
81422883 GGGAGATAAG
* *
81422893 ATCTTCGATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
* * ** *
81422958 TCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCCGCTCCATTACTGATACATAGAGATA
66 TCTTACTACCTCAGAAAGATAAGGCCAGAGGCTAAAATCCGCTCCATTACTGATACATAGAGATA
81423023 AGATTTTCCTCTTCCA
131 AGATTTTCCTCTTCCA
* * *
81423039 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACCATCTTTAACCTGCT
1 ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACT-CAATCTTCAACCTGCT
* * ** * * *
81423104 CTCTTACTTCCTCAGAAAGATAAGGCCAGTGGCTAAAATTTGCTCCATTGCCT-ATACATGGATA
65 CTCTTACTACCTCAGAAAGATAAGGCCAGAGGCTAAAATCCGCTCCATT-ACTGATACATAGAGA
81423168 TAAGATT
129 TAAGATT
81423175 AGCCATCTGC
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
146 45 0.38
147 70 0.60
148 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (146 bp):
ATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTC
TCTTACTACCTCAGAAAGATAAGGCCAGAGGCTAAAATCCGCTCCATTACTGATACATAGAGATA
AGATTTTCCTCTTCCA
Found at i:81423240 original size:90 final size:90
Alignment explanation
Indices: 81423114--81423390 Score: 304
Period size: 90 Copynumber: 3.1 Consensus size: 90
81423104 CTCTTACTTC
* ** * * *
81423114 CTCAGAAAGATAAGGCCAGTGGCTAAAATTTGCTCCATTGCCTATACATGGATATAAGATTAGCC
1 CTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGCC
81423179 ATCTGCGAATATCTGCTCCGCTGCAA
66 ATCTGCGAA-ATCTGCTCCGCTGCAA
*
81423205 CTCAGAGAGATAAGTCTGGTGG-TAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA-C
1 CTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATT-AGC
*
81423268 CATCTTCG--ATCTGCT-C-C-G---
65 CATCTGCGAAATCTGCTCCGCTGCAA
* * * ** *
81423286 CTCAGAGAGATAAGGCTGGTGGCTTAAATCTACCCCATTATCGATACATGGAGATAAGATTAGTC
1 CTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGCC
*
81423351 ATCTGTGAAGATCTGCTCCGCTGCAA
66 ATCTGCGAA-ATCTGCTCCGCTGCAA
*
81423377 CTTCAGGGAGATAA
1 C-TCAGAGAGATAA
81423391 AATCTTCAGT
Statistics
Matches: 155, Mismatches: 18, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
81 22 0.14
82 39 0.25
84 1 0.01
85 8 0.05
86 2 0.01
87 8 0.05
88 1 0.01
90 43 0.28
91 20 0.13
92 11 0.07
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (90 bp):
CTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTAGCC
ATCTGCGAAATCTGCTCCGCTGCAA
Found at i:81423354 original size:82 final size:83
Alignment explanation
Indices: 81423205--81423372 Score: 216
Period size: 82 Copynumber: 2.0 Consensus size: 83
81423195 TCCGCTGCAA
* * * *
81423205 CTCAGAGAGATAAGTCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCA
1 CTCAGAGAGATAAGGCTGGTGGTAAAATCTACCCCATTACCGATACATGGAGATAAGATTCACCA
*
81423270 TCT-T-CGATCTGCTCCG
66 TCTGTAAGATCTGCTCCG
* * *
81423286 CTCAGAGAGATAAGGCTGGTGGCTTAAATCTACCCCATTATCGATACATGGAGATAAGATT-AGT
1 CTCAGAGAGATAAGGCTGGTGG-TAAAATCTACCCCATTACCGATACATGGAGATAAGATTCA-C
81423350 CATCTGTGAAGATCTGCTCCG
64 CATCTGT-AAGATCTGCTCCG
81423371 CT
1 CT
81423373 GCAACTTCAG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
81 22 0.30
82 38 0.51
83 1 0.01
85 13 0.18
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (83 bp):
CTCAGAGAGATAAGGCTGGTGGTAAAATCTACCCCATTACCGATACATGGAGATAAGATTCACCA
TCTGTAAGATCTGCTCCG
Done.