Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 250 of 320
Found at i:81767377 original size:54 final size:54
Alignment explanation
Indices: 81767285--81767396 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
81767275 AGCATGGTTG
* * *
81767285 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
* * * *
81767339 CCAGAACAGAAATATGTGGCAGAGCCACCAAAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
81767393 CCAG
1 CCAG
81767397 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
Found at i:81768662 original size:22 final size:22
Alignment explanation
Indices: 81768635--81768677 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81768625 ACAGAAGAAG
* *
81768635 AAAAGAATAACAAATGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
*
81768657 AAAAGAAAAATAAAAGGAGAG
1 AAAAGAAAAACAAAAGGAGAG
81768678 GAAGAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.07
Consensus pattern (22 bp):
AAAAGAAAAACAAAAGGAGAGA
Found at i:81775459 original size:40 final size:40
Alignment explanation
Indices: 81775404--81775556 Score: 161
Period size: 40 Copynumber: 3.8 Consensus size: 40
81775394 TTGAATGATA
*
81775404 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
*
81775444 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTACGAGTTACT-AAT
** *
81775485 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * * *
81775523 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGACTAAGTCCCGAAGGCATTTGTACGAGT
81775557 AGCTATATTC
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 1 0.01
40 93 0.93
41 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:81775556 original size:80 final size:79
Alignment explanation
Indices: 81775417--81775582 Score: 185
Period size: 80 Copynumber: 2.1 Consensus size: 79
81775407 GGACTAAGAT
* **
81775417 CCGAAGGCATTTGTACGAGATACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTACGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
81775481 AAATTCGGGTTAAGTC
65 AAATTC-GGTTAAATC
* * * *
81775497 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTACGAGATACTAAT-ACCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
81775560 TATATTCGGTTAAATT
64 TAAATTCGGTTAAATC
81775576 CCGAAGG
1 CCGAAGG
81775583 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 19 0.26
80 54 0.74
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATTCGGTTAAATC
Found at i:81783395 original size:40 final size:39
Alignment explanation
Indices: 81783335--81783491 Score: 208
Period size: 40 Copynumber: 3.9 Consensus size: 39
81783325 TTGAATGATA
81783335 TCCGGACTAAGAT-CGAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-TCCG-AAGGCATTTGTGCGAGATACTAAT
81783375 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
81783415 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
** *
81783454 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGATACTA
81783492 TAACTGGGCT
Statistics
Matches: 109, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 35 0.32
40 72 0.66
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81783471 original size:79 final size:80
Alignment explanation
Indices: 81783351--81783519 Score: 227
Period size: 79 Copynumber: 2.1 Consensus size: 80
81783341 CTAAGATCGA
*
81783351 AAGGCATTTGTGCGAGATACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-AT
1 AAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTATA-
*
81783415 TCCGGGCTAAG-CCCG
65 ACCGGGCTAAGTCCCG
* ** *
81783430 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
1 AAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTATA
* *
81783494 ACTGGGCTATGTCCCG
65 ACCGGGCTAAGTCCCG
81783510 AAGGCATTTG
1 AAGGCATTTG
81783520 AACGAGTAGC
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 63 0.80
80 15 0.19
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
AAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTATAA
CCGGGCTAAGTCCCG
Found at i:81783526 original size:40 final size:40
Alignment explanation
Indices: 81783351--81783519 Score: 227
Period size: 40 Copynumber: 4.2 Consensus size: 40
81783341 CTAAGATCGA
* * *
81783351 AAGGCATTTGTGCGAGATACTAATTCCGGACTAAGAT-CCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAG-TCCCG
* *
81783391 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCG
*
81783430 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCG
* *
81783470 AAGGCATTTGTGCGAGTTACTATAA-CTGGGCTATGTCCCG
1 AAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCG
81783510 AAGGCATTTG
1 AAGGCATTTG
81783520 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
39 35 0.29
40 82 0.69
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCG
Found at i:81783541 original size:79 final size:79
Alignment explanation
Indices: 81783351--81783552 Score: 196
Period size: 79 Copynumber: 2.6 Consensus size: 79
81783341 CTAAGATCGA
** * * **
81783351 AAGGCATTTGTGCGAGATACTAATTCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACTAAT
*
81783415 TCCGGGCTAAGCCCG
65 ACCGGGCTAAGCCCG
** * *
81783430 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAAT-
* *
81783494 ACTGGGCTATGTCCCG
65 ACCGGGCTAAG-CCCG
* * *
81783510 AAGGCATTTGAACGAG-TAGCTATATTC-GGTTAAATTCCGAAGG
1 AAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
81783553 TACGTGATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 77 0.74
80 24 0.23
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATA
CCGGGCTAAGCCCG
Found at i:81786241 original size:27 final size:26
Alignment explanation
Indices: 81786201--81786312 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
81786191 AGCATGGTTG
* * *
81786201 CCAGAACAGTTAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
81786227 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
81786255 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
81786282 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
81786309 CCAG
1 CCAG
81786313 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:81788198 original size:42 final size:42
Alignment explanation
Indices: 81788139--81788223 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
81788129 GTTACATAAT
*
81788139 TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAGTTAA
1 TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAATTAA
*
81788181 TAGCCGAGGCTATAATTGTATCGCACACTTAGTGCTAATTAA
1 TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAATTAA
81788223 T
1 T
81788224 TAAATCGAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (42 bp):
TAGCCGAGGCTATAATTGTATCGCACACGTAGTGCTAATTAA
Found at i:81794517 original size:62 final size:62
Alignment explanation
Indices: 81794420--81794540 Score: 242
Period size: 62 Copynumber: 2.0 Consensus size: 62
81794410 AATATTAGCT
81794420 ACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCACC
1 ACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCACC
81794482 ACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCC
1 ACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCC
81794541 TAAACAATGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.25
Consensus pattern (62 bp):
ACCATCCATGGCATTATACAAAATGACTAAAGAGCTATGACAAGCCACTCATTTTTCCCACC
Found at i:81795267 original size:49 final size:48
Alignment explanation
Indices: 81795110--81795281 Score: 166
Period size: 49 Copynumber: 3.5 Consensus size: 48
81795100 ATAAAATGCT
* * *
81795110 GATGCCATGTCCCAGACATGATCTTACACTGGCTAGCA-CATCAAAGTC
1 GATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCATCGAAGTC
* ** * *
81795158 GATGCCATGTCCCAGACAGGTCTTACGCTAACTTTCATACATCGAAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCAT-CATCGAAGTC
* * * * **
81795207 GATGTCGTGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATC-ATCGAAGTC
* *
81795256 GATGCCATGTCCCAAACAGTTCTTAC
1 GATGCCATGTCCCAGACAGGTCTTAC
81795282 TCTGACACTC
Statistics
Matches: 98, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
47 13 0.13
48 19 0.19
49 66 0.67
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCATCGAAGTC
Found at i:81807722 original size:15 final size:13
Alignment explanation
Indices: 81807693--81807719 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81807683 GCTCGACAGG
81807693 GACATGCCCGTGT
1 GACATGCCCGTGT
81807706 GACATGCCCGTGT
1 GACATGCCCGTGT
81807719 G
1 G
81807720 TGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:81819749 original size:49 final size:49
Alignment explanation
Indices: 81819682--81819809 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 49
81819672 ACATCAAAGT
*
81819682 CGATGCCATGTCCTAGACAGGTCTTACACTAACTTTCATAAATCGA-AGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATAAATCGATA-C
* * ** *
81819731 CGATGCCATATACC-AGACAGGTCTTACACTAGCTCTCATCTATCGATAT
1 CGATGCCATGT-CCTAGACAGGTCTTACACTAACTCTCATAAATCGATAC
81819780 CGATGCCATGTCCTAGACAGGTCTTACACT
1 CGATGCCATGTCCTAGACAGGTCTTACACT
81819810 GACATTCAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
48 2 0.03
49 64 0.93
50 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATAAATCGATAC
Found at i:81819792 original size:98 final size:90
Alignment explanation
Indices: 81819633--81819857 Score: 245
Period size: 98 Copynumber: 2.4 Consensus size: 90
81819623 GGATAAAATA
* *
81819633 CCGACGCCATATCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCTAG
1 CCGATGCCATAT-CCAGACA-GGTCTTACACTAGCTAGCACATCAAAGTCGATGCCATGTCCTAG
*
81819698 ACAGGTCTTACACTAACTTTCATAAATCGAAG
64 ACAGGTCTTACACTAACATTC---AA--GAAG
** *
81819730 CCGATGCCATATACCAGACAGGTCTTACACTAGCTCTCATCTATCGATA-TCGATGCCATGTCCT
1 CCGATGCCATAT-CCAGACAGGTCTTACACTAGCTAGCA-C-ATC-AAAGTCGATGCCATGTCCT
*
81819794 AGACAGGTCTTACACTGACATTCAAGAAG
62 AGACAGGTCTTACACTAACATTCAAGAAG
* * *
81819823 CTGATGCCATGTCCAAGACAAGTCTTACACTAGCT
1 CCGATGCCATATCC-AGACAGGTCTTACACTAGCT
81819858 TGTATATCTC
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
92 2 0.02
93 33 0.29
95 2 0.02
96 16 0.14
97 19 0.17
98 39 0.35
99 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (90 bp):
CCGATGCCATATCCAGACAGGTCTTACACTAGCTAGCACATCAAAGTCGATGCCATGTCCTAGAC
AGGTCTTACACTAACATTCAAGAAG
Found at i:81819856 original size:93 final size:95
Alignment explanation
Indices: 81819681--81819857 Score: 252
Period size: 98 Copynumber: 1.9 Consensus size: 95
81819671 CACATCAAAG
*
81819681 TCGATGCCATGTCCTAGACAGGTCTTACACTAACTTTCATAAATCGAAGCCGATGCCATATACCA
1 TCGATGCCATGTCCTAGACAGGTCTTACACTAACATTC--AAA-CGAAGCCGATGCCATATACCA
*
81819746 GACAGGTCTTACACTAGCTCTCATCTATCGATA
63 GACAAGTCTTACACTAGCTCTCATCTATCGATA
* * *
81819779 TCGATGCCATGTCCTAGACAGGTCTTACACTGACATTC-AA-GAAGCTGATGCCATGT-CCAAGA
1 TCGATGCCATGTCCTAGACAGGTCTTACACTAACATTCAAACGAAGCCGATGCCATATACC-AGA
81819841 CAAGTCTTACACTAGCT
65 CAAGTCTTACACTAGCT
81819858 TGTATATCTC
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
92 2 0.03
93 33 0.45
95 2 0.03
98 36 0.49
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (95 bp):
TCGATGCCATGTCCTAGACAGGTCTTACACTAACATTCAAACGAAGCCGATGCCATATACCAGAC
AAGTCTTACACTAGCTCTCATCTATCGATA
Found at i:81819934 original size:46 final size:45
Alignment explanation
Indices: 81819871--81819996 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 45
81819861 ATATCTCAAG
*
81819871 GCTGATGCATGTCCCAAACTTGTCTTACACTAGCTCTCGTCTCAATGT
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCG--T-AATGT
* *
81819919 -C-GATGCATGTTCCAAACATGTCTTACACTGGCTCTCGTAATGT
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATGT
*
81819962 GGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAAACATGTCTTACACTAGC
81819997 ACACATATCA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 5 0.07
44 1 0.01
45 1 0.01
46 61 0.88
47 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (45 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATGT
Found at i:81832012 original size:27 final size:26
Alignment explanation
Indices: 81831975--81832086 Score: 89
Period size: 27 Copynumber: 4.2 Consensus size: 26
81831965 AGCATGGCTG
*
81831975 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGACAAAGCCA
* * *
81832001 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAAAGCCA
* *
81832029 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCA
* * * * *
81832056 CTATATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAAAGCCA
81832083 CCAG
1 CCAG
81832087 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.70
28 15 0.21
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAAAGCCA
Found at i:81832066 original size:54 final size:54
Alignment explanation
Indices: 81831975--81832086 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
81831965 AGCATGGCTG
*
81831975 CCAGAACAGATAATGTGACAAAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCATGGCAGAGCCA
* * * * ** *
81832029 CCAGAACAGATATATGTGGCAGAGCCACTATAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCATGGCAGAGCCA
81832083 CCAG
1 CCAG
81832087 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 34 0.69
55 15 0.31
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCATGGCAGAGCCA
Found at i:81838624 original size:27 final size:27
Alignment explanation
Indices: 81838589--81838650 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
81838579 ACAATGTGAT
*
81838589 AGAGTCACCAGATAAGATAATCGTGGC
1 AGAGCCACCAGATAAGATAATCGTGGC
* *
81838616 AGAGCCACCAGATCAGATAATTGTGGC
1 AGAGCCACCAGATAAGATAATCGTGGC
*
81838643 ATAGCCAC
1 AGAGCCAC
81838651 TAGGACGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
AGAGCCACCAGATAAGATAATCGTGGC
Found at i:81846485 original size:23 final size:23
Alignment explanation
Indices: 81846459--81846567 Score: 173
Period size: 23 Copynumber: 4.7 Consensus size: 23
81846449 ATACACGGAT
* *
81846459 TCCAACCAAACACACCAAAATAA
1 TCCACCCAAACACACCAGAATAA
*
81846482 TCCAACCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
*
81846505 GCCACCCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
81846528 TCCACCCAAACACACCAGAATAA
1 TCCACCCAAACACACCAGAATAA
*
81846551 ACCACCCAAACACACCA
1 TCCACCCAAACACACCA
81846568 AAACGGCACT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 81 1.00
ACGTcount: A:0.50, C:0.39, G:0.04, T:0.06
Consensus pattern (23 bp):
TCCACCCAAACACACCAGAATAA
Found at i:81846863 original size:20 final size:20
Alignment explanation
Indices: 81846838--81846882 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
81846828 CAGTAAAATG
81846838 TTTTCTTGAAAATGATTTAC
1 TTTTCTTGAAAATGATTTAC
*
81846858 TTTTC-TGGAAATGATTTAC
1 TTTTCTTGAAAATGATTTAC
81846877 TTTTCT
1 TTTTCT
81846883 AGTGTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (20 bp):
TTTTCTTGAAAATGATTTAC
Found at i:81846986 original size:18 final size:18
Alignment explanation
Indices: 81846960--81847002 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
81846950 AAAAGCTGTC
*
81846960 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
81846978 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
81846996 TTTATAT
1 TTTATAT
81847003 TTTAAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:81847301 original size:29 final size:29
Alignment explanation
Indices: 81847268--81847325 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
81847258 TAACAACAAT
81847268 ATTGTCCAAGCGCATAACTAATATTACAC
1 ATTGTCCAAGCGCATAACTAATATTACAC
*
81847297 ATTGTCCAAGTGCATAACTAATATTACAC
1 ATTGTCCAAGCGCATAACTAATATTACAC
81847326 CACATTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (29 bp):
ATTGTCCAAGCGCATAACTAATATTACAC
Found at i:81848316 original size:32 final size:32
Alignment explanation
Indices: 81848275--81848367 Score: 159
Period size: 32 Copynumber: 2.9 Consensus size: 32
81848265 TTTCAATCAT
*
81848275 TTCAATATCCAACAAGTTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
81848307 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
81848339 TTCAACATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
81848368 CAATATCTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:81852674 original size:3 final size:3
Alignment explanation
Indices: 81852666--81852702 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
81852656 TAAAGCATAA
81852666 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
81852703 TTCTTCAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:81852739 original size:17 final size:17
Alignment explanation
Indices: 81852717--81852753 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
81852707 TCAACAGACT
81852717 GATGCAAAATCCAAACA
1 GATGCAAAATCCAAACA
*
81852734 GATGCAAAATCCAAATA
1 GATGCAAAATCCAAACA
81852751 GAT
1 GAT
81852754 TCTTCAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (17 bp):
GATGCAAAATCCAAACA
Found at i:81857625 original size:26 final size:24
Alignment explanation
Indices: 81857595--81857654 Score: 61
Period size: 26 Copynumber: 2.5 Consensus size: 24
81857585 AGATATACAT
81857595 ATAATACTAATAAAATATGATATTTA
1 ATAATACTAATAAAATA-G-TATTTA
* **
81857621 ATAATAATTTTAAAATAGTATTTA
1 ATAATACTAATAAAATAGTATTTA
81857645 AT-ATAC-AATA
1 ATAATACTAATA
81857655 TATAATATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 2 0.07
23 3 0.11
24 8 0.29
25 1 0.04
26 14 0.50
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (24 bp):
ATAATACTAATAAAATAGTATTTA
Found at i:81857632 original size:12 final size:13
Alignment explanation
Indices: 81857614--81857668 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
81857604 ATAAAATATG
81857614 ATATTTAATAATA
1 ATATTTAATAATA
81857627 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
81857638 GTATTTAATATACA
1 ATATTTAATA-ATA
*
81857652 ATATATAATATATA
1 ATATTTAATA-ATA
81857666 ATA
1 ATA
81857669 ACAAAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:81857715 original size:17 final size:17
Alignment explanation
Indices: 81857658--81857718 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
81857648 TACAATATAT
*
81857658 AATATATAATAACA-AAA
1 AATATAT-ATAAAATAAA
*
81857675 AAT-TATAAAAGAATAATA
1 AATATATATAA-AATAA-A
*
81857693 ATTATATATAAAATAAA
1 AATATATATAAAATAAA
81857710 AATATATAT
1 AATATATAT
81857719 TGGTTTAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.09
16 4 0.11
17 14 0.40
18 8 0.23
19 6 0.17
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AATATATATAAAATAAA
Found at i:81857992 original size:19 final size:19
Alignment explanation
Indices: 81857966--81858026 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 19
81857956 AATGATAATA
81857966 ATAT-ATAGATAAAAAAAT
1 ATATAATAGATAAAAAAAT
*
81857984 ATATAATAG-TATAAAAAT
1 ATATAATAGATAAAAAAAT
*
81858002 AATATAAT--ATAAAATAAT
1 -ATATAATAGATAAAAAAAT
81858020 -TATAATA
1 ATATAATA
81858027 TAATATGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
16 6 0.17
18 19 0.53
19 11 0.31
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
ATATAATAGATAAAAAAAT
Found at i:81858014 original size:16 final size:16
Alignment explanation
Indices: 81857955--81858205 Score: 66
Period size: 16 Copynumber: 15.4 Consensus size: 16
81857945 TTAAAACCTT
*
81857955 TAATGATAATAAT-ATA
1 TAAT-ATAAAAATAATA
*
81857971 TAGATAAAAAAATATATAA
1 TA-ATATAAAAATA-AT-A
*
81857990 TAGTATAAAAATAATA
1 TAATATAAAAATAATA
81858006 TAATAT-AAAATAATTA
1 TAATATAAAAATAA-TA
*
81858022 TAATATAATATGAA-AGTA
1 TAATATAA-A--AATAATA
*
81858040 TATATGTAAAAATAATA
1 TA-ATATAAAAATAATA
* *
81858057 T-ATAATATATATAAT-
1 TAAT-ATAAAAATAATA
* *
81858072 T-A-ATAAATATATTA
1 TAATATAAAAATAATA
81858086 TACA-AGTAAAAAT-ATAA
1 TA-ATA-TAAAAATAAT-A
*
81858103 TAATATATAAAT-A-A
1 TAATATAAAAATAATA
*
81858117 TAATGT-AAAATAATAA
1 TAATATAAAAATAAT-A
* * *
81858133 TATTTCCTGAAAAGTAATA
1 TA-AT-AT-AAAAATAATA
*
81858152 T-ATA-ATAAATAATAA
1 TAATATAAAAATAAT-A
81858167 TAATATAAATAAT-ATA
1 TAATATAAA-AATAATA
*
81858183 TAATA-AAATAATTATA
1 TAATATAAA-AATAATA
81858199 TAATATA
1 TAATATA
81858206 TAATCTGAAA
Statistics
Matches: 178, Mismatches: 26, Indels: 61
0.67 0.10 0.23
Matches are distributed among these distances:
13 13 0.07
14 15 0.08
15 20 0.11
16 63 0.35
17 26 0.15
18 21 0.12
19 11 0.06
20 9 0.05
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (16 bp):
TAATATAAAAATAATA
Found at i:81858018 original size:21 final size:21
Alignment explanation
Indices: 81857963--81858032 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
81857953 TTTAATGATA
*
81857963 ATAATATATAGATAAAAA-AAT
1 ATAATATA-AAATAAAAATAAT
**
81857984 AT-ATAATAGTATAAAAATAAT
1 ATAAT-ATAAAATAAAAATAAT
**
81858005 ATAATATAAAATAATTATAAT
1 ATAATATAAAATAAAAATAAT
81858026 ATAATAT
1 ATAATAT
81858033 GAAAGTATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 9 0.22
21 29 0.73
22 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (21 bp):
ATAATATAAAATAAAAATAAT
Found at i:81858104 original size:5 final size:5
Alignment explanation
Indices: 81858000--81858087 Score: 53
Period size: 5 Copynumber: 17.6 Consensus size: 5
81857990 TAGTATAAAA
* *
81858000 ATAAT ATAAT ATAAA ATAATT ATAAT ATAAT ATGAAAGT ATATAT GTAA-
1 ATAAT ATAAT ATAAT ATAA-T ATAAT ATAAT AT--AA-T ATA-AT ATAAT
*
81858049 A-AAT A-ATAT ATAAT AT-AT ATAAT -TAAT A-AAT ATATT ATA
1 ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
81858088 CAAGTAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 22
0.71 0.05 0.23
Matches are distributed among these distances:
3 2 0.03
4 14 0.21
5 36 0.54
6 9 0.13
7 3 0.04
8 3 0.04
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:81858133 original size:108 final size:113
Alignment explanation
Indices: 81857979--81858179 Score: 247
Period size: 108 Copynumber: 1.8 Consensus size: 113
81857969 TATAGATAAA
*
81857979 AAAATATATAATAGTATAAAAATAATATAATATAAAATAATTATAATATAAT-ATG-AAAGTATA
1 AAAATATATAATAATATAAAAATAATATAATATAAAATAA-TATAATAT-ATCATGAAAAGTA-A
* *
81858042 TATGTAA-AAATAATATATAATATATATAATTAATAAATATATTATACAAGT
63 TATATAATAAATAATA-ATAATATAAATAATTAATAAATATATTATACAAGT
* * * *
81858093 AAAA-ATATAATAATATATAAAT-A-ATAATGTAAAAT-A-ATAATATTTCCTGAAAAGTAATAT
1 AAAATATATAATAATATAAAAATAATATAATATAAAATAATATAATATATCATGAAAAGTAATAT
81858153 ATAATAAATAATAATAATATAAATAAT
66 ATAATAAATAATAATAATATAAATAAT
81858180 ATATAATAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
107 1 0.01
108 29 0.38
109 14 0.18
110 1 0.01
111 11 0.14
112 1 0.01
113 16 0.21
114 4 0.05
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (113 bp):
AAAATATATAATAATATAAAAATAATATAATATAAAATAATATAATATATCATGAAAAGTAATAT
ATAATAAATAATAATAATATAAATAATTAATAAATATATTATACAAGT
Found at i:81858135 original size:35 final size:36
Alignment explanation
Indices: 81857965--81858131 Score: 107
Period size: 36 Copynumber: 4.5 Consensus size: 36
81857955 TAATGATAAT
* * *
81857965 AATATATAGATAAAAAAATATATAATAGTATAAAAAT-
1 AATATAT-G-TAAAATAATATATAATAATATATAAATA
*
81858002 AATATAATATAAAATAAT-TATAAT-ATAATATGAAAGT-
1 AATAT-ATGTAAAATAATATATAATAAT-ATAT-AAA-TA
*
81858039 -ATATATGTAAAAATAATATATAATATATATAATTAATA
1 AATATATGT-AAAATAATATATAATA-ATAT-ATAAATA
*
81858077 AATATAT-TATACAAGTAAAAATATAATAATATATAAAT-
1 AATATATGTA-A-AA-T-AATATATAATAATATATAAATA
81858115 AATA-ATGTAAAATAATA
1 AATATATGTAAAATAATA
81858132 ATATTTCCTG
Statistics
Matches: 105, Mismatches: 9, Indels: 35
0.70 0.06 0.23
Matches are distributed among these distances:
34 4 0.04
35 13 0.12
36 25 0.24
37 17 0.16
38 14 0.13
39 17 0.16
40 5 0.05
41 10 0.10
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (36 bp):
AATATATGTAAAATAATATATAATAATATATAAATA
Found at i:81858165 original size:3 final size:3
Alignment explanation
Indices: 81858147--81858209 Score: 51
Period size: 3 Copynumber: 20.3 Consensus size: 3
81858137 TCCTGAAAAG
81858147 TAA TATA TAA TAAA TAA TAA TAA T-A TAAA TAA TATA TAA TAA -AA TAA
1 TAA TA-A TAA T-AA TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA
*
81858194 TTA T-A TAA TATA TAA T
1 TAA TAA TAA TA-A TAA T
81858210 CTGAAAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 16
0.75 0.01 0.24
Matches are distributed among these distances:
2 6 0.12
3 31 0.61
4 14 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:81858185 original size:26 final size:26
Alignment explanation
Indices: 81857962--81858284 Score: 88
Period size: 26 Copynumber: 11.9 Consensus size: 26
81857952 CTTTAATGAT
*
81857962 AATAATATATAGATA-AAAAAATATAT-
1 AATAATA-ATA-ATATAAATAATATATA
81857988 AATAGTATAA-AA-ATAATATAATATA-A
1 AATA--ATAATAATATAA-ATAATATATA
*
81858014 AATAATTATAATATAATATGAAAGTATATA
1 AATAATAATAATATAA-AT--AA-TATATA
** *
81858044 TGTAAAAATAATATATAAT-ATATATA
1 AATAATAATAATATA-AATAATATATA
*
81858070 ATTAATAAATATATTATACAAGTAA-A-A-A
1 AATAAT-AATA-A-TATA-AA-TAATATATA
* *
81858098 TATAATAAT-ATATAAATAATAATGTAA
1 AATAATAATAATATAAATAAT-ATAT-A
* *
81858125 AATAATAATATTTCCTGAAAAGTAATATATAATA
1 AATAATAATA-AT-AT--AAA-T-A-ATAT-ATA
81858159 AATAATAATAATATAAATAATATAT-
1 AATAATAATAATATAAATAATATATA
*
81858184 AATAA-AATAAT-TATATAATATATA
1 AATAATAATAATATAAATAATATATA
* * *
81858208 ATCTGAA-AATAAGGT-TAAA-AATAAAAA
1 A-AT-AATAATAA--TATAAATAATATATA
*
81858235 AATAATAATAATAATAAAT-TTATATA
1 AATAATAATAAT-ATAAATAATATATA
* *
81858261 TATAATAATAGAAATAAAT-ATATA
1 AATAATAATA-ATATAAATAATATA
81858285 GGGTTAGATT
Statistics
Matches: 225, Mismatches: 31, Indels: 82
0.67 0.09 0.24
Matches are distributed among these distances:
22 3 0.01
23 13 0.06
24 17 0.08
25 14 0.06
26 74 0.33
27 30 0.13
28 16 0.07
29 13 0.06
30 20 0.09
31 2 0.01
32 4 0.02
33 2 0.01
34 14 0.06
35 3 0.01
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (26 bp):
AATAATAATAATATAAATAATATATA
Found at i:81858187 original size:29 final size:32
Alignment explanation
Indices: 81858147--81858205 Score: 97
Period size: 29 Copynumber: 1.9 Consensus size: 32
81858137 TCCTGAAAAG
81858147 TAATATATAAT-AAATAA-TA-ATAATATAAA
1 TAATATATAATAAAATAATTATATAATATAAA
81858176 TAATATATAATAAAATAATTATATAATATA
1 TAATATATAATAAAATAATTATATAATATA
81858206 TAATCTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 6 0.22
31 2 0.07
32 8 0.30
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (32 bp):
TAATATATAATAAAATAATTATATAATATAAA
Found at i:81858208 original size:15 final size:15
Alignment explanation
Indices: 81858150--81858209 Score: 70
Period size: 15 Copynumber: 4.0 Consensus size: 15
81858140 TGAAAAGTAA
81858150 TATATAATAAATAAT
1 TATATAATAAATAAT
*
81858165 AATA-ATATAAATAA-
1 TATATA-ATAAATAAT
81858179 TATATAATAAAATAAT
1 TATATAAT-AAATAAT
*
81858195 TATATAATATATAAT
1 TATATAATAAATAAT
81858210 CTGAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 6 0.16
15 24 0.63
16 8 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TATATAATAAATAAT
Found at i:81858281 original size:20 final size:19
Alignment explanation
Indices: 81857974--81858284 Score: 78
Period size: 20 Copynumber: 15.8 Consensus size: 19
81857964 TAATATATAG
81857974 ATAAAA-AAATATATAATA
1 ATAAAATAAATATATAATA
* *
81857992 GTATAA-AAATAATATAAT-
1 ATAAAATAAAT-ATATAATA
81858010 ATAAAAT-AAT-TATAAT-
1 ATAAAATAAATATATAATA
*
81858026 ATAATATGAAAGTATAT-AT-
1 ATAAAAT-AAA-TATATAATA
*
81858045 GTAAAA-ATAATATATAATA
1 ATAAAATA-AATATATAATA
* * * *
81858064 TATATAATTAATAAATATATT
1 -ATAAAATAAATATATA-ATA
* *
81858085 ATACAAGTAAAAATATAATA
1 ATA-AAATAAATATATAATA
*
81858105 AT-ATATAAATA-ATAATGTA
1 ATAAAATAAATATATAA--TA
* *
81858124 A-AATAATAATATTTCCTGAA-A
1 ATAA-AATAA-ATAT-AT-AATA
* *
81858145 AGTAATATATAATAAATAATA
1 A-TAAAATA-AATATATAATA
*
81858166 ATAATATAAATA-ATATATA
1 ATAAAATAAATATATA-ATA
*
81858185 ATAAAATAATTATATAATA
1 ATAAAATAAATATATAATA
** *
81858204 TATAATCTGAAA-ATAAGGTTAAAA
1 -ATAAAAT-AAATAT-A---TAATA
81858228 ATAAAA-AAATAATAATAATA
1 ATAAAATAAAT-AT-ATAATA
* *
81858248 ATAAATTTATATATATAATA
1 ATAAA-ATAAATATATAATA
81858268 ATAGAAATAAATATATA
1 ATA-AAATAAATATATA
81858285 GGGTTAGATT
Statistics
Matches: 214, Mismatches: 41, Indels: 74
0.65 0.12 0.22
Matches are distributed among these distances:
16 12 0.06
17 10 0.05
18 30 0.14
19 38 0.18
20 71 0.33
21 27 0.13
22 8 0.04
23 12 0.06
24 6 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (19 bp):
ATAAAATAAATATATAATA
Found at i:81874220 original size:12 final size:13
Alignment explanation
Indices: 81874202--81874256 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
81874192 ATAAAATATG
81874202 ATATTTAATAATA
1 ATATTTAATAATA
81874215 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
81874226 GTATTTAATATACA
1 ATATTTAATA-ATA
*
81874240 ATATATAATATATA
1 ATATTTAATA-ATA
81874254 ATA
1 ATA
81874257 ACAAAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:81874303 original size:17 final size:17
Alignment explanation
Indices: 81874246--81874306 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
81874236 TACAATATAT
*
81874246 AATATATAATAACA-AAA
1 AATATAT-ATAAAATAAA
*
81874263 AAT-TATAAAAGAATAATA
1 AATATATATAA-AATAA-A
*
81874281 ATTATATATAAAATAAA
1 AATATATATAAAATAAA
81874298 AATATATAT
1 AATATATAT
81874307 TGGTTTAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.09
16 4 0.11
17 14 0.40
18 8 0.23
19 6 0.17
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AATATATATAAAATAAA
Found at i:81874417 original size:21 final size:23
Alignment explanation
Indices: 81874359--81874417 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
81874349 AATTTATATT
*
81874359 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
81874380 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
81874403 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
81874418 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:81874600 original size:16 final size:16
Alignment explanation
Indices: 81874555--81874615 Score: 63
Period size: 16 Copynumber: 3.7 Consensus size: 16
81874545 TGATAATATT
81874555 ATATAGATA-AAAAATA
1 ATATA-ATATAAAAATA
*
81874571 TATAATAGTATAAAAATA
1 -AT-ATAATATAAAAATA
81874589 ATATAATAT-AAAATA
1 ATATAATATAAAAATA
81874604 ATTATAATATAA
1 A-TATAATATAA
81874616 TATGAAAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 7 0.18
16 14 0.37
17 7 0.18
18 10 0.26
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATATAATATAAAAATA
Found at i:81874673 original size:20 final size:21
Alignment explanation
Indices: 81874636--81874699 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 21
81874626 TATATGTAAA
* *
81874636 AATAATATATAATATATATAATT
1 AATAA-ATAT-ATATATACAAGT
81874659 AATAAATATAT-TATACAAGT
1 AATAAATATATATATACAAGT
81874679 AA-AAATATA-ATA-ACAA-T
1 AATAAATATATATATACAAGT
81874696 AATA
1 AATA
81874700 TATAAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 3 0.08
18 5 0.14
19 9 0.24
20 9 0.24
21 2 0.05
22 4 0.11
23 5 0.14
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (21 bp):
AATAAATATATATATACAAGT
Found at i:81874699 original size:14 final size:14
Alignment explanation
Indices: 81874567--81874727 Score: 60
Period size: 13 Copynumber: 11.8 Consensus size: 14
81874557 ATAGATAAAA
81874567 AATATATAATAGT-AT
1 AATA-ATAATA-TAAT
*
81874582 AAAAATAATATAAT
1 AATAATAATATAAT
*
81874596 -ATAA-AATAATTAT
1 AATAATAAT-ATAAT
81874609 AAT-ATAATATGAA-
1 AATAATAATAT-AAT
* * *
81874622 AGT-ATATATGTAAA
1 AATAATA-ATATAAT
81874636 AATAAT-ATATAAT
1 AATAATAATATAAT
81874649 -ATATATAAT-TAAT
1 AATA-ATAATATAAT
*
81874662 AA-ATATATTATACA-
1 AATA-ATAATATA-AT
* *
81874676 AGTAAAAATATAAT
1 AATAATAATATAAT
*
81874690 AACAATAATAT-AT
1 AATAATAATATAAT
*
81874703 AAATAATAATGTAA-
1 -AATAATAATATAAT
81874717 AATAATAATAT
1 AATAATAATAT
81874728 TTCGTGAAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 36
0.67 0.12 0.22
Matches are distributed among these distances:
12 6 0.05
13 48 0.44
14 48 0.44
15 8 0.07
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (14 bp):
AATAATAATATAAT
Found at i:81874719 original size:13 final size:14
Alignment explanation
Indices: 81874566--81874727 Score: 80
Period size: 14 Copynumber: 11.9 Consensus size: 14
81874556 TATAGATAAA
81874566 AAATATATAATAGTAT
1 AAATA-ATAATA-TAT
81874582 AAA-AATAATATAAT
1 AAATAATAATAT-AT
81874596 ATAA-AATAAT-TAT
1 A-AATAATAATATAT
81874609 -AAT-ATAATATGA-
1 AAATAATAATAT-AT
* *
81874621 AAGT-AT-ATATGT
1 AAATAATAATATAT
81874633 AAA-AATAATATAT
1 AAATAATAATATAT
81874646 AATATATATAAT-TAAT
1 AA-ATA-ATAATAT-AT
* *
81874662 AAAT-ATATTATAC
1 AAATAATAATATAT
* *
81874675 AAGTAAAAATATA-
1 AAATAATAATATAT
*
81874688 ATAACAATAATATAT
1 A-AATAATAATATAT
*
81874703 AAATAATAATGTA-
1 AAATAATAATATAT
81874716 AAATAATAATAT
1 AAATAATAATAT
81874728 TTCGTGAAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 37
0.69 0.09 0.22
Matches are distributed among these distances:
11 7 0.06
12 9 0.08
13 35 0.31
14 37 0.32
15 14 0.12
16 12 0.11
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (14 bp):
AAATAATAATATAT
Found at i:81874793 original size:16 final size:16
Alignment explanation
Indices: 81874760--81874802 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
81874750 AAATATAAAC
81874760 AATATAAATAATACAT
1 AATATAAATAATACAT
*
81874776 AATA-AAATAATTATAT
1 AATATAAATAA-TACAT
81874792 AATATATAATA
1 AATATA-AATA
81874803 TAAAAATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 6 0.26
16 12 0.52
17 1 0.04
18 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAATAATACAT
Found at i:81876356 original size:4 final size:4
Alignment explanation
Indices: 81876349--81876377 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
81876339 ATAAACAAAC
81876349 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
81876378 AGGCCCGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:81878975 original size:6 final size:6
Alignment explanation
Indices: 81878964--81879027 Score: 53
Period size: 6 Copynumber: 11.0 Consensus size: 6
81878954 CATAAAAGAT
* * * *
81878964 AAATAA AAATAA AAAT-A AAATAA AAATAG GAATAG AAAT-A AGAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
81879009 AAATAA AAAGACA AAATAA
1 AAATAA AAATA-A AAATAA
81879028 TAAAAGAGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
5 12 0.26
6 30 0.64
7 5 0.11
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:81878977 original size:17 final size:17
Alignment explanation
Indices: 81878937--81878991 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 17
81878927 TACAAGTCTT
81878937 TAAAAGAT-AATAAGAAACA
1 TAAAAGATAAAT-A-AAA-A
81878956 TAAAAGATAAATAAAAA
1 TAAAAGATAAATAAAAA
81878973 TAAAA-ATAAAATAAAAA
1 TAAAAGAT-AAATAAAAA
81878990 TA
1 TA
81878992 GGAATAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.06
17 17 0.50
18 3 0.09
19 9 0.26
20 3 0.09
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
TAAAAGATAAATAAAAA
Found at i:81878981 original size:23 final size:23
Alignment explanation
Indices: 81878955--81879027 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
81878945 AATAAGAAAC
81878955 ATAAAAGATAAATAAAAATAAAA
1 ATAAAAGATAAATAAAAATAAAA
* * ** *
81878978 ATAAAATAAAAATAGGAATAGAA
1 ATAAAAGATAAATAAAAATAAAA
*
81879001 AT--AAGATAAAATAAAAAGACAAA
1 ATAAAAGAT-AAATAAAAATA-AAA
81879024 ATAA
1 ATAA
81879028 TAAAAGAGAA
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
21 3 0.09
22 8 0.23
23 24 0.69
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.16
Consensus pattern (23 bp):
ATAAAAGATAAATAAAAATAAAA
Found at i:81878997 original size:12 final size:11
Alignment explanation
Indices: 81878964--81879016 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
81878954 CATAAAAGAT
81878964 AAATAAAAATAA
1 AAAT-AAAATAA
81878976 AAATAAAATAA
1 AAATAAAATAA
* *
81878987 AAATAGGAATAG
1 AAATA-AAATAA
*
81878999 AAATAAGAT-A
1 AAATAAAATAA
81879009 AAATAAAA
1 AAATAAAA
81879017 AGACAAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 14 0.41
12 13 0.38
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:81878997 original size:17 final size:18
Alignment explanation
Indices: 81878964--81879004 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
81878954 CATAAAAGAT
81878964 AAATAAAAATAAAAATA-
1 AAATAAAAATAAAAATAG
**
81878981 AAATAAAAATAGGAATAG
1 AAATAAAAATAAAAATAG
81878999 AAATAA
1 AAATAA
81879005 GATAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
AAATAAAAATAAAAATAG
Found at i:81886669 original size:32 final size:29
Alignment explanation
Indices: 81886615--81886685 Score: 72
Period size: 32 Copynumber: 2.3 Consensus size: 29
81886605 ATAATTAAAA
*
81886615 TATAATTTGAGTTAAATAAAAATAATTATTTT
1 TATAATTT-ATTTAAATAAAAAT-A-TATTTT
*
81886647 TATAATTTATTTAAATTTAAAATATATTTT
1 TATAATTTATTTAAA-TAAAAATATATTTT
*
81886677 AAT-ATTTAT
1 TATAATTTAT
81886686 AATGTACTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 6 0.17
30 8 0.23
31 7 0.20
32 14 0.40
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (29 bp):
TATAATTTATTTAAATAAAAATATATTTT
Found at i:81886696 original size:19 final size:17
Alignment explanation
Indices: 81886645--81886688 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
81886635 AATAATTATT
*
81886645 TTTATAATTTATTTAAA
1 TTTATAATATATTTAAA
*
81886662 TTTAAAATATATTTTAATA
1 TTTATAATATA-TTTAA-A
81886681 TTTATAAT
1 TTTATAAT
81886689 GTACTTTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 9 0.41
18 5 0.23
19 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTATAATATATTTAAA
Found at i:81890144 original size:35 final size:36
Alignment explanation
Indices: 81890087--81890154 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
81890077 TAATATGTTT
*
81890087 ATATTATCTTTTTATATATAT-AATATTAATTTCAC
1 ATATTATCTTTTTATATATATAAAAATTAATTTCAC
81890122 ATATTAT-TTTTTAT-TAATTATAAAAATTAATTT
1 ATATTATCTTTTTATAT-A-TATAAAAATTAATTT
81890155 TAACATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 1 0.03
34 8 0.28
35 10 0.34
36 10 0.34
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (36 bp):
ATATTATCTTTTTATATATATAAAAATTAATTTCAC
Found at i:81890765 original size:15 final size:15
Alignment explanation
Indices: 81890745--81890774 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81890735 ATAATTTTTA
81890745 ATTTTTTAAAAATAT
1 ATTTTTTAAAAATAT
*
81890760 ATTTTTTAGAAATAT
1 ATTTTTTAAAAATAT
81890775 TAAAAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATTTTTTAAAAATAT
Found at i:81891799 original size:56 final size:56
Alignment explanation
Indices: 81891737--81891849 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
81891727 CTACTAACTC
81891737 TTTATTTTTTTAATTAAATTAAGTGGAAACAAACACTTTGTTACATGCACCATTTA
1 TTTATTTTTTTAATTAAATTAAGTGGAAACAAACACTTTGTTACATGCACCATTTA
81891793 TTTATTTTTTTAATTAAATTAAGTGGAAACAAACACTTTGTTACATGCACCATTTA
1 TTTATTTTTTTAATTAAATTAAGTGGAAACAAACACTTTGTTACATGCACCATTTA
81891849 T
1 T
81891850 GTATGTATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.43
Consensus pattern (56 bp):
TTTATTTTTTTAATTAAATTAAGTGGAAACAAACACTTTGTTACATGCACCATTTA
Found at i:81904449 original size:33 final size:33
Alignment explanation
Indices: 81904352--81904450 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
81904342 TTTCTTCTTG
*
81904352 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
* *
81904385 ACATTCCAGCTCCTGTACAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
81904418 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
81904451 CTACTCAATC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.32, C:0.40, G:0.10, T:0.17
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Found at i:81908507 original size:42 final size:42
Alignment explanation
Indices: 81908448--81908535 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
81908438 GGCATTTGGA
81908448 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
1 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
81908490 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
1 CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
81908532 CCAT
1 CCAT
81908536 ATGTTTCAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (42 bp):
CCATCAGTGGGTAAACCGTAGTTGAAGGATAGGGGAAATCTT
Found at i:81917452 original size:3 final size:3
Alignment explanation
Indices: 81917444--81917532 Score: 76
Period size: 3 Copynumber: 29.7 Consensus size: 3
81917434 AAAGGAAAAT
* * *
81917444 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA A-A AGGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * *
81917489 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
81917533 GTAGTAAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
2 5 0.07
3 59 0.87
4 2 0.03
5 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:81917469 original size:17 final size:17
Alignment explanation
Indices: 81917449--81917532 Score: 57
Period size: 17 Copynumber: 4.9 Consensus size: 17
81917439 AAAATATAAT
*
81917449 AATAATAGTAATAATAC
1 AATAATAATAATAATAC
* *
81917466 AATAGTAATAATAATAA
1 AATAATAATAATAATAC
81917483 AAGGTAATAATAATATATTA-
1 AA--TAATAATAATA-A-TAC
* * *
81917503 GATAGTAAAAATAAT--
1 AATAATAATAATAATAC
81917518 AATAATAATAATAAT
1 AATAATAATAATAAT
81917533 GTAGTAAAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
15 12 0.23
16 1 0.02
17 17 0.32
18 9 0.17
19 10 0.19
20 2 0.04
21 2 0.04
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (17 bp):
AATAATAATAATAATAC
Found at i:81917469 original size:20 final size:20
Alignment explanation
Indices: 81917441--81917530 Score: 63
Period size: 20 Copynumber: 4.2 Consensus size: 20
81917431 TAAAAAGGAA
* *
81917441 AATATAATAATAATAGTAAT
1 AATACAATAATAATAATAAT
*
81917461 AATACAATAGTAATAATAAT
1 AATACAATAATAATAATAAT
* *
81917481 AAAAGGTAATAATAATATATTAGAT
1 AATA--CAATAATAATA-A-TA-AT
* *
81917506 AGTAAAAATAATAATAATAAT
1 AAT-ACAATAATAATAATAAT
81917527 AATA
1 AATA
81917531 ATGTAGTAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
20 21 0.39
21 4 0.07
22 11 0.20
23 2 0.04
24 12 0.22
25 3 0.06
26 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (20 bp):
AATACAATAATAATAATAAT
Found at i:81917713 original size:22 final size:23
Alignment explanation
Indices: 81917660--81917714 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
81917650 AAAGAGAAAG
* *
81917660 AAATAATAACATGATAATCTAAT
1 AAATAATAATATGACAATCTAAT
*
81917683 -AATAATAATAT-ACAATGTAAT
1 AAATAATAATATGACAATCTAAT
81917704 AAATAATAATA
1 AAATAATAATA
81917715 GAAAAGGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.29
22 20 0.71
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATAATAATATGACAATCTAAT
Found at i:81918477 original size:3 final size:3
Alignment explanation
Indices: 81918471--81918496 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
81918461 AATAAATAGA
81918471 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
81918497 ATCACCTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81920073 original size:19 final size:18
Alignment explanation
Indices: 81920049--81920087 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
81920039 TTTAAAAAGG
*
81920049 TAGTATTTTTTTTATTTTT
1 TAGTATTTTTTAT-TTTTT
81920068 TAGTATTTTTTATTTTTT
1 TAGTATTTTTTATTTTTT
81920086 TA
1 TA
81920088 TTTTCGAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (18 bp):
TAGTATTTTTTATTTTTT
Found at i:81921665 original size:145 final size:145
Alignment explanation
Indices: 81921402--81921691 Score: 571
Period size: 145 Copynumber: 2.0 Consensus size: 145
81921392 ATACAAAGCC
81921402 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
1 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
81921467 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
66 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
81921532 AAAAGATGACATTCG
131 AAAAGATGACATTCG
81921547 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
1 AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
*
81921612 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAGATGCATCCTAAAGATATGG
66 ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
81921677 AAAAGATGACATTCG
131 AAAAGATGACATTCG
81921692 TAACCATGTG
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 144 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (145 bp):
AGCCTAAAAGACAATTTCCTATTGCCTTACATTGACACCTTAGTGGGCAACACGGCAGGTTATTC
ATTATTCTCCTTCATGGATCATTTATTCAGATACAACCAGATTAAAATGCATCCTAAAGATATGG
AAAAGATGACATTCG
Found at i:81923805 original size:9 final size:9
Alignment explanation
Indices: 81923778--81923823 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
81923768 TGAGTTTTCG
*
81923778 AATTAGAAT
1 AATTCGAAT
* *
81923787 AACTCAAAT
1 AATTCGAAT
81923796 AATTCGAAT
1 AATTCGAAT
81923805 AATTCGAAT
1 AATTCGAAT
81923814 AATTCGAAT
1 AATTCGAAT
81923823 A
1 A
81923824 TCAAACTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:81924064 original size:19 final size:20
Alignment explanation
Indices: 81924024--81924064 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
81924014 CAAAAACCCT
*
81924024 CAAAACTTTTTATTTTCCCC
1 CAAAACTTTTTATCTTCCCC
81924044 CAAAA-TTTTTA-CTTCCTCC
1 CAAAACTTTTTATCTTCC-CC
81924063 CA
1 CA
81924065 CTTTCCCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (20 bp):
CAAAACTTTTTATCTTCCCC
Found at i:81926560 original size:43 final size:43
Alignment explanation
Indices: 81926502--81926654 Score: 153
Period size: 43 Copynumber: 3.4 Consensus size: 43
81926492 ATAGCAAATC
* *
81926502 TTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGAATTAATT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
* * ** *
81926545 TTATTTCCCTAAAGTTACAGTGGAATAGATTAAAGCTACAAGTTATAAATC
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG----AA--T-T-AATT
*
81926596 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
*
81926639 TTATTTCCCTAAAGTT
1 TTATCTCCCTAAAGTT
81926655 ATAGTGGAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 16
0.74 0.13 0.14
Matches are distributed among these distances:
43 46 0.53
44 1 0.01
45 1 0.01
47 4 0.05
49 1 0.01
50 1 0.01
51 33 0.38
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (43 bp):
TTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGAATTAATT
Found at i:81926620 original size:94 final size:94
Alignment explanation
Indices: 81926497--81926778 Score: 451
Period size: 94 Copynumber: 3.0 Consensus size: 94
81926487 TGAAGATAGC
*
81926497 AAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
81926562 CAGTGGAATAGATTAAAGCTACAAGTTAT
66 CAGTGGAATAGATTAAAGCTACAAGTTAT
81926591 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
* *
81926656 TAGTGGAATAGATTTAAGCTACAAGTTAT
66 CAGTGGAATAGATTAAAGCTACAAGTTAT
* * **
81926685 AAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATACCAAATTTTATTTCCCTGAAA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-A-TTAATTTTATTTCCCT-AAAG
*
81926749 -TGCAGTGGAATAGATTAAAGCTACAAGTTA
63 TTACAGTGGAATAGATTAAAGCTACAAGTTA
81926779 CAAAGTGGAG
Statistics
Matches: 175, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
94 130 0.74
95 28 0.16
96 14 0.08
97 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (94 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATTAATTTTATTTCCCTAAAGTTA
CAGTGGAATAGATTAAAGCTACAAGTTAT
Found at i:81926626 original size:51 final size:51
Alignment explanation
Indices: 81926545--81926720 Score: 170
Period size: 51 Copynumber: 3.6 Consensus size: 51
81926535 AGAATTAATT
* *
81926545 TTATTTCCCTAAAGTTACAGTGGAATAGATTAAAGCTACAAGTTATAAATC
1 TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
* * * *
81926596 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG----AA--T-T-AATT
1 TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
* * * *
81926639 TTATTTCCCTAAAGTTATAGTGGAATAGATTTAAGCTACAAGTTATAAATC
1 TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
* ** *
81926690 TTATCTCCCTGAAGTTGTAGTGGAGCAGATT
1 TTATCTCCCTAAAGTTACAGTGGAACAGATT
81926721 GAAGATACCA
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 31 0.32
44 1 0.01
45 1 0.01
47 4 0.04
49 1 0.01
50 1 0.01
51 59 0.60
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (51 bp):
TTATCTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTATAAATC
Found at i:81926832 original size:74 final size:74
Alignment explanation
Indices: 81926708--81926856 Score: 185
Period size: 74 Copynumber: 2.0 Consensus size: 74
81926698 CTGAAGTTGT
* * * * * *
81926708 AGTGGAGCAGATTGAAGATACCAAATTTTATTTCCCTGAAATGCAGTGGAATAGATTAAAGCTAC
1 AGTGGAGCAGATTGAAGATACCAAATATTATTTCCCTGAAATACAATGGAACAAATTAAAACTAC
81926773 AAGTTACAA
66 AAGTTACAA
* * *
81926782 AGTGGAGCAGATTGAATATA-CGAATATTATTTCCCT-AAAGTTATAATGGAACAAATTAAAACT
1 AGTGGAGCAGATTGAAGATACCAAATATTATTTCCCTGAAA--TACAATGGAACAAATTAAAACT
81926845 ACAAGTTACAA
64 ACAAGTTACAA
81926856 A
1 A
81926857 TATTATCTCC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
72 3 0.05
73 14 0.22
74 47 0.73
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (74 bp):
AGTGGAGCAGATTGAAGATACCAAATATTATTTCCCTGAAATACAATGGAACAAATTAAAACTAC
AAGTTACAA
Found at i:81926915 original size:44 final size:44
Alignment explanation
Indices: 81926847--81927713 Score: 324
Period size: 44 Copynumber: 18.8 Consensus size: 44
81926837 TTAAAACTAC
* * * ** * ** *
81926847 AAGTTACAAATATTATCTCCCTGAAGTTATAGTGTAATAGATTG
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* *
81926891 GAGTTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTA
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* *
81926935 AAATTACAAATCTGATCTCTCTGAAGTTGCAGTAGAGCAGATTA
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
*
81926979 AAATTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * *
81927023 AACTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGTAGATTG
1 AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * * *
81927067 AAGATACAAATCTTATCTC-CGTGAAGTTGTAATGGAGCAGATTGA
1 AAGTTACAAATCTGATCTCTC-TGAAGTTGCAGTGGAGCAGATT-A
* * * * ** * * *
81927112 AA-ATAGCAAATCTTATTTCCCCAAAGTTGTAGCGGAACAGATTA
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* ** * * * * * * *
81927156 AAGCTACAAATTACAAATTTTTTCTCCCTAAAGTTACAGCGAAGTAGAATGA
1 AAG-------TTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAG-ATTA
* * *
81927208 AACG--ATAAGTCCT-ATACT-TCTGAAGTTGCAGTAGGTTG--GATTA
1 AA-GTTACAAAT-CTGAT-CTCTCTGAAGTTGCAGT-GG-AGCAGATTA
* * * *
81927251 AA-TCTACCATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTA
1 AAGT-TA-C---A-AA-TCTGATCTCTCTGAAGTTGCAGTGG---AG-C-AGA-TTA
* * * * * *
81927307 CAAGCTACAAATGTTATCT-TCCTAAAGTTGCGGTGGAGCAGATTG
1 -AAGTTACAAATCTGATCTCT-CTGAAGTTGCAGTGGAGCAGATTA
* * *
81927352 AAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
1 AAG-TTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATT-A
* * * * * *
81927398 AA-ATAGTAAATCTTATCTCTCTGAAGTTGCAGTGAAGCATATTG
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * * * * *
81927442 AAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTA
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGA-T-----TA
* *
81927493 CAAGTTACAATTCTTATCT-TCTTGAAGTTGCAGTGGAGCAGATTA
1 -AAGTTACAAATCTGATCTCTC-TGAAGTTGCAGTGGAGCAGATTA
* ** * * * * *
81927538 AAGATAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTG
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
* * *
81927583 AAGATA-ATGAATCTTAT-TCCTCTGAAGTTGCAGTGGAACAGATTAAAGCTA
1 AAGTTACA--AATCTGATCT-CTCTGAAGTTGCAGTGGAGCAGA-T-----TA
* * * *
81927634 CAAGTTACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTG
1 -AAGTTACAAATCTGATCTCTCTGA-AGTTGCAGTGGAGCAGATTA
* * * *
81927679 AAGATAGCAAATCTTATTTCTCTAAAGTTGCAGTG
1 AAGTTA-CAAATCTGATCTCTCTGAAGTTGCAGTG
81927714 AAATAGATTA
Statistics
Matches: 640, Mismatches: 114, Indels: 137
0.72 0.13 0.15
Matches are distributed among these distances:
43 6 0.01
44 235 0.37
45 224 0.35
46 10 0.02
47 1 0.00
48 3 0.00
49 7 0.01
50 19 0.03
51 103 0.16
52 21 0.03
53 3 0.00
55 1 0.00
56 3 0.00
57 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (44 bp):
AAGTTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTA
Found at i:81926999 original size:88 final size:89
Alignment explanation
Indices: 81926894--81927712 Score: 367
Period size: 96 Copynumber: 8.8 Consensus size: 89
81926884 TAGATTGGAG
81926894 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
81926959 AGTTGCAGTAGAGCAGATT-AAAA
66 AGTTGCAGTAGAGCAGATTGAAAA
* *
81926982 TTACAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTAAACTTACAAATCTGATCTCTCTGA
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
* * *
81927047 AGTTGCAGTGGAGTAGATTGAAGA
66 AGTTGCAGTAGAGCAGATTGAAAA
* * * * *
81927071 -TACAAATCTTATCTC-CGTGAAGTTGTAATGGAGCAGATTGAAAA-TAGCAAATCTTATTTCCC
1 TTACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATT-AAAATTA-CAAATCTGATCTCTC
** * ** *
81927133 CAAAGTTGTAGCGGAACAGATTAAAGCTACAAA
63 TGAAGTTGCAGTAGAGCAGATT---G--A-AAA
* * * * * * * * * * ** * *
81927166 TTACAAATTTTTTCTCCCTAAAGTTACAGCGAAGTAGAATGAAACGATAAGTCCT-ATACT-TCT
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAAT-CTGAT-CTCTCT
** *
81927229 GAAGTTGCAGTAG-GTTGGATTAAATCTACCA
64 GAAGTTGCAGTAGAG-CAGATTGAA---A--A
* * * * * ** * *
81927260 TAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACAAATGTTATC
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGG---AG-C-AGA-TTA-AAATTACAAATCTGATC
* * * *
81927325 T-TCCTAAAGTTGCGGTGGAGCAGATTGAAGA
59 TCT-CTGAAGTTGCAGTAGAGCAGATTGAAAA
* * * *
81927356 TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA-TAGTAAATCTTATCTCTCT
1 TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAATTA-CAAATCTGATCTCTCT
* *
81927420 GAAGTTGCAGT-GAAGCATATTGAAGA
64 GAAGTTGCAGTAG-AGCAGATTGAAAA
* * * * * *
81927446 -TAGCAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAGTTACAATTCTTAT
1 TTA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT--A---A-AA-TTACAAATCTGAT
*
81927510 CT-TCTTGAAGTTGCAGTGGAGCAGATT-AAAGA
58 CTCTC-TGAAGTTGCAGTAGAGCAGATTGAAA-A
** * * * * * ** *
81927542 -TAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGATAATGAATCTTAT-TCCTC
1 TTA-CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAATTACAAATCTGATCT-CTC
* * *
81927605 TGAAGTTGCAGTGGAACAGATTAAAGCTACAAG
63 TGAAGTTGCAGTAGAGCAGATT---G--A-AAA
* * * * *
81927638 TTACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAGA-TAGCAAATCTTATTTCTC
1 TTACAAATCTTATCTCTCTGA-AGTTGCAGTGGAGCAGATT-AAAATTA-CAAATCTGATCTCTC
*
81927701 TAAAGTTGCAGT
63 TGAAGTTGCAGT
81927713 GAAATAGATT
Statistics
Matches: 562, Mismatches: 110, Indels: 110
0.72 0.14 0.14
Matches are distributed among these distances:
87 1 0.00
88 116 0.21
89 40 0.07
90 101 0.18
91 8 0.01
92 4 0.01
93 2 0.00
94 27 0.05
95 32 0.06
96 184 0.33
97 12 0.02
99 2 0.00
100 5 0.01
101 27 0.05
102 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (89 bp):
TTACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATTACAAATCTGATCTCTCTGA
AGTTGCAGTAGAGCAGATTGAAAA
Found at i:81927551 original size:96 final size:94
Alignment explanation
Indices: 81927267--81927952 Score: 371
Period size: 96 Copynumber: 7.2 Consensus size: 94
81927257 CCATAACAAG
* * * * *
81927267 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACAAATGTTATCTTCCTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAG-TAC-AATCTTATCTTCTTGA
* *
81927332 AGTTGCGGTGGAGCAGATTGAAGATAACAAA
64 AGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* *
81927363 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA---A-TAGTA-AATCTTATC-TCTCTGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATT-AAAGCTACAAGTACAATCTTATCTTCT-TGA
* *
81927422 AGTTGCAGTGAAGCATATTGAAGATAGCAAA
64 AGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* *
81927453 TCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAGTTACAATTCTTATCTTCTTGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAG-TACAA-TCTTATCTTCTTGA
* **
81927518 AGTTGCAGTGGAGCAGATTAAAGATAGTGAA
64 AGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* ** * * * *
81927549 TCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAG--ATAA-T-GAATCTTAT-TCCTCTGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTACAATCTTATCTTCT-TGAA
* * *
81927609 GTTGCAGTGGAACAGATTAAAGCTACAAGTTACAAA
65 GTTGCAGTGGAGCAGATTGAAG--A-TAG---CAAA
* * * * * *
81927645 TCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAG--A-TAGCA-AATCTTAT-TTCTCTAA
1 TCTTATCTCCCTGA-AGTTGCAGTGGAACAGATTAAAGCTACAAGTACAATCTTATCTTCT-TGA
* ** * *
81927704 AGTTGCAGTGAAATAGATTAAAGCTACGAGTTACAAA
64 AGTTGCAGTGGAGCAGATTGAAG--A-TAG---CAAA
* * * * ** * *
81927741 TCTTATCTTCTTGAAGTTACAGTAGAGTAGATTAAAG-----AG-ACAAATCTTATACCTC-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC-AATCTTAT-CTTCTTGA
* * * *
81927799 AGTTGTAGTGG-GTCGGATTAGATCTACTATAGCAAG
64 AGTTGCAGTGGAG-CAGATT-GA---A-GATAGCAAA
* * * * *
81927835 TCTTATCTCCCTGAAGTTACAGTGGAATATACTAAAGCTACAAGCTACAAACTTTATCTTCTTGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAG-TACAATC-TTATCTTCTTGA
* * * **
81927900 AGTTGCAGCGGAGTAGGTTGAAGATA-CGGA
64 AGTTGCAGTGGAGCAGATTGAAGATAGCAAA
*
81927930 TCTTATCTCCTTGAAGTTGCAGT
1 TCTTATCTCCCTGAAGTTGCAGT
81927953 AGAGTAAATT
Statistics
Matches: 469, Mismatches: 80, Indels: 83
0.74 0.13 0.13
Matches are distributed among these distances:
89 8 0.02
90 98 0.21
91 2 0.00
92 5 0.01
93 7 0.01
94 42 0.09
95 50 0.11
96 212 0.45
97 12 0.03
98 1 0.00
99 3 0.01
100 8 0.02
101 20 0.04
102 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (94 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTACAATCTTATCTTCTTGAAG
TTGCAGTGGAGCAGATTGAAGATAGCAAA
Found at i:81927598 original size:186 final size:186
Alignment explanation
Indices: 81927267--81927617 Score: 497
Period size: 186 Copynumber: 1.9 Consensus size: 186
81927257 CCATAACAAG
* * *
81927267 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTACAAATGTTATCTTCCTAA
1 TCTTATCTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGCTACAAATCTTATCTTCCTAA
* * *
81927332 AGTTGCGGTGGAGCAGATTGAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
66 AGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG
*
81927397 AAAATAGTAAATCTTA-TCTCTCTGAAGTTGCAGTGAAGCATATTGAAGATAGCAAA
131 AAAATAATAAATCTTATTC-CTCTGAAGTTGCAGTGAAGCATATTGAAGATAGCAAA
* * * * * *
81927453 TCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAGTTACAATTCTTATCTTCTTGA
1 TCTTATCTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGCTACAAATCTTATCTTCCTAA
*** * **
81927518 AGTTGCAGTGGAGCAGATTAAAGATAGTGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTG
66 AGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG
* *
81927583 AAGATAATGAATCTTATTCCTCTGAAGTTGCAGTG
131 AAAATAATAAATCTTATTCCTCTGAAGTTGCAGTG
81927618 GAACAGATTA
Statistics
Matches: 143, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
186 141 0.99
187 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31
Consensus pattern (186 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAACAGACTAAAGCTACAAGCTACAAATCTTATCTTCCTAA
AGTTGCAGTGGAGCAGATTAAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTG
AAAATAATAAATCTTATTCCTCTGAAGTTGCAGTGAAGCATATTGAAGATAGCAAA
Found at i:81927722 original size:45 final size:45
Alignment explanation
Indices: 81926897--81927713 Score: 417
Period size: 45 Copynumber: 17.6 Consensus size: 45
81926887 ATTGGAGTTA
* *
81926897 CAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT-AAAATTA-
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAG
* * * *
81926941 CAAATCTGATCTCTCTGAAGTTGCAGTAGAGCAGATT-AAAATTA-
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAG
* * * **
81926985 CAAATCTGATCTCTCTGAAGTTGCAGTGGAGCAGATTAAACTTA-
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * *
81927029 CAAATCTGATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATA-
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
81927073 CAAATCTTATCTC-CGTGAAGTTGTAATGGAGCAGATTGAAAATAG
1 CAAATCTTATTTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGATAG
* ** * * * * *
81927118 CAAATCTTATTTCCCCAAAGTTGTAGCGGAACAGATTAAAGCTA-
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * * * *
81927162 CAAATTACAAATTTTTTCTCCCTAAAGTTACAGCGAAGTAGAATGAAACGAT--
1 CAAA-T-C---TTATTTCT--CTGAAGTTGCAGTGGAGCAGATTG-AA-GATAG
* * * * * * *
81927214 -AAGTCCTA-TACTTCTGAAGTTGCAGTAGGTTG--GATTAAATCTACCATAA
1 CAAATCTTATTTC-TCTGAAGTTGCAGT-GG-AGCAGATT-GA---A-GATAG
* * * ** * * *
81927263 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAG
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG
* * * *
81927311 CTACAAATGTTATCTTC-CTAAAGTTGCGGTGGAGCAGATTGAAGATAA
1 ---CAAATCTTAT-TTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * *
81927359 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAG
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * *
81927404 TAAATCTTATCTCTCTGAAGTTGCAGTGAAGCATATTGAAGATAG
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
* * * * *
81927449 CAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAG
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG
* *
81927497 TTACAATTCTTATCTTCT-TGAAGTTGCAGTGGAGCAGATTAAAGATAG
1 ---CAAATCTTAT-TTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
** * * *
81927545 TGAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATTGAAGATAA
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
** * * * *
81927590 TGAATCTTATTCCTCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAG
1 CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG
* * *
81927638 TTACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAGATAG
1 ---CAAATCTTATTTCTCTGA-AGTTGCAGTGGAGCAGATTGAAGATAG
*
81927686 CAAATCTTATTTCTCTAAAGTTGCAGTG
1 CAAATCTTATTTCTCTGAAGTTGCAGTG
81927714 AAATAGATTA
Statistics
Matches: 606, Mismatches: 117, Indels: 99
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 181 0.30
45 242 0.40
46 6 0.01
47 7 0.01
48 9 0.01
49 14 0.02
50 24 0.04
51 112 0.18
52 8 0.01
53 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (45 bp):
CAAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTGAAGATAG
Found at i:81927722 original size:141 final size:141
Alignment explanation
Indices: 81927358--81927722 Score: 527
Period size: 141 Copynumber: 2.6 Consensus size: 141
81927348 ATTGAAGATA
* *
81927358 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGTAAATCTTATCTCTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCTCTGAA
* * *
81927423 GTTGCAGTGAAGCATATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAA
66 GTTGCAGTGAAACAGATTGAAGATAACAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAA
81927488 AGCTACAAGTT
131 AGCTACAAGTT
* * * * * *
81927499 ACAATTCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTAAAGATAGTGAATCTTATTTTTCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCTCTGAA
* ** *
81927564 GTTGCAGTGGAACAGATTGAAGATAATGAATCTTA-TTCCTCTGAAGTTGCAGTGGAACAGATTA
66 GTTGCAGTGAAACAGATTGAAGATAACAAATCTTATTTCC-CTGAAGTTGCAGTAGAACAGATTA
81927628 AAGCTACAAGTT
130 AAGCTACAAGTT
* * *
81927640 ACAAATCTTATCTCCCTGATA-TTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCTCTAA
1 ACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCTCTGA
*
81927704 AGTTGCAGTGAAATAGATT
65 AGTTGCAGTGAAACAGATT
81927723 AAAGCTACGA
Statistics
Matches: 196, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
140 4 0.02
141 191 0.97
142 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (141 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCTCTGAA
GTTGCAGTGAAACAGATTGAAGATAACAAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAA
AGCTACAAGTT
Found at i:81929727 original size:14 final size:15
Alignment explanation
Indices: 81929698--81929741 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
81929688 TTTTTACTAC
*
81929698 ATTTTTATTTCTTTT
1 ATTTTTATTACTTTT
81929713 ATTTTTATTACTTTAT
1 ATTTTTATTACTTT-T
*
81929729 GTATTTTATTACT
1 AT-TTTTATTACT
81929742 AATGCCATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 13 0.52
16 2 0.08
17 10 0.40
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (15 bp):
ATTTTTATTACTTTT
Found at i:81931271 original size:33 final size:35
Alignment explanation
Indices: 81931234--81931329 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 35
81931224 ATAGTTATAT
81931234 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTACTTAA
* *
81931267 TTAAAT-TTTATAA-ATAATTAATATTTATTACTTAA
1 TTAAATATTTAAAATATAATT--TATATATTACTTAA
*
81931302 --AAATATTTAAAATTTATATTTCATATAT
1 TTAAATATTTAAAATATA-ATTT-ATATAT
81931330 CAAAATATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.34
34 8 0.16
35 10 0.20
36 3 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTACTTAA
Found at i:81932591 original size:5 final size:5
Alignment explanation
Indices: 81932581--81932621 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
81932571 TTATGTTTTA
81932581 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
81932622 AAACTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:81933918 original size:15 final size:15
Alignment explanation
Indices: 81933898--81933954 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
81933888 CGATGAATTT
81933898 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
81933913 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
81933928 ATTGAATTTATATTG
1 ATTGAATTTATATTG
81933943 ATTGAA-TTATAT
1 ATTGAATTTATAT
81933955 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:81934355 original size:23 final size:22
Alignment explanation
Indices: 81934338--81934409 Score: 121
Period size: 21 Copynumber: 3.3 Consensus size: 22
81934328 AGGCACTTTA
81934338 TGTGTCGTGTATCAGGCACCTCG
1 TGTGTCG-GTATCAGGCACCTCG
81934361 TGTGTC-GTATCAGGCACCTCG
1 TGTGTCGGTATCAGGCACCTCG
81934382 TGTGTC-GTATCAGGCACCTCG
1 TGTGTCGGTATCAGGCACCTCG
81934403 TGTGTCG
1 TGTGTCG
81934410 TTTTAGGCAC
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
21 42 0.88
23 6 0.12
ACGTcount: A:0.12, C:0.26, G:0.31, T:0.31
Consensus pattern (22 bp):
TGTGTCGGTATCAGGCACCTCG
Found at i:81934428 original size:42 final size:42
Alignment explanation
Indices: 81934325--81934430 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
81934315 GGCTTTATCG
81934325 ATCAGGCACTTTATGTGTCGTGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTC--GTATCAGGCACCTCGTGTGTCGT
* **
81934369 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
81934411 TTTAGGCACTTTATGTGTCG
1 ATCAGGCACTTTATGTGTCG
81934431 CATACTGATC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 38 0.70
44 16 0.30
ACGTcount: A:0.15, C:0.24, G:0.27, T:0.34
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:81934430 original size:21 final size:21
Alignment explanation
Indices: 81934346--81934419 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
81934336 TATGTGTCGT
81934346 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
81934367 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
81934388 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
* *
81934409 GTTTTAGGCAC
1 GTATCAGGCAC
81934420 TTTATGTGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.15, C:0.27, G:0.28, T:0.30
Consensus pattern (21 bp):
GTATCAGGCACCTCGTGTGTC
Found at i:81939050 original size:5 final size:5
Alignment explanation
Indices: 81939040--81939080 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
81939030 TTATGTTTTA
81939040 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
81939081 AAACTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:81940378 original size:15 final size:15
Alignment explanation
Indices: 81940358--81940414 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
81940348 CGATGAATTT
81940358 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
81940373 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
81940388 ATTGAATTTATATTG
1 ATTGAATTTATATTG
81940403 ATTGAA-TTATAT
1 ATTGAATTTATAT
81940415 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:81940815 original size:23 final size:22
Alignment explanation
Indices: 81940798--81940869 Score: 121
Period size: 21 Copynumber: 3.3 Consensus size: 22
81940788 AGGCACTTTA
81940798 TGTGTCGTGTATCAGGCACCTCG
1 TGTGTCG-GTATCAGGCACCTCG
81940821 TGTGTC-GTATCAGGCACCTCG
1 TGTGTCGGTATCAGGCACCTCG
81940842 TGTGTC-GTATCAGGCACCTCG
1 TGTGTCGGTATCAGGCACCTCG
81940863 TGTGTCG
1 TGTGTCG
81940870 TTTTAGGCAC
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
21 42 0.88
23 6 0.12
ACGTcount: A:0.12, C:0.26, G:0.31, T:0.31
Consensus pattern (22 bp):
TGTGTCGGTATCAGGCACCTCG
Found at i:81940888 original size:42 final size:42
Alignment explanation
Indices: 81940785--81940890 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
81940775 GGCTTTATCG
81940785 ATCAGGCACTTTATGTGTCGTGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTC--GTATCAGGCACCTCGTGTGTCGT
* **
81940829 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
81940871 TTTAGGCACTTTATGTGTCG
1 ATCAGGCACTTTATGTGTCG
81940891 CATACTGATC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 38 0.70
44 16 0.30
ACGTcount: A:0.15, C:0.24, G:0.27, T:0.34
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:81940890 original size:21 final size:21
Alignment explanation
Indices: 81940806--81940879 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
81940796 TATGTGTCGT
81940806 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
81940827 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
81940848 GTATCAGGCACCTCGTGTGTC
1 GTATCAGGCACCTCGTGTGTC
* *
81940869 GTTTTAGGCAC
1 GTATCAGGCAC
81940880 TTTATGTGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.15, C:0.27, G:0.28, T:0.30
Consensus pattern (21 bp):
GTATCAGGCACCTCGTGTGTC
Found at i:81943707 original size:24 final size:24
Alignment explanation
Indices: 81943675--81943720 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
81943665 ATGTATCATT
81943675 ATTTAAAATTGATTTATAGTATTC
1 ATTTAAAATTGATTTATAGTATTC
* * *
81943699 ATTTCAAATTGTTTTATTGTAT
1 ATTTAAAATTGATTTATAGTAT
81943721 ATTATTTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (24 bp):
ATTTAAAATTGATTTATAGTATTC
Found at i:81956266 original size:88 final size:88
Alignment explanation
Indices: 81956144--81956343 Score: 337
Period size: 88 Copynumber: 2.3 Consensus size: 88
81956134 CCATGGCGAA
* * * *
81956144 TCTTATCTTCCTGAAGTTGCAGCGAAGTAGATTGAAGCCACTAACCTTATCTCCCTGAAGATGCA
1 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACA
81956209 GTGGAGTAGGTTGAAGTTACAAG
66 GTGGAGTAGGTTGAAGTTACAAG
*
81956232 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACG
1 TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACA
81956297 GTGGAGTAGGTTGAAGTTACAAG
66 GTGGAGTAGGTTGAAGTTACAAG
* *
81956320 TCTCATCTCCCTGAAGTTGCAGTG
1 TCTTATCTTCCTGAAGTTGCAGTG
81956344 GAGCGGGTTG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (88 bp):
TCTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAACCTTATCTCCCTGAAGATACA
GTGGAGTAGGTTGAAGTTACAAG
Found at i:81956345 original size:44 final size:44
Alignment explanation
Indices: 81956145--81956479 Score: 257
Period size: 44 Copynumber: 7.6 Consensus size: 44
81956135 CATGGCGAAT
* * * * *
81956145 CTTATCTTCCTGAAGTTGCAGCGAAGTAGATTGAAGCCACTAA-C
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTAC-AAGC
* * *
81956189 CTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTACAAGC
* * * ** *
81956233 CTTATCTTCCTGAAGTTGCAGTGAAGCAAATTGAAGCCACTAA-C
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTAC-AAGC
* * * * *
81956277 CTTATCTCCCTGAAGATACGGTGGAGTAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTACAAGC
* ** *
81956321 CTCATCTCCCTGAAGTTGCAGTGGAGCGGGTTGAAGATAGCAAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTA-CAAGC
* ** * * * **
81956366 CTTATTTCCCTGAAGTCACAGTGGAATAGATT-AATC-ACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTACAAGC
* * * * * *
81956408 CTTATCTCTCTGAAGTTGCAATAGAGT-GGATTAAAGCTATAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGG-TTGAAGCTACAAGC
*
81956452 CTTATCTCTCTGAAGTTGCAGTGGAGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGTA
81956480 CATTGAAGAT
Statistics
Matches: 222, Mismatches: 61, Indels: 15
0.74 0.20 0.05
Matches are distributed among these distances:
41 1 0.00
42 25 0.11
43 8 0.04
44 158 0.71
45 30 0.14
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGCTACAAGC
Found at i:81958687 original size:24 final size:24
Alignment explanation
Indices: 81958655--81958700 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
81958645 ATGTATCATT
81958655 ATTTAAAATTGATTTATAGTATTC
1 ATTTAAAATTGATTTATAGTATTC
* * *
81958679 ATTTCAAATTGTTTTATTGTAT
1 ATTTAAAATTGATTTATAGTAT
81958701 ATTATTTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (24 bp):
ATTTAAAATTGATTTATAGTATTC
Found at i:81964078 original size:45 final size:45
Alignment explanation
Indices: 81964028--81964118 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
81964018 ATAATCTAGA
* * * *
81964028 GGGTTTATTTGTTTGATCTGATCCAGTCTAATCTTTAAGGATAGG
1 GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
81964073 GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
1 GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
81964118 G
1 G
81964119 ATTGTCAACT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
GGGTTTAATTGTTTGACCTGATCCAATCCAATCTTTAAGGATAGG
Found at i:81966328 original size:25 final size:23
Alignment explanation
Indices: 81966276--81966330 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
81966266 TATAAATAGT
81966276 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
81966299 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
81966324 AATAGTG
1 AATAGTG
81966331 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:81967441 original size:27 final size:26
Alignment explanation
Indices: 81967393--81967600 Score: 201
Period size: 27 Copynumber: 7.9 Consensus size: 26
81967383 GCGAGGCTGC
* *
81967393 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
81967419 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
81967446 ---ATA-TGTGGTAGAGCCACCAGAT
1 CAGATATTGTGGCAGAGCCACCAGAT
** **
81967468 CAGATAATTGTGGCTTAGCCACCAGGG
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
*
81967495 CAGATATATGTAGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* **
81967522 CAGATAATTGTGGCATAGCCACCAGGG
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
*
81967549 CAGATATATGTAGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
81967576 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81967601 GACGCTTCCT
Statistics
Matches: 148, Mismatches: 23, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
22 18 0.12
23 3 0.02
25 2 0.01
26 5 0.03
27 115 0.78
28 5 0.03
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:81967444 original size:21 final size:22
Alignment explanation
Indices: 81967420--81967467 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
81967410 TCACCAGATA
81967420 CAGATAT-TGTGGCAGAGCCAC
1 CAGATATATGTGGCAGAGCCAC
*
81967441 CAGATATATGTGGTAGAGCCAC
1 CAGATATATGTGGCAGAGCCAC
81967463 CAGAT
1 CAGAT
81967468 CAGATAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (22 bp):
CAGATATATGTGGCAGAGCCAC
Found at i:81967504 original size:54 final size:54
Alignment explanation
Indices: 81967411--81967601 Score: 295
Period size: 54 Copynumber: 3.6 Consensus size: 54
81967401 GTGACGAAGT
* * *
81967411 CACCAGATACAGAT-ATTGTGGCAGAGCCA-C----CAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
*
81967460 CACCAGATCAGATAATTGTGGCTTAGCCACCAGGGCAGATATATGTAGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
81967514 CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
81967568 CACCAGATCAGATAATTGTGGCATAGCCACCAGG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGG
81967602 ACGCTTCCTC
Statistics
Matches: 131, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
48 5 0.04
49 21 0.16
50 1 0.01
54 104 0.79
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGGCAGATATATGTAGCAGAGC
Found at i:81969226 original size:26 final size:26
Alignment explanation
Indices: 81969195--81969302 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81969185 TGAAATGCCC
*
81969195 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81969221 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81969247 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81969273 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81969299 ATCA
1 ATCA
81969303 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81969901 original size:20 final size:22
Alignment explanation
Indices: 81969876--81969919 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
81969866 CTAATAACAT
*
81969876 TAAAATATATAT-ATATA-ATA
1 TAAAATACATATAATATATATA
81969896 TAAAATACATATAATATATATA
1 TAAAATACATATAATATATATA
81969918 TA
1 TA
81969920 TATTAGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 5 0.24
22 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAAATACATATAATATATATA
Found at i:81970014 original size:19 final size:19
Alignment explanation
Indices: 81969990--81970026 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81969980 TATAAATAAT
*
81969990 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
81970009 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
81970027 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:81970165 original size:30 final size:30
Alignment explanation
Indices: 81970112--81970186 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
81970102 TTGAAAACAT
*
81970112 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
81970142 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
81970172 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
81970187 TAGGGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:81973803 original size:16 final size:16
Alignment explanation
Indices: 81973784--81973815 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81973774 AAGTCTAGAA
81973784 AAATCATATAAAATGT
1 AAATCATATAAAATGT
81973800 AAATCATATAAAATGT
1 AAATCATATAAAATGT
81973816 GGCAAGTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (16 bp):
AAATCATATAAAATGT
Found at i:81977223 original size:26 final size:26
Alignment explanation
Indices: 81977179--81977245 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
81977169 AGTTCATAAT
* * *
81977179 ATTATAAAAAAATAAAAAACTGTAAAAA
1 ATTAT-AAAAATTATAAAACTAT-AAAA
*
81977207 ATTGT-AAAATTATAAAACTATAAAA
1 ATTATAAAAATTATAAAACTATAAAA
81977232 ATTATAAAAATTAT
1 ATTATAAAAATTAT
81977246 CAATAATTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
28 4 0.12
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (26 bp):
ATTATAAAAATTATAAAACTATAAAA
Found at i:81977253 original size:10 final size:9
Alignment explanation
Indices: 81977203--81977255 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
81977193 AAAAACTGTA
*
81977203 AAAAATTGT
1 AAAAATTAT
81977212 -AAAATTAT
1 AAAAATTAT
*
81977220 -AAAACTAT
1 AAAAATTAT
81977228 AAAAATTAT
1 AAAAATTAT
81977237 AAAAATTAT
1 AAAAATTAT
*
81977246 CAATAATTAT
1 -AAAAATTAT
81977256 TAAGAGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 14 0.37
9 16 0.42
10 8 0.21
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:81977348 original size:19 final size:19
Alignment explanation
Indices: 81977324--81977367 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
81977314 ATAAAATGTT
81977324 ATAAAATGTTAAAATATAA
1 ATAAAATGTTAAAATATAA
*
81977343 ATAAAATGTTATAATATAA
1 ATAAAATGTTAAAATATAA
*
81977362 TTAAAA
1 ATAAAA
81977368 GTTGTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
ATAAAATGTTAAAATATAA
Found at i:81977923 original size:16 final size:16
Alignment explanation
Indices: 81977882--81977927 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
81977872 CTTGGATTAG
*
81977882 CTCAAGTTCGAATTTT
1 CTCAAGTTTGAATTTT
*
81977898 TTCAAGTTTGAATTTT
1 CTCAAGTTTGAATTTT
81977914 CTCATA-TTTGAATT
1 CTCA-AGTTTGAATT
81977928 GTTACGAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 25 0.96
17 1 0.04
ACGTcount: A:0.26, C:0.13, G:0.11, T:0.50
Consensus pattern (16 bp):
CTCAAGTTTGAATTTT
Found at i:81983800 original size:34 final size:34
Alignment explanation
Indices: 81983748--81983815 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
81983738 AAGGTCAAAT
81983748 GCAGTCTCGGCCTAAGCCCATTTCAATTTCAGTA
1 GCAGTCTCGGCCTAAGCCCATTTCAATTTCAGTA
* *
81983782 GCAGTC-CGAGCCTTAGCCCATTTCAGTTTCAGTA
1 GCAGTCTCG-GCCTAAGCCCATTTCAATTTCAGTA
81983816 TCAAATATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 2 0.06
34 29 0.94
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (34 bp):
GCAGTCTCGGCCTAAGCCCATTTCAATTTCAGTA
Found at i:81984545 original size:35 final size:35
Alignment explanation
Indices: 81984493--81984567 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
81984483 AAGGCCTACT
*
81984493 TGGCTATCACACAGCCGTGTCTTGTGCGCATGACC
1 TGGCCATCACACAGCCGTGTCTTGTGCGCATGACC
*
81984528 TGGCCATCACACGGCCGTGTCTTGTGCGCATGACC
1 TGGCCATCACACAGCCGTGTCTTGTGCGCATGACC
81984563 TGGCC
1 TGGCC
81984568 TCGCCGATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.15, C:0.33, G:0.28, T:0.24
Consensus pattern (35 bp):
TGGCCATCACACAGCCGTGTCTTGTGCGCATGACC
Found at i:81985142 original size:6 final size:6
Alignment explanation
Indices: 81985131--81985156 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
81985121 GCTTTTGGGG
81985131 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
81985157 CTTTGATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:81992288 original size:42 final size:42
Alignment explanation
Indices: 81992241--81992329 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
81992231 TTACGTGCTG
*
81992241 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAC
1 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAA
81992283 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAA
1 TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAA
81992325 TTTTA
1 TTTTA
81992330 GAATGTAAAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.47
Consensus pattern (42 bp):
TTTTATTGAAGATATGATTGGATTTGTGTGAATCTATTAAAA
Found at i:81994815 original size:41 final size:40
Alignment explanation
Indices: 81994753--81994829 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 40
81994743 CAGCATTTAA
*
81994753 TTATTTTTTTAAATTTAAAAATATT-AAAAAATAATAATT
1 TTATATTTTTAAATTTAAAAATATTAAAAAAATAATAATT
* *
81994792 TTATATTTTTAGAATTTTTAAAATTTTAAAAAAATAAT
1 TTATATTTTTA-AA-TTTAAAAATATTAAAAAAATAAT
81994830 TAAATGCTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 10 0.31
40 2 0.06
41 10 0.31
42 10 0.31
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (40 bp):
TTATATTTTTAAATTTAAAAATATTAAAAAAATAATAATT
Found at i:81995213 original size:24 final size:24
Alignment explanation
Indices: 81995186--81995242 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
81995176 AAAATACAAG
* *
81995186 TTTAAAAT-TTAATAATTTTTATTT
1 TTTAAAATATTAATAA-ATTTATCT
* *
81995210 TTTATAATATTATTAAATTTATCT
1 TTTAAAATATTAATAAATTTATCT
81995234 TTTAAAATA
1 TTTAAAATA
81995243 AAAAGTTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTAAAATATTAATAAATTTATCT
Found at i:81996580 original size:22 final size:22
Alignment explanation
Indices: 81996555--81996602 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
81996545 AATTATGATC
*
81996555 ATTACTTTAATTGCAAT-ATTTA
1 ATTACTATAATT-CAATGATTTA
*
81996577 ATTACTATAATTCATTGATTTA
1 ATTACTATAATTCAATGATTTA
81996599 ATTA
1 ATTA
81996603 TTAATTTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (22 bp):
ATTACTATAATTCAATGATTTA
Found at i:81999714 original size:66 final size:66
Alignment explanation
Indices: 81999643--81999775 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 66
81999633 GCTTAGGTAC
* * * *
81999643 AAACTTTGCTCTAAAAACATGTTCCTCTCGATGAACAAAATAAGCGCTCTCTCCAATTTGTACAC
1 AAACTTTGCTCTAAAAACATATTCCTCTCAATAAACAAAATAAGCGCTCCCTCCAATTTGTACAC
81999708 A
66 A
* * * * * **
81999709 AAACTTTGGTCTAAATACATATTTCTTTCAATAAACAAAATAAGTGCTCCCTTTAATTTGTACAC
1 AAACTTTGCTCTAAAAACATATTCCTCTCAATAAACAAAATAAGCGCTCCCTCCAATTTGTACAC
81999774 A
66 A
81999775 A
1 A
81999776 TTAAATAAAC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (66 bp):
AAACTTTGCTCTAAAAACATATTCCTCTCAATAAACAAAATAAGCGCTCCCTCCAATTTGTACAC
A
Found at i:82002137 original size:75 final size:74
Alignment explanation
Indices: 82002014--82002163 Score: 246
Period size: 75 Copynumber: 2.0 Consensus size: 74
82002004 ATTGCCTCTA
* *
82002014 TACAAGGTATTATCGGTATGTCATTCCCATAGCTGATTCCAGTTGGGTTACCACCCTATGCCCTA
1 TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCCAGTTGGGTTACCACCCTATG-CCTA
82002079 CCGGCTTCAT
65 CCGGCTTCAT
* *
82002089 TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCTAGTTGGGTTACCACCCTATGCCTAT
1 TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCCAGTTGGGTTACCACCCTATGCCTAC
*
82002154 CGGGTTCAT
66 CGGCTTCAT
82002163 T
1 T
82002164 GTTTATTACT
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 13 0.19
75 57 0.81
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (74 bp):
TACAAGGTATTATCAGTATGTCATTCCCATAACTGATTCCAGTTGGGTTACCACCCTATGCCTAC
CGGCTTCAT
Done.