Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 25 of 320
Found at i:6993053 original size:36 final size:37
Alignment explanation
Indices: 6992977--6993074 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
6992967 AATCTTTAAG
*
6992977 GATATGCAATATTAGATATGATATGCAATCTTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATCTTAGATAT
6993015 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
6993051 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
6993075 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:6995781 original size:12 final size:12
Alignment explanation
Indices: 6995764--6995788 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6995754 TAAAGTTATC
6995764 AAAAAGAGAAAG
1 AAAAAGAGAAAG
6995776 AAAAAGAGAAAG
1 AAAAAGAGAAAG
6995788 A
1 A
6995789 GAGAAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:7008683 original size:19 final size:19
Alignment explanation
Indices: 7008659--7008755 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
7008649 AATCTTTAAG
*
7008659 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
7008678 GATATGC-ATCTTAGATAT
1 GATATGCAATCTTAGATAT
7008696 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7008713 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7008732 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7008753 GAT
1 GAT
7008756 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
16 1 0.01
17 15 0.21
18 14 0.19
19 33 0.46
21 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7008689 original size:35 final size:35
Alignment explanation
Indices: 7008649--7008733 Score: 97
Period size: 35 Copynumber: 2.4 Consensus size: 35
7008639 ATGGAAATAT
7008649 AATCTTTAAGGATATG-CAATATTAGATATGATATGC
1 AATCTTT-A-GATATGACAATATTAGATATGATATGC
*
7008685 -ATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATG--ACAATATTAGATATGATATGC
7008720 AATC-TTAGATATGA
1 AATCTTTAGATATGA
7008734 TATGCAATCT
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
32 6 0.14
33 1 0.02
34 3 0.07
35 22 0.50
36 12 0.27
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAGATATGACAATATTAGATATGATATGC
Found at i:7008752 original size:35 final size:37
Alignment explanation
Indices: 7008659--7008755 Score: 144
Period size: 35 Copynumber: 2.6 Consensus size: 37
7008649 AATCTTTAAG
*
7008659 GATATGCAATATTAGATATGATATGCATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCATCTTAGATAT
7008696 GATA--CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGC-ATCTTAGATAT
7008732 GATATGCAATCTTGAAGATATGAT
1 GATATGCAATCTT--AGATATGAT
7008756 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
35 19 0.35
36 15 0.28
37 4 0.07
38 7 0.13
40 9 0.17
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATATGCAATCTTAGATATGATATGCATCTTAGATAT
Found at i:7009069 original size:17 final size:19
Alignment explanation
Indices: 7009037--7009071 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7009027 TTCCCTGATT
7009037 TTTTTTATATATATTTTAA
1 TTTTTTATATATATTTTAA
7009056 TTTTTTA-ATA-ATTTTA
1 TTTTTTATATATATTTTA
7009072 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTATATATATTTTAA
Found at i:7011452 original size:12 final size:12
Alignment explanation
Indices: 7011435--7011459 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7011425 TAAAGTTATC
7011435 AAAAAGAGAAAG
1 AAAAAGAGAAAG
7011447 AAAAAGAGAAAG
1 AAAAAGAGAAAG
7011459 A
1 A
7011460 GAGAAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:7013989 original size:7 final size:8
Alignment explanation
Indices: 7013976--7014023 Score: 71
Period size: 8 Copynumber: 5.9 Consensus size: 8
7013966 CTTCTATTTC
7013976 AAAAAAAG
1 AAAAAAAG
7013984 AAAAAAAG
1 AAAAAAAG
7013992 AAAAAAA-
1 AAAAAAAG
7013999 AGAAAAAAG
1 A-AAAAAAG
7014008 AGAAAAAAG
1 A-AAAAAAG
7014017 AAAAAAA
1 AAAAAAA
7014024 ATGGAGAGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 1 0.03
8 27 0.71
9 10 0.26
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:7013990 original size:9 final size:9
Alignment explanation
Indices: 7013976--7014024 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
7013966 CTTCTATTTC
7013976 AAAAAAAG-
1 AAAAAAAGA
7013984 AAAAAAAGA
1 AAAAAAAGA
7013993 AAAAAAAG-
1 AAAAAAAGA
7014001 -AAAAAAGA
1 AAAAAAAGA
*
7014009 GAAAAAAGA
1 AAAAAAAGA
7014018 AAAAAAA
1 AAAAAAA
7014025 TGGAGAGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
7 7 0.19
8 8 0.22
9 22 0.59
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:7015040 original size:44 final size:43
Alignment explanation
Indices: 7014984--7015768 Score: 477
Period size: 44 Copynumber: 17.9 Consensus size: 43
7014974 GATCCAAGAT
* *
7014984 GATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATACCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
*
7015028 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG--ATA-C-A
* * ** * * *
7015075 -ATTTGGC-TTTCACGTATTTAC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATACA
* *
7015115 GATTTAGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * * *
7015159 GATTTGGCATCTATGTATTCGGTAGAGGGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * ** * * *
7015206 GATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATACA
* * *
7015247 GATTTGGCATCTCTATATTGGCAGAGAGTAGATTGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * *
7015291 GATTTGGCATCTCTGTATTGGTAGAGAACAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * **
7015335 GATTTGGCATCTCTATATTCGGCGGAGAGCAGATCGAAGACATAGTT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATA-CA
* * * ** *
7015382 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT---
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATACA
*
7015423 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* * *
7015467 GATTTGGCATCTCTATATTGGCAGAGAACAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
7015511 GATTTGGCATCTCTGTATTCGGC-GAAGAGCAGATTGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAG-AGAGCAGATCGAAG--ATA-CA
* * * ** *
7015558 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT---
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATACA
* *
7015599 GATTTGGCATCTTTGAATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
7015643 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * * *
7015687 GATTTGGCGTCTCTGTATTGGCAAAGAGCATATCGAAGATAGAA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
** *
7015731 GATTTGGCATCTCTGTATTGTTAGAGAGCATAT-GAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
7015769 GAAGATCAAC
Statistics
Matches: 576, Mismatches: 107, Indels: 117
0.72 0.13 0.15
Matches are distributed among these distances:
39 11 0.02
40 50 0.09
41 47 0.08
42 8 0.01
43 6 0.01
44 272 0.47
45 60 0.10
46 26 0.05
47 77 0.13
48 13 0.02
49 6 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATACA
Found at i:7015248 original size:132 final size:131
Alignment explanation
Indices: 7014952--7015329 Score: 528
Period size: 132 Copynumber: 2.9 Consensus size: 131
7014942 AGATCTAACC
* ** * * * *
7014952 TTCAAGTATTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGGGAGCAGAT
1 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
*
7015017 CGAAGATACCAGATTTGGCATCTCTGTATTGGCAG-GGAGCAGATCGAAGACATAGCTAATTTGG
66 CGAAGATA-CAGATTTGGCATCTCTGTATTGGTAGAGGAGCAGATCGAAGACATAGCTAATTTGG
7015081 CT
130 CT
*
7015083 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGGCAGAGAGCAGAT
1 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
* * *
7015148 CGAAGATGACTGATTTGGCATCTATGTATTCGGTAGAGG-GCAGATCGAAGACATAGCTGATTTG
66 CGAAGAT-ACAGATTTGGCATCTCTGTATT-GGTAGAGGAGCAGATCGAAGACATAGCTAATTTG
7015212 GCT
129 GCT
* * * *
7015215 TTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGGCAGAGAGTAGAT
1 TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
* * *
7015280 TGAAGATAACAGATTTGGCATCTCTGTATTGGTAGA-GAACAGATCAAAGA
66 CGAAGAT-ACAGATTTGGCATCTCTGTATTGGTAGAGGAGCAGATCGAAGA
7015330 TGACAGATTT
Statistics
Matches: 220, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
130 1 0.00
131 99 0.45
132 118 0.54
133 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (131 bp):
TTCACGTATTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
CGAAGATACAGATTTGGCATCTCTGTATTGGTAGAGGAGCAGATCGAAGACATAGCTAATTTGGC
T
Found at i:7015303 original size:176 final size:175
Alignment explanation
Indices: 7015115--7015725 Score: 902
Period size: 176 Copynumber: 3.5 Consensus size: 175
7015105 AATCTAAGAT
* * * * *
7015115 GATTTAGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATGACTGATTTGGCATCTATGTATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* * * *
7015180 GTAGAGGGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAG
66 G-AGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
*
7015245 ATGATTTGGCATCTCTATATTGGCAGAGAGTAGATTGAAGATAACA
130 ATGATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAGATAACA
* *
7015291 GATTTGGCATCTCTGTATTGGTAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTATATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
7015356 GCGGAGAGCAGATCGAAGACATAGTTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
66 G-AGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
* *
7015421 ATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCA
130 ATGATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAGATAACA
*
7015467 GATTTGGCATCTCTATATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
7015532 GCGAAGAGCAGATTGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
66 GAG-AGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAG
* *
7015597 ATGATTTGGCATCTTTGA-ATTGGCAGAGAGCAGATCGAAGATAACA
130 ATGATTTGGCATCTCT-ATATTGGCAGAGAGTAGATCGAAGATAACA
* * * * * *
7015643 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATT-G
1 GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
* *
7015707 GCAAAGAGCATATCGAAGA
66 G-AGAGAGCAGATCGAAGA
7015726 TAGAAGATTT
Statistics
Matches: 394, Mismatches: 38, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
175 16 0.04
176 378 0.96
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (175 bp):
GATTTGGCATCTCTGTATTGGCAGAGAACAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG
GAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGA
TGATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAGATAACA
Found at i:7015919 original size:90 final size:87
Alignment explanation
Indices: 7015825--7015993 Score: 207
Period size: 90 Copynumber: 1.9 Consensus size: 87
7015815 CAAAATGATT
* * *
7015825 TGGCATTCTTGTGTTTACAGGGAAC-AGATTGAAGACATAGCAGA-TCTGACATTCCTGTGCTTA
1 TGGCATCCCTGTGTTTACAGGGAACAAG-TTGAAG--ATAGCAGATTCTG-CATCCCTGTGCTTA
7015888 CAGCGAAGCAGATCAAAGATTTTAACA
62 CAGCGAA-CAGATCAAAGATTTTAACA
* * * *
7015915 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTTGCATCCCTGTGTTTACAGG
1 TGGCATCCCTGTGTTTACAGGGAACAAGTTGAAGATAGCAGATTCTGCATCCCTGTGCTTACAGC
*
7015980 GAACAGATCGAAGA
66 GAACAGATCAAAGA
7015994 CATAGCAGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
87 10 0.14
88 26 0.38
89 3 0.04
90 28 0.41
91 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTACAGGGAACAAGTTGAAGATAGCAGATTCTGCATCCCTGTGCTTACAGC
GAACAGATCAAAGATTTTAACA
Found at i:7015965 original size:44 final size:43
Alignment explanation
Indices: 7015824--7016099 Score: 182
Period size: 44 Copynumber: 6.2 Consensus size: 43
7015814 CCAAAATGAT
* *
7015824 TTGGCATTCTTGTGTTTACAGGGAACAGATTGAAGACATAGCAGA
1 TTGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGA
* * * * ** ***
7015869 TCTGACATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA-A
1 T-TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAGA
* *
7015913 CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGA
1 -TTGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGA
* *
7015957 TTTTGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGA
1 -TTGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGA
* * * * * **
7016003 TCTGACATTCCTATGCTTACAGCGAAGCAGATTGAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-A
* *
7016049 -TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGA
1 TTGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGA
7016091 TTTGGCATC
1 -TTGGCATC
7016100 TCCATATTCG
Statistics
Matches: 174, Mismatches: 43, Indels: 29
0.71 0.17 0.12
Matches are distributed among these distances:
42 3 0.02
43 21 0.12
44 75 0.43
45 11 0.06
46 47 0.27
47 17 0.10
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (43 bp):
TTGGCATCCCTGTGTTTACAGGGAACAGATTGAAGATAGCAGA
Found at i:7016061 original size:134 final size:134
Alignment explanation
Indices: 7015821--7016176 Score: 471
Period size: 134 Copynumber: 2.6 Consensus size: 134
7015811 GATCCAAAAT
* * * *
7015821 GATTTGGCATTCTTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
*
7015886 TACAGCGAAGCAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
7015951 AGCA
131 AGCA
*
7015955 GATTTTGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
** *
7016020 TACAGCGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
*
7016085 AGTA
131 AGCA
* ** * * ** * * * *
7016089 GATTTGGCATCTCCATAT-TCGACGGGGAGCAGATTAAAGACATAGTAGATCTGACCTTCATGTG
1 GATTTGGCATC-CC-TGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATG
* * *
7016153 TTTACATCGAAGCAGATCTAAGAT
64 CTTACAGCGAAGCAGATCAAAGAT
7016177 GACAGATTTG
Statistics
Matches: 194, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
134 134 0.69
135 58 0.30
136 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (134 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTATGCT
TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
AGCA
Found at i:7016296 original size:44 final size:45
Alignment explanation
Indices: 7016163--7016317 Score: 181
Period size: 45 Copynumber: 3.5 Consensus size: 45
7016153 TTTACATCGA
* *
7016163 AGCAGATCT-AAGATGACAGATTTGGCATCTTTGTATTAGACGGGG
1 AGCAGAT-TGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
7016208 AGCAAATTGGAGATAACAGATTTGACATCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
7016253 AGCAGATTGAAGA-AGCA-ATTTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATTGAAGATAACAGA-TTTGGCATCTCTGTATTAGACGGGG
** *
7016297 AGCAGATCAAAGATAGCAGAT
1 AGCAGATTGAAGATAACAGAT
7016318 ATCGCCTTCC
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 38 0.40
45 54 0.57
46 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:7017021 original size:20 final size:21
Alignment explanation
Indices: 7016984--7017024 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7016974 TGCAGTGTTG
* *
7016984 AAAATTTTCATGATTTTCTGA
1 AAAATTCTCATGAGTTTCTGA
7017005 AAAATTCTC-TGAGTTTCTGA
1 AAAATTCTCATGAGTTTCTGA
7017025 TTTAGTCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (21 bp):
AAAATTCTCATGAGTTTCTGA
Found at i:7021540 original size:51 final size:51
Alignment explanation
Indices: 7021457--7021565 Score: 139
Period size: 51 Copynumber: 2.1 Consensus size: 51
7021447 AAATGAGCTT
* * * *
7021457 TACCATCCAAGAACACGCCTGGGCACTGAGTGCCAAGCCTGTAGGCTAAACA
1 TACC-TCCAAAAACACGCCTGGGCACTAAGTGCCAAGCCTATAAGCTAAACA
* * *
7021509 TACCTCCAAAAACATGCTTGGGCACTAAGTGCCAAGCCTATAAGCTACACA
1 TACCTCCAAAAACACGCCTGGGCACTAAGTGCCAAGCCTATAAGCTAAACA
7021560 T-CCTCC
1 TACCTCC
7021566 CGCAGAAACA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 5 0.10
51 41 0.82
52 4 0.08
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.18
Consensus pattern (51 bp):
TACCTCCAAAAACACGCCTGGGCACTAAGTGCCAAGCCTATAAGCTAAACA
Found at i:7024615 original size:19 final size:19
Alignment explanation
Indices: 7024591--7024627 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7024581 GTTCATATAA
*
7024591 TAACTAATTTGGTTCAAAC
1 TAACTAATTTGATTCAAAC
*
7024610 TAACTACTTTGATTCAAA
1 TAACTAATTTGATTCAAA
7024628 ATTCTAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
TAACTAATTTGATTCAAAC
Found at i:7030461 original size:2 final size:2
Alignment explanation
Indices: 7030454--7030485 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7030444 AAATAATGAT
7030454 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7030486 AAGGGGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7031636 original size:22 final size:23
Alignment explanation
Indices: 7031610--7031653 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7031600 TATTCATTTA
* *
7031610 TTTATAATTC-TATGTGTTTTTT
1 TTTATAAATCTTATGTATTTTTT
7031632 TTTATAAATCTTATGTATTTTT
1 TTTATAAATCTTATGTATTTTT
7031654 ATCGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.66
Consensus pattern (23 bp):
TTTATAAATCTTATGTATTTTTT
Found at i:7035271 original size:19 final size:19
Alignment explanation
Indices: 7035247--7035284 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7035237 GTTGCCATAC
7035247 ACTACCACCTTATTTCCTT
1 ACTACCACCTTATTTCCTT
7035266 ACTACCACCTTATTTCCTT
1 ACTACCACCTTATTTCCTT
7035285 CTCTGTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (19 bp):
ACTACCACCTTATTTCCTT
Found at i:7036163 original size:17 final size:17
Alignment explanation
Indices: 7036143--7036213 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
7036133 ATTTTTAGAG
*
7036143 TTAAATATATAATTTAA
1 TTAAAAATATAATTTAA
*
7036160 TTAAATAT-TAATTTTAA
1 TTAAAAATATAA-TTTAA
*
7036177 TTGAAAAAAATAAATTT-A
1 TT-AAAAATAT-AATTTAA
*
7036195 TAAAAAATATAATTTAA
1 TTAAAAATATAATTTAA
7036212 TT
1 TT
7036214 TTATAACACT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
16 8 0.18
17 24 0.55
18 6 0.14
19 4 0.09
20 2 0.05
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (17 bp):
TTAAAAATATAATTTAA
Found at i:7036201 original size:16 final size:16
Alignment explanation
Indices: 7036181--7036210 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7036171 TTTTAATTGA
7036181 AAAAAATA-AATTTAT
1 AAAAAATATAATTTAT
7036196 AAAAAATATAATTTA
1 AAAAAATATAATTTA
7036211 ATTTTATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAAAATATAATTTAT
Found at i:7037648 original size:17 final size:15
Alignment explanation
Indices: 7037609--7037653 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
7037599 TATAAATAGG
*
7037609 AATAGAAATACAATA
1 AATAGAAATATAATA
7037624 AATAGAAATATAATA
1 AATAGAAATATAATA
7037639 ATAGTAGAAATATAA
1 A-A-TAGAAATATAA
7037654 GTAGATAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 15 0.56
16 1 0.04
17 11 0.41
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.24
Consensus pattern (15 bp):
AATAGAAATATAATA
Found at i:7037653 original size:29 final size:29
Alignment explanation
Indices: 7037621--7037737 Score: 76
Period size: 29 Copynumber: 4.0 Consensus size: 29
7037611 TAGAAATACA
*
7037621 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAATATAATAATAATAGAAAT
* * * * *
7037650 ATAAGTAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AATATAATAATAATAGAAAT
* * * * * * *
7037679 AGT-AATAGTATTAGAATGACAAAATAAAT
1 A-TAAATAGAAATATAATAATAATAGAAAT
*
7037708 ATAAATAGAAATATAATAATAATAGTAAT
1 ATAAATAGAAATATAATAATAATAGAAAT
7037737 A
1 A
7037738 ATATATTAAA
Statistics
Matches: 61, Mismatches: 23, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
28 2 0.03
29 56 0.92
30 3 0.05
ACGTcount: A:0.61, C:0.01, G:0.10, T:0.28
Consensus pattern (29 bp):
ATAAATAGAAATATAATAATAATAGAAAT
Found at i:7040900 original size:39 final size:39
Alignment explanation
Indices: 7040854--7041078 Score: 252
Period size: 39 Copynumber: 5.7 Consensus size: 39
7040844 TTGTGTTGTA
* * * *
7040854 TGATATATGCTTGAATGTTATGTAATTAAATGAGTATTG
1 TGATATATGCTTAAATGTTATGTGATTATATGTGTATTG
* * * * * *
7040893 TGATATATGTTTGAATGCTATGTAATTAGATGTGTATCG
1 TGATATATGCTTAAATGTTATGTGATTATATGTGTATTG
*
7040932 TGATATATGCTTAAATGTTATGTGATTATATGTTTATTG
1 TGATATATGCTTAAATGTTATGTGATTATATGTGTATTG
* * *
7040971 TGTTATATGCTTAAATGTGATGCGATTATATGTGTATTG
1 TGATATATGCTTAAATGTTATGTGATTATATGTGTATTG
**
7041010 TGATTATATGCTTAAATGTTATGTGATTATATGTGTAACG
1 TGA-TATATGCTTAAATGTTATGTGATTATATGTGTATTG
* * * *
7041050 TAATAAATGCTTAAAAGTGAATGTGATTA
1 TGATATATGCTTAAATGT-TATGTGATTA
7041079 CCATGTAAAT
Statistics
Matches: 159, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 116 0.73
40 43 0.27
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (39 bp):
TGATATATGCTTAAATGTTATGTGATTATATGTGTATTG
Found at i:7040962 original size:23 final size:23
Alignment explanation
Indices: 7040922--7041042 Score: 83
Period size: 23 Copynumber: 5.8 Consensus size: 23
7040912 ATGTAATTAG
7040922 ATGTGTATCGTGA-TATATGCTTAA
1 ATGT-TAT-GTGATTATATGCTTAA
7040946 ATGTTATGTGATTATATG-TT--
1 ATGTTATGTGATTATATGCTTAA
*
7040966 -T-AT-TGTG-TTATATGCTTAA
1 ATGTTATGTGATTATATGCTTAA
* *
7040985 ATGTGATGCGATTATATG-----
1 ATGTTATGTGATTATATGCTTAA
7041003 -TG-TATTGTGATTATATGCTTAA
1 ATGTTA-TGTGATTATATGCTTAA
7041025 ATGTTATGTGATTATATG
1 ATGTTATGTGATTATATG
7041043 TGTAACGTAA
Statistics
Matches: 75, Mismatches: 6, Indels: 33
0.66 0.05 0.29
Matches are distributed among these distances:
16 8 0.11
17 19 0.25
18 1 0.01
19 1 0.01
20 1 0.01
22 9 0.12
23 30 0.40
24 6 0.08
ACGTcount: A:0.27, C:0.04, G:0.21, T:0.48
Consensus pattern (23 bp):
ATGTTATGTGATTATATGCTTAA
Found at i:7041060 original size:79 final size:79
Alignment explanation
Indices: 7040917--7041078 Score: 218
Period size: 79 Copynumber: 2.1 Consensus size: 79
7040907 ATGCTATGTA
* ** ** *
7040917 ATTAGATGTGTATCGTGATATATGCTTAAATGTTATGTGATTATATGTTTATTGTGTTATATGCT
1 ATTAGATGTGTATCGTGATATATGCTTAAATGTTATGTGATTATATGTGTAACGTAATAAATGCT
*
7040982 TAAATGTG-ATGCG
66 TAAAAGTGAATGCG
* *
7040995 ATTATATGTGTATTGTGATTATATGCTTAAATGTTATGTGATTATATGTGTAACGTAATAAATGC
1 ATTAGATGTGTATCGTGA-TATATGCTTAAATGTTATGTGATTATATGTGTAACGTAATAAATGC
*
7041060 TTAAAAGTGAATGTG
65 TTAAAAGTGAATGCG
7041075 ATTA
1 ATTA
7041079 CCATGTAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 16 0.22
79 48 0.67
80 8 0.11
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (79 bp):
ATTAGATGTGTATCGTGATATATGCTTAAATGTTATGTGATTATATGTGTAACGTAATAAATGCT
TAAAAGTGAATGCG
Found at i:7044174 original size:29 final size:30
Alignment explanation
Indices: 7044127--7044194 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
7044117 TGGCCCAAGA
* * *
7044127 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TAAAAAGTTGAAGGACTAATAGT
7044157 GTAAATATAAAAAGTTGAAGGACTAATAGT
1 GTAAATATAAAAAGTTGAAGGACTAATAGT
*
7044187 GCAAATAT
1 GTAAATAT
7044195 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.28
Consensus pattern (30 bp):
GTAAATATAAAAAGTTGAAGGACTAATAGT
Found at i:7046668 original size:46 final size:46
Alignment explanation
Indices: 7046616--7046843 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
7046606 AGTGTGCTCT
*
7046616 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7046662 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7046708 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7046754 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
7046800 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7046844 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7053885 original size:12 final size:12
Alignment explanation
Indices: 7053868--7053900 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7053858 TTCCCTGTAA
*
7053868 AATAGTAAAATT
1 AATAGTAAAAAT
7053880 AATAGTAAAAAT
1 AATAGTAAAAAT
7053892 AATAGTAAA
1 AATAGTAAA
7053901 GGGGAAGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (12 bp):
AATAGTAAAAAT
Found at i:7054832 original size:10 final size:10
Alignment explanation
Indices: 7054813--7054872 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
7054803 TGAAATTCTA
7054813 AAAGATAAAT
1 AAAGATAAAT
7054823 ACAA-ATAAAT
1 A-AAGATAAAT
*
7054833 AAAGATAATT
1 AAAGATAAAT
7054843 AAAGATAAAT
1 AAAGATAAAT
7054853 AAAGATAAAT
1 AAAGATAAAT
7054863 GAAA-ATAAAT
1 -AAAGATAAAT
7054873 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:7059375 original size:34 final size:34
Alignment explanation
Indices: 7059334--7059403 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
7059324 AAAAGAGCTT
7059334 ATCTATAAATAATTTTATTTTTATATAAAAATTA
1 ATCTATAAATAATTTTATTTTTATATAAAAATTA
7059368 ATCTATAAATAATTTTATTTTTATATAAAAATTA
1 ATCTATAAATAATTTTATTTTTATATAAAAATTA
7059402 AT
1 AT
7059404 TTAAATCAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (34 bp):
ATCTATAAATAATTTTATTTTTATATAAAAATTA
Found at i:7059392 original size:18 final size:18
Alignment explanation
Indices: 7059337--7059392 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
7059327 AGAGCTTATC
7059337 TATAAATAATTTTATTTT
1 TATAAATAATTTTATTTT
* * *
7059355 TATATAA-AA-ATTA-ATC
1 TATA-AATAATTTTATTTT
7059371 TATAAATAATTTTATTTT
1 TATAAATAATTTTATTTT
7059389 TATA
1 TATA
7059393 TAAAAATTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 2 0.07
16 7 0.25
17 6 0.21
18 11 0.39
19 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATAAATAATTTTATTTT
Found at i:7059405 original size:18 final size:18
Alignment explanation
Indices: 7059350--7059405 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
7059340 AAATAATTTT
7059350 ATTTTTATATAAAAATTA
1 ATTTTTATATAAAAATTA
* * *
7059368 A--TCTATA-AATAATTTT
1 ATTTTTATATAA-AAATTA
7059384 ATTTTTATATAAAAATTA
1 ATTTTTATATAAAAATTA
7059402 ATTT
1 ATTT
7059406 AAATCAAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
18 14 0.50
19 2 0.07
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTTATATAAAAATTA
Found at i:7059685 original size:15 final size:15
Alignment explanation
Indices: 7059651--7059722 Score: 58
Period size: 15 Copynumber: 4.7 Consensus size: 15
7059641 ATATTATTGA
7059651 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
7059664 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
7059679 AAATATTTATTATAATTAT
1 AAATA--T-TT-TAATAAT
*
7059698 AAATATATTAATAAT
1 AAATATTTTAATAAT
*
7059713 AAATGTTTTA
1 AAATATTTTA
7059723 TATTATAAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 20 0.43
16 1 0.02
17 2 0.04
18 2 0.04
19 11 0.24
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:7059694 original size:19 final size:19
Alignment explanation
Indices: 7059667--7059703 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7059657 TTAATATTAA
*
7059667 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
7059686 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
7059704 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:7059709 original size:34 final size:31
Alignment explanation
Indices: 7059665--7059731 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 31
7059655 ATTTAATATT
* *
7059665 AATATTTTAATAATAAATATTTATTATAATTATA
1 AATATATTAATAATAAAT-GTT-TTAT-ATTATA
7059699 AATATATTAATAATAAATGTTTTATATTATA
1 AATATATTAATAATAAATGTTTTATATTATA
7059730 AA
1 AA
7059732 GGTTAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 8 0.26
32 4 0.13
33 2 0.06
34 17 0.55
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (31 bp):
AATATATTAATAATAAATGTTTTATATTATA
Found at i:7060162 original size:19 final size:19
Alignment explanation
Indices: 7060138--7060183 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
7060128 CATCCAAACA
*
7060138 CCAGAAAATATTAAT-TTTT
1 CCAGAAAA-ATAAATATTTT
7060157 CCAGAAAAATAAATCATTTT
1 CCAGAAAAATAAAT-ATTTT
7060177 CCAGAAA
1 CCAGAAA
7060184 TCATTTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 8 0.33
20 11 0.46
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (19 bp):
CCAGAAAAATAAATATTTT
Found at i:7060186 original size:14 final size:14
Alignment explanation
Indices: 7060167--7060205 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
7060157 CCAGAAAAAT
7060167 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
7060181 AAATCATTTTCTAG
1 AAATCATTTTCCAG
*
7060195 AAGTCATTTTC
1 AAATCATTTTC
7060206 AGTGAAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:7060575 original size:22 final size:20
Alignment explanation
Indices: 7060544--7060584 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
7060534 CAAATAACTC
7060544 AAATTATTTAATTCAAAATTTA
1 AAATTATTT-A-TCAAAATTTA
*
7060566 AAATTTTTTATCAAAATTT
1 AAATTATTTATCAAAATTT
7060585 TCAAATCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 1 0.06
22 8 0.44
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
AAATTATTTATCAAAATTTA
Found at i:7066278 original size:21 final size:21
Alignment explanation
Indices: 7066252--7066292 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7066242 AGACGAGCAA
* *
7066252 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7066273 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7066293 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7069509 original size:16 final size:15
Alignment explanation
Indices: 7069488--7069527 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
7069478 TAAAAAAACT
7069488 AATTGATAGTATAACA
1 AATTGA-AGTATAACA
7069504 AATTG-AGTATAACA
1 AATTGAAGTATAACA
7069518 AATTG-AGTAT
1 AATTGAAGTAT
7069528 CGGGCGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 19 0.79
16 5 0.21
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (15 bp):
AATTGAAGTATAACA
Found at i:7069514 original size:14 final size:14
Alignment explanation
Indices: 7069495--7069527 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
7069485 ACTAATTGAT
7069495 AGTATAACAAATTG
1 AGTATAACAAATTG
7069509 AGTATAACAAATTG
1 AGTATAACAAATTG
7069523 AGTAT
1 AGTAT
7069528 CGGGCGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.30
Consensus pattern (14 bp):
AGTATAACAAATTG
Found at i:7078227 original size:37 final size:38
Alignment explanation
Indices: 7078173--7078247 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 38
7078163 GTAAGATATT
7078173 GCTACCTCCGGCTCTCGTTGAGAGTTGAACTCAAGACC
1 GCTACCTCCGGCTCTCGTTGAGAGTTGAACTCAAGACC
*
7078211 GCTACCT-CTGCTCTCGTTGAGAGTTGAACTCAAGACC
1 GCTACCTCCGGCTCTCGTTGAGAGTTGAACTCAAGACC
7078248 TCCCGCTTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 29 0.81
38 7 0.19
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (38 bp):
GCTACCTCCGGCTCTCGTTGAGAGTTGAACTCAAGACC
Found at i:7101775 original size:5 final size:5
Alignment explanation
Indices: 7101765--7101796 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7101755 CCAATTTATG
7101765 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7101797 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7107276 original size:21 final size:20
Alignment explanation
Indices: 7107225--7107276 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7107215 AAATCCAAAT
** *
7107225 TAAAATACAAAAATTCAGGA
1 TAAAATACTGAAATTCAGAA
*
7107245 TAAAATTCTGAAATTCAGAA
1 TAAAATACTGAAATTCAGAA
7107265 TAAAAATACTGA
1 T-AAAATACTGA
7107277 TGTATCATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.25
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGAA
Found at i:7117828 original size:41 final size:39
Alignment explanation
Indices: 7117715--7117838 Score: 128
Period size: 37 Copynumber: 3.2 Consensus size: 39
7117705 GTACCCAATA
* *
7117715 CCTCATCGGATAATTCGAAGTAATAATTTGACACCCAGTG
1 CCTCATC-GATAATCCGAAGTAATAAATTGACACCCAGTG
* * * *
7117755 TCTCATCGGCTAAACCGAAG---TAAATTGGCACCCAGTG
1 CCTCATC-GATAATCCGAAGTAATAAATTGACACCCAGTG
7117792 CCTCATCGAATTAATCCGAAGTAATAAATTGACACCCAGTG
1 CCTCATCG-A-TAATCCGAAGTAATAAATTGACACCCAGTG
*
7117833 TCTCAT
1 CCTCAT
7117839 TAACTCGAAG
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
36 1 0.01
37 21 0.31
38 9 0.13
40 16 0.24
41 21 0.31
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (39 bp):
CCTCATCGATAATCCGAAGTAATAAATTGACACCCAGTG
Found at i:7118777 original size:20 final size:20
Alignment explanation
Indices: 7118732--7118778 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
7118722 TTTCTCCTTT
* * *
7118732 TCTTTC-CTTTTTCTTTCTT
1 TCTTTCTCTGTTTCGTTCTA
*
7118751 TCCTTCTCTGTTTCGTTCTA
1 TCTTTCTCTGTTTCGTTCTA
7118771 TCTTTCTC
1 TCTTTCTC
7118779 ATTTTCTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.02, C:0.30, G:0.04, T:0.64
Consensus pattern (20 bp):
TCTTTCTCTGTTTCGTTCTA
Found at i:7118820 original size:5 final size:5
Alignment explanation
Indices: 7118812--7118889 Score: 149
Period size: 5 Copynumber: 15.8 Consensus size: 5
7118802 CTTTTATTAT
7118812 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
7118862 TATAA TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATAA TATA
7118890 CTTAAACATT
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.06
5 68 0.94
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:7125042 original size:40 final size:38
Alignment explanation
Indices: 7124977--7125104 Score: 157
Period size: 38 Copynumber: 3.3 Consensus size: 38
7124967 AAACCCAAAC
* * *
7124977 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCAGGA-TTT-AACTCGGAT
* *
7125017 ATAATACCAGCACTAGGCCTGCAGGATTTAACTCGGAT
1 ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
* * *
7125055 ATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
*
7125093 ATAATTCCAGCA
1 ATAATACCAGCA
7125105 TATAGCTTGC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
38 51 0.67
39 3 0.04
40 22 0.29
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
Found at i:7125116 original size:38 final size:38
Alignment explanation
Indices: 7125014--7125117 Score: 122
Period size: 38 Copynumber: 2.7 Consensus size: 38
7125004 TTTAAACTCA
* * * *
7125014 GATATAATACCAGCACTAGGCCTGCAGGATTTAACTCG
1 GATATAATTCCAGCACTAAGCCTGCGGGATTTAACCCG
*
7125052 GATAT-ATTACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATT-CCAGCACTAAGCCTGCGGGATTTAACCCG
*
7125090 GATATAATTCCAGCA-TATAGCTTGCGGG
1 GATATAATTCCAGCACTA-AGCCTGCGGG
7125118 TCTTTAAGCT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
37 3 0.05
38 50 0.89
39 3 0.05
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (38 bp):
GATATAATTCCAGCACTAAGCCTGCGGGATTTAACCCG
Found at i:7127165 original size:40 final size:39
Alignment explanation
Indices: 7127121--7127232 Score: 108
Period size: 40 Copynumber: 2.9 Consensus size: 39
7127111 TCGGATAATT
*
7127121 CGAAGTAATAAGTTGACACCCAGTGTCTCATCGACTAAAC
1 CGAAGTAATAAGTTGACACCCAATG-CTCATCGACTAAAC
* * *
7127161 CGAAGT-A-AA-TTGA-AACCAATGCCTCATCGAATTAATC
1 CGAAGTAATAAGTTGACACCCAATG-CTCATCG-ACTAAAC
*
7127198 CGAAGTAAT-AGATTGACACCTAATGCTCATCGACT
1 CGAAGTAATAAG-TTGACACCCAATGCTCATCGACT
7127233 CGAGGTCAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
36 13 0.22
37 15 0.26
38 4 0.07
39 3 0.05
40 17 0.29
41 6 0.10
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (39 bp):
CGAAGTAATAAGTTGACACCCAATGCTCATCGACTAAAC
Found at i:7128143 original size:18 final size:18
Alignment explanation
Indices: 7128115--7128158 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
7128105 GCTTATTCTT
7128115 TTATT-TATTATAATA-A
1 TTATTATATTATAATATA
7128131 TATATTATATTATAATATA
1 T-TATTATATTATAATATA
7128150 TTATTATAT
1 TTATTATAT
7128159 ACTTAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.04
17 4 0.16
18 18 0.72
19 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATTATATTATAATATA
Found at i:7128149 original size:10 final size:10
Alignment explanation
Indices: 7128120--7128168 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
7128110 TTCTTTTATT
7128120 TATTATAATA
1 TATTATAATA
*
7128130 -A-TATATTA
1 TATTATAATA
7128138 TATTATAATA
1 TATTATAATA
*
7128148 TATTATTATA
1 TATTATAATA
7128158 TACTTA-AATA
1 TA-TTATAATA
7128168 T
1 T
7128169 TAAGTATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.19
9 2 0.06
10 21 0.66
11 3 0.09
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (10 bp):
TATTATAATA
Found at i:7131346 original size:18 final size:18
Alignment explanation
Indices: 7131323--7131358 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7131313 CAGTAGCACT
7131323 ATAATGTATTTTTGGGGC
1 ATAATGTATTTTTGGGGC
7131341 ATAATGTATTTTTGGGGC
1 ATAATGTATTTTTGGGGC
7131359 TATGATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.28, T:0.44
Consensus pattern (18 bp):
ATAATGTATTTTTGGGGC
Found at i:7133999 original size:14 final size:14
Alignment explanation
Indices: 7133980--7134009 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7133970 TCTACAATTG
*
7133980 TTAATTTAGTGTAT
1 TTAATTTAGTATAT
7133994 TTAATTTAGTATAT
1 TTAATTTAGTATAT
7134008 TT
1 TT
7134010 TTAGACTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (14 bp):
TTAATTTAGTATAT
Found at i:7140368 original size:69 final size:70
Alignment explanation
Indices: 7140258--7140391 Score: 216
Period size: 69 Copynumber: 1.9 Consensus size: 70
7140248 TAGTTTATTA
* * * * *
7140258 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
7140323 CTTAG
66 CTTAG
7140328 CTAATTAATATGCTACTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
7140392 TTATGTGCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 37 0.63
70 22 0.37
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:7141515 original size:45 final size:45
Alignment explanation
Indices: 7141453--7141714 Score: 352
Period size: 45 Copynumber: 5.9 Consensus size: 45
7141443 TTGATTTGAT
* *
7141453 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
7141498 TATTCGGGCCTTCGAGCCTAGCAGGCAATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
7141543 TATTTGGGCCTTAGAGCCTAGCAGGCTACAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
7141588 TATTTGGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
** * *
7141633 TATTCGGGATTTCGAGCCTAGTAGGCTATAATGCCGGTGA-A-AA
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
7141676 GATATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 TAT-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
7141715 ATGAATTCGG
Statistics
Matches: 196, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
42 10 0.05
43 18 0.09
44 6 0.03
45 162 0.83
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:7144632 original size:58 final size:55
Alignment explanation
Indices: 7144570--7144705 Score: 150
Period size: 55 Copynumber: 2.4 Consensus size: 55
7144560 TTAATTCATA
* * *
7144570 TAATAACAATTATATTAAGAATTTTATTAAA-TTATATATTATTTTGTTAAATTATATT
1 TAATAATAATTATATTAA-AATTTGATTAAATTTAT-TA-T-TTTTATTAAATTATATT
* * * *
7144628 TAATAATAATTATGTTAAAATATGGTTAAATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTATATTAAAATTTGATTAAATTTATTATTTTTATTAAATTATATT
7144683 TAATAATAATCT-TATTAAAATTT
1 TAATAATAAT-TATATTAAAATTT
7144706 AATAACAATA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
55 34 0.51
56 2 0.03
57 11 0.16
58 20 0.30
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (55 bp):
TAATAATAATTATATTAAAATTTGATTAAATTTATTATTTTTATTAAATTATATT
Found at i:7157715 original size:15 final size:15
Alignment explanation
Indices: 7157695--7157724 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7157685 GAGTCCTAAG
*
7157695 AAAATAGAATTAGAA
1 AAAATAGAAATAGAA
7157710 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
7157725 TTTTTAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (15 bp):
AAAATAGAAATAGAA
Found at i:7158658 original size:30 final size:30
Alignment explanation
Indices: 7158622--7158680 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
7158612 TGCGGAAGAT
7158622 AATTTTTATTAAAAGAAAAGGATGATTCTA
1 AATTTTTATTAAAAGAAAAGGATGATTCTA
7158652 AATTTTTATTAAAAGAAAAGGATGATTCT
1 AATTTTTATTAAAAGAAAAGGATGATTCT
7158681 TACAAAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (30 bp):
AATTTTTATTAAAAGAAAAGGATGATTCTA
Found at i:7162676 original size:46 final size:50
Alignment explanation
Indices: 7162616--7162781 Score: 137
Period size: 52 Copynumber: 3.3 Consensus size: 50
7162606 TAGCCTTGCC
* * * *
7162616 ATGGTCTTACACGGATCACA-TAT-CAT-ACA-GATGCTATATCCCAGAT
1 ATGGTCTTATACGGATCACATTATACATCACACAATGCCATAACCCAGAT
*
7162662 ATGGTCTTATACGGAATCACATTATCACATCACACCAATGCCATAACCCAGCT
1 ATGGTCTTATACGG-ATCACATTAT-ACATCACA-CAATGCCATAACCCAGAT
* * * * *
7162715 ATGGTCTTATACGGA-AATATGTATCACATTTCAC-CAATGCCATAGCTCAGCT
1 ATGGTCTTATACGGATCACAT-TAT-ACA--TCACACAATGCCATAACCCAGAT
7162767 ATGGTCTTATACGGA
1 ATGGTCTTATACGGA
7162782 AGCACATATT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
46 13 0.13
47 6 0.06
48 3 0.03
50 3 0.03
51 6 0.06
52 39 0.39
53 27 0.27
54 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (50 bp):
ATGGTCTTATACGGATCACATTATACATCACACAATGCCATAACCCAGAT
Found at i:7162766 original size:52 final size:52
Alignment explanation
Indices: 7162646--7162796 Score: 180
Period size: 52 Copynumber: 2.9 Consensus size: 52
7162636 TATCATACAG
* * *
7162646 ATGCTATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACCA
1 ATGCCATAACCCAGCTATGGTCTTATACGGAA-CACATTATCACATCACACCA
* **
7162699 ATGCCATAACCCAGCTATGGTCTTATACGGAA-ATATGTATCACATTTCACCA
1 ATGCCATAACCCAGCTATGGTCTTATACGGAACACAT-TATCACATCACACCA
* * *
7162751 ATGCCATAGCTCAGCTATGGTCTTATACGGAAGCACA-TATTACATC
1 ATGCCATAACCCAGCTATGGTCTTATACGGAA-CACATTATCACATC
7162797 TTTTCCGTCA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
51 3 0.04
52 50 0.60
53 29 0.35
54 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (52 bp):
ATGCCATAACCCAGCTATGGTCTTATACGGAACACATTATCACATCACACCA
Found at i:7162938 original size:24 final size:26
Alignment explanation
Indices: 7162905--7162954 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
7162895 AATGTTCAAT
7162905 TACATAGCCCAA-ATTCAAAACCCTA
1 TACATAGCCCAATATTCAAAACCCTA
*
7162930 TACA-AGCCCAATATTCAAGACCCTA
1 TACATAGCCCAATATTCAAAACCCTA
7162955 AAACCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.42, C:0.32, G:0.06, T:0.20
Consensus pattern (26 bp):
TACATAGCCCAATATTCAAAACCCTA
Found at i:7165325 original size:131 final size:131
Alignment explanation
Indices: 7165129--7165461 Score: 462
Period size: 131 Copynumber: 2.6 Consensus size: 131
7165119 TAATTATTCA
*
7165129 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTC-TTAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCTTATC
* * *
7165194 GTGCTGGGTTACAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATG-
65 GTGCTGGGTTACAATTACCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
7165258 TC
130 TC
*
7165260 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTT-AAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCTTATC
* * *
7165325 GTTCTGGGTTGCAATTACCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCATTCATGT
65 GTGCTGGGTTACAATTACCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
7165390 TC
130 TC
* * * * * **
7165392 TCT--GAATTC-TAAAA-TAAGGCAATGTTCGATGTCTAGAAATTCGGGGAATCGTGCCTTA-CT
1 TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCTTATC-
7165452 GTGCTGGGTT
65 GTGCTGGGTT
7165462 TCAGTTTTTT
Statistics
Matches: 182, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
126 1 0.01
127 47 0.26
128 4 0.02
129 1 0.01
130 7 0.04
131 118 0.65
132 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTAAAACGAAGGCAATGTTCGATGTTTGGCCATTCGGGGAATCGTGCCTTATCG
TGCTGGGTTACAATTACCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTT
C
Found at i:7166962 original size:19 final size:19
Alignment explanation
Indices: 7166938--7166983 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7166928 CTTTCTTTCC
7166938 TTTGCATT-CATCCCATGCA
1 TTTGCATTGCATCCCAT-CA
**
7166957 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCCCATCA
7166976 TTTGCATT
1 TTTGCATT
7166984 AGATTTTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCCCATCA
Found at i:7169040 original size:8 final size:9
Alignment explanation
Indices: 7169003--7169041 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7168993 ATCAAATTCC
*
7169003 AAAATAAAA
1 AAAATAACA
7169012 AAAATAA-A
1 AAAATAACA
7169020 AAAATAACA
1 AAAATAACA
*
7169029 AAAAAAACA
1 AAAATAACA
7169038 AAAA
1 AAAA
7169042 GATGCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.87, C:0.05, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAATAACA
Found at i:7169040 original size:17 final size:17
Alignment explanation
Indices: 7169002--7169040 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7168992 CATCAAATTC
7169002 CAAAATAAAAAAAATAA
1 CAAAATAAAAAAAATAA
*
7169019 AAAAATAACAAAAAA-AA
1 CAAAATAA-AAAAAATAA
7169036 CAAAA
1 CAAAA
7169041 AGATGCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (17 bp):
CAAAATAAAAAAAATAA
Found at i:7170881 original size:22 final size:24
Alignment explanation
Indices: 7170837--7170881 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
7170827 TAGGAGCATT
7170837 TAATTCATTTCGATCATAGCATCC
1 TAATTCATTTCGATCATAGCATCC
7170861 TAATT-ATTT-GA-CATAAGCATC
1 TAATTCATTTCGATCAT-AGCATC
7170882 ACATCTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.15
22 8 0.40
23 4 0.20
24 5 0.25
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (24 bp):
TAATTCATTTCGATCATAGCATCC
Found at i:7170934 original size:64 final size:64
Alignment explanation
Indices: 7170817--7170940 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
7170807 ATATTCATAA
*
7170817 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCAT
* * * *
7170881 CACATCTAGTTAGGAGCATTTAATTCATTTTGATCATAGCATCTTAGTCATTTGGCATAA
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATCATTTGACATAA
7170941 ACATAGGCAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCAT
Found at i:7171277 original size:44 final size:44
Alignment explanation
Indices: 7171053--7171278 Score: 100
Period size: 44 Copynumber: 5.1 Consensus size: 44
7171043 AACCCTGACC
*
7171053 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCT
** * * ** * * * ** **
7171097 CCCTAAACAATAGTGG-AGCAAATCGAAGA-AGCAGGCCTTAACT
1 CCCTAAGTAGTAG-GGTAACAGGTTGAAGATTGTAGATCTTGTCT
* * * * * *
7171140 CCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTTGTTT
1 CCCTAAGTAGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCT
* * * * ** * * ** *
7171184 CCTTGAAGTTGCAGTGG-AACAGATCAAAGATGGT-GAGCCTTAACC
1 CCCT-AAGTAGTAG-GGTAACAGGTTGAAGATTGTAGA-TCTTGTCT
*
7171229 CCCTAAGTGGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCT
1 CCCTAAGTAGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCT
7171273 CCCTAA
1 CCCTAA
7171279 ACAGTAGTAG
Statistics
Matches: 118, Mismatches: 56, Indels: 16
0.62 0.29 0.08
Matches are distributed among these distances:
42 2 0.02
43 25 0.21
44 62 0.53
45 27 0.23
46 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (44 bp):
CCCTAAGTAGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCT
Found at i:7171344 original size:88 final size:87
Alignment explanation
Indices: 7171050--7171713 Score: 654
Period size: 88 Copynumber: 7.6 Consensus size: 87
7171040 GCAAACCCTG
* * *
7171050 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAATAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
* *
7171115 CAAATCGAAGAAGCAGGCCTTA
66 CAAATCAAAGAAGCAAGCCTTA
* * * * * *** *
7171137 ACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTTGTTTCCTTGAAGTTGCAGTGGA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAACAGTAGTGGA
* * * **
7171202 ACAGATCAAAGATGGTGAGCCTTA
65 GCAAATCAAAGA-AGCAAGCCTTA
* * *
7171226 ACCCCCTAAGTGGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTAGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
*
7171291 CAAATCGAAGAAGCAAGCCTTAA
66 CAAATCAAAGAAGCAAGCCTT-A
* * * * * *** *
7171314 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTTTGTTTTCCTGAAGTTGCAGTGGA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAACAGTAGTGGA
* * **
7171379 ACAGATCAAAGACAGTGAGCCTTA
65 GCAAATCAAAGA-AGCAAGCCTTA
* *** *
7171403 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGATCATAGATC-T-TATCCCTAAACAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
* *
7171465 TAAATCTAAGAAGCAAGCCTTA
66 CAAATCAAAGAAGCAAGCCTTA
* * *
7171487 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGC-TTCAGTGG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCT-AAACAGT-AGTGG
** * * **
7171551 AATAGATCAAAGACGGTGAGCCTTA
64 AGCAAATCAAAGA-AGCAAGCCTTA
* * * * * *
7171576 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
*
7171641 CAAATCGAAGAAGCAAGCCTTA
66 CAAATCAAAGAAGCAAGCCTTA
* * *
7171663 ACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCA-AGTCTTGTCTCCCT
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGA-TCTTGTCTCCCT
7171714 GAAATTACAA
Statistics
Matches: 453, Mismatches: 111, Indels: 26
0.77 0.19 0.04
Matches are distributed among these distances:
84 10 0.02
85 51 0.11
86 7 0.02
87 108 0.24
88 145 0.32
89 124 0.27
90 8 0.02
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (87 bp):
ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCTAAACAGTAGTGGAG
CAAATCAAAGAAGCAAGCCTTA
Found at i:7171410 original size:176 final size:176
Alignment explanation
Indices: 7171050--7171780 Score: 1040
Period size: 176 Copynumber: 4.2 Consensus size: 176
7171040 GCAAACCCTG
* *
7171050 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAATAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAG
* * * *
7171115 CAAATCGAAGAAGCAGGCCTTAACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
* * *
7171180 GTTTCCTTGAAGTTGCAGTGGAACAGATCAAAGATGGTGAGCCTTA
131 GTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTA
* *
7171226 ACCCCCTAAGTGGTAGGGTAACAGGTTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTAGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAG
*
7171291 CAAATCGAAGAAGCAAGCCTTAAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTT
66 CAAATCGAAGAAGCAAGCCTT-AACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCT
* * *
7171356 TGTTTTCCTGAAGTTGCAGTGGAACAGATCAAAGACAGTGAGCCTTA
130 TGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTA
* ** *
7171403 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGATCATAGATC-T-TATCCCTAAACAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAG
* * *
7171465 TAAATCTAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
*
7171530 GTCTCCCTGAAGCTT-CAGTGGAATAGATCAAAGACGGTGAGCCTTA
131 GTCTCCCTGAAG-TTGCAGTGGAACAGATCAAAGACGGTGAGCCTTA
* * * * *
7171576 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAG
* * * * *
7171641 CAAATCGAAGAAGCAAGCCTTAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAGTCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
* * * ** * *
7171706 GTCTCCCTGAAATTACAATGGAACAGATTGAAGATGATGAGCCTTA
131 GTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTA
*
7171752 ACCCCCTAAGTAGTAGGGTAACA-GCTGAA
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAA
7171781 ATTTGCAAGT
Statistics
Matches: 498, Mismatches: 51, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
173 82 0.16
174 74 0.15
175 10 0.02
176 249 0.50
177 83 0.17
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (176 bp):
ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAG
CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATCTT
GTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTA
Found at i:7171760 original size:350 final size:353
Alignment explanation
Indices: 7171050--7171780 Score: 1071
Period size: 350 Copynumber: 2.1 Consensus size: 353
7171040 GCAAACCCTG
** *
7171050 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCCCTAAACAATAGTGGAG
1 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATCATAGATCTTGTATCCCTAAACAATAGTGGAG
* * *
7171115 CAAATCGAAGAAGCAGGCCTTAACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
* * *
7171180 GTTTCCTTGAAGTTGCAGTGGAACAGATCAAAGATGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
131 GTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
* * * *
7171245 AACAGGTTGAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
196 AACAGGCTGAAGAGTGTAGATATTATCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
* * * * * * * * * *
7171310 TTAAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAATTTTGTTTTCCTGAAGTTGCAG
261 TTAAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAATTACAA
7171375 TGGAACAGATCAAAGACAGTGAGCCTTA
326 TGGAACAGATCAAAGACAGTGAGCCTTA
* * *
7171403 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGATCATAGATC-T-TATCCCTAAACAGTAGTGGAG
1 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATCATAGATCTTGTATCCCTAAACAATAGTGGAG
* *
7171465 TAAATCTAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
66 CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
*
7171530 GTCTCCCTGAAGCTT-CAGTGGAATAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGG
131 GTCTCCCTGAAG-TTGCAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGG
* * *
7171594 TAACAGGCTGAAGAGTGTAGATATTATCTCCTTAAATAGTAGTGGAGCAAATCGAAGAAGCAAGC
195 TAACAGGCTGAAGAGTGTAGATATTATCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGC
*
7171659 CTT-AACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAGTCTTGTCTCCCTGAAATTACA
260 CTTAAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAATTACA
** *
7171723 ATGGAACAGATTGAAGA-TGATGAGCCTTA
325 ATGGAACAGATCAAAGACAG-TGAGCCTTA
7171752 ACCCCCTAAGTAGTAGGGTAACA-GCTGAA
1 ACCCCCTAAGTAGTAGGGTAACAGGCTGAA
7171781 ATTTGCAAGT
Statistics
Matches: 337, Mismatches: 38, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
348 1 0.00
349 81 0.24
350 216 0.64
351 3 0.01
352 35 0.10
353 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (353 bp):
ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATCATAGATCTTGTATCCCTAAACAATAGTGGAG
CAAATCGAAGAAGCAAGCCTTAACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAGATCTT
GTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTGGTAGGGT
AACAGGCTGAAGAGTGTAGATATTATCTCCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCC
TTAAACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAATCTTGTCTCCCTGAAATTACAA
TGGAACAGATCAAAGACAGTGAGCCTTA
Found at i:7171826 original size:88 final size:90
Alignment explanation
Indices: 7171050--7171828 Score: 603
Period size: 88 Copynumber: 8.9 Consensus size: 90
7171040 GCAAACCCTG
* * * * *
7171050 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTG-TAGATCTTGTCTCCCTAAACAAT--AGTG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAA-ATTGCAGTG
* * *
7171112 GAGCAAATCGAAGAAGCA-G-GCCTTA
65 GAACAGATCGAAGATG-ATGAGCCTTA
* * * * * * *
7171137 ACTCCTTAAGTGGTAGGGTGACAGGCTGAAGATTGC-AGATCTTGTTTCCTTGAAGTTGCAGTGG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAAATTGCAGTGG
* *
7171201 AACAGATCAAAGATGGTGAGCCTTA
66 AACAGATCGAAGATGATGAGCCTTA
* * * ** * *
7171226 ACCCCCTAAGTGGTAGGGTAACAGGTTGAAGATTG-TAGATCTTGTCTCCCT-AAACAGTAGTAG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAAATTGCAGTGG
* * *
7171289 AGCAAATCGAAGAAGCA--AGCCTTAA
66 AACAGATCGAAGATG-ATGAGCCTT-A
* * * * * *
7171314 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAA-ATTTTGTTTTCCTGAAGTTGCAGTGG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAAATTGCAGTGG
* *
7171378 AACAGATCAAAGA-CAGTGAGCCTTA
66 AACAGATCGAAGATGA-TGAGCCTTA
* ** *
7171403 A-CCCCTAAGTGGTAGAGTAACAGGCTGAAGA-T-CATAGATCTTA--TCCCT-AAACAGTAGTG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCA-AGATCTTATCTCCCTGAAATTGCAGTG
** * * *
7171462 GAGTAAATCTAAGAAGCA--AGCCTTA
65 GAACAGATCGAAGATG-ATGAGCCTTA
* * *
7171487 ACTCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGC-AGATCTTGTCTCCCTGAAGCTT-CAGTG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAA-ATTGCAGTG
* * * *
7171550 GAATAGATCAAAGACGGTGAGCCTTA
65 GAACAGATCGAAGATGATGAGCCTTA
* * * * * *
7171576 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGAGTG-TAGATATTATCT-CCTTAAATAGTAGTGG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAAATTGCAGTGG
* * *
7171639 AGCAAATCGAAGAAGCA--AGCCTTA
66 AACAGATCGAAGATG-ATGAGCCTTA
* * * * * *
7171663 ACCCCCTAAATGGTAAGATAACAGGCTGAAGATTGCAAG-TCTTGTCTCCCTGAAATTACAATGG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAAATTGCAGTGG
*
7171727 AACAGATTGAAGATGATGAGCCTTA
66 AACAGATCGAAGATGATGAGCCTTA
* * *
7171752 ACCCCCTAAGTAGTAGGGTAACA-GCTGAA-ATTTGCAAG-TCTTATCTCCCTGAAGTTGCAGCG
1 ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGA-TTGCAAGATCTTATCTCCCTGAAATTGCAGTG
*
7171814 GAGCAGA-CTGAAGAT
65 GAACAGATC-GAAGAT
7171829 AGCAGACCTT
Statistics
Matches: 545, Mismatches: 112, Indels: 69
0.75 0.15 0.10
Matches are distributed among these distances:
84 8 0.01
85 52 0.10
86 8 0.01
87 109 0.20
88 217 0.40
89 145 0.27
90 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (90 bp):
ACCCCCTAAGTGGTAGGGTAACAGGCTGAAGATTGCAAGATCTTATCTCCCTGAAATTGCAGTGG
AACAGATCGAAGATGATGAGCCTTA
Found at i:7172212 original size:24 final size:26
Alignment explanation
Indices: 7172179--7172228 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
7172169 AATGTCCAAT
7172179 TACATAGCCCAA-ATTCAAAACCCTA
1 TACATAGCCCAATATTCAAAACCCTA
*
7172204 TACA-AGCCCAATATTCAAGACCCTA
1 TACATAGCCCAATATTCAAAACCCTA
7172229 AAACCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.42, C:0.32, G:0.06, T:0.20
Consensus pattern (26 bp):
TACATAGCCCAATATTCAAAACCCTA
Found at i:7174628 original size:131 final size:131
Alignment explanation
Indices: 7174432--7174692 Score: 443
Period size: 131 Copynumber: 2.0 Consensus size: 131
7174422 TAATTATTCA
* *
7174432 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCCATTCAGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCCATTCAGGGAAACGTGCCCTATC
7174497 GTGCTGGGTTGCAATTTCCCGTTCATTCAAAATAATCGAATATTCCTTT-GAAATTTCACTCATG
66 GTGCTGGGTTGCAATTTCCCGTTCATTCAAAATAATCGAATATTCCTTTAG-AATTTCACTCATG
7174561 TC
130 TC
* *
7174563 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCCATTCGGGGAAACGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCCATTCAGGGAAACGTGCCCTATC
* **
7174628 GTTCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTCATTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
7174693 TCTCTGAATT
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
131 121 0.99
132 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCCATTCAGGGAAACGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTCATTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
C
Found at i:7177736 original size:8 final size:8
Alignment explanation
Indices: 7177723--7177768 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
7177713 AGATCGGCAC
7177723 AAGCCGAA
1 AAGCCGAA
7177731 AAGCCGAA
1 AAGCCGAA
*
7177739 ATGCCGAA
1 AAGCCGAA
**
7177747 AAGCTTAA
1 AAGCCGAA
*
7177755 ATGCCGAA
1 AAGCCGAA
7177763 AAGCCG
1 AAGCCG
7177769 GTATTTTGAG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.43, C:0.24, G:0.24, T:0.09
Consensus pattern (8 bp):
AAGCCGAA
Found at i:7177746 original size:16 final size:16
Alignment explanation
Indices: 7177725--7177768 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
7177715 ATCGGCACAA
7177725 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
**
7177741 GCCGAAAAGCTTAAAT
1 GCCGAAAAGCCGAAAT
7177757 GCCGAAAAGCCG
1 GCCGAAAAGCCG
7177769 GTATTTTGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.41, C:0.25, G:0.25, T:0.09
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:7178237 original size:54 final size:54
Alignment explanation
Indices: 7178155--7178298 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
7178145 TGGAGGAAGC
7178155 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
7178209 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
7178263 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
7178299 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:7178309 original size:27 final size:27
Alignment explanation
Indices: 7178158--7178316 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
7178148 AGGAAGCGTC
*
7178158 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
7178185 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
7178212 CTAGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
7178239 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
7178266 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
7178293 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
7178317 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:7178310 original size:81 final size:80
Alignment explanation
Indices: 7178158--7178316 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
7178148 AGGAAGCGTC
*
7178158 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGACTAT
7178223 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
7178239 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTAGTGACT
*
7178302 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
7178317 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
80 17 0.25
81 52 0.75
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGACTAT
GCCACAATATCTGAT
Found at i:7188180 original size:17 final size:16
Alignment explanation
Indices: 7188159--7188211 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
7188149 AATATATGAA
7188159 AAAAATTAAAAAATCTTT
1 AAAAA-TAAAAAAT-TTT
7188177 AAAAATAAAAATATTTT
1 AAAAATAAAAA-ATTTT
7188194 AAAAATATAAAAATTTT
1 AAAAATA-AAAAATTTT
7188211 A
1 A
7188212 GACCGAACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAAATAAAAAATTTT
Found at i:7188180 original size:18 final size:18
Alignment explanation
Indices: 7188140--7188207 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 18
7188130 ATTTTTATAA
***
7188140 AAAAATTAAAATATATGAA
1 AAAAATTAAAA-ATATTTT
7188159 AAAAATTAAAAA-ATCTTT
1 AAAAATTAAAAATAT-TTT
7188177 AAAAA-TAAAAATATTTT
1 AAAAATTAAAAATATTTT
7188194 AAAAATATAAAAAT
1 AAAAAT-TAAAAAT
7188208 TTTAGACCGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 16 0.38
18 8 0.19
19 18 0.43
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATATTTT
Found at i:7193686 original size:27 final size:27
Alignment explanation
Indices: 7193655--7193832 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7193645 TAAATTGTAC
7193655 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7193682 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7193708 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7193736 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7193764 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7193791 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7193818 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7193833 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7193769 original size:82 final size:81
Alignment explanation
Indices: 7193656--7193811 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7193646 AAATTGTACA
* *
7193656 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7193720 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7193737 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7193802 TGCGAGTTGA
65 TGCGAATTGA
7193812 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7193823 original size:82 final size:81
Alignment explanation
Indices: 7193652--7193832 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7193642 GATTAAATTG
* *
7193652 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7193717 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7193733 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7193797 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7193815 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7193833 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7201738 original size:27 final size:27
Alignment explanation
Indices: 7201707--7201884 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7201697 TAAATTGTAC
7201707 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7201734 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7201760 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7201788 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7201816 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7201843 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7201870 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7201885 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7201821 original size:82 final size:81
Alignment explanation
Indices: 7201708--7201863 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7201698 AAATTGTACA
* *
7201708 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7201772 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7201789 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7201854 TGCGAGTTGA
65 TGCGAATTGA
7201864 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7201875 original size:82 final size:81
Alignment explanation
Indices: 7201704--7201884 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7201694 GATTAAATTG
* *
7201704 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7201769 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7201785 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7201849 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7201867 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7201885 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7213235 original size:22 final size:23
Alignment explanation
Indices: 7213210--7213284 Score: 68
Period size: 22 Copynumber: 3.3 Consensus size: 23
7213200 TTAAATAATC
7213210 AAATATAATA-AATAATATTTAA
1 AAATATAATATAATAATATTTAA
*
7213232 AAAT-TAATATAA-AGATATTCAA
1 AAATATAATATAATA-ATATTTAA
* * *
7213254 ATAATTTAATATAATGATATAT-A
1 A-AATATAATATAATAATATTTAA
7213277 AAATATAA
1 AAATATAA
7213285 ATTAATCTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
21 6 0.14
22 20 0.47
23 5 0.12
24 12 0.28
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (23 bp):
AAATATAATATAATAATATTTAA
Found at i:7213240 original size:26 final size:27
Alignment explanation
Indices: 7213177--7213243 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 27
7213167 AATTTTTTTT
7213177 AAATTAATA-ATATATAAAATATTTTAA
1 AAATTAATATA-ATATAAAATATTTTAA
*
7213204 ATAATCAAATATAATA-AATAATA-TTTAA
1 A-AAT-TAATATAATATAA-AATATTTTAA
7213232 AAATTAATATAA
1 AAATTAATATAA
7213244 AGATATTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
26 7 0.21
27 4 0.12
28 11 0.32
29 11 0.32
30 1 0.03
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (27 bp):
AAATTAATATAATATAAAATATTTTAA
Found at i:7214273 original size:23 final size:22
Alignment explanation
Indices: 7214202--7214277 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 22
7214192 ATTTTTCCCC
7214202 AATTCAACTTTTTTTTGTCTCTAT
1 AATTCAAC--TTTTTTGTCTCTAT
** *
7214226 AATTTGA-TTTGTTTGTCCCTAT
1 AATTCAACTTT-TTTGTCTCTAT
*
7214248 AATTCAACCTTTTTTGTCTCTGT
1 AATTCAA-CTTTTTTGTCTCTAT
7214271 AATTCAA
1 AATTCAA
7214278 AATTTATTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
21 3 0.07
22 15 0.36
23 16 0.38
24 8 0.19
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (22 bp):
AATTCAACTTTTTTGTCTCTAT
Found at i:7225196 original size:96 final size:96
Alignment explanation
Indices: 7225030--7225220 Score: 265
Period size: 96 Copynumber: 2.0 Consensus size: 96
7225020 GTGTCCGAGG
* ** * * * * *
7225030 AAGTCTGTTATCGATGGGAATGATCAAGCAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAAGGAACGATCAAGCAGACAAGGAGCCCAAAAAGCTTAGTTCGAGCAAGGG
7225095 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
* *
7225126 AAGTCTGTCATCGAAAGGAACGATGAAGCAGACAAGGAGCTCAAAAAGCTTAGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAAGGAACGATCAAGCAGACAAGGAGCCCAAAAAGCTTAGTTCGAGCAAGGG
* **
7225191 TAAAGCCGAAGCCAAGAGGGCTCAGAGGAG
66 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAG
7225221 TAAAAAGAAG
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.37, C:0.18, G:0.32, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAAGGAACGATCAAGCAGACAAGGAGCCCAAAAAGCTTAGTTCGAGCAAGGG
AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:7226856 original size:22 final size:22
Alignment explanation
Indices: 7226825--7226870 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7226815 CTTGATTATG
*
7226825 CTGTCTCTAGTACTGACATTCT
1 CTGTCCCTAGTACTGACATTCT
*
7226847 CTGTCCCTAGTATTGACATTCT
1 CTGTCCCTAGTACTGACATTCT
7226869 CT
1 CT
7226871 ATGAACTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.17, C:0.28, G:0.13, T:0.41
Consensus pattern (22 bp):
CTGTCCCTAGTACTGACATTCT
Found at i:7230483 original size:69 final size:69
Alignment explanation
Indices: 7230205--7230666 Score: 240
Period size: 69 Copynumber: 6.7 Consensus size: 69
7230195 TTCAACTTTT
* * * * * *
7230205 GCTAACTATGTTGGAGGTTAC-GATTTTTATCCTGTAAGCTTTAGTATGACAGTTG-GAAGATTT
1 GCTAACTATGTTGGAGGCTACAG-TTTTTATCCTGCAAGCCTTAATATGACAGCTGAG-AGCTTT
7230268 GCTCTC
64 GCTCTC
** * * * * * * * * *
7230274 ATTAA-T-TGCATTAGAAGCTGC-GATTTTTATCTTACGAGCTTTAGTATGACAACTGAGAGCTT
1 GCTAACTATG--TTGGAGGCTACAG-TTTTTATCCTGCAAGCCTTAATATGACAGCTGAGAGCTT
* *
7230336 TGCTTTT
63 TGCTCTC
* * * * *** ** * * * *
7230343 ACTAATTTTGTTGAAGGCTGTGGTTTTTATCCTATAATCCTTAGTAT--CAGCTGGGAGTTTTGC
1 GCTAACTATGTTGGAGGCTACAGTTTTTATCCTGCAAGCCTTAATATGACAGCTGAGAGCTTTGC
7230406 TCTC
66 TCTC
* * * * * *
7230410 GCTAATTACGTTGGAGGCTACGGTTTTTATCTTGCAAGTCTTAATATGACAGCTGAGAGCTTTAC
1 GCTAACTATGTTGGAGGCTACAGTTTTTATCCTGCAAGCCTTAATATGACAGCTGAGAGCTTTGC
7230475 TCTC
66 TCTC
* * * * * * ** * * * * *
7230479 GCTAATTGTGTTAGAGACTGCAATTTTTAT-CTTAAAGCTTTAATATGATAGTTGGGAGTTTTGC
1 GCTAACTATGTTGGAGGCTACAGTTTTTATCCTGCAAGCCTTAATATGACAGCTGAGAGCTTTGC
*
7230543 TCTT
66 TCTC
* * * *
7230547 GCTAACTATGTTGGAGGCTACAGTATTTATCCTACGAGCCTTAATATGAAAGCT-AGGAGCTTTG
1 GCTAACTATGTTGGAGGCTACAGTTTTTATCCTGCAAGCCTTAATATGACAGCTGA-GAGCTTTG
*
7230611 CTCTT
65 CTCTC
* * * * **
7230616 ACTAACTGTGTTGGAGGCTGCGGTTTTTATCCTGTGAGCCTTAATATGACA
1 GCTAACTATGTTGGAGGCTACAGTTTTTATCCTGCAAGCCTTAATATGACA
7230667 TAAATATTGC
Statistics
Matches: 297, Mismatches: 86, Indels: 20
0.74 0.21 0.05
Matches are distributed among these distances:
67 52 0.18
68 51 0.17
69 189 0.64
70 3 0.01
71 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.39
Consensus pattern (69 bp):
GCTAACTATGTTGGAGGCTACAGTTTTTATCCTGCAAGCCTTAATATGACAGCTGAGAGCTTTGC
TCTC
Found at i:7230590 original size:137 final size:137
Alignment explanation
Indices: 7230394--7230646 Score: 328
Period size: 137 Copynumber: 1.8 Consensus size: 137
7230384 TAGTATCAGC
* * * * * *
7230394 TGGGAGTTTTGCTCTCGCTAATTACGTTGGAGGCTACGGTTTTTATCTTGCAAGTCTTAATATGA
1 TGGGAGTTTTGCTCTCGCTAACTACGTTGGAGGCTACAGTATTTATCCTACAAGCCTTAATATGA
* * *
7230459 CAGCT-GAGAGCTTTACTCTCGCTAATTGTGTTAGAGACTGCAATTTTTATCTTAAAGCTTTAAT
66 AAGCTAG-GAGCTTTACTCTCACTAACTGTGTTAGAGACTGCAATTTTTATCTTAAAGCTTTAAT
7230523 ATGATAGT
130 ATGATAGT
* * *
7230531 TGGGAGTTTTGCTCTTGCTAACTATGTTGGAGGCTACAGTATTTATCCTACGAGCCTTAATATGA
1 TGGGAGTTTTGCTCTCGCTAACTACGTTGGAGGCTACAGTATTTATCCTACAAGCCTTAATATGA
* * * * **
7230596 AAGCTAGGAGCTTTGCTCTTACTAACTGTGTTGGAGGCTGCGGTTTTTATC
66 AAGCTAGGAGCTTTACTCTCACTAACTGTGTTAGAGACTGCAATTTTTATC
7230647 CTGTGAGCCT
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
137 96 0.99
138 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (137 bp):
TGGGAGTTTTGCTCTCGCTAACTACGTTGGAGGCTACAGTATTTATCCTACAAGCCTTAATATGA
AAGCTAGGAGCTTTACTCTCACTAACTGTGTTAGAGACTGCAATTTTTATCTTAAAGCTTTAATA
TGATAGT
Found at i:7243741 original size:7 final size:7
Alignment explanation
Indices: 7243729--7243757 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
7243719 GAGGGTTTTT
7243729 ATTTTAA
1 ATTTTAA
7243736 ATTTTAA
1 ATTTTAA
7243743 ATTTTAA
1 ATTTTAA
7243750 ATTTTAA
1 ATTTTAA
7243757 A
1 A
7243758 ACAGAGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTTAA
Found at i:7245576 original size:117 final size:117
Alignment explanation
Indices: 7245425--7245658 Score: 450
Period size: 117 Copynumber: 2.0 Consensus size: 117
7245415 CATGAACGGA
7245425 GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
1 GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
*
7245490 TGGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGTTGCTTCTGCAGAT
66 TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGTTGCTTCTGCAGAT
*
7245542 GAACTAAAAGATTTATTGAATGCTAGGGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
1 GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
7245607 TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGTTGCTTCTGCAGAT
66 TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGTTGCTTCTGCAGAT
7245659 AGAAACTTAT
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.26
Consensus pattern (117 bp):
GAACTAAAAGATTTATTGAATGCTAGAGACATGAAGCTTAATAGTGAGATTGATGAACTGAAAGA
TAGGCTGTCTGAGCCAAGGAAATCTGTTGAAGAGACAGTTGCTTCTGCAGAT
Found at i:7246086 original size:174 final size:174
Alignment explanation
Indices: 7245796--7246148 Score: 652
Period size: 174 Copynumber: 2.0 Consensus size: 174
7245786 AGGAAGCACT
*
7245796 TGAAATCAATGGTACCGGAGAAACAGAAGTTCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
1 TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
*
7245861 ATACAGTAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
66 ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
* *
7245926 GGGGCTACAGCTGGTCTTGATTCAGTGGATGGTGGAGATGAAGA
131 GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
* *
7245970 TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGATGAGGAAAAAATAAGTCTCAAGTCTG
1 TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
7246035 ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
66 ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
7246100 GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
131 GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
7246144 TGAAA
1 TGAAA
7246149 AAGCAAATAA
Statistics
Matches: 173, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 173 1.00
ACGTcount: A:0.38, C:0.13, G:0.30, T:0.19
Consensus pattern (174 bp):
TGAAATCAATGGTACCGGAGAAACAGAAGTCCCAAGGGACGAGGAAAAAAGAAGTCTCAAGTCTG
ATACAGCAATTGAGATGCCTGTAAAAGGAGATACTGATCAGGGACAAGAGTGTACAGAAGTAAAA
GGGGCTACAGCTGGTCTTGATCCAGTGGATAGTGGAGATGAAGA
Found at i:7254376 original size:11 final size:10
Alignment explanation
Indices: 7254353--7254386 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
7254343 AATTTATGCA
7254353 ATTTATATAT
1 ATTTATATAT
7254363 ATTTATATTAT
1 ATTTATA-TAT
7254374 ATTTA-ATAT
1 ATTTATATAT
7254383 ATTT
1 ATTT
7254387 TCATTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.30
10 8 0.35
11 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTTATATAT
Found at i:7254439 original size:16 final size:14
Alignment explanation
Indices: 7254406--7254432 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7254396 ATTTTTTAGA
7254406 ATATTTAAAAATTT
1 ATATTTAAAAATTT
7254420 ATATTTAAAAATT
1 ATATTTAAAAATT
7254433 ATTATATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATTTAAAAATTT
Found at i:7254726 original size:99 final size:99
Alignment explanation
Indices: 7254591--7254781 Score: 373
Period size: 99 Copynumber: 1.9 Consensus size: 99
7254581 GGATTATTAA
7254591 ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
1 ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
7254656 CTCTTATGTCATAACCATGACAATATACATATAT
66 CTCTTATGTCATAACCATGACAATATACATATAT
*
7254690 ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGACTAGAACCGACAT
1 ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
7254755 CTCTTATGTCATAACCATGACAATATA
66 CTCTTATGTCATAACCATGACAATATA
7254782 AAAATGAAAT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 91 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.32
Consensus pattern (99 bp):
ATGGTGATTTTTGAATTTTCCATATACATATATAGAAATAGAAAAAGATAGAATAGAACCGACAT
CTCTTATGTCATAACCATGACAATATACATATAT
Found at i:7255617 original size:16 final size:16
Alignment explanation
Indices: 7255598--7255628 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7255588 ATAGAAAATA
7255598 AATATAATATGTAAAC
1 AATATAATATGTAAAC
*
7255614 AATATACTATGTAAA
1 AATATAATATGTAAA
7255629 TGAATAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (16 bp):
AATATAATATGTAAAC
Found at i:7256320 original size:25 final size:25
Alignment explanation
Indices: 7256291--7256342 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
7256281 CAGTTTTAAG
7256291 TTTATATTAAATATTATTTTTATGA
1 TTTATATTAAATATTATTTTTATGA
7256316 TTTATATTAAATATTATTTTTATGA
1 TTTATATTAAATATTATTTTTATGA
7256341 TT
1 TT
7256343 CTAACAAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTATATTAAATATTATTTTTATGA
Found at i:7256544 original size:22 final size:21
Alignment explanation
Indices: 7256506--7256553 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
7256496 GTTTTACTTA
*
7256506 ATTATGATTAATGTTTTTAGGG
1 ATTATGATTAAT-ATTTTAGGG
7256528 ATTATGATTGAA-ATTTTAGGG
1 ATTATGATT-AATATTTTAGGG
*
7256549 TTTAT
1 ATTAT
7256554 ACCAAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.52
22 9 0.39
23 2 0.09
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (21 bp):
ATTATGATTAATATTTTAGGG
Found at i:7270699 original size:36 final size:36
Alignment explanation
Indices: 7270659--7270743 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 36
7270649 TTATTTGATT
* * * *
7270659 TTATATGCGAGCCGTGATATCTGAACCATGTGTTTA
1 TTATATGCGAGCCATGATATCTGAACCATATATTGA
** * *
7270695 TTATATATGAGCCATGTTATGTGAACCATATATTGA
1 TTATATGCGAGCCATGATATCTGAACCATATATTGA
7270731 TTATATGCGAGCC
1 TTATATGCGAGCC
7270744 TATATACGAA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (36 bp):
TTATATGCGAGCCATGATATCTGAACCATATATTGA
Found at i:7270801 original size:29 final size:29
Alignment explanation
Indices: 7270739--7270836 Score: 110
Period size: 29 Copynumber: 3.4 Consensus size: 29
7270729 GATTATATGC
* * *
7270739 GAGCCTATATACGAACCCTA-GAATTATGCA
1 GAGCCTACATGCGAACCCTAGGAA-CATG-A
* *
7270769 -AGCCTATATGTGAACCCTAGGAACATGA
1 GAGCCTACATGCGAACCCTAGGAACATGA
*
7270797 GAGCCTACATGCGAACCCTAGGTACATGA
1 GAGCCTACATGCGAACCCTAGGAACATGA
7270826 GAGCCTACATG
1 GAGCCTACATG
7270837 TGAGCCTATG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
28 1 0.02
29 56 0.93
30 3 0.05
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (29 bp):
GAGCCTACATGCGAACCCTAGGAACATGA
Found at i:7270901 original size:70 final size:70
Alignment explanation
Indices: 7270769--7270902 Score: 182
Period size: 70 Copynumber: 1.9 Consensus size: 70
7270759 GAATTATGCA
*
7270769 AGCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCGAACCCTAGGTACATGAGAGCCTAC
1 AGCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCGAACCCTAGGTACATGAAAGCCTAC
7270834 ATGTG
66 ATGTG
* * * * *
7270839 AGCCTATGTGTGAACCCTAGGAACTTGCGAGTCTAGATGC-AACCCCTAGGTACAT-ACAAGCCT
1 AGCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCGAA-CCCTAGGTACATGA-AAGCCT
7270902 A
64 A
7270903 TATGATCATG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
69 3 0.05
70 53 0.95
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (70 bp):
AGCCTATATGTGAACCCTAGGAACATGAGAGCCTACATGCGAACCCTAGGTACATGAAAGCCTAC
ATGTG
Found at i:7272826 original size:27 final size:26
Alignment explanation
Indices: 7272795--7272901 Score: 80
Period size: 24 Copynumber: 4.2 Consensus size: 26
7272785 TGGTTCTTAC
*
7272795 GAGCTTCCCGATTAA-AGGCTCTTTCG
1 GAGCTTCCCGATTAATAGGCTCTCT-G
** *
7272821 TGAGCTTCTTGATTAATTGGCTCTCTG
1 -GAGCTTCCCGATTAATAGGCTCTCTG
* * *
7272848 GAGCTTCCCGA-T-ATTGGCTCGCTT
1 GAGCTTCCCGATTAATAGGCTCTCTG
* *
7272872 GAACTTCCCG-TTAAT-GGCTCTCCG
1 GAGCTTCCCGATTAATAGGCTCTCTG
7272896 GAGCTT
1 GAGCTT
7272902 TCTGTTACAT
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
24 31 0.48
25 3 0.05
26 9 0.14
27 14 0.22
28 7 0.11
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (26 bp):
GAGCTTCCCGATTAATAGGCTCTCTG
Found at i:7273732 original size:13 final size:13
Alignment explanation
Indices: 7273714--7273739 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7273704 GGGATTTGTT
7273714 TTAACTAAACTAA
1 TTAACTAAACTAA
7273727 TTAACTAAACTAA
1 TTAACTAAACTAA
7273740 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:7277407 original size:29 final size:28
Alignment explanation
Indices: 7277343--7277407 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
7277333 TTTATTTCAT
* **
7277343 AAATAAATAATTTTGTTTTATTATATGA
1 AAATAAATAATTTTATTTTAAAATATGA
*
7277371 AATTAAAT-ATTTTATATTTAAAATAGTGA
1 AAATAAATAATTTTAT-TTTAAAATA-TGA
7277400 AAATAAAT
1 AAATAAAT
7277408 TAAAAGTTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 6 0.20
28 14 0.47
29 10 0.33
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATAAATAATTTTATTTTAAAATATGA
Found at i:7278442 original size:21 final size:21
Alignment explanation
Indices: 7278418--7278457 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7278408 TATTAATTTT
*
7278418 TTTTA-AATATATTTAATAATA
1 TTTTAGAAT-TATTGAATAATA
7278439 TTTTAGAATTATTGAATAA
1 TTTTAGAATTATTGAATAA
7278458 ATATATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
TTTTAGAATTATTGAATAATA
Found at i:7279716 original size:21 final size:21
Alignment explanation
Indices: 7279692--7279731 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7279682 TTAATGATGA
7279692 TTAAATTAAACTAATTAAGGG
1 TTAAATTAAACTAATTAAGGG
* **
7279713 TTAACTTAAGTTAATTAAG
1 TTAAATTAAACTAATTAAG
7279732 ATTAATTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (21 bp):
TTAAATTAAACTAATTAAGGG
Found at i:7281883 original size:24 final size:24
Alignment explanation
Indices: 7281856--7281906 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
7281846 ATATGGTGGC
7281856 TATGAATTTTCATAAGTAGTTGCG
1 TATGAATTTTCATAAGTAGTTGCG
*
7281880 TATGAATTTTCATAGGTAGTTGCG
1 TATGAATTTTCATAAGTAGTTGCG
7281904 TAT
1 TAT
7281907 ATAAAGACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (24 bp):
TATGAATTTTCATAAGTAGTTGCG
Found at i:7282092 original size:17 final size:18
Alignment explanation
Indices: 7282065--7282110 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
7282055 GTATTAATTT
7282065 TATAT-TATTATAAT-TG
1 TATATATATTATAATGTG
* *
7282081 TGTATATATTAT-GTGTG
1 TATATATATTATAATGTG
7282098 TATATATATTATA
1 TATATATATTATA
7282111 TGCATTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (18 bp):
TATATATATTATAATGTG
Found at i:7285344 original size:14 final size:13
Alignment explanation
Indices: 7285314--7285343 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7285304 ATGCAAACAC
7285314 AAAACAAACCAAA
1 AAAACAAACCAAA
*
7285327 AAAATAAACCAAA
1 AAAACAAACCAAA
7285340 AAAA
1 AAAA
7285344 AACCATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.17, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAACAAACCAAA
Found at i:7288012 original size:131 final size:129
Alignment explanation
Indices: 7287778--7288432 Score: 491
Period size: 131 Copynumber: 5.0 Consensus size: 129
7287768 AGTTTCACAA
* * ** ** **
7287778 TTATTAAAAATCCTTTAAAATGAAGGTGATATTCGATACTCAGTAATTCGTGGAATCGTGCCCTA
1 TTATTAAAAATCCCTTAAAACGAAGGCAATA-TCGATGTTTGGTAATTCG-GGAATCGTGCCCTA
* * * * * ** * *
7287843 ACGTGTTGGGTTGCAATTCCTCGTTTGCTCAACGTAATCGAAGGTCCCTTTAGAATTTCACCCAC
64 ACGTGCTGGGTTGTAGTTTCTCGTTTGTTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCAC
7287908 G
129 G
*
7287909 ATTATTAAAAATCCCTT-AAACGAAGGCAATATGCGATATTTGGTAATTCGCGGAATCGTGCCCT
1 -TTATTAAAAATCCCTTAAAACGAAGGCAATAT-CGATGTTTGGTAATTCG-GGAATCGTGCCCT
* * * * *
7287973 AACGTGCTGGGTTGTAGTTTCCCGTTTGCTT-AAAATAATCAAATATCCCTTCAAAATTTCACTC
63 AACGTGCTGGGTTGTAGTTTCTCGTTTG-TTCAAAATAATCGAAGATCCCTTTAGAATTTCACTC
*
7288037 ATG
127 ACG
* * * * *
7288040 TCT-TCTAAAAATCCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCT
1 T-TAT-TAAAAATCCCTTAAAACGAAGGCAATA-TCGATGTTTGGTAATTCGGGAATCGTGCCCT
* * * * * *
7288104 ATCGTTCTGGGTTGT-GATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAG-GTATTCACT
63 AACGTGCTGGGTTGTAG-TTTCTCGTTTGTTCAAAATAATCGAAGATCCCTTTAGAAT-TTCACT
**
7288167 CGTG
126 CACG
* ** * *
7288171 TTTATTAAAAA--CCTTCCAAAACAAAAACAATACTCGGTGTTTGATAATTCGGGAATCGTGCCC
1 -TTATTAAAAATCCCTT--AAAACGAAGGCAATA-TCGATGTTTGGTAATTCGGGAATCGTGCCC
* * * * * * *
7288234 TAATGTGTTGGGTTGT-GATTTCTCATTTTTTCAAAACAATCGAAGATTCC-TTCGAAATTTCAC
62 TAACGTGCTGGGTTGTAG-TTTCTCGTTTGTTCAAAATAATCGAAGATCCCTTTAG-AATTTCAC
7288297 TCACG
125 TCACG
* * * * * *
7288302 TTTTCTAAAAAAACCCTTTAAAACGAAGGCGATATTCGATGTTTGGAAATTCGAGGAATAGTACC
1 TTAT-T-AAAAATCCC-TTAAAACGAAGGCAATA-TCGATGTTTGGTAATTCG-GGAATCGTGCC
* * * * * **
7288367 CTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCTCTTCGGAATTTCACT
61 CTAACGTGCTGGGTTGTAGTTTCTCGTTTGTTCAAAATAATCGAAGATCCCTTTAGAATTTCACT
7288432 C
126 C
7288433 GTATTTTCTA
Statistics
Matches: 420, Mismatches: 80, Indels: 44
0.77 0.15 0.08
Matches are distributed among these distances:
129 3 0.01
130 13 0.03
131 261 0.62
132 52 0.12
133 27 0.06
134 60 0.14
135 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (129 bp):
TTATTAAAAATCCCTTAAAACGAAGGCAATATCGATGTTTGGTAATTCGGGAATCGTGCCCTAAC
GTGCTGGGTTGTAGTTTCTCGTTTGTTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCACG
Done.