Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 251 of 320
Found at i:82008877 original size:12 final size:11
Alignment explanation
Indices: 82008861--82008890 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
82008851 GTATATTTTA
82008861 TTTTATATATT
1 TTTTATATATT
82008872 TCTTTATATATT
1 T-TTTATATATT
82008884 TTTTATA
1 TTTTATA
82008891 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:82009333 original size:14 final size:14
Alignment explanation
Indices: 82009314--82009343 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82009304 TCTATCTTTC
*
82009314 TTATATATTTTTTA
1 TTATATATTATTTA
82009328 TTATATATTATTTA
1 TTATATATTATTTA
82009342 TT
1 TT
82009344 TTGTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:82011126 original size:14 final size:14
Alignment explanation
Indices: 82011109--82011138 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82011099 TTGTACATGA
82011109 AATTCTTTCAATGG
1 AATTCTTTCAATGG
*
82011123 AATTCTTTTAATGG
1 AATTCTTTCAATGG
82011137 AA
1 AA
82011139 ACTGTGCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (14 bp):
AATTCTTTCAATGG
Found at i:82014785 original size:18 final size:18
Alignment explanation
Indices: 82014727--82014788 Score: 81
Period size: 18 Copynumber: 3.4 Consensus size: 18
82014717 ACATATAAAA
*
82014727 ATATAATAAAATAAATA-
1 ATATAATAAAATATATAC
82014744 ATATAATAAAAATATATAAC
1 ATATAAT-AAAATATAT-AC
*
82014764 ATATAATAAAATTTATAC
1 ATATAATAAAATATATAC
82014782 ATATAAT
1 ATATAAT
82014789 GTTACAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
17 7 0.17
18 17 0.43
19 9 0.22
20 7 0.17
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATAATAAAATATATAC
Found at i:82024862 original size:38 final size:38
Alignment explanation
Indices: 82024819--82024947 Score: 156
Period size: 38 Copynumber: 3.4 Consensus size: 38
82024809 TAAGATCCGA
82024819 AGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCG
1 AGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCG
* * * *
82024857 AGGCATTGGTACGAGTTACTAAATCCGGGTTAAGTCCG
1 AGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCG
* *
82024895 AGGCATTTG-ACGAGTTACT-ATACCGGGCTATGTCCCG
1 AGGCATTTGTACGAGTTACTAATTCCGGGCTAAG-CCCG
*
82024932 AAGG-ATTTGAACGAGT
1 -AGGCATTTGTACGAGT
82024948 AGCTATATCG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
36 9 0.12
37 18 0.23
38 51 0.65
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (38 bp):
AGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCG
Found at i:82038356 original size:9 final size:9
Alignment explanation
Indices: 82038337--82038377 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
82038327 TCATTTCTAA
82038337 ATATA-TGT
1 ATATATTGT
82038345 ATATATTGT
1 ATATATTGT
*
82038354 ATATATTTT
1 ATATATTGT
*
82038363 ATATATTTT
1 ATATATTGT
82038372 ATATAT
1 ATATAT
82038378 ATTTTTAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 5 0.16
9 26 0.84
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (9 bp):
ATATATTGT
Found at i:82038367 original size:11 final size:10
Alignment explanation
Indices: 82038344--82038404 Score: 54
Period size: 11 Copynumber: 5.9 Consensus size: 10
82038334 TAAATATATG
*
82038344 TATATA-TTG
1 TATATATTTT
82038353 TATATA-TTT
1 TATATATTTT
82038362 TATATATTTT
1 TATATATTTT
82038372 ATATATATTTT
1 -TATATATTTT
*
82038383 TAATGTTATTTGT
1 T-AT-ATATTT-T
82038396 TATATATTT
1 TATATATTT
82038405 CTTTTACTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
9 14 0.32
10 4 0.09
11 17 0.39
12 7 0.16
13 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (10 bp):
TATATATTTT
Found at i:82038766 original size:19 final size:20
Alignment explanation
Indices: 82038742--82038792 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
82038732 AGTAGTAGTA
82038742 GTATATGTTTAC-TATATAT
1 GTATATGTTTACATATATAT
* *
82038761 GTATATATCTTTCATATATAT
1 GTATATGT-TTACATATATAT
82038782 GTATATGTTTA
1 GTATATGTTTA
82038793 TGCAGTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.27
20 5 0.19
21 14 0.54
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (20 bp):
GTATATGTTTACATATATAT
Found at i:82038896 original size:25 final size:25
Alignment explanation
Indices: 82038859--82038929 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 25
82038849 TATATTAAGA
* *
82038859 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTATATACTTTTAAC
* * *
82038884 ACTATTTTGTGTATATACTTTTAAT
1 ACTATATTATGTATATACTTTTAAC
*
82038909 A-T-TATTATGTATTTA-TTTTAA
1 ACTATATTATGTATATACTTTTAA
82038930 TATATATGTA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
22 6 0.16
23 10 0.26
24 1 0.03
25 21 0.55
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (25 bp):
ACTATATTATGTATATACTTTTAAC
Found at i:82038927 original size:22 final size:21
Alignment explanation
Indices: 82038893--82038939 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
82038883 CACTATTTTG
82038893 TGTATATACTTTTAATATTATTA
1 TGTATATACTTTTAATA-TA-TA
*
82038916 TGTATTTA-TTTTAATATATA
1 TGTATATACTTTTAATATATA
82038936 TGTA
1 TGTA
82038940 CATATTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 2 0.09
22 8 0.35
23 7 0.30
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (21 bp):
TGTATATACTTTTAATATATA
Found at i:82038945 original size:20 final size:22
Alignment explanation
Indices: 82038893--82038946 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
82038883 CACTATTTTG
*
82038893 TGTATATACTTTTAATATTATTA
1 TGTACATA-TTTTAATATTATTA
**
82038916 TGTATTTATTTTAATA-TA-TA
1 TGTACATATTTTAATATTATTA
82038936 TGTACATATTT
1 TGTACATATTT
82038947 ATGTAGTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.39
21 2 0.07
22 8 0.29
23 7 0.25
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (22 bp):
TGTACATATTTTAATATTATTA
Found at i:82038945 original size:24 final size:22
Alignment explanation
Indices: 82038902--82038973 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
82038892 GTGTATATAC
**
82038902 TTTTAATATTATTATGTATTTA
1 TTTTAATATTATTACATATTTA
82038924 TTTTAATATATATGTACATATTTA
1 TTTTAATAT-TAT-TACATATTTA
* *
82038948 -TGTAGTATTATTA-ATATATATA
1 TTTTAATATTATTACATAT-T-TA
82038970 TTTT
1 TTTT
82038974 TTATGTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
20 4 0.10
21 3 0.08
22 14 0.35
23 11 0.28
24 8 0.20
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (22 bp):
TTTTAATATTATTACATATTTA
Found at i:82042919 original size:22 final size:22
Alignment explanation
Indices: 82042893--82042937 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
82042883 ATTCATGACT
82042893 AACATTCATTCGTCAGTTATTC
1 AACATTCATTCGTCAGTTATTC
* *
82042915 AACATTCATTTGTCATTTATTC
1 AACATTCATTCGTCAGTTATTC
82042937 A
1 A
82042938 TTCATCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (22 bp):
AACATTCATTCGTCAGTTATTC
Found at i:82051428 original size:78 final size:73
Alignment explanation
Indices: 82051233--82051434 Score: 282
Period size: 73 Copynumber: 2.7 Consensus size: 73
82051223 TGATGTTTTT
* **
82051233 ATTTCTATTTTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGG
82051297 TATTTTCA
66 TATTTTCA
**
82051305 ATTTCTATCTTTCAAAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAG
1 ATTTCTAT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAG
82051369 GTATTTCTTTTCA
65 GTA----TTTTCA
*
82051382 ATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
1 ATTTCT-ATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
82051435 GGAACTCACC
Statistics
Matches: 115, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
72 8 0.07
73 47 0.41
74 5 0.04
77 22 0.19
78 33 0.29
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (73 bp):
ATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGG
TATTTTCA
Found at i:82051568 original size:13 final size:14
Alignment explanation
Indices: 82051536--82051573 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
82051526 CATGTCGAGG
82051536 TATTTTCAAAATCT
1 TATTTTCAAAATCT
* *
82051550 TTTTTTCAAATTC-
1 TATTTTCAAAATCT
82051563 TATTTTCAAAA
1 TATTTTCAAAA
82051574 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTTTCAAAATCT
Found at i:82051628 original size:88 final size:88
Alignment explanation
Indices: 82051477--82051692 Score: 244
Period size: 88 Copynumber: 2.4 Consensus size: 88
82051467 CAATTTATGT
* * * *
82051477 TTTTCAAAAATCAAGTCATATTGCAAGAGGTGAGTTGAGCTTTGGGTCACATGTCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTATGGGTCACATGTCGAGCTATTTT
*
82051542 CAAAATCTTTTTTTCAAAT-TCT-A
66 CAAAATCTGTTTTT--AATGTCTGA
82051565 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-ATGGGCTCACGA-G-CTGAGCTAT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTATGGG-TCAC-ATGTC-GAGCTAT
** *
82051627 TTTCAATTTCTGTTTTTAATGTCTGT
63 TTTCAAAATCTGTTTTTAATGTCTGA
* * *
82051653 TTTTTAAAGAGTCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
82051693 GTCAGGATCA
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
86 3 0.03
87 8 0.07
88 70 0.63
89 30 0.27
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (88 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTATGGGTCACATGTCGAGCTATTTT
CAAAATCTGTTTTTAATGTCTGA
Found at i:82053417 original size:29 final size:31
Alignment explanation
Indices: 82053354--82053418 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
82053344 TTAATCTTCA
* **
82053354 TATTATTACTATTATTTCTTTATTTTTATTT
1 TATTATTACTATTATATCTTTATTTTTATAG
82053385 TATT-TTA-TATTATATCTTTAGTTTTT-TAG
1 TATTATTACTATTATATCTTTA-TTTTTATAG
82053414 TATTA
1 TATTA
82053419 GTTTTAGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
29 17 0.59
30 8 0.28
31 4 0.14
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (31 bp):
TATTATTACTATTATATCTTTATTTTTATAG
Found at i:82053565 original size:24 final size:23
Alignment explanation
Indices: 82053535--82053595 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
82053525 ATACATTATG
82053535 TGTATATTCTTTTAATAGATATTA
1 TGTATATTCTTTTAATA-ATATTA
* *
82053559 TGTATA-TATTTTAATATTATTA
1 TGTATATTCTTTTAATAATATTA
82053581 -GTTATATATCTTTTA
1 TG-TATAT-TCTTTTA
82053596 TACTATTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 9 0.29
23 9 0.29
24 12 0.39
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (23 bp):
TGTATATTCTTTTAATAATATTA
Found at i:82053738 original size:9 final size:9
Alignment explanation
Indices: 82053719--82053759 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
82053709 TCATTTCTAA
82053719 ATATA-TGT
1 ATATATTGT
82053727 ATATATTGT
1 ATATATTGT
*
82053736 ATATATTTT
1 ATATATTGT
82053745 ATATATAT-T
1 ATATAT-TGT
82053754 ATATAT
1 ATATAT
82053760 CTTTTTAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 5 0.17
9 24 0.80
10 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (9 bp):
ATATATTGT
Found at i:82054120 original size:19 final size:18
Alignment explanation
Indices: 82054096--82054147 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 18
82054086 ATTATTATTA
82054096 GTATATGTTTACTATATAT
1 GTATATGTTTA-TATATAT
*
82054115 GTATATATCTTTTATATATAT
1 G--TATAT-GTTTATATATAT
82054136 GTATATGTTTAT
1 GTATATGTTTAT
82054148 GCAGTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 5 0.18
19 6 0.21
21 13 0.46
22 4 0.14
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.56
Consensus pattern (18 bp):
GTATATGTTTATATATAT
Found at i:82054236 original size:26 final size:25
Alignment explanation
Indices: 82054192--82054290 Score: 76
Period size: 25 Copynumber: 3.9 Consensus size: 25
82054182 ATTATTTCTA
*
82054192 ATATGTATATATATATTTTAATAACT
1 ATAT-TATGTATATATTTTAATAACT
* *
82054218 ATATTATGTATGTATTTTTAA-CACT
1 ATATTATGTATATA-TTTTAATAACT
* * * *
82054243 ATTTTGTGTATATACTTTT-ATTATT
1 ATATTATGTATATA-TTTTAATAACT
*
82054268 ATCATTATGTATTTATTTTAATA
1 AT-ATTATGTATATATTTTAATA
82054291 TATATGTACA
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
24 1 0.02
25 34 0.61
26 21 0.38
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (25 bp):
ATATTATGTATATATTTTAATAACT
Found at i:82059332 original size:4 final size:4
Alignment explanation
Indices: 82059311--82059358 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
82059301 TAACCAATCT
* *
82059311 ATAA A-AA AT-A AT-A ATAA ATAA ATAA ATAA ACAA ACAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
82059356 ATA
1 ATA
82059359 TTGAATATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 9 0.22
4 31 0.77
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (4 bp):
ATAA
Found at i:82059538 original size:3 final size:3
Alignment explanation
Indices: 82059532--82059721 Score: 108
Period size: 3 Copynumber: 63.3 Consensus size: 3
82059522 CATTAATAGG
* * *
82059532 AAT AAT AAT ATT AAT AAT AAC AAT AAC AGA- AA- AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * * *
82059575 AAT AAT AAT AAC AAT AA- AAT AAT GAAT AAT GAC AAC AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* ** * *
82059619 AAAT AAT AAT AGA- AA- AAC AAT AAT AGA- AAT AGC AAC GAT AAT AAT
1 -AAT AAT AAT A-AT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * *
82059664 AAAT AAT AAG AGT AAT AGT AAT AAT AAT AAT AAAT AAT AAT AAT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
*
82059711 ATGT AAT AAT A
1 A-AT AAT AAT A
82059722 CTCTAAACAT
Statistics
Matches: 147, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
2 13 0.09
3 118 0.80
4 16 0.11
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:82059679 original size:19 final size:18
Alignment explanation
Indices: 82059657--82059721 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 18
82059647 ATAGCAACGA
*
82059657 TAATAATAAATAATAAGAG
1 TAATAAT-AATAATAATAG
* *
82059676 TAATAGTAATAATAATAA
1 TAATAATAATAATAATAG
82059694 TAAATAATAATAATAATATG
1 T-AATAATAATAATAATA-G
82059714 TAATAATA
1 TAATAATA
82059722 CTCTAAACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 10 0.26
19 28 0.72
20 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
TAATAATAATAATAATAG
Found at i:82059681 original size:31 final size:31
Alignment explanation
Indices: 82059623--82059703 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
82059613 TAATATAAAT
* * *
82059623 AATAATAGAAAAACAATAATAGAAATAGCAAC
1 AATAATA-ATAAATAATAAGAGAAATAGCAAC
* * * *
82059655 GATAATAATAAATAATAAGAGTAATAGTAAT
1 AATAATAATAAATAATAAGAGAAATAGCAAC
82059686 AATAATAATAAATAATAA
1 AATAATAATAAATAATAA
82059704 TAATAATATG
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 35 0.85
32 6 0.15
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (31 bp):
AATAATAATAAATAATAAGAGAAATAGCAAC
Found at i:82064140 original size:26 final size:25
Alignment explanation
Indices: 82064103--82064157 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
82064093 TGATACAAAT
82064103 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAAT-TTCCA
* *
82064129 TGATAATGGGTTAGGTAAATTTTCA
1 TGATAATAGGTTAGGTAAATTTCCA
82064154 TGAT
1 TGAT
82064158 TAGAATTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATTTCCA
Found at i:82065666 original size:26 final size:26
Alignment explanation
Indices: 82065601--82065676 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
82065591 GAAAGTAGCT
* * * *
82065601 AAATTACCATAATACCCCTATGTATGGA
1 AAATTACCGTTATACCCCTA-G-GTGCA
*
82065629 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACCGTTATACCCCTAGGTGCA
*
82065655 AAATTACCGTTATACCCGTAGG
1 AAATTACCGTTATACCCCTAGG
82065677 GTTAATTTTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 23 0.56
27 1 0.02
28 17 0.41
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (26 bp):
AAATTACCGTTATACCCCTAGGTGCA
Found at i:82065820 original size:27 final size:27
Alignment explanation
Indices: 82065779--82065891 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
82065769 GAGGAAGCGT
*
82065779 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
82065806 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
82065833 TCTGGTGGCCCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
82065861 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
82065887 TCTGG
1 TCTGG
82065892 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.74
28 14 0.19
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:82065884 original size:54 final size:54
Alignment explanation
Indices: 82065777--82065900 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
82065767 TGGAGGAAGC
* *
82065777 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
82065831 GTTCTGGTGGCCCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCCATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
**
82065885 GTTCTGGCAGCCATGC
1 GTTCTGGTGGCCATGC
82065901 TGCAAATTCT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 42 0.70
55 18 0.30
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (54 bp):
GTTCTGGTGGCCATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:82068547 original size:16 final size:16
Alignment explanation
Indices: 82068528--82068580 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
82068518 AAAGAAATTT
82068528 AAAAATAATATATTCA
1 AAAAATAATATATTCA
* *
82068544 AAAAATAATA-AGT-G
1 AAAAATAATATATTCA
*
82068558 AAAAATGATATATTCA
1 AAAAATAATATATTCA
82068574 AAAAATA
1 AAAAATA
82068581 TTATGTCAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
14 9 0.31
15 4 0.14
16 16 0.55
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (16 bp):
AAAAATAATATATTCA
Found at i:82077481 original size:47 final size:47
Alignment explanation
Indices: 82077412--82077504 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
82077402 TTGCATCTTT
*
82077412 AGCTGAGAATGCATATGGATCATGATACTGTACGATGAGTTAGAGAA
1 AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGAA
82077459 AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGA
1 AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGA
82077505 TGAATTGGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
AGCTGAGAATGCATATGGATCATGATACTGTACAATGAGTTAGAGAA
Found at i:82079598 original size:26 final size:26
Alignment explanation
Indices: 82079550--82079600 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
82079540 TAAGTAGCAA
* *
82079550 TAATTAAAAATACATCATTTAAAAAC
1 TAATTAAAAATACAACATGTAAAAAC
82079576 TAATTAAAAATTA-AACATGTAAAAA
1 TAATTAAAAA-TACAACATGTAAAAA
82079601 TACGTGCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (26 bp):
TAATTAAAAATACAACATGTAAAAAC
Found at i:82088760 original size:84 final size:84
Alignment explanation
Indices: 82088619--82088782 Score: 301
Period size: 84 Copynumber: 2.0 Consensus size: 84
82088609 TGCCACTACA
* *
82088619 AAAAAAAATGCAGCCCAAGCTTTTTTTGAACATATTTCACCAAAACTAAGAATTTGAGAGAGAGA
1 AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
*
82088684 GAGAGAGAGAATGAGTAGT
66 GAAAGAGAGAATGAGTAGT
82088703 AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
1 AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
82088768 GAAAGAGAGAATGAG
66 GAAAGAGAGAATGAG
82088783 CAGTTGAATA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (84 bp):
AAAAAAAATGCAGCCCAAGCTTTTCTTGAACATATTTAACCAAAACTAAGAATTTGAGAGAGAGA
GAAAGAGAGAATGAGTAGT
Found at i:82091879 original size:16 final size:16
Alignment explanation
Indices: 82091858--82091895 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82091848 AATGTTGGTC
*
82091858 TTTTTT-TTACAGTTT
1 TTTTTTATTAAAGTTT
82091873 ATTTTTTATTAAAGTTT
1 -TTTTTTATTAAAGTTT
82091890 TTTTTT
1 TTTTTT
82091896 GTTGTTCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (16 bp):
TTTTTTATTAAAGTTT
Found at i:82094104 original size:24 final size:24
Alignment explanation
Indices: 82094072--82094117 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
82094062 AGTTTAATAA
82094072 CAGAAAGCTCATAAGAGCTTAAAT
1 CAGAAAGCTCATAAGAGCTTAAAT
**
82094096 CAGAAAGCTCATGCGAGCTTAA
1 CAGAAAGCTCATAAGAGCTTAA
82094118 CGGGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (24 bp):
CAGAAAGCTCATAAGAGCTTAAAT
Found at i:82094333 original size:24 final size:23
Alignment explanation
Indices: 82094297--82094351 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
82094287 AAAAACCATG
82094297 TATCAGAAAGCTCAAGAGAGCTTA
1 TATCAGAAAGCTCAAGAGAG-TTA
* * * *
82094321 TATCAGGATGCTCATGTGAGTTA
1 TATCAGAAAGCTCAAGAGAGTTA
82094344 TATCAGAA
1 TATCAGAA
82094352 CGCTTGCGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (23 bp):
TATCAGAAAGCTCAAGAGAGTTA
Found at i:82099248 original size:46 final size:46
Alignment explanation
Indices: 82099190--82099361 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82099180 TGTAACCCGC
*
82099190 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
82099236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
82099286 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
82099329 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
82099362 GGATGCTCAA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:82099305 original size:93 final size:92
Alignment explanation
Indices: 82099197--82099367 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
82099187 CGCCCATAAG
* *
82099197 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82099262 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTT-GGATGCCTAGTTACATCTCA
*
82099290 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82099355 ACGAGTTGGATGC
66 ACGAGTTGGATGC
82099368 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 6 0.08
93 69 0.92
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTGGATGCCTAGTTACATCTCA
Found at i:82106872 original size:93 final size:93
Alignment explanation
Indices: 82106759--82106930 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82106749 CGCCCATAAG
* *
82106759 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82106824 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
82106852 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82106917 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82106931 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82106927 original size:46 final size:46
Alignment explanation
Indices: 82106752--82106927 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82106742 TGTAACCCGC
* * *
82106752 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
82106798 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82106848 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82106891 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82106928 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82108444 original size:44 final size:44
Alignment explanation
Indices: 82108372--82108456 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
82108362 ACATGTATCA
* * * *
82108372 CATCCATAATGAACTCGGACCAATTCAACGAGTTCGGATGCTCG
1 CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGCTCG
*
82108416 CATCCATAATGAACTCAGACTAACTCAACGAGCTCAGATGC
1 CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGC
82108457 CTCATATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (44 bp):
CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGCTCG
Found at i:82109211 original size:12 final size:12
Alignment explanation
Indices: 82109194--82109218 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82109184 TATTTCACAC
82109194 ATTTACAACTTT
1 ATTTACAACTTT
82109206 ATTTACAACTTT
1 ATTTACAACTTT
82109218 A
1 A
82109219 CAAAATAGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTACAACTTT
Found at i:82111907 original size:45 final size:45
Alignment explanation
Indices: 82111850--82111998 Score: 262
Period size: 45 Copynumber: 3.3 Consensus size: 45
82111840 TCTAATTTAT
82111850 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
1 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
*
82111895 ATTACAAAGTTTGTTACAAGTTTGTTTCAACACATGTCATTTAAA
1 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
* * *
82111940 ATTATAAAGTTTGTTCCAAGTTTCTTTCAACACATGTCATTCAAA
1 ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
82111985 ATTACAAAGTTTGT
1 ATTACAAAGTTTGT
82111999 ATTTTTGCAT
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 98 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (45 bp):
ATTACAAAGTTTGTTCCAAGTTTGTTTCAACACATGTCATTTAAA
Found at i:82124812 original size:19 final size:21
Alignment explanation
Indices: 82124774--82124816 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
82124764 AGATTACAAG
*
82124774 ATCATATCTTCAATATTGCAT
1 ATCATATCTTCAAGATTGCAT
82124795 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
82124814 ATC
1 ATC
82124817 CTTAAAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
20 1 0.05
21 8 0.38
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.40
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:82135464 original size:17 final size:18
Alignment explanation
Indices: 82135442--82135480 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
82135432 TACTAAAATG
*
82135442 TTTTAT-TAAACGACAGT
1 TTTTATGTAAACAACAGT
*
82135459 TTTTATGTAAACAAGAGT
1 TTTTATGTAAACAACAGT
82135477 TTTT
1 TTTT
82135481 CTTACAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (18 bp):
TTTTATGTAAACAACAGT
Found at i:82137800 original size:40 final size:40
Alignment explanation
Indices: 82137745--82137826 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
82137735 TTCCCGAAAT
*
82137745 GAATAAGGTCTTGCATTTGTTTCAGATGGAATTTAGCTCA
1 GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
82137785 GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
1 GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
82137825 GA
1 GA
82137827 CGGGTAATCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.35
Consensus pattern (40 bp):
GAATAAGGTCTTGCATTTGTTGCAGATGGAATTTAGCTCA
Found at i:82155373 original size:10 final size:10
Alignment explanation
Indices: 82155343--82155394 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
82155333 TTAGAAAAAA
*
82155343 TTAAATTTCT
1 TTAAATTTTT
* *
82155353 TTATATATTT
1 TTAAATTTTT
*
82155363 TTAGATTTTT
1 TTAAATTTTT
82155373 TTAAATTTTT
1 TTAAATTTTT
82155383 TTATAATTTTT
1 TTA-AATTTTT
82155394 T
1 T
82155395 AAAAAATGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 27 0.77
11 8 0.23
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (10 bp):
TTAAATTTTT
Found at i:82155442 original size:19 final size:21
Alignment explanation
Indices: 82155406--82155448 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
82155396 AAAAATGAAA
*
82155406 TTTGAATTTTTTATAAA-TAT
1 TTTGAATTTTTGATAAATTAT
82155426 TTTGAATTTTTGA-AAATTAT
1 TTTGAATTTTTGATAAATTAT
82155446 TTT
1 TTT
82155449 TTTGTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTGAATTTTTGATAAATTAT
Found at i:82156929 original size:37 final size:37
Alignment explanation
Indices: 82156879--82156953 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
82156869 TAGTAGGAAC
* *
82156879 ACCAAAATGAAACTGTAGAGAATTTCTTTGAGGTTGT
1 ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
82156916 ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
1 ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
82156953 A
1 A
82156954 GTTAGAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (37 bp):
ACCAAAATGAAACTGTACAGAATTTCTTTAAGGTTGT
Found at i:82173935 original size:18 final size:18
Alignment explanation
Indices: 82173909--82173951 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
82173899 TGATAGTAAA
*
82173909 GAATTAGAAAAGAAGCTT
1 GAATCAGAAAAGAAGCTT
82173927 GAATCAGAAAAGAAGCTT
1 GAATCAGAAAAGAAGCTT
82173945 GAATCAG
1 GAATCAG
82173952 TACCAGTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.23, T:0.19
Consensus pattern (18 bp):
GAATCAGAAAAGAAGCTT
Found at i:82175768 original size:93 final size:93
Alignment explanation
Indices: 82175604--82175774 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
82175594 GCCCCTAAGT
* * * *
82175604 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82175669 CAAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGGATGCCTAGTTACATTTCAC
* *
82175697 GAACTCGGACTCAACTCAAAGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
82175762 CGAGTTCGGATGC
66 CAAGTTCGGATGC
82175775 TCAACCATTC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82175771 original size:46 final size:46
Alignment explanation
Indices: 82175599--82175771 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
82175589 AACCCGCCCC
* * * *
82175599 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
82175645 TAAGTGAACTTGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
82175693 TCA-CGAACTCGGACTCAACTCAAAGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82175738 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82175772 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 58 0.58
47 26 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82176224 original size:30 final size:30
Alignment explanation
Indices: 82176190--82176249 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
82176180 ATTTAATACG
*
82176190 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
82176220 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
82176250 GGCTCGGGAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:82178702 original size:23 final size:24
Alignment explanation
Indices: 82178676--82178721 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
82178666 CTTCGCTGTC
*
82178676 TCAA-ATTCAAGTCTTTTGTGACA
1 TCAAGATTCAAGACTTTTGTGACA
*
82178699 TCAAGTATTTAAGACTTTTGTGA
1 TCAAG-ATTCAAGACTTTTGTGA
82178722 TCGGTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
25 15 0.79
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (24 bp):
TCAAGATTCAAGACTTTTGTGACA
Found at i:82183210 original size:46 final size:45
Alignment explanation
Indices: 82183143--82183314 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
82183133 AACCCGCCCC
* *
82183143 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
** *
82183189 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAAAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * * * *
82183237 TCA-CGAACTCGGACTCAACTCAAAGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
82183282 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
82183315 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 57 0.57
47 26 0.26
48 3 0.03
49 1 0.01
50 2 0.02
51 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:82183256 original size:93 final size:93
Alignment explanation
Indices: 82183148--82183318 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
82183138 GCCCCTAAGT
* * * *
82183148 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82183213 CGAGTTCGGATGCCTAGTTAAATTTCAC
66 CGAGTTCGGATGCCTAGTTAAATTTCAC
* * *
82183241 GAACTCGGACTCAACTCAAAGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82183306 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82183319 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTAAATTTCAC
Found at i:82190961 original size:108 final size:109
Alignment explanation
Indices: 82190770--82190979 Score: 239
Period size: 108 Copynumber: 1.9 Consensus size: 109
82190760 CTTTTTTGTT
* ** *
82190770 ATATTAGCTCCTTTAGTTAGATCGTTAAATGTTAGTGGTCTTATCCTTGAGTCTCAAGTTTGATT
1 ATATTAGCTCATTTAGTTAGATCGTTAAATAATAGTGATCTTATCCTTGAGTCTCAAGTTTGATT
*
82190835 CTTCTTCTACAAACATTTGTA-TTTTTTATTTCATATTTTTATC
66 CATCTTCTACAAACATTTGTATTTTTTTATTTCATATTTTTATC
* * * * *
82190878 ATATTAGCTCATTTGGTTAGATGGTTAAATAATAGTGAT-TTCATCTTTGAGTC-CTAGATTTTA
1 ATATTAGCTCATTTAGTTAGATCGTTAAATAATAGTGATCTT-ATCCTTGAGTCTCAAG-TTTGA
* *
82190941 TTCATCTTCTA-AGCATATTTGTACTTTTTTTTATTTCAT
64 TTCATCTTCTACA-AACATTTGTA--TTTTTTTATTTCAT
82190980 GTTGTTTCAA
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
107 6 0.07
108 65 0.77
111 13 0.15
ACGTcount: A:0.24, C:0.13, G:0.12, T:0.50
Consensus pattern (109 bp):
ATATTAGCTCATTTAGTTAGATCGTTAAATAATAGTGATCTTATCCTTGAGTCTCAAGTTTGATT
CATCTTCTACAAACATTTGTATTTTTTTATTTCATATTTTTATC
Found at i:82191110 original size:95 final size:101
Alignment explanation
Indices: 82190998--82191199 Score: 267
Period size: 95 Copynumber: 2.0 Consensus size: 101
82190988 AAGTTTTTTT
* ** * *
82190998 TATTTTAAATTAATAACTCTTTTATTTATA-AAATCAAA-TA-ATAA-ATAT-GTGATTATATAA
1 TATTTAAAATTAATAACTCCGTTATTTATATAAAT-AAATTATATAATATATAATAATTATATAA
82191058 T-AAAATATATTTTTTATA-TATCATTATGTTAACA-A
65 TAAAAATATATTTTTTATATTATCATTATGTTAA-ATA
*
82191093 TATTTAAAATTACTAACTCCGTTATTTATATAAATAAATTATATAATATATAATAATTATATAAT
1 TATTTAAAATTAATAACTCCGTTATTTATATAAATAAATTATATAATATATAATAATTATATAAT
82191158 AAAAATATATTTTTTATATTTATCATTATGTTAAATA
66 AAAAATATATTTTTTATA-TTATCATTATGTTAAATA
82191195 TATTT
1 TATTT
82191200 TATTTTTTAA
Statistics
Matches: 92, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
95 29 0.32
96 6 0.07
97 4 0.04
98 4 0.04
99 11 0.12
100 17 0.18
101 1 0.01
102 20 0.22
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (101 bp):
TATTTAAAATTAATAACTCCGTTATTTATATAAATAAATTATATAATATATAATAATTATATAAT
AAAAATATATTTTTTATATTATCATTATGTTAAATA
Found at i:82191150 original size:18 final size:20
Alignment explanation
Indices: 82191119--82191158 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
82191109 CTCCGTTATT
82191119 TATATAAATAAATTATATAA
1 TATATAAATAAATTATATAA
82191139 TATAT-AAT-AATTATATAA
1 TATATAAATAAATTATATAA
82191157 TA
1 TA
82191159 AAAATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
19 3 0.15
20 5 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TATATAAATAAATTATATAA
Found at i:82195758 original size:17 final size:18
Alignment explanation
Indices: 82195736--82195771 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82195726 TAGATGAGTT
82195736 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
82195753 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
82195771 A
1 A
82195772 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:82196046 original size:18 final size:19
Alignment explanation
Indices: 82196010--82196046 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
82196000 GTAAATTTTA
*
82196010 TTGAATTGAATTTAGAAAT
1 TTGAATTGAATTGAGAAAT
82196029 TTGAATTGAA-TGAGAAAT
1 TTGAATTGAATTGAGAAAT
82196047 ACGTGTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (19 bp):
TTGAATTGAATTGAGAAAT
Found at i:82196440 original size:41 final size:37
Alignment explanation
Indices: 82196394--82196504 Score: 96
Period size: 38 Copynumber: 2.9 Consensus size: 37
82196384 TCGACCTCAA
82196394 GTCGATGAGACACTGGGTGCCACTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGCCAC---TTTACTTCGGATAG
* ** * * *
82196434 ATTCGATGAGGTACTGGGTACCACTTTACTTTGGTTAG
1 -GTCGATGAGACACTGGGTGCCACTTTACTTCGGATAG
* * *
82196472 GCCGATGAGACACTGGGTGTCAACTTTGCTTCG
1 GTCGATGAGACACTGGGTG-CCACTTTACTTCG
82196505 AACTGTCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
37 14 0.25
38 22 0.40
41 19 0.35
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (37 bp):
GTCGATGAGACACTGGGTGCCACTTTACTTCGGATAG
Found at i:82196487 original size:37 final size:39
Alignment explanation
Indices: 82196396--82196489 Score: 93
Period size: 41 Copynumber: 2.4 Consensus size: 39
82196386 GACCTCAAGT
* **
82196396 CGATGAGACACTGGGTGCCACTATTTTACTTCGGATAGATT
1 CGATGAGACACTGGGTACCAC--TTTTACTTCGGATAGAGC
** * *
82196437 CGATGAGGTACTGGGTACCAC-TTTACTTTGGTTAG-GC
1 CGATGAGACACTGGGTACCACTTTTACTTCGGATAGAGC
82196474 CGATGAGACACTGGGT
1 CGATGAGACACTGGGT
82196490 GTCAACTTTG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
37 14 0.32
38 12 0.27
41 18 0.41
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (39 bp):
CGATGAGACACTGGGTACCACTTTTACTTCGGATAGAGC
Found at i:82197630 original size:22 final size:21
Alignment explanation
Indices: 82197604--82197663 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
82197594 CCTGTGGCTA
82197604 AGGCACACGCCCATGTGA-AG
1 AGGCACACGCCCATGTGATAG
* * * *
82197624 AGGGGCACATGGCCGTGTGATTG
1 A--GGCACACGCCCATGTGATAG
82197647 AGGCACACGCCCATGTG
1 AGGCACACGCCCATGTG
82197664 GACTAGGGAC
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
20 1 0.03
21 13 0.43
22 14 0.47
23 2 0.07
ACGTcount: A:0.23, C:0.27, G:0.35, T:0.15
Consensus pattern (21 bp):
AGGCACACGCCCATGTGATAG
Found at i:82203130 original size:9 final size:9
Alignment explanation
Indices: 82203116--82203141 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
82203106 ATTAATAGAT
82203116 GCTCAAAAG
1 GCTCAAAAG
82203125 GCTCAAAAG
1 GCTCAAAAG
82203134 GCTCAAAA
1 GCTCAAAA
82203142 ATCTTACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.19, T:0.12
Consensus pattern (9 bp):
GCTCAAAAG
Found at i:82203192 original size:27 final size:27
Alignment explanation
Indices: 82203140--82203194 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
82203130 AAAGGCTCAA
* *
82203140 AAATCTTACAAAAATTATGGCGTTTTG
1 AAATCTCACAAAAATTATGGAGTTTTG
* *
82203167 AAATCTCACAGAAATTATGGATTTTTG
1 AAATCTCACAAAAATTATGGAGTTTTG
82203194 A
1 A
82203195 TGTTTAGACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (27 bp):
AAATCTCACAAAAATTATGGAGTTTTG
Found at i:82208792 original size:40 final size:40
Alignment explanation
Indices: 82208755--82208926 Score: 267
Period size: 40 Copynumber: 4.3 Consensus size: 40
82208745 GCTACTCGTT
* *
82208755 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82208795 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82208835 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
82208875 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82208914 CAAATGCCTTCGG
1 CAAATGCCTTCGG
82208927 ATCTTAGTCC
Statistics
Matches: 124, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 34 0.27
40 88 0.71
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82208939 original size:79 final size:81
Alignment explanation
Indices: 82208755--82208972 Score: 277
Period size: 80 Copynumber: 2.7 Consensus size: 81
82208745 GCTACTCGTT
*
82208755 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
82208819 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
* * *
82208835 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
82208898 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
* * * * *
82208914 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCATAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
82208973 GCCTGGACAT
Statistics
Matches: 120, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 4 0.03
79 56 0.47
80 58 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCA
Found at i:82208939 original size:119 final size:120
Alignment explanation
Indices: 82208757--82208972 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
82208747 TACTCGTTCA
*
82208757 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
82208822 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
82208877 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
82208939 ATATGGTCACTTAGCATAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
82208973 GCCTGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 60 0.72
120 19 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:82210161 original size:56 final size:56
Alignment explanation
Indices: 82210101--82210220 Score: 213
Period size: 56 Copynumber: 2.1 Consensus size: 56
82210091 TATTAGTTTA
*
82210101 TTGCCCATGCTTTTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
82210157 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
82210213 TTACCCAT
1 TTGCCCAT
82210221 CATCCCTAGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:82213822 original size:16 final size:18
Alignment explanation
Indices: 82213786--82213827 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
82213776 AGAAGGGAGG
* *
82213786 AAAACAAAATGAG-AAAC
1 AAAAGAAAATGAGAAAAA
82213803 AAAAGAAAATG-GAAAAA
1 AAAAGAAAATGAGAAAAA
82213820 AAAAGAAA
1 AAAAGAAA
82213828 GTTAAAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.76, C:0.05, G:0.14, T:0.05
Consensus pattern (18 bp):
AAAAGAAAATGAGAAAAA
Found at i:82215881 original size:46 final size:44
Alignment explanation
Indices: 82215777--82215884 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
82215767 TGTCTTTGAC
** * * *
82215777 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
82215821 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
82215867 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
82215885 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:82217696 original size:14 final size:14
Alignment explanation
Indices: 82217670--82217703 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
82217660 CTTAGTAAGC
82217670 CATATACAAATAAA
1 CATATACAAATAAA
82217684 CATA-ACAATATAAA
1 CATATACAA-ATAAA
82217698 CATATA
1 CATATA
82217704 AGCATCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 13 0.72
15 1 0.06
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.24
Consensus pattern (14 bp):
CATATACAAATAAA
Found at i:82220111 original size:55 final size:54
Alignment explanation
Indices: 82220029--82220188 Score: 191
Period size: 55 Copynumber: 3.0 Consensus size: 54
82220019 TAAATTTGAA
*
82220029 AAAAAAATTTGGGGTTTTGGGGGAAGTAAAAGTTTTGTGGGAAAAAGTAAAAGG
1 AAAAAAGTTTGGGGTTTTGGGGGAAGTAAAAGTTTTGTGGGAAAAAGTAAAAGG
* * * * * *
82220083 AAAAAGGTTTTGGGGATTTGGAGGAAGTAAAAGTTTTGAGGG-GAAAGTAAAAAG
1 AAAAAAG-TTTGGGGTTTTGGGGGAAGTAAAAGTTTTGTGGGAAAAAGTAAAAGG
* * * *
82220137 AAAAAAGTTTGGAGTTTTGGGGGAAATAAAA-TTTT-TGGAAAAAAATAAAAGG
1 AAAAAAGTTTGGGGTTTTGGGGGAAGTAAAAGTTTTGTGGGAAAAAGTAAAAGG
82220189 GTTTGAGGGA
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
51 2 0.02
52 13 0.15
53 20 0.23
54 21 0.24
55 31 0.36
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (54 bp):
AAAAAAGTTTGGGGTTTTGGGGGAAGTAAAAGTTTTGTGGGAAAAAGTAAAAGG
Found at i:82220217 original size:23 final size:23
Alignment explanation
Indices: 82220173--82220217 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
82220163 TAAAATTTTT
**
82220173 GGAAAAAAATAAAAGGGTTTGAG
1 GGAAAAAAATAAAAGGACTTGAG
* *
82220196 GGAAGAAAATAAAATGACTTGA
1 GGAAAAAAATAAAAGGACTTGA
82220218 TATTTAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.27, T:0.18
Consensus pattern (23 bp):
GGAAAAAAATAAAAGGACTTGAG
Found at i:82224243 original size:42 final size:43
Alignment explanation
Indices: 82224186--82224291 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
82224176 TGAGATTTAT
* *
82224186 GTGTAAGACCATGTCTGGGACATTGACATCG-TATTTCATTTC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTCATTAC
* * *
82224228 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTCATTAC
* * *
82224271 ATGTAAGACCACGTTTGGGAC
1 GTGTAAGACCATGTCTGGGAC
82224292 GTTGGTATTG
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 28 0.52
43 26 0.48
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTCATTAC
Found at i:82227966 original size:13 final size:13
Alignment explanation
Indices: 82227930--82228040 Score: 82
Period size: 13 Copynumber: 8.4 Consensus size: 13
82227920 ATCCAATGTT
*
82227930 CCATTTCATATAT
1 CCATTTCATATAA
*
82227943 CTATTTCCATATAA
1 CCATTT-CATATAA
*
82227957 CCGA-TTCATATCA
1 CC-ATTTCATATAA
*
82227970 CCATTTCATATAT
1 CCATTTCATATAA
** *
82227983 TTATTTTTATATAA
1 CCA-TTTCATATAA
82227997 CCGA-TTCATATAA
1 CC-ATTTCATATAA
82228010 CCATTTCATATAA
1 CCATTTCATATAA
* * *
82228023 ACACTTCATCTAA
1 CCATTTCATATAA
82228036 CCATT
1 CCATT
82228041 CCATTTACTT
Statistics
Matches: 74, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
12 2 0.03
13 53 0.72
14 17 0.23
15 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:82227974 original size:40 final size:40
Alignment explanation
Indices: 82227930--82228021 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
82227920 ATCCAATGTT
*
82227930 CCATTTCATATATCTATTTCCATATAACCGATTCATATCA
1 CCATTTCATATATCTATTTCCATATAACCGATTCATATAA
* **
82227970 CCATTTCATATATTTATTTTTATATAACCGATTCATATAA
1 CCATTTCATATATCTATTTCCATATAACCGATTCATATAA
82228010 CCATTTCATATA
1 CCATTTCATATA
82228022 AACACTTCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.34, C:0.21, G:0.02, T:0.43
Consensus pattern (40 bp):
CCATTTCATATATCTATTTCCATATAACCGATTCATATAA
Found at i:82238467 original size:16 final size:16
Alignment explanation
Indices: 82238443--82238476 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82238433 AAACCCCAAC
*
82238443 GTCGTGACGACGCGAT
1 GTCGCGACGACGCGAT
*
82238459 GTCGCGACGATGCGAT
1 GTCGCGACGACGCGAT
82238475 GT
1 GT
82238477 GATTTTCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.21
Consensus pattern (16 bp):
GTCGCGACGACGCGAT
Found at i:82242370 original size:32 final size:31
Alignment explanation
Indices: 82242293--82242373 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 31
82242283 GTAGTTTGCC
82242293 ACTTGAACTTGTCC-AAAAGTCCTACTTGGT
1 ACTTGAACTTGTCCAAAAAGTCCTACTTGGT
* *
82242323 ACCT-ACACTTGTCCAAAAAGTACCTAGTTGGT
1 ACTTGA-ACTTGTCCAAAAAGT-CCTACTTGGT
* *
82242355 GCTTGAACTTATCCAAAAA
1 ACTTGAACTTGTCCAAAAA
82242374 ATTATACTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 1 0.02
30 11 0.26
31 6 0.14
32 23 0.55
33 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (31 bp):
ACTTGAACTTGTCCAAAAAGTCCTACTTGGT
Found at i:82242424 original size:8 final size:8
Alignment explanation
Indices: 82242411--82242436 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
82242401 TTTAAAAATA
82242411 TTTTTAAT
1 TTTTTAAT
82242419 TTTTTAAT
1 TTTTTAAT
82242427 TTTTTAAT
1 TTTTTAAT
82242435 TT
1 TT
82242437 ATTTCCACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTAAT
Found at i:82244351 original size:29 final size:28
Alignment explanation
Indices: 82244296--82244351 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
82244286 GATATATACA
* *
82244296 ATATAAAAATATATAAAAGAATTAGTAT
1 ATATAAAAATATATAAAAAAATGAGTAT
82244324 ATATAAAAA-ATATAAAATAAAGTGAGTA
1 ATATAAAAATATATAAAA-AAA-TGAGTA
82244352 ATTGTTAACG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (28 bp):
ATATAAAAATATATAAAAAAATGAGTAT
Found at i:82244410 original size:12 final size:13
Alignment explanation
Indices: 82244392--82244447 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
82244382 TAAAAATATG
82244392 ATATTTAATAATA
1 ATATTTAATAATA
*
82244405 AT-TTTAAAAATA
1 ATATTTAATAATA
* *
82244417 GTATTTAATATACA
1 ATATTTAATA-ATA
*
82244431 ATATATAATATATA
1 ATATTTAATA-ATA
82244445 ATA
1 ATA
82244448 ACAAAAAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
12 10 0.29
13 8 0.24
14 16 0.47
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:82244611 original size:19 final size:20
Alignment explanation
Indices: 82244566--82244612 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
82244556 TATCAGTTTA
*
82244566 AAATGAAAT-AACACATAAT
1 AAATGAAATAAACAAATAAT
*
82244585 AAAT-AAATAAATAAATAAT
1 AAATGAAATAAACAAATAAT
82244604 -AATGAAATA
1 AAATGAAATA
82244613 TGTATATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.23
Consensus pattern (20 bp):
AAATGAAATAAACAAATAAT
Found at i:82244730 original size:28 final size:28
Alignment explanation
Indices: 82244660--82244718 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
82244650 TTACAAATTT
82244660 TAAAATTATAAATAATATAATGAATAATA
1 TAAAA-TATAAATAATATAATGAATAATA
* *
82244689 TAAAACATAAATAATATAATGGATAATA
1 TAAAATATAAATAATATAATGAATAATA
82244717 TA
1 TA
82244719 CGATATACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (28 bp):
TAAAATATAAATAATATAATGAATAATA
Found at i:82244752 original size:13 final size:13
Alignment explanation
Indices: 82244734--82244778 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
82244724 TACATAACAT
82244734 ATAATAAAAAATA
1 ATAATAAAAAATA
**
82244747 ATAATAAGTAATA
1 ATAATAAAAAATA
82244760 TATAATAAAAATATA
1 -ATAATAAAAA-ATA
82244775 ATAA
1 ATAA
82244779 ATGTTATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 11 0.42
14 12 0.46
15 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (13 bp):
ATAATAAAAAATA
Found at i:82244769 original size:25 final size:25
Alignment explanation
Indices: 82244667--82244809 Score: 87
Period size: 28 Copynumber: 5.5 Consensus size: 25
82244657 TTTTAAAATT
* *
82244667 ATAAATAATATAATGAATAATATAAAA
1 ATAAATAATAT-AT-AATAAAATAATA
* *
82244694 CATAAATAATATAATGGATAATATACGAT-
1 -ATAAATAATAT-AT-AATAAAATA--ATA
* *
82244723 ATACATAACATATAATAAAAAATAATA
1 ATAAATAATATATAAT--AAAATAATA
*
82244750 ATAAGTAATATATAATAAAA-ATATA
1 ATAAATAATATATAATAAAATA-ATA
**
82244775 ATAAATGTTATATAATAAAAT-ATA
1 ATAAATAATATATAATAAAATAATA
82244799 ATAAAT-ATATA
1 ATAAATAATATA
82244810 GGAAAATAAT
Statistics
Matches: 95, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
23 4 0.04
24 10 0.11
25 24 0.25
26 4 0.04
27 15 0.16
28 37 0.39
30 1 0.01
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (25 bp):
ATAAATAATATATAATAAAATAATA
Found at i:82244799 original size:10 final size:10
Alignment explanation
Indices: 82244721--82244809 Score: 58
Period size: 10 Copynumber: 8.5 Consensus size: 10
82244711 ATAATATACG
*
82244721 ATATACATAAC
1 ATATA-ATAAA
82244732 ATATAATAAA
1 ATATAATAAA
*
82244742 AAATAAT--A
1 ATATAATAAA
* *
82244750 ATA-AGTAAT
1 ATATAATAAA
82244759 ATATAATAAAA
1 ATATAAT-AAA
82244770 ATATAATAAA
1 ATATAATAAA
82244780 TGTTATATAATAAA
1 ----ATATAATAAA
82244794 ATATAATAAA
1 ATATAATAAA
82244804 TATATA
1 -ATATA
82244810 GGAAAATAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
7 2 0.03
8 3 0.05
9 3 0.05
10 25 0.40
11 19 0.31
14 10 0.16
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
ATATAATAAA
Found at i:82244877 original size:28 final size:28
Alignment explanation
Indices: 82244814--82244897 Score: 72
Period size: 26 Copynumber: 3.2 Consensus size: 28
82244804 TATATAGGAA
** *
82244814 AATAATATATGATAAATAAAAATTTT-AT
1 AATAATATAT-ATAAATAGTATTTTTAAT
82244842 AA-AA-ATATATAAATAGTATTTTTAAT
1 AATAATATATATAAATAGTATTTTTAAT
* *
82244868 AATAATATATGT--ATAGTTTTTTTAA-
1 AATAATATATATAAATAGTATTTTTAAT
82244893 AATAA
1 AATAA
82244898 AAAATAACAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
25 17 0.35
26 20 0.42
27 4 0.08
28 7 0.15
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (28 bp):
AATAATATATATAAATAGTATTTTTAAT
Found at i:82246064 original size:20 final size:21
Alignment explanation
Indices: 82246039--82246077 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
82246029 GGTCTGTTTG
82246039 GGTCTAGTTTAAGT-TGGGCT
1 GGTCTAGTTTAAGTCTGGGCT
82246059 GGTCTAGTTTAAGTCTGGG
1 GGTCTAGTTTAAGTCTGGG
82246078 TTTGCTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.38
Consensus pattern (21 bp):
GGTCTAGTTTAAGTCTGGGCT
Found at i:82247613 original size:19 final size:18
Alignment explanation
Indices: 82247591--82247627 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
82247581 AAAAAAATTT
82247591 AAAATTCAAAATATTTATA
1 AAAATTCAAAA-ATTTATA
*
82247610 AAAATTCTAAAATTTATA
1 AAAATTCAAAAATTTATA
82247628 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTCAAAAATTTATA
Found at i:82248595 original size:15 final size:15
Alignment explanation
Indices: 82248572--82248606 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
82248562 CTTTGTCCCT
*
82248572 AAAACGTAGCAATGA
1 AAAATGTAGCAATGA
82248587 AAAATGTAGCAATGA
1 AAAATGTAGCAATGA
82248602 AAAAT
1 AAAAT
82248607 TTTCAAGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (15 bp):
AAAATGTAGCAATGA
Found at i:82249105 original size:43 final size:42
Alignment explanation
Indices: 82249010--82249105 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
82249000 TATCTGACAA
* * ** *
82249010 AAAAACGCCGCTAAAAGTCATGGCTTTTAGTGGCGTTTGTGG
1 AAAAACGCCGCTAAAAGCCATGACTTTTAGCAGCGTTTGTGC
* *
82249052 AAAAAGCGCCGCTAAAAGCCATGACTTTTAGCAGCGCTTTTTTC
1 AAAAA-CGCCGCTAAAAGCCATGACTTTTAGCAGCG-TTTGTGC
*
82249096 ACAAACGCCG
1 AAAAACGCCG
82249106 TTAATTTTGG
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 5 0.11
43 31 0.70
44 8 0.18
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAGCCATGACTTTTAGCAGCGTTTGTGC
Found at i:82249217 original size:31 final size:31
Alignment explanation
Indices: 82249159--82249244 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 31
82249149 AACCCTTCCT
*
82249159 GCATTAAATCCAACCAAAACACAGCAAATATA
1 GCATAAAATCCAACCAAAA-ACAGCAAATATA
* *
82249191 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATAAAATCCAACCAAAAACAGCAAATATA
* *
82249222 GCATAAAAATACAATCAAAAACA
1 GCAT-AAAATCCAACCAAAAACA
82249245 TTAAATCTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 15 0.31
32 33 0.69
ACGTcount: A:0.56, C:0.22, G:0.08, T:0.14
Consensus pattern (31 bp):
GCATAAAATCCAACCAAAAACAGCAAATATA
Found at i:82249483 original size:21 final size:20
Alignment explanation
Indices: 82249454--82249498 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
82249444 ACTTTTTGCT
82249454 CTGCTCTG-CTACCATCGCTG
1 CTGCTCTGCCT-CCATCGCTG
*
82249474 CTGCTTCTGCCTCCCTCGCTG
1 CTGC-TCTGCCTCCATCGCTG
82249495 CTGC
1 CTGC
82249499 CTCCGCTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 4 0.18
21 16 0.73
22 2 0.09
ACGTcount: A:0.04, C:0.44, G:0.20, T:0.31
Consensus pattern (20 bp):
CTGCTCTGCCTCCATCGCTG
Found at i:82249937 original size:13 final size:14
Alignment explanation
Indices: 82249911--82249939 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
82249901 ACTAACGACG
82249911 AATTAAACCATTAT
1 AATTAAACCATTAT
82249925 AATTAAA-CATTAT
1 AATTAAACCATTAT
82249938 AA
1 AA
82249940 ATATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:82255011 original size:9 final size:9
Alignment explanation
Indices: 82254997--82255085 Score: 71
Period size: 9 Copynumber: 10.0 Consensus size: 9
82254987 TAAGTATAAT
82254997 TAAGTTATG
1 TAAGTTATG
82255006 TAAGTTATG
1 TAAGTTATG
82255015 TAAGTTATG
1 TAAGTTATG
* *
82255024 -AATTTTGATCTT
1 TAA-GTT-A--TG
*
82255036 TAAATTATG
1 TAAGTTATG
*
82255045 TAAGTTACG
1 TAAGTTATG
82255054 T-A-TTATG
1 TAAGTTATG
82255061 TAAGTTATG
1 TAAGTTATG
82255070 T-A-TTATG
1 TAAGTTATG
82255077 TAAGTTATG
1 TAAGTTATG
82255086 AAATTTGATC
Statistics
Matches: 64, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
7 11 0.17
8 6 0.09
9 40 0.62
10 1 0.02
11 1 0.02
12 3 0.05
13 2 0.03
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:82255062 original size:46 final size:47
Alignment explanation
Indices: 82254997--82255310 Score: 218
Period size: 46 Copynumber: 6.5 Consensus size: 47
82254987 TAAGTATAAT
* *
82254997 TAAGTTATGTAAGTTATGTAAGTTATGAATTTTGATCTTT-AAATTATG
1 TAAGTTATGT-A-TTATGTAAGTTATGAAATTTGAACTTTGAAATTATG
* * *
82255045 TAAGTTACGTATTATGTAAGTTATG-TATTATGTAAGTTATGAAATT-TG
1 TAAGTTATGTATTATGTAAGTTATGAAATT-TG-AACTT-TGAAATTATG
** * *
82255093 -ATCTTTAAAT-TATTATATAAGTTATGTAAATTAAGTAACTTATGAAATT-TG
1 TA-AGTT--ATGTATTATGTAAGTTATG-AAATT-TG-AACTT-TGAAATTATG
* * *
82255144 -ATGGATTA--AATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATG
1 TA-AG-TTATGTATTATGTAAGTTATGAAATTTGAACTTTGAA--ATTATG
* * **
82255192 CAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCTTT-AAATTATG
1 TAAGTTATGT--ATTATGTAAGTTATGAAATTTGAACTTTGAAATTATG
* *
82255240 TAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTT-AAATTATG
1 TAAGTTATGTATTATGTAAGTTATGAAATTTGAACTTTGAAATTATG
*
82255286 TAAGTCATGTATTATGTAAGTTATG
1 TAAGTTATGTATTATGTAAGTTATG
82255311 CATTATGTAA
Statistics
Matches: 219, Mismatches: 29, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
45 5 0.02
46 77 0.35
47 12 0.05
48 37 0.17
49 35 0.16
50 4 0.02
51 47 0.21
52 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (47 bp):
TAAGTTATGTATTATGTAAGTTATGAAATTTGAACTTTGAAATTATG
Found at i:82255161 original size:82 final size:81
Alignment explanation
Indices: 82255071--82255248 Score: 284
Period size: 82 Copynumber: 2.2 Consensus size: 81
82255061 TAAGTTATGT
* *
82255071 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATATAAGTTATGTAAATTAAGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATACAAGTTATGTAAATTAAGTAACTTAT
*
82255136 GAAATTTGATGGATTAA
66 GAAATTTGAT-CATTAA
* *
82255153 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGCAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATACAAGTTATGTAAATTAAGTAACTTAT
* *
82255218 GAAATTTGGTCTTTAA
66 GAAATTTGATCATTAA
82255234 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
82255249 TATCATGTAA
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
81 19 0.21
82 70 0.79
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.44
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATACAAGTTATGTAAATTAAGTAACTTAT
GAAATTTGATCATTAA
Found at i:82255185 original size:30 final size:30
Alignment explanation
Indices: 82255119--82255356 Score: 137
Period size: 30 Copynumber: 7.6 Consensus size: 30
82255109 ATAAGTTATG
* * ***
82255119 TAAATTAAGTAACTTATGAAATTTGATGGAT
1 TAAATTATGTAAGTTATGAAATTTGA-ACTT
82255150 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
*
82255180 TAAATTATTATGCAAGTTATGTAAATTATGTAACTT
1 T-AA--ATTATGTAAGTTATG-AAATT-TG-AACTT
* *
82255216 ATGAAATT-TG---GTCT-TTAAATTATGTAAGTT
1 -T-AAATTATGTAAGT-TATGAAATT-TG-AACTT
** * *
82255246 ATGTATCATGTAAGTTATGAAATTTGATCTT
1 -TAAATTATGTAAGTTATGAAATTTGAACTT
* * *
82255277 TAAATTATGTAAGTCATG-TATTATGTAAGTT
1 TAAATTATGTAAGTTATGAAATT-TG-AACTT
**
82255308 ATGCATTATGTAAGTTATGAAATTTGAACTT
1 -TAAATTATGTAAGTTATGAAATTTGAACTT
82255339 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
82255357 TATTATGTAA
Statistics
Matches: 161, Mismatches: 29, Indels: 35
0.72 0.13 0.16
Matches are distributed among these distances:
29 5 0.03
30 51 0.32
31 39 0.24
32 21 0.13
33 25 0.16
34 7 0.04
35 5 0.03
36 5 0.03
37 3 0.02
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGAACTT
Found at i:82255209 original size:18 final size:17
Alignment explanation
Indices: 82255151--82255223 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 17
82255141 TTGATGGATT
* *
82255151 AAATTATGTAAGTTATG
1 AAATTATGCAACTTATG
*
82255168 AAATT-TG-AACTT-TA
1 AAATTATGCAACTTATG
*
82255182 AATTATTATGCAAGTTATG
1 AA--ATTATGCAACTTATG
*
82255201 TAAATTATGTAACTTATG
1 -AAATTATGCAACTTATG
82255219 AAATT
1 AAATT
82255224 TGGTCTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
14 3 0.07
15 4 0.09
16 5 0.11
17 12 0.27
18 17 0.39
19 1 0.02
20 2 0.05
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.42
Consensus pattern (17 bp):
AAATTATGCAACTTATG
Found at i:82255209 original size:51 final size:51
Alignment explanation
Indices: 82255150--82255284 Score: 190
Period size: 51 Copynumber: 2.7 Consensus size: 51
82255140 TTTGATGGAT
*
82255150 TAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGCAAGTTATG
1 TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGCAAGTTATG
* * *
82255201 TAAATTATGTAACTTATGAAATTTGGTCTTT-AA--ATTATGTAAGTTATG
1 TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGCAAGTTATG
*
82255249 T--ATCATGTAAGTTATGAAATTTGATCTTTAAATTAT
1 TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTAT
82255285 GTAAGTCATG
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
46 25 0.34
47 2 0.03
48 15 0.20
49 2 0.03
50 2 0.03
51 28 0.38
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.45
Consensus pattern (51 bp):
TAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGCAAGTTATG
Found at i:82255303 original size:62 final size:62
Alignment explanation
Indices: 82255234--82255373 Score: 235
Period size: 62 Copynumber: 2.3 Consensus size: 62
82255224 TGGTCTTTAA
* *
82255234 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGT
1 ATTATGTAAGTTATGCATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGT
* *
82255296 ATTATGTAAGTTATGCATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGT
1 ATTATGTAAGTTATGCATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGT
*
82255358 ATTATGTAAATTATGC
1 ATTATGTAAGTTATGC
82255374 GAGTTGCTGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 73 1.00
ACGTcount: A:0.35, C:0.04, G:0.16, T:0.45
Consensus pattern (62 bp):
ATTATGTAAGTTATGCATCATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGT
Found at i:82255323 original size:16 final size:16
Alignment explanation
Indices: 82254997--82255372 Score: 121
Period size: 16 Copynumber: 23.6 Consensus size: 16
82254987 TAAGTATAAT
82254997 TAAGTTATGTAAGTTATG
1 TAAGTTATG-AA-TTATG
*
82255015 TAAGTTATGAATTTTG
1 TAAGTTATGAATTATG
** *
82255031 -ATCTT-TAAATTATG
1 TAAGTTATGAATTATG
* *
82255045 TAAGTTACGTATTATG
1 TAAGTTATGAATTATG
*
82255061 TAAGTTATGTATTATG
1 TAAGTTATGAATTATG
82255077 TAAGTTATGAAATT-TG
1 TAAGTTATG-AATTATG
** * *
82255093 -ATCTTTAAAT-TATTATA
1 TA-AGTT--ATGAATTATG
*
82255110 TAAGTTATGTAAATTAAG
1 TAAGTTATG--AATTATG
*
82255128 TAACTTATGAAATT-TG
1 TAAGTTATG-AATTATG
*
82255144 -ATGGATTA--AATTATG
1 TA-AG-TTATGAATTATG
82255159 TAAGTTATGAAATT-TG
1 TAAGTTATG-AATTATG
* *
82255175 -AACTTTAAAT-TATTATG
1 TAA-GTT--ATGAATTATG
*
82255192 CAAGTTATGTAAATTATG
1 TAAGTTATG--AATTATG
*
82255210 TAACTTATGAAATT-TG
1 TAAGTTATG-AATTATG
* *
82255226 ---GTCTTTAAATTATG
1 TAAGT-TATGAATTATG
* *
82255240 TAAGTTATGTATCATG
1 TAAGTTATGAATTATG
82255256 TAAGTTATGAAATT-TG
1 TAAGTTATG-AATTATG
** *
82255272 -ATCTT-TAAATTATG
1 TAAGTTATGAATTATG
* *
82255286 TAAGTCATGTATTATG
1 TAAGTTATGAATTATG
*
82255302 TAAGTTATGCATTATG
1 TAAGTTATGAATTATG
82255318 TAAGTTATGAAATT-TG
1 TAAGTTATG-AATTATG
* *
82255334 -AACTT-TAAATTATG
1 TAAGTTATGAATTATG
*
82255348 TAAGTTATGTATTATG
1 TAAGTTATGAATTATG
*
82255364 TAAATTATG
1 TAAGTTATG
82255373 CGAGTTGCTG
Statistics
Matches: 261, Mismatches: 58, Indels: 80
0.65 0.15 0.20
Matches are distributed among these distances:
13 13 0.05
14 24 0.09
15 30 0.11
16 117 0.45
17 36 0.14
18 41 0.16
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.45
Consensus pattern (16 bp):
TAAGTTATGAATTATG
Found at i:82255420 original size:17 final size:17
Alignment explanation
Indices: 82255398--82255431 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82255388 CTTGAAAAAA
82255398 ATATATTACTTTTGAAT
1 ATATATTACTTTTGAAT
82255415 ATATATTACTTTTGAAT
1 ATATATTACTTTTGAAT
82255432 TAGAAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTACTTTTGAAT
Found at i:82256892 original size:14 final size:15
Alignment explanation
Indices: 82256870--82256906 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
82256860 TTAGTATACA
82256870 ATATAATTTTACTTC
1 ATATAATTTTACTTC
82256885 ATAT-ATTTTACTTC
1 ATATAATTTTACTTC
*
82256899 AAATAATT
1 ATATAATT
82256907 ATTATAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTTTACTTC
Found at i:82259054 original size:37 final size:37
Alignment explanation
Indices: 82258995--82259095 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
82258985 AGATGCACAG
*
82258995 GGCGAAGGCGATAGAGGAGATGGGTTGCGATACACGA
1 GGCGAAGGCGATGGAGGAGATGGGTTGCGATACACGA
* * *
82259032 GGCGAAGGCGATGGAGGGGATGGTTTGCGATACACGG
1 GGCGAAGGCGATGGAGGAGATGGGTTGCGATACACGA
* *
82259069 GGAGAAGGCGACGGAGGAGATGGGTTG
1 GGCGAAGGCGATGGAGGAGATGGGTTG
82259096 TAATGCACAG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.26, C:0.12, G:0.49, T:0.14
Consensus pattern (37 bp):
GGCGAAGGCGATGGAGGAGATGGGTTGCGATACACGA
Found at i:82259109 original size:37 final size:37
Alignment explanation
Indices: 82258990--82259110 Score: 136
Period size: 37 Copynumber: 3.3 Consensus size: 37
82258980 GCAGCAGATG
* *
82258990 CACAGGGCGAAGGCGATAGAGGAGATGGGTTGCGATA
1 CACAGGGAGAAGGCGATGGAGGAGATGGGTTGCGATA
* * *
82259027 CAC-GAGGCGAAGGCGATGGAGGGGATGGTTTGCGATA
1 CACAG-GGAGAAGGCGATGGAGGAGATGGGTTGCGATA
* * ** *
82259064 CACGGGGAGAAGGCGACGGAGGAGATGGGTTGTAATG
1 CACAGGGAGAAGGCGATGGAGGAGATGGGTTGCGATA
82259101 CACAGGGAGA
1 CACAGGGAGA
82259111 TTTGGGGGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
36 1 0.01
37 69 0.97
38 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.45, T:0.13
Consensus pattern (37 bp):
CACAGGGAGAAGGCGATGGAGGAGATGGGTTGCGATA
Found at i:82260032 original size:14 final size:14
Alignment explanation
Indices: 82259997--82260071 Score: 71
Period size: 14 Copynumber: 5.4 Consensus size: 14
82259987 CCTAAACTCG
*
82259997 AAACCCTAAAC-CT
1 AAACCATAAACACT
*
82260010 AAAATCATAAACACT
1 -AAACCATAAACACT
*
82260025 AAACCATAAACACC
1 AAACCATAAACACT
*
82260039 AAACCATAAACACC
1 AAACCATAAACACT
* * *
82260053 AAACAACAAACCCT
1 AAACCATAAACACT
82260067 AAACC
1 AAACC
82260072 CCAAACTTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
14 49 0.96
15 2 0.04
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCATAAACACT
Found at i:82260056 original size:21 final size:21
Alignment explanation
Indices: 82260032--82260077 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
82260022 ACTAAACCAT
*
82260032 AAACACCAAACCATAAACACC
1 AAACAACAAACCATAAACACC
* *
82260053 AAACAACAAACCCTAAACCCC
1 AAACAACAAACCATAAACACC
82260074 AAAC
1 AAAC
82260078 TTTAAACCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.39, G:0.00, T:0.04
Consensus pattern (21 bp):
AAACAACAAACCATAAACACC
Found at i:82260591 original size:14 final size:14
Alignment explanation
Indices: 82260544--82260592 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
82260534 ATTAAAACCC
*
82260544 TAAACCCTAAAATAA
1 TAAACCCTAAAA-CA
82260559 TAAACCCTAAAAC-
1 TAAACCCTAAAACA
*
82260572 TCAAACTCTAAAACA
1 T-AAACCCTAAAACA
82260587 TAAACC
1 TAAACC
82260593 ATACCCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 1 0.03
14 15 0.52
15 13 0.45
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAACCCTAAAACA
Found at i:82261038 original size:105 final size:105
Alignment explanation
Indices: 82260856--82261045 Score: 335
Period size: 105 Copynumber: 1.8 Consensus size: 105
82260846 CTCTATAGCC
* * * *
82260856 ACTTTTGCGGCATTTTTATAGAAGTGCCGTTAATTCTGATATATTGTGGCATTTTTAGTAAAACG
1 ACTTTTGCGGCATTTCTAAAGAAGTGCCCTTAATTCTGATATATTGTGGCATTTTAAGTAAAACG
82260921 CCACTAATGCCTCTATAGCTACGTCGTAGTTTATCTCAAG
66 CCACTAATGCCTCTATAGCTACGTCGTAGTTTATCTCAAG
*
82260961 ACTTTTGCGGCGTTTCTAAAGAAGTGCCCTTAATTCTGATATATTGTGGCATTTTAAGTAAAACG
1 ACTTTTGCGGCATTTCTAAAGAAGTGCCCTTAATTCTGATATATTGTGGCATTTTAAGTAAAACG
82261026 CCACTAATGCCTCTATAGCT
66 CCACTAATGCCTCTATAGCT
82261046 CATTAACATA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 80 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (105 bp):
ACTTTTGCGGCATTTCTAAAGAAGTGCCCTTAATTCTGATATATTGTGGCATTTTAAGTAAAACG
CCACTAATGCCTCTATAGCTACGTCGTAGTTTATCTCAAG
Found at i:82262397 original size:23 final size:24
Alignment explanation
Indices: 82262365--82262413 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
82262355 TTATTATATT
82262365 TATTATTATTATTTA-ATTAATTAA
1 TATTATTATTA-TTACATTAATTAA
82262389 TATTA-TATTATTACATTAATTAA
1 TATTATTATTATTACATTAATTAA
82262412 TA
1 TA
82262414 AATTAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 3 0.12
23 16 0.67
24 5 0.21
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
TATTATTATTATTACATTAATTAA
Found at i:82262401 original size:18 final size:17
Alignment explanation
Indices: 82262341--82262408 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 17
82262331 TGTATTTGTG
*
82262341 TATTAAATAGATATTTATT
1 TATTAATTA-ATA-TTATT
* *
82262360 ATATTTATTATTATTATT
1 -TATTAATTAATATTATT
82262378 TAATTAATTAATATTATAT
1 T-ATTAATTAATATTAT-T
82262397 TATTACATTAAT
1 TATTA-ATTAAT
82262409 TAATAAATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.03
18 22 0.55
19 10 0.25
20 7 0.17
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (17 bp):
TATTAATTAATATTATT
Found at i:82262418 original size:31 final size:33
Alignment explanation
Indices: 82262356--82262421 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 33
82262346 AATAGATATT
* * *
82262356 TATTATATTTATTATTATTATTTAATTAATTAA
1 TATTATATTTATTATCATTAATTAATAAATTAA
82262389 TATTATA-TTATTA-CATTAATTAATAAATTAA
1 TATTATATTTATTATCATTAATTAATAAATTAA
82262420 TA
1 TA
82262422 AATTGACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 17 0.57
32 6 0.20
33 7 0.23
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (33 bp):
TATTATATTTATTATCATTAATTAATAAATTAA
Found at i:82263889 original size:26 final size:26
Alignment explanation
Indices: 82263847--82263930 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
82263837 TGATACAAAT
* *
82263847 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
82263873 TGGTAATGGGTTTGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
82263899 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
82263925 TGATAA
1 TGATAA
82263931 GAATTTCATG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:82269032 original size:45 final size:44
Alignment explanation
Indices: 82268735--82269125 Score: 145
Period size: 44 Copynumber: 8.7 Consensus size: 44
82268725 TAGCTTCAAT
* *
82268735 CTGCTCCACTGCAACTTCAGGGAAATAAGATTTGATATCTTCAGGC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TATCTTCA-GC
** * *
82268781 C-GCTTTACTGTAACTTCAGAGAGATAAGACTTGTAAT-TTC-GAC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT-ATCTTCAG-C
* * * * * * * ** **
82268824 CTGCCCCAATACAACTTCAGGGGGGTAAGGTTTGTGGCTTCAAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTATCTTCAGC
* * * * * *
82268868 CTACTCCACTACAACTTCAGGGAGATAAGATCCAACATGGTAGAT-TTGATC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGAT------TTGT--ATCTTCAGC
* * * * **
82268919 C-GAC-CTACTGCAACTTCAGAG-GTATAGGATTTGTAGCTTTAAT
1 CTG-CTCCACTGCAACTTCAGAGAG-ATAAGATTTGTATCTTCAGC
* * *
82268962 CTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGG
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TATCTTCAGC
* * *
82269007 CTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAAT-TTC-GAC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT-ATCTTCAG-C
* * * ** **
82269051 CTGC-CCTACTGTAACTTCAGGGGGATAAGATTTGTGGCTTCAAT
1 CTGCTCC-ACTGCAACTTCAGAGAGATAAGATTTGTATCTTCAGC
* * *
82269095 CTACTCCACTACAACTTTAGAGAGATAAGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGAT
82269126 GGTGGCTTAA
Statistics
Matches: 250, Mismatches: 69, Indels: 54
0.67 0.18 0.14
Matches are distributed among these distances:
42 2 0.01
43 10 0.04
44 140 0.56
45 68 0.27
46 1 0.00
49 1 0.00
50 23 0.09
51 5 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTATCTTCAGC
Found at i:82269154 original size:43 final size:44
Alignment explanation
Indices: 82268923--82269169 Score: 124
Period size: 44 Copynumber: 5.6 Consensus size: 44
82268913 TTGATCCGAC
* * * * * *
82268923 CTACTGCAACTTCAGAG-GTATAGGATTTGTAGCTTTAATCTACT
1 CTACTGTAACTTCAGAGAG-ATAAGATTGGTGGCTTAAATCTGCT
* * ** * **
82268967 CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGGCTGCT
1 CTACTGTAACTTCAGAGAGATAAGA-TTGGTGGCTTAAATCTGCT
* * * * *** ** * *
82269012 CCACTGCAACTTTAGGGAGATAAGACTT-GTAATTTCGACCTGCC
1 CTACTGTAACTTCAGAGAGATAAGA-TTGGTGGCTTAAATCTGCT
* * * * *
82269056 CTACTGTAACTTCAGGGGGATAAGATTTGTGGCTTCAATCTACT
1 CTACTGTAACTTCAGAGAGATAAGATTGGTGGCTTAAATCTGCT
* ** *
82269100 CCACTACAACTTTAGAGAGATAAGA-TGGTGGCTTAAATCTGCT
1 CTACTGTAACTTCAGAGAGATAAGATTGGTGGCTTAAATCTGCT
*
82269143 CTACTGTAACTTCA-AGGAGACAAGATT
1 CTACTGTAACTTCAGA-GAGATAAGATT
82269170 CACCGTCTTT
Statistics
Matches: 154, Mismatches: 44, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
42 1 0.01
43 35 0.23
44 81 0.53
45 37 0.24
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (44 bp):
CTACTGTAACTTCAGAGAGATAAGATTGGTGGCTTAAATCTGCT
Found at i:82269253 original size:133 final size:132
Alignment explanation
Indices: 82269095--82269386 Score: 413
Period size: 133 Copynumber: 2.2 Consensus size: 132
82269085 TGGCTTCAAT
* * *
82269095 CTACTCCACTACAACTTTAGAGAGATAAGATGGTGGCTTAAATCTGCTCTACTGTAACTTCAAGG
1 CTACTCCACTACAAC-TTAGGGAGATAAGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAAGG
* * * * * * *
82269160 AGACAAGATTCACCGTCTTTGATTTGCTCCACTGCAACTTCGGGGAGACAAGATCTACAATCTTT
65 AGACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAAT-ATG
82269225 TAAC
129 TAAC
* *
82269229 CTACTCCACTACAACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAGGGA
1 CTACTCCACTACAACTTAGGGAGATAAGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAAGGA
**
82269294 GACAAGATTTGCCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATATGTA
66 GACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATATGTA
*
82269359 GC
131 AC
* *
82269361 GTACTCCACTACAACTTAGGAAGATA
1 CTACTCCACTACAACTTAGGGAGATA
82269387 GGGCTTGTGA
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
132 28 0.20
133 98 0.70
134 15 0.11
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (132 bp):
CTACTCCACTACAACTTAGGGAGATAAGATGGTGGCTTAAATCTGCTCCACTGCAACTTCAAGGA
GACAAGATTCACCGTCTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGATCTACAATATGTA
AC
Found at i:82269325 original size:45 final size:44
Alignment explanation
Indices: 82268728--82269346 Score: 218
Period size: 45 Copynumber: 13.9 Consensus size: 44
82268718 TAATTTATAG
* **
82268728 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGATAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CGT
** * ** * * * **
82268773 CTTCAGGCCGCTTTACTGTAACTTCAGAGAGATAAGACTTGTAAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CGT
* * * * * * * * * *
82268818 -TTCGACCTGCCCCAATACAACTTCAGGGGGGTAAGGTTTGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCGT
* * *
82268861 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCCAACATG-GT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-----TTGCGT
* ** * * * * *
82268909 AGATTTGATCCGAC-CTACTGCAACTTCAGAGG-TATAGGATTTGTAG-
1 --CTTCAATCTG-CTCCACTGCAACTTCAG-GGAGATAAGATTTG-CGT
* * * * *
82268955 CTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGC-GT
** * * **
82269000 CTTCAGGCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CGT
* * * * * *
82269045 -TTCGACCTGC-CCTACTGTAACTTCAGGGGGATAAGATTTGTGG
1 CTTCAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGATTTGCGT
* * * * *
82269088 CTTCAATCTACTCCACTACAACTTTAGAGAGATAAGATGGTG-G-
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TTGCGT
* * * * * **
82269131 CTTAAATCTGCTCTACTGTAACTTCAAGGAGACAAGATTCACCGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCGT
** * * * * * *
82269176 CTTTGATTTGCTCCACTGCAACTTCGGGGAGACAAGATCTACAAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGC-GT
* * * * * *
82269221 CTTTTAACCTACTCCACTACAACTT-AGGGAGATAGGATGGTG-G-
1 C-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TTGCGT
* *
82269264 CTTAAATCTGCTCCACTGCAACTTCAGGGAGACAAGATTTGCCGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CGT
* * * *
82269309 CTTCGATCTACTCCACTGCAACTTCAGAGAGACAAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
82269347 CTACAATATG
Statistics
Matches: 412, Mismatches: 131, Indels: 62
0.68 0.22 0.10
Matches are distributed among these distances:
42 21 0.05
43 45 0.11
44 144 0.35
45 152 0.37
46 19 0.05
47 1 0.00
48 1 0.00
49 2 0.00
50 24 0.06
51 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCGT
Done.