Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 253 of 320
Found at i:82489805 original size:23 final size:23
Alignment explanation
Indices: 82489775--82489824 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
82489765 TGAGTGGCTA
82489775 GTGGAGTTGGTGGTGGAAAAGGT
1 GTGGAGTTGGTGGTGGAAAAGGT
82489798 GTGGAGTTGGTGGTGGAAAAGGT
1 GTGGAGTTGGTGGTGGAAAAGGT
82489821 GTGG
1 GTGG
82489825 CTAGTGGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.20, C:0.00, G:0.54, T:0.26
Consensus pattern (23 bp):
GTGGAGTTGGTGGTGGAAAAGGT
Found at i:82490139 original size:40 final size:37
Alignment explanation
Indices: 82490095--82490169 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 37
82490085 TTAATATATA
82490095 TTTTAACACATATCATTACTTAT-TATTTATTATATTATGT
1 TTTTAACACATA--A-TACTTATATATTT-TTATATTATGT
* *
82490135 TTTTATCACATAATATTTATATATTTTTATATTAT
1 TTTTAACACATAATACTTATATATTTTTATATTAT
82490170 TATATTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 15 0.47
38 6 0.19
40 11 0.34
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTTAACACATAATACTTATATATTTTTATATTATGT
Found at i:82501959 original size:27 final size:26
Alignment explanation
Indices: 82501922--82501986 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
82501912 GGGCGCAACA
*
82501922 ACTTATATTTTAT-TATTATTATATTT
1 ACTTATATTTT-TCTATTATCATATTT
82501948 ACTTCATATTTTTCTATTATCATA-TT
1 ACTT-ATATTTTTCTATTATCATATTT
*
82501974 AATATATATTTTT
1 ACT-TATATTTTT
82501987 AACACATATC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 17 0.50
27 17 0.50
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (26 bp):
ACTTATATTTTTCTATTATCATATTT
Found at i:82502043 original size:19 final size:19
Alignment explanation
Indices: 82502012--82502054 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
82502002 TTATATTTAT
*
82502012 TATA-TTATGTTTTTATAC
1 TATATTTATATTTTTATAC
*
82502030 TATATTTATATTTTTATAT
1 TATATTTATATTTTTATAC
82502049 TATATT
1 TATATT
82502055 ATTTACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TATATTTATATTTTTATAC
Found at i:82504434 original size:17 final size:17
Alignment explanation
Indices: 82504406--82504449 Score: 79
Period size: 17 Copynumber: 2.5 Consensus size: 17
82504396 ATTATACTAG
82504406 AGATATTCTAGTATAATT
1 AGATA-TCTAGTATAATT
82504424 AGATATCTAGTATAATT
1 AGATATCTAGTATAATT
82504441 AGATATCTA
1 AGATATCTA
82504450 ATCTCAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (17 bp):
AGATATCTAGTATAATT
Found at i:82507834 original size:16 final size:16
Alignment explanation
Indices: 82507812--82507880 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
82507802 TTTGGTTCGC
82507812 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
82507828 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
82507844 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
82507861 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
82507877 TGTA
1 TGTA
82507881 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:82507858 original size:33 final size:32
Alignment explanation
Indices: 82507812--82507880 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
82507802 TTTGGTTCGC
82507812 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
82507844 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
82507877 TGTA
1 TGTA
82507881 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:82507945 original size:44 final size:45
Alignment explanation
Indices: 82507861--82507951 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
82507851 GGATTAGAGG
* * *
82507861 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
82507906 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
82507950 TG
1 TG
82507952 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:82508135 original size:18 final size:17
Alignment explanation
Indices: 82508114--82508148 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82508104 TTATTATTAA
*
82508114 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
82508132 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
82508149 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:82508310 original size:120 final size:120
Alignment explanation
Indices: 82508097--82508840 Score: 1323
Period size: 120 Copynumber: 6.2 Consensus size: 120
82508087 ATCATATTTA
82508097 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
82508162 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
82508217 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
82508281 AATATTCTTATATTAA-TTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
82508337 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGAA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
82508401 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
82508458 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
82508523 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
82508578 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
82508643 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
82508698 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
82508763 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
82508818 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
82508841 AACTTGAAAA
Statistics
Matches: 609, Mismatches: 11, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
119 2 0.00
120 493 0.81
121 113 0.19
122 1 0.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:82508368 original size:30 final size:30
Alignment explanation
Indices: 82508333--82508489 Score: 78
Period size: 30 Copynumber: 5.2 Consensus size: 30
82508323 GTAAAATATA
82508333 AATTAACATAATTATTATTAAATATATTTT
1 AATTAACATAATTATTATTAAATATATTTT
* * * *
82508363 AATTAAAAT-A-TATAATTTAATGAAATTCTT
1 AATTAACATAATTATTATTAAAT-ATATT-TT
* * * *
82508393 AATTGA-ATAA-TATTCTTATAT-TAATTT
1 AATTAACATAATTATTATTAAATATATTTT
* * *
82508420 ACTGAAATCATAATATATGATACTGTAAA-ATA--TA
1 AAT-TAA-CATAAT-TAT--TA-T-TAAATATATTTT
82508454 AATTAACATAATTATTATTAAATATATTTT
1 AATTAACATAATTATTATTAAATATATTTT
82508484 AATTAA
1 AATTAA
82508490 ACTATATAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 32
0.64 0.14 0.22
Matches are distributed among these distances:
27 8 0.09
28 16 0.18
29 9 0.10
30 34 0.37
31 3 0.03
32 9 0.10
33 2 0.02
34 4 0.04
35 1 0.01
36 5 0.05
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (30 bp):
AATTAACATAATTATTATTAAATATATTTT
Found at i:82511895 original size:33 final size:33
Alignment explanation
Indices: 82511856--82511965 Score: 127
Period size: 33 Copynumber: 3.3 Consensus size: 33
82511846 ATTATAAAGC
82511856 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
82511889 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* * *
82511922 AATGT-T-ATTGTCCCTAAAA-AACATTGCTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
82511955 ATGTATAATTG
1 ATGTATAATTG
82511966 TTGGTTTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.14
33 48 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:82511972 original size:51 final size:51
Alignment explanation
Indices: 82511912--82512131 Score: 262
Period size: 51 Copynumber: 4.0 Consensus size: 51
82511902 CTAAAATTAC
82511912 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGCTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGCTGGTGTATGTATAA
*
82511963 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGCTGGTGTATGTATAA
*
82512014 TTGTTGGTTGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATA
1 TTGTTGG-T-T-TAA----T-G-------TTATTTACCCTAAAAAACATTGCTGGTGTATGTATA
82512079 A
51 A
*
82512080 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGCTGGTGTATGTATAA
82512131 T
1 T
82512132 CTTTTAATTT
Statistics
Matches: 152, Mismatches: 1, Indels: 32
0.82 0.01 0.17
Matches are distributed among these distances:
50 1 0.01
51 93 0.61
52 1 0.01
53 1 0.01
54 3 0.02
58 2 0.01
59 2 0.01
63 3 0.02
64 1 0.01
65 1 0.01
66 44 0.29
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGCTGGTGTATGTATAA
Found at i:82511999 original size:33 final size:33
Alignment explanation
Indices: 82511962--82512069 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 33
82511952 TGTATGTATA
82511962 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
1 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
* *** *** *
82511995 ATTGTTGGTGT-ATGTATAATTGT-TGGTTGTATA-
1 ATTGTTGGTTTAATGT-T-ATT-TACCCTAAAAAAC
82512028 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
1 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
82512061 ATTGTTGGT
1 ATTGTTGGT
82512070 GTATGTATAA
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
31 1 0.02
32 10 0.19
33 31 0.58
34 10 0.19
35 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (33 bp):
ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
Found at i:82512013 original size:117 final size:117
Alignment explanation
Indices: 82511878--82512131 Score: 404
Period size: 117 Copynumber: 2.2 Consensus size: 117
82511868 CCTAAAATTA
*
82511878 ATTGTTGGTGTATGTATAATTG-ACCTAAAATTACTTGTTGGTTTAATGTTATTGT-CCCTAAAA
1 ATTGTTGGTGTATGTATAATTGTACCTAAAA-TAATTGTTGGTTTAATGTTATT-TACCCTAAAA
82511941 AACATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
64 AACATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
*** ***
82511995 ATTGTTGGTGTATGTATAATTGTTGGTTGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAA
1 ATTGTTGGTGTATGTATAATTGTACCTAAAATAATTGTTGGTTTAATGTTATTTACCCTAAAAAA
*
82512060 CATTGTTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
66 CATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
82512112 ATTGTTGGTGTATGTATAAT
1 ATTGTTGGTGTATGTATAAT
82512132 CTTTTAATTT
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
116 1 0.01
117 124 0.98
118 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.45
Consensus pattern (117 bp):
ATTGTTGGTGTATGTATAATTGTACCTAAAATAATTGTTGGTTTAATGTTATTTACCCTAAAAAA
CATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
Found at i:82512018 original size:18 final size:17
Alignment explanation
Indices: 82511995--82512036 Score: 61
Period size: 15 Copynumber: 2.5 Consensus size: 17
82511985 CCTAAAAAAC
82511995 ATTGTTGGTGTATGTATA
1 ATTGTTGGTGT-TGTATA
82512013 ATTGTT-G-GTTGTATA
1 ATTGTTGGTGTTGTATA
82512028 ATTGTTGGT
1 ATTGTTGGT
82512037 TTAATGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.55
16 3 0.14
17 1 0.05
18 6 0.27
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (17 bp):
ATTGTTGGTGTTGTATA
Found at i:82512026 original size:66 final size:66
Alignment explanation
Indices: 82511956--82512088 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
82511946 TGCTGGTGTA
82511956 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
1 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
82512021 T
66 T
82512022 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
1 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
82512087 T
66 T
82512088 T
1 T
82512089 TAATGTTATT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.27, C:0.06, G:0.20, T:0.47
Consensus pattern (66 bp):
TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
T
Found at i:82512027 original size:15 final size:15
Alignment explanation
Indices: 82512007--82512037 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82511997 TGTTGGTGTA
82512007 TGTATAATTGTTGGT
1 TGTATAATTGTTGGT
82512022 TGTATAATTGTTGGT
1 TGTATAATTGTTGGT
82512037 T
1 T
82512038 TAATGTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
TGTATAATTGTTGGT
Found at i:82512308 original size:85 final size:86
Alignment explanation
Indices: 82512206--82512385 Score: 346
Period size: 85 Copynumber: 2.1 Consensus size: 86
82512196 TTCTCTCCAC
82512206 ATAA-AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
82512270 TTAATATTAAAGAT-AAAATT
66 TTAATATTAAAGATAAAAATT
82512290 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
82512355 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
82512376 ATAATAATTA
1 ATAATAATTA
82512386 CAATTATATT
Statistics
Matches: 94, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
84 4 0.04
85 74 0.79
86 16 0.17
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (86 bp):
ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
TTAATATTAAAGATAAAAATT
Found at i:82523173 original size:26 final size:26
Alignment explanation
Indices: 82523119--82523190 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 26
82523109 AGAATAAAGC
*
82523119 AAAACAAAATCATAAAAAAGATAAGAT
1 AAAACAAAAT-AAAAAAAAGATAAGAT
82523146 AAAACAAACATAAAAAAAACGA-AA-AT
1 AAAACAAA-ATAAAAAAAA-GATAAGAT
82523172 AAATA-AAAATTAAAAAAAA
1 AAA-ACAAAA-TAAAAAAAA
82523191 TAATCTAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
25 1 0.03
26 17 0.43
27 18 0.45
28 4 0.10
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.12
Consensus pattern (26 bp):
AAAACAAAATAAAAAAAAGATAAGAT
Found at i:82526945 original size:1 final size:1
Alignment explanation
Indices: 82526939--82526972 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
82526929 AAATGAACCG
82526939 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82526973 CCCCATCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:82539127 original size:22 final size:22
Alignment explanation
Indices: 82539049--82539131 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
82539039 TACATATATA
* *
82539049 AAAATAAATACATGATAATA-TT
1 AAAATATATACATAAT-ATAGTT
* *
82539071 AAAATATGTATATAATATAGTGTT
1 AAAATATATACATAATATA--GTT
*
82539095 AAAATACATACATAATATAGTT
1 AAAATATATACATAATATAGTT
*
82539117 AAGATATATACATAA
1 AAAATATATACATAA
82539132 GATAACATGT
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
21 3 0.06
22 28 0.57
24 18 0.37
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (22 bp):
AAAATATATACATAATATAGTT
Found at i:82539201 original size:51 final size:47
Alignment explanation
Indices: 82539146--82539285 Score: 128
Period size: 51 Copynumber: 2.9 Consensus size: 47
82539136 ACATGTAGAA
82539146 AAAATATATATATAAATAATATAATATTAAAGATATATAAATAA-ATAGTAT
1 AAAATATATATAT-AATAATATAATATT-AAGA-ATATAAATAATATA-T-T
* * **
82539197 AAAATATATATATACGTAATATAAAATTTAA-AATATACCTAATATATT
1 AAAATATATATATA-ATAATATAATA-TTAAGAATATAAATAATATATT
*
82539245 AAAAGA-ATATAT-ATAATATAATATTAAGAA-ATATAATAATA
1 AAAATATATATATAATAATATAATATTAAGAATATA-AATAATA
82539286 ACAAAAAAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 7 0.09
45 16 0.21
47 6 0.08
48 6 0.08
49 9 0.12
50 5 0.07
51 24 0.32
52 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (47 bp):
AAAATATATATATAATAATATAATATTAAGAATATAAATAATATATT
Found at i:82539219 original size:22 final size:22
Alignment explanation
Indices: 82539166--82539242 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
82539156 TATAAATAAT
* *
82539166 ATAATATTAAAGATATATAAATAA
1 ATAATA-TAAA-ATATATATATAC
*
82539190 ATAGTATAAAATATATATATAC
1 ATAATATAAAATATATATATAC
* * *
82539212 GTAATATAAAATTTAAAATATAC
1 ATAATATAAAATAT-ATATATAC
*
82539235 CTAATATA
1 ATAATATA
82539243 TTAAAAGAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 21 0.48
23 18 0.41
24 5 0.11
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
ATAATATAAAATATATATATAC
Found at i:82539285 original size:45 final size:48
Alignment explanation
Indices: 82539153--82539285 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 48
82539143 GAAAAAATAT
* * *
82539153 ATATATAAATAATATAATATTAAAGATATATAAATAA-ATAGTATAAAAT
1 ATATATATATAATATAATATT-AAGAAATAT-AATAATATAGTATAAAAG
* * *
82539202 ATATATATACGTAATATAAAATTTA-AAATATACCTAATATA-T-TAAAAG
1 ATATATATA--TAATATAATATTAAGAAATATA-ATAATATAGTATAAAAG
82539250 A-ATATATATAATATAATATTAAGAAATATAATAATA
1 ATATATATATAATATAATATTAAGAAATATAATAATA
82539286 ACAAAAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
45 17 0.24
46 7 0.10
47 7 0.10
48 7 0.10
49 17 0.24
50 4 0.06
51 11 0.16
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (48 bp):
ATATATATATAATATAATATTAAGAAATATAATAATATAGTATAAAAG
Found at i:82539804 original size:30 final size:30
Alignment explanation
Indices: 82539763--82539891 Score: 127
Period size: 30 Copynumber: 4.3 Consensus size: 30
82539753 AGGTACAAGT
* *
82539763 GGTAGTGGAGCAACTGTGGTTAGTGGAGTA
1 GGTAGTGGAGCAAGTGTGGCTAGTGGAGTA
* * *
82539793 GGTAATGGAGCAAGTGTGGCTAGTGGATTT
1 GGTAGTGGAGCAAGTGTGGCTAGTGGAGTA
*
82539823 GGTAGTGGAG-AATGTGTGGCTAGTGGAGTT
1 GGTAGTGGAGCAA-GTGTGGCTAGTGGAGTA
* * * *
82539853 GGTGGTGGA-AAATGAGTGGCTAGTGGAGTT
1 GGTAGTGGAGCAA-GTGTGGCTAGTGGAGTA
*
82539883 GGTGGTGGA
1 GGTAGTGGA
82539892 AAAGGTGTGG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
29 2 0.02
30 86 0.98
ACGTcount: A:0.22, C:0.05, G:0.46, T:0.28
Consensus pattern (30 bp):
GGTAGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:82539892 original size:30 final size:30
Alignment explanation
Indices: 82539806--82539959 Score: 205
Period size: 30 Copynumber: 5.4 Consensus size: 30
82539796 AATGGAGCAA
* * * *
82539806 GTGTGGCTAGTGGATTTGGTAGTGGAGAAT
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
82539836 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAT
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
82539866 GAGTGGCTAGTGGAGTTGGTGGTGGAAAA-
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
82539895 ----GG-T-GTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
82539919 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
82539949 GTGTGGCTAGT
1 GTGTGGCTAGT
82539960 TGAGAAAAGT
Statistics
Matches: 113, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
23 20 0.18
24 1 0.01
25 2 0.02
28 2 0.02
29 1 0.01
30 87 0.77
ACGTcount: A:0.20, C:0.03, G:0.48, T:0.29
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:82539902 original size:53 final size:53
Alignment explanation
Indices: 82539845--82539954 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
82539835 TGTGTGGCTA
*
82539845 GTGGAGTTGGTGGTGGAAAATGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
1 GTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
*
82539898 GTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
1 GTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
82539951 GTGG
1 GTGG
82539955 CTAGTTGAGA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.21, C:0.02, G:0.51, T:0.26
Consensus pattern (53 bp):
GTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
Found at i:82539905 original size:23 final size:23
Alignment explanation
Indices: 82539875--82539924 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
82539865 TGAGTGGCTA
82539875 GTGGAGTTGGTGGTGGAAAAGGT
1 GTGGAGTTGGTGGTGGAAAAGGT
82539898 GTGGAGTTGGTGGTGGAAAAGGT
1 GTGGAGTTGGTGGTGGAAAAGGT
82539921 GTGG
1 GTGG
82539925 CTAGTGGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.20, C:0.00, G:0.54, T:0.26
Consensus pattern (23 bp):
GTGGAGTTGGTGGTGGAAAAGGT
Found at i:82540239 original size:40 final size:37
Alignment explanation
Indices: 82540195--82540269 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 37
82540185 TTAATATATA
82540195 TTTTAACACATATCATTACTTAT-TATTTATTATATTATGT
1 TTTTAACACATA--A-TACTTATATATTT-TTATATTATGT
* *
82540235 TTTTATCACATAATATTTATATATTTTTATATTAT
1 TTTTAACACATAATACTTATATATTTTTATATTAT
82540270 TATATTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 15 0.47
38 6 0.19
40 11 0.34
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTTAACACATAATACTTATATATTTTTATATTATGT
Found at i:82542688 original size:17 final size:17
Alignment explanation
Indices: 82542660--82542703 Score: 79
Period size: 17 Copynumber: 2.5 Consensus size: 17
82542650 ATTATACTAG
82542660 AGATATTCTAGTATAATT
1 AGATA-TCTAGTATAATT
82542678 AGATATCTAGTATAATT
1 AGATATCTAGTATAATT
82542695 AGATATCTA
1 AGATATCTA
82542704 ATCTCAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (17 bp):
AGATATCTAGTATAATT
Found at i:82546109 original size:16 final size:16
Alignment explanation
Indices: 82546087--82546155 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
82546077 TTTGGTTCGC
82546087 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
82546103 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
82546119 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
82546136 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
82546152 TGTA
1 TGTA
82546156 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:82546133 original size:33 final size:32
Alignment explanation
Indices: 82546087--82546155 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
82546077 TTTGGTTCGC
82546087 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
82546119 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
82546152 TGTA
1 TGTA
82546156 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:82546220 original size:44 final size:45
Alignment explanation
Indices: 82546136--82546226 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
82546126 GGATTAGAGG
* * *
82546136 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
82546181 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
82546225 TG
1 TG
82546227 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:82546412 original size:18 final size:17
Alignment explanation
Indices: 82546391--82546425 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82546381 TTATTATTAA
*
82546391 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
82546409 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
82546426 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:82546645 original size:30 final size:30
Alignment explanation
Indices: 82546610--82546766 Score: 78
Period size: 30 Copynumber: 5.2 Consensus size: 30
82546600 GTAAAATATA
82546610 AATTAACATAATTATTATTAAATATATTTT
1 AATTAACATAATTATTATTAAATATATTTT
* * * *
82546640 AATTAAAAT-A-TATAATTTAATGAAATTCTT
1 AATTAACATAATTATTATTAAAT-ATATT-TT
* * * *
82546670 AATTGA-ATAA-TATTCTTATAT-TAATTT
1 AATTAACATAATTATTATTAAATATATTTT
* * *
82546697 ACTGAAATCATAATATATGATACTGTAAA-ATA--TA
1 AAT-TAA-CATAAT-TAT--TA-T-TAAATATATTTT
82546731 AATTAACATAATTATTATTAAATATATTTT
1 AATTAACATAATTATTATTAAATATATTTT
82546761 AATTAA
1 AATTAA
82546767 ACTATATAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 32
0.64 0.14 0.22
Matches are distributed among these distances:
27 8 0.09
28 16 0.18
29 9 0.10
30 34 0.37
31 3 0.03
32 9 0.10
33 2 0.02
34 4 0.04
35 1 0.01
36 5 0.05
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (30 bp):
AATTAACATAATTATTATTAAATATATTTT
Found at i:82546651 original size:119 final size:120
Alignment explanation
Indices: 82546374--82547115 Score: 1323
Period size: 119 Copynumber: 6.2 Consensus size: 120
82546364 ATCATATTTA
82546374 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
82546439 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGT-AAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
82546493 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
82546557 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
82546614 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGAA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
82546678 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
82546735 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
82546799 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
82546854 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
82546919 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
82546974 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
82547038 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
82547093 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
82547116 AACTTGAAAA
Statistics
Matches: 610, Mismatches: 8, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
118 2 0.00
119 256 0.42
120 175 0.29
121 177 0.29
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:82546982 original size:239 final size:239
Alignment explanation
Indices: 82546374--82547115 Score: 1355
Period size: 239 Copynumber: 3.1 Consensus size: 239
82546364 ATCATATTTA
*
82546374 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
82546439 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGT-AAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
* * *
82546503 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-TAATATTCTTA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAA-T-AATTAATATTCTTA
*
82546567 TATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
193 TATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
82546614 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGAA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAA-T-AATT
82546678 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAAT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAAT
82546743 TATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTAT
129 TATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTAT
82546808 ATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
194 ATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
82546854 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
*
82546919 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
82546984 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTATAT
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTATAT
82547049 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
196 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
82547093 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
82547116 AACTTGAAAA
Statistics
Matches: 490, Mismatches: 7, Indels: 11
0.96 0.01 0.02
Matches are distributed among these distances:
238 2 0.00
239 201 0.41
240 172 0.35
241 57 0.12
242 58 0.12
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (239 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTATAT
TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:82550171 original size:33 final size:33
Alignment explanation
Indices: 82550132--82550241 Score: 127
Period size: 33 Copynumber: 3.3 Consensus size: 33
82550122 ATTATAAAGC
82550132 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
82550165 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* * *
82550198 AATGT-T-ATTGTCCCTAAAA-AACATTGCTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
82550231 ATGTATAATTG
1 ATGTATAATTG
82550242 TTGGTTTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.14
33 48 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:82550248 original size:51 final size:51
Alignment explanation
Indices: 82550188--82550407 Score: 262
Period size: 51 Copynumber: 4.0 Consensus size: 51
82550178 CTAAAATTAC
82550188 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGCTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGCTGGTGTATGTATAA
*
82550239 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGCTGGTGTATGTATAA
*
82550290 TTGTTGGTTGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATA
1 TTGTTGG-T-T-TAA----T-G-------TTATTTACCCTAAAAAACATTGCTGGTGTATGTATA
82550355 A
51 A
*
82550356 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGCTGGTGTATGTATAA
82550407 T
1 T
82550408 CTTTTAATTT
Statistics
Matches: 152, Mismatches: 1, Indels: 32
0.82 0.01 0.17
Matches are distributed among these distances:
50 1 0.01
51 93 0.61
52 1 0.01
53 1 0.01
54 3 0.02
58 2 0.01
59 2 0.01
63 3 0.02
64 1 0.01
65 1 0.01
66 44 0.29
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGCTGGTGTATGTATAA
Found at i:82550275 original size:33 final size:33
Alignment explanation
Indices: 82550238--82550345 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 33
82550228 TGTATGTATA
82550238 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
1 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
* *** *** *
82550271 ATTGTTGGTGT-ATGTATAATTGT-TGGTTGTATA-
1 ATTGTTGGTTTAATGT-T-ATT-TACCCTAAAAAAC
82550304 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
1 ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
82550337 ATTGTTGGT
1 ATTGTTGGT
82550346 GTATGTATAA
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
31 1 0.02
32 10 0.19
33 31 0.58
34 10 0.19
35 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (33 bp):
ATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
Found at i:82550289 original size:117 final size:117
Alignment explanation
Indices: 82550154--82550407 Score: 404
Period size: 117 Copynumber: 2.2 Consensus size: 117
82550144 CCTAAAATTA
*
82550154 ATTGTTGGTGTATGTATAATTG-ACCTAAAATTACTTGTTGGTTTAATGTTATTGT-CCCTAAAA
1 ATTGTTGGTGTATGTATAATTGTACCTAAAA-TAATTGTTGGTTTAATGTTATT-TACCCTAAAA
82550217 AACATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
64 AACATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
*** ***
82550271 ATTGTTGGTGTATGTATAATTGTTGGTTGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAA
1 ATTGTTGGTGTATGTATAATTGTACCTAAAATAATTGTTGGTTTAATGTTATTTACCCTAAAAAA
*
82550336 CATTGTTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
66 CATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
82550388 ATTGTTGGTGTATGTATAAT
1 ATTGTTGGTGTATGTATAAT
82550408 CTTTTAATTT
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
116 1 0.01
117 124 0.98
118 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.45
Consensus pattern (117 bp):
ATTGTTGGTGTATGTATAATTGTACCTAAAATAATTGTTGGTTTAATGTTATTTACCCTAAAAAA
CATTGCTGGTGTATGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAAC
Found at i:82550294 original size:18 final size:17
Alignment explanation
Indices: 82550271--82550312 Score: 61
Period size: 15 Copynumber: 2.5 Consensus size: 17
82550261 CCTAAAAAAC
82550271 ATTGTTGGTGTATGTATA
1 ATTGTTGGTGT-TGTATA
82550289 ATTGTT-G-GTTGTATA
1 ATTGTTGGTGTTGTATA
82550304 ATTGTTGGT
1 ATTGTTGGT
82550313 TTAATGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.55
16 3 0.14
17 1 0.05
18 6 0.27
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (17 bp):
ATTGTTGGTGTTGTATA
Found at i:82550302 original size:66 final size:66
Alignment explanation
Indices: 82550232--82550364 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
82550222 TGCTGGTGTA
82550232 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
1 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
82550297 T
66 T
82550298 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
1 TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
82550363 T
66 T
82550364 T
1 T
82550365 TAATGTTATT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.27, C:0.06, G:0.20, T:0.47
Consensus pattern (66 bp):
TGTATAATTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAATTGTTGG
T
Found at i:82550303 original size:15 final size:15
Alignment explanation
Indices: 82550283--82550313 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82550273 TGTTGGTGTA
82550283 TGTATAATTGTTGGT
1 TGTATAATTGTTGGT
82550298 TGTATAATTGTTGGT
1 TGTATAATTGTTGGT
82550313 T
1 T
82550314 TAATGTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
TGTATAATTGTTGGT
Found at i:82550584 original size:86 final size:86
Alignment explanation
Indices: 82550485--82550661 Score: 354
Period size: 86 Copynumber: 2.1 Consensus size: 86
82550475 TCTCCACATA
82550485 AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTATTAAT
1 AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTATTAAT
82550550 ATTAAAGATAAAAATTATAAT
66 ATTAAAGATAAAAATTATAAT
82550571 AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTATTAAT
1 AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTATTAAT
82550636 ATTAAAGATAAAAATTATAAT
66 ATTAAAGATAAAAATTATAAT
82550657 AATTA
1 AATTA
82550662 CAATTATATT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.41
Consensus pattern (86 bp):
AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTATTAAT
ATTAAAGATAAAAATTATAAT
Found at i:82558951 original size:14 final size:14
Alignment explanation
Indices: 82558932--82558962 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
82558922 TGCTACCATT
82558932 TTACTATTATGTTG
1 TTACTATTATGTTG
*
82558946 TTACTATTTTGTTG
1 TTACTATTATGTTG
82558960 TTA
1 TTA
82558963 TTGCTTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:82572134 original size:15 final size:15
Alignment explanation
Indices: 82572104--82572150 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
82572094 ATAATTAGGC
82572104 TAATAATTTAAT-AAA
1 TAATAA-TTAATAAAA
82572119 TAATAATTAATAAAA
1 TAATAATTAATAAAA
*
82572134 TAA-AA-TATTAAAA
1 TAATAATTAATAAAA
82572147 TAAT
1 TAAT
82572151 TAGAATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 10 0.34
14 7 0.24
15 12 0.41
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
TAATAATTAATAAAA
Found at i:82575249 original size:31 final size:31
Alignment explanation
Indices: 82575211--82575274 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
82575201 CCTTTTCATA
82575211 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
82575242 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
82575273 TT
1 TT
82575275 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:82575543 original size:23 final size:23
Alignment explanation
Indices: 82575489--82575580 Score: 141
Period size: 23 Copynumber: 4.0 Consensus size: 23
82575479 CCTAGCCTCT
82575489 TTTAATAACTGGGGCA-AAGGCCC
1 TTTAATAACTGGGGCATAA-GCCC
82575512 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
82575536 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
82575559 TTTAATAACTGGGGCGTAAGCC
1 TTTAATAACTGGGGCATAAGCC
82575581 ATTTTTCACT
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
23 44 0.67
24 20 0.30
25 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:82575660 original size:20 final size:20
Alignment explanation
Indices: 82575635--82575701 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
82575625 TTATGATTAC
82575635 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82575655 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82575675 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82575695 ACCATGT
1 ATCATGT
82575702 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82575666 original size:11 final size:11
Alignment explanation
Indices: 82575635--82575690 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
82575625 TTATGATTAC
82575635 ATCATGTGCAT
1 ATCATGTGCAT
*
82575646 ATCA--TACAT
1 ATCATGTGCAT
82575655 ATCATGTGCAT
1 ATCATGTGCAT
*
82575666 ATCA--TACAT
1 ATCATGTGCAT
*
82575675 GTCATGTGCAT
1 ATCATGTGCAT
82575686 ATCAT
1 ATCAT
82575691 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:82575770 original size:25 final size:25
Alignment explanation
Indices: 82575738--82575785 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82575728 ATACATAAAC
* * *
82575738 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
82575763 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
82575786 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:82592181 original size:21 final size:20
Alignment explanation
Indices: 82592149--82592193 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
82592139 GCCATTCAGT
*
82592149 CGTGTACAATAATACACGGG
1 CGTGTACAATAACACACGGG
*
82592169 CGTGCTACCATAACACACGGG
1 CGTG-TACAATAACACACGGG
82592190 CGTG
1 CGTG
82592194 GGAGAAGCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.18
Consensus pattern (20 bp):
CGTGTACAATAACACACGGG
Found at i:82594119 original size:5 final size:5
Alignment explanation
Indices: 82594109--82594185 Score: 50
Period size: 6 Copynumber: 14.2 Consensus size: 5
82594099 TGAATCCTCC
*
82594109 TATTT TA-TT T-TTT TATTCT TATTTT TATTTT TCTTT TGATTTT TATTT
1 TATTT TATTT TATTT TATT-T TA-TTT TA-TTT TATTT T-A-TTT TATTT
*
82594157 TCATTT CAATTT TATTAT TATTT TATTT T
1 T-ATTT -TATTT TATT-T TATTT TATTT T
82594186 GAAAGACATA
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
4 6 0.10
5 22 0.37
6 25 0.42
7 6 0.10
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.75
Consensus pattern (5 bp):
TATTT
Found at i:82594152 original size:7 final size:6
Alignment explanation
Indices: 82594118--82594185 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
82594108 CTATTTTATT
* * * * *
82594118 TTTTTA TTCTTA TTTTTA TTTTTC TTTTGA TTTTTA TTTTCA -TTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
82594165 ATTTTA TTATTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTT
82594186 GAAAGACATA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
5 9 0.18
6 40 0.82
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:82595842 original size:6 final size:6
Alignment explanation
Indices: 82595824--82595911 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
82595814 AAGAAACATT
* *
82595824 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
82595873 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
82595912 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:82595869 original size:31 final size:31
Alignment explanation
Indices: 82595833--82595911 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
82595823 TATCAGAACT
* *
82595833 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
82595864 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
82595895 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
82595912 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:82596370 original size:27 final size:27
Alignment explanation
Indices: 82596331--82596634 Score: 475
Period size: 27 Copynumber: 11.3 Consensus size: 27
82596321 TACCTCACAA
*
82596331 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82596358 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82596385 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82596412 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82596439 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
82596465 GGTATTGCGATAATTCTACACTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
82596492 GGTATTTCAATAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82596519 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82596546 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82596573 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82596600 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82596627 GGTATTTC
1 GGTATTTC
82596635 AATATTATAC
Statistics
Matches: 253, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 22 0.09
27 231 0.91
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:82596606 original size:161 final size:162
Alignment explanation
Indices: 82596341--82596632 Score: 532
Period size: 161 Copynumber: 1.8 Consensus size: 162
82596331 GGTATCTCGG
82596341 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
*
82596406 TACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACA-GGGTAT
66 TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTAT
82596470 TGCGATAATTCTACACTATAGGGGTATTTCAA
131 TGCGATAATTCTACACTATAGGGGTATTTCAA
* **
82596502 TAATTCTACCTTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
*
82596567 TACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTAT
66 TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTAT
82596632 T
131 T
82596633 TCAATATTAT
Statistics
Matches: 125, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
161 118 0.94
162 7 0.06
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (162 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTAT
TGCGATAATTCTACACTATAGGGGTATTTCAA
Found at i:82596661 original size:134 final size:134
Alignment explanation
Indices: 82596313--82596638 Score: 499
Period size: 134 Copynumber: 2.4 Consensus size: 134
82596303 GGGGCAAAAT
* * * * *
82596313 GGTAATTTTACCTCACAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
1 GGTAATTCTACCTTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
* ** * *
82596378 CTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTA
66 ATACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTA
82596443 TTTC
131 TTTC
* * * * *
82596447 GGTAATTCTACCCTACAGGGTATTGCGATAATTCTACACTATAGGGGTATTTCAATAATTCTACC
1 GGTAATTCTACCTTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
*
82596512 TTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTA
66 ATACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTA
82596577 TTTC
131 TTTC
82596581 GGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
1 GGTAATTCTACCTTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
82596639 TTATACAAAT
Statistics
Matches: 171, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
134 135 0.79
135 36 0.21
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (134 bp):
GGTAATTCTACCTTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
ATACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTA
TTTC
Found at i:82596675 original size:27 final size:27
Alignment explanation
Indices: 82596623--82596831 Score: 171
Period size: 27 Copynumber: 7.8 Consensus size: 27
82596613 TTCTACCCTA
** *
82596623 CAGGGGTATTTCAAT-ATTATACAAAT
1 CAGGGGTATTTTGATAATTTTACAAAT
* *
82596649 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAT
* *
82596676 CAGGGGTATTTTGGTAATTTTACAAGT
1 CAGGGGTATTTTGATAATTTTACAAAT
*
82596703 CAGGGGTATTTT-AGTAATTTTACAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAT
82596730 CAGGGGTATTTT-AGTAATTTTACAAA-
1 CAGGGGTATTTTGA-TAATTTTACAAAT
* **
82596756 CTAGGGGTATTTTGGTAATTTTACTGAT
1 C-AGGGGTATTTTGATAATTTTACAAAT
* **
82596784 C-GAGGGTATTTTGGTAATTTTGTAAA-
1 CAG-GGGTATTTTGATAATTTTACAAAT
* *
82596810 CTAAGGGTATTTTAATAATTTT
1 C-AGGGGTATTTTGATAATTTT
82596832 GTAAATCGAG
Statistics
Matches: 151, Mismatches: 22, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
25 1 0.01
26 13 0.09
27 135 0.89
28 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAT
Found at i:82596682 original size:161 final size:161
Alignment explanation
Indices: 82596341--82596721 Score: 502
Period size: 161 Copynumber: 2.4 Consensus size: 161
82596331 GGTATCTCGG
** **
82596341 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACAATACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
*
82596406 TACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTATT
66 TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATT
* * * *
82596471 GCGATAATTCTACACTATAGGGGTATTTCAA
131 GCAATAATTATACACAATAGGAGTATTTCAA
**
82596502 TAATTCTACCTTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACAATACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
*
82596567 TACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTAT
66 TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTAT
* * **
82596632 TTCAAT-ATTATACA-AATCGAGAGTATTTTGA
130 TGCAATAATTATACACAATAG-GAGTATTTCAA
* ** *
82596663 TAATT-TCACAA-ATCAGGGGTATTTTGGTAATTTTACAAGT-CAGGGGTATTTTAGTAATT
1 TAATTCT-ACAATA-CAGGGGTATTTTGGTAATTCTAC-CCTACAGGGGTATTTCAGTAATT
82596722 TTACAAACCA
Statistics
Matches: 196, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
160 5 0.03
161 180 0.92
162 11 0.06
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (161 bp):
TAATTCTACAATACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATT
GCAATAATTATACACAATAGGAGTATTTCAA
Found at i:82596721 original size:54 final size:53
Alignment explanation
Indices: 82596654--82596831 Score: 198
Period size: 54 Copynumber: 3.3 Consensus size: 53
82596644 CAAATCGAGA
* *
82596654 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTAC-AAGTCAGGG
1 GTATTTTG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACT-AGGG
* *
82596708 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGG
1 GTATTTT-GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGG
** ** *
82596762 GTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTT-GTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACTAGGG
*
82596816 GTATTTTAATAATTTT
1 GTATTTT-GTAATTTT
82596832 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 102 0.95
55 4 0.04
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (53 bp):
GTATTTTGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGG
Found at i:82596736 original size:161 final size:161
Alignment explanation
Indices: 82596341--82596775 Score: 488
Period size: 161 Copynumber: 2.7 Consensus size: 161
82596331 GGTATCTCGG
** ** *
82596341 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACAATACAGGGGTATTTTGGTAATTCTACACTACAGGGGTATTTCAGTAATTCTACCC
* *
82596406 TACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGTATT
66 TACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATT
* * * *
82596471 GCGATAATTCTACACTATAGGGGTATTTCAA
131 GCAATAATTATACACAATAGGAGTATTTCAA
** *
82596502 TAATTCTACCTTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACAATACAGGGGTATTTTGGTAATTCTACACTACAGGGGTATTTCAGTAATTCTACCC
*
82596567 TACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTAT
66 TACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTAT
* * **
82596632 TTCAAT-ATTATACA-AATCGAGAGTATTTTGA
130 TGCAATAATTATACACAATAG-GAGTATTTCAA
* * * *
82596663 TAATT-TCACAA-ATCAGGGGTATTTTGGTAATTTTACAAGT-CAGGGGTATTTTAGTAATTTTA
1 TAATTCT-ACAATA-CAGGGGTATTTTGGTAATTCTAC-ACTACAGGGGTATTTCAGTAATTCTA
** ** * * *
82596725 -CAAACCAGGGGTATTTTAGTAATTTTA-CAAACTAGGGGTATTTTGGTAATT
63 CCCTA-CAGGGGTATTTCGGTAATTCTACCATAC-AGGGGTATTTCGGTAATT
82596776 TTACTGATCG
Statistics
Matches: 239, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
160 10 0.04
161 218 0.91
162 11 0.05
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (161 bp):
TAATTCTACAATACAGGGGTATTTTGGTAATTCTACACTACAGGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATT
GCAATAATTATACACAATAGGAGTATTTCAA
Found at i:82596779 original size:81 final size:81
Alignment explanation
Indices: 82596355--82596775 Score: 310
Period size: 81 Copynumber: 5.2 Consensus size: 81
82596345 TCTACCCTAC
** * **
82596355 AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTT
1 AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTA-CAAACCAGGGGTATTT
** * **
82596419 CGGTAATTCTACCCTA-T
65 TAGTAATTTTA-CAAACT
* * * * *
82596436 AGGGGTATTTCGGTAATTCTACCCTACA-GGGTATTGC-GATAATTCTACACTA-TAGGGGTATT
1 AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTTTACA-AACCAGGGGTATT
* * * **
82596498 TCAATAATTCTACCTTAC-
64 TTAGTAATTTTA-CAAACT
* **
82596516 AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTT
1 AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTA-CAAACCAGGGGTATTT
** * **
82596580 CGGTAATTCTACCTTAC-
65 TAGTAATTTTA-CAAACT
* * * * *
82596597 AGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAAT-ATTATACAAATC-GAGAGTATTT
1 AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACAAACCAG-GGGTATTT
*
82596660 T-GATAATTTCACAAA-T
65 TAG-TAATTTTACAAACT
* ** *
82596676 CAGGGGTATTTTGGTAATTTTACAAGT-CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATT
1 -AGGGGTATTTTGGTAATTCTAC-CCTACAGGGGTATTTCAGTAATTTTACAAACCAGGGGTATT
82596740 TTAGTAATTTTACAAACT
64 TTAGTAATTTTACAAACT
82596758 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
82596776 TTACTGATCG
Statistics
Matches: 290, Mismatches: 34, Indels: 32
0.81 0.10 0.09
Matches are distributed among these distances:
79 8 0.03
80 120 0.41
81 157 0.54
82 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTT
AGTAATTTTACAAACT
Found at i:82596791 original size:81 final size:81
Alignment explanation
Indices: 82596596--82596831 Score: 223
Period size: 81 Copynumber: 2.9 Consensus size: 81
82596586 TTCTACCTTA
* * ** * * * * * *
82596596 CAGGGGTATTTCGGTAATTCTAC-CCTACAGGGGTATTTCAAT-ATTATACAAATCGAGAGTATT
1 CAGGGGTATTTTGGTAATTTTACAAGT-CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATT
*
82596659 TT-GATAATTTCACAAAT
65 TTAG-TAATTTTACAAAT
*
82596676 CAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
82596741 TAGTAATTTTACAAA-
66 TAGTAATTTTACAAAT
* * ** *
82596756 CTAGGGGTATTTTGGTAATTTTAC-TGATC-GAGGGTATTTTGGTAATTTTGTAAACTAAGGGTA
1 C-AGGGGTATTTTGGTAATTTTACAAG-TCAG-GGGTATTTTAGTAATTTTACAAACCAAGGGTA
*
82596819 TTTTAATAATTTT
63 TTTTAGTAATTTT
82596832 GTAAATCGAG
Statistics
Matches: 131, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
80 37 0.28
81 93 0.71
82 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TAGTAATTTTACAAAT
Found at i:82596855 original size:27 final size:27
Alignment explanation
Indices: 82596833--82597103 Score: 398
Period size: 27 Copynumber: 10.0 Consensus size: 27
82596823 AATAATTTTG
* **
82596833 TAAATCGAGGATAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
82596860 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
82596887 TAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
82596914 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
**
82596941 TAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
82596968 TAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
82596995 TAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * * *
82597022 TAAATCAAGGGTAAAACAGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
82597049 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
82597076 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
82597103 T
1 T
82597104 CTTATTTCAG
Statistics
Matches: 224, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 224 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:82597146 original size:27 final size:25
Alignment explanation
Indices: 82597116--82597200 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 25
82597106 TATTTCAGTG
82597116 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* * *
82597143 ATTTTATAAATTGGGGGTACTTTGGTA
1 ATTTTACAAA-TCGAGGTA-TTTGGTA
* *
82597170 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
82597197 ATTT
1 ATTT
82597201 GGTAAACTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
26 5 0.11
27 34 0.74
28 7 0.15
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:82598406 original size:25 final size:25
Alignment explanation
Indices: 82598369--82598438 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
82598359 CTCTTTTAAT
82598369 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
82598394 AATTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
82598419 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82598439 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:82598781 original size:54 final size:54
Alignment explanation
Indices: 82598714--82598889 Score: 174
Period size: 54 Copynumber: 3.3 Consensus size: 54
82598704 AGAATCGAGA
* * * ** *
82598714 GTATTTCGATAATTTCATAAATTAGGGGTATTTTAGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
*
82598768 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
* * ** * * * * ** *
82598822 GTATTTTAGTAATTTTACTGATCAAGAGTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
*
82598876 G-ATTTCGGTAATTT
1 GTATTTTGGTAATTT
82598890 TGTAAATCGA
Statistics
Matches: 103, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 11 0.11
54 92 0.89
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
Found at i:82598853 original size:81 final size:80
Alignment explanation
Indices: 82598737--82598890 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 80
82598727 TTCATAAATT
* * * *
82598737 AGGGGTATTTTAGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTAGTAATTTTACAAGCCAAGAGTATTTTGGTAATTTTACAAACCAAGGG-ATTTC
82598802 AGTAATTTTACAAACC
65 AGTAATTTTACAAACC
* * **
82598818 AGGGGTATTTTAGTAATTTTAC-TGATCAAGAGTATTTTGGTAATTTTGTAAACCAAGGGATTTC
1 AGGGGTATTTTAGTAATTTTACAAG-CCAAGAGTATTTTGGTAATTTTACAAACCAAGGGATTTC
*
82598882 GGTAATTTT
65 AGTAATTTT
82598891 GTAAATCGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
80 13 0.21
81 50 0.79
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
AGGGGTATTTTAGTAATTTTACAAGCCAAGAGTATTTTGGTAATTTTACAAACCAAGGGATTTCA
GTAATTTTACAAACC
Found at i:82598864 original size:27 final size:27
Alignment explanation
Indices: 82598737--82598839 Score: 188
Period size: 27 Copynumber: 3.8 Consensus size: 27
82598727 TTCATAAATT
*
82598737 AGGGGTATTTTAGTAATTTTACAAGCC
1 AGGGGTATTTTAGTAATTTTACAAACC
*
82598764 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACC
82598791 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACC
82598818 AGGGGTATTTTAGTAATTTTAC
1 AGGGGTATTTTAGTAATTTTAC
82598840 TGATCAAGAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTACAAACC
Found at i:82598921 original size:27 final size:27
Alignment explanation
Indices: 82598882--82598985 Score: 154
Period size: 27 Copynumber: 3.9 Consensus size: 27
82598872 AAGGGATTTC
*
82598882 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAT
*
82598909 AGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAT
* * *
82598936 GGTAATTCTATAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAT
*
82598963 GGTAATTTTGTAAATCGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
82598986 CTTTGATAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAT
Found at i:82598995 original size:27 final size:26
Alignment explanation
Indices: 82598853--82599015 Score: 112
Period size: 27 Copynumber: 6.1 Consensus size: 26
82598843 TCAAGAGTAT
* *
82598853 TTTGGTAATTTTGTAAACCAAGGG-A
1 TTTGGTAATTTTGTAAATCGAGGGTA
82598878 TTTCGGTAATTTTGTAAATCGAGGGTAA
1 TTT-GGTAATTTTGTAAATCGAGGGT-A
** * *
82598906 AATAGTAATTCTGTAAATCGAGGGTAA
1 TTTGGTAATTTTGTAAATCGAGGGT-A
** * * *
82598933 AATGGTAATTCTATAAATCAAGGGTAA
1 TTTGGTAATTTTGTAAATCGAGGGT-A
***
82598960 AACGGTAATTTTGTAAATCGAGGGTA
1 TTTGGTAATTTTGTAAATCGAGGGTA
* ** *
82598986 CTTTGATAATTTTACAAGTCGAGGGTA
1 -TTTGGTAATTTTGTAAATCGAGGGTA
82599013 TTT
1 TTT
82599016 CAATAATTTT
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
25 3 0.03
26 23 0.20
27 86 0.75
28 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TTTGGTAATTTTGTAAATCGAGGGTA
Found at i:82599011 original size:54 final size:53
Alignment explanation
Indices: 82598856--82599012 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 53
82598846 AGAGTATTTT
* * * *
82598856 GGTAATTTTGTAAACCAAGGG-ATTTCGGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTATTT-GGTAATTTTATAAATCGAGGGTAAAAC
* * ** * *
82598909 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
1 GGTAATTTTGTAAATCGAGGGT-ATTTGGTAATTTTATAAATCGAGGGTAAAAC
* * *
82598963 GGTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACAAGTCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTA-TTTGGTAATTTTATAAATCGAGGGTA
82599013 TTTCAATAAT
Statistics
Matches: 82, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
53 18 0.22
54 62 0.76
55 2 0.02
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (53 bp):
GGTAATTTTGTAAATCGAGGGTATTTGGTAATTTTATAAATCGAGGGTAAAAC
Found at i:82599047 original size:26 final size:27
Alignment explanation
Indices: 82598977--82599106 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
82598967 ATTTTGTAAA
82598977 TCGAGGGTACTTT-GATAATTTTACAAG
1 TCGAGGGTA-TTTCGATAATTTTACAAG
*
82599004 TCGAGGGTATTTCAATAATTTTACAA-
1 TCGAGGGTATTTCGATAATTTTACAAG
* * *
82599030 TTGATGGTATTTCGATAATTTTATAA-
1 TCGAGGGTATTTCGATAATTTTACAAG
* * *
82599056 ACCAGGGGTACTTT-GGTAATTTTACAAG
1 TCGA-GGGTA-TTTCGATAATTTTACAAG
* *
82599084 TCGAAGGTATTTCAATAATTTTA
1 TCGAGGGTATTTCGATAATTTTA
82599107 GTAAACTAAA
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
26 29 0.35
27 48 0.59
28 5 0.06
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTCGATAATTTTACAAG
Found at i:82615161 original size:16 final size:16
Alignment explanation
Indices: 82615140--82615171 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
82615130 CAGGGCTACG
82615140 GTCCAGTAATAGTAAT
1 GTCCAGTAATAGTAAT
82615156 GTCCAGTAATAGTAAT
1 GTCCAGTAATAGTAAT
82615172 AGGCCCCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (16 bp):
GTCCAGTAATAGTAAT
Found at i:82620097 original size:35 final size:35
Alignment explanation
Indices: 82620051--82620123 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
82620041 TTGTACCCAG
*
82620051 AGCTTTATGTTACTTCTTCTAGAATCAAGACGTGA
1 AGCTTTATGTTACTTCTTCTAGAACCAAGACGTGA
*
82620086 AGCTTTATGTTACTTCTTCTAGAACCAAGATGTGA
1 AGCTTTATGTTACTTCTTCTAGAACCAAGACGTGA
82620121 AGC
1 AGC
82620124 GAGGATCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (35 bp):
AGCTTTATGTTACTTCTTCTAGAACCAAGACGTGA
Found at i:82631210 original size:27 final size:27
Alignment explanation
Indices: 82631180--82631248 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
82631170 AAAATAACCG
82631180 TTTTGCCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * ** *
82631207 TTTTGCCCTTATATGGTAAGATGGTTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
82631234 TTTTGCCCCTATGTG
1 TTTTGCCCTTATGTG
82631249 ATGTATGTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAAATGACTA
Found at i:82638526 original size:22 final size:22
Alignment explanation
Indices: 82638501--82638552 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
82638491 TATGTGCTTT
82638501 ATTAATGAAAATTACAA-GGTTA
1 ATTAATGAAAATTACAATGG-TA
* *
82638523 ATTAAT-AAAGTTATAATGGTA
1 ATTAATGAAAATTACAATGGTA
82638544 ATT-ATGAAA
1 ATTAATGAAA
82638553 TAAATTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 2 0.08
21 16 0.62
22 8 0.31
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (22 bp):
ATTAATGAAAATTACAATGGTA
Found at i:82639510 original size:43 final size:43
Alignment explanation
Indices: 82639452--82639622 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
82639442 ATTATCGAGA
* * *
82639452 TGTGGTTACATGTAAGACCATGTATGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
82639495 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGCTA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * * * * *
82639538 TATGATTTCGTGTAAGACCCTGTTTAGGACAGTAGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
82639580 ATGTGATAACATGTAAAACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
82639623 GAGCATTATG
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 92 0.91
44 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:82645976 original size:24 final size:24
Alignment explanation
Indices: 82645949--82646002 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
82645939 CGGCTCTCCG
82645949 GAGCTTCCTGAGAT-TGGCTCATAT
1 GAGCTTCCTGA-ATATGGCTCATAT
* *
82645973 GAGCTTCCTGATTATGGCTCTTAT
1 GAGCTTCCTGAATATGGCTCATAT
82645997 GAGCTT
1 GAGCTT
82646003 ACCGTTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (24 bp):
GAGCTTCCTGAATATGGCTCATAT
Found at i:82648767 original size:11 final size:11
Alignment explanation
Indices: 82648751--82648776 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
82648741 TCAATATCAT
82648751 TATCAACATTC
1 TATCAACATTC
82648762 TATCAACATTC
1 TATCAACATTC
82648773 TATC
1 TATC
82648777 TCATTGCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (11 bp):
TATCAACATTC
Found at i:82649142 original size:29 final size:29
Alignment explanation
Indices: 82649108--82649280 Score: 129
Period size: 29 Copynumber: 6.0 Consensus size: 29
82649098 TTTTTTGAAG
*
82649108 AATAGTGGCAAAACTGTAAAATCTAAAAA
1 AATAGTGGCAAAACTGTAAAATCTGAAAA
*
82649137 AATAGTGGCAAAACTATAAAATCTGGAAAA
1 AATAGTGGCAAAACTGTAAAATCT-GAAAA
* * * * *
82649167 CA-A-TGGTAGAATTGTAAAAATCTGGAAA
1 AATAGTGGCAAAACTGT-AAAATCTGAAAA
** *
82649195 ACCAGTGGCAAAACTGTAAAATTTTG--AA
1 AATAGTGGCAAAACTGTAAAA-TCTGAAAA
* * * *
82649223 AATTGTGGCAGAACTGTAAATTCTGGAAA
1 AATAGTGGCAAAACTGTAAAATCTGAAAA
** *
82649252 ACCAGTGGCAAAACTATAAAATCTAGAAA
1 AATAGTGGCAAAACTGTAAAATCT-GAAA
82649281 CTTGTGGCAG
Statistics
Matches: 109, Mismatches: 27, Indels: 15
0.72 0.18 0.10
Matches are distributed among these distances:
27 3 0.03
28 30 0.28
29 56 0.51
30 20 0.18
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.23
Consensus pattern (29 bp):
AATAGTGGCAAAACTGTAAAATCTGAAAA
Found at i:82649272 original size:57 final size:57
Alignment explanation
Indices: 82649102--82649291 Score: 209
Period size: 57 Copynumber: 3.3 Consensus size: 57
82649092 TATAATTTTT
* ** **
82649102 TTGAAGAATAGTGGCAAAACTGTAAAATCTAAAAAAATAGTGGCAAAACTATAAAATC
1 TTGAA-AATAGTGGCAGAACTGTAAAATCTGGAAAACCAGTGGCAAAACTATAAAATC
* * * * * * *
82649160 TGGAAAACAATGGTAGAATTGTAAAAATCTGGAAAACCAGTGGCAAAACTGTAAAATT
1 TTGAAAATAGTGGCAGAACTGT-AAAATCTGGAAAACCAGTGGCAAAACTATAAAATC
* *
82649218 TTGAAAATTGTGGCAGAACTGTAAATTCTGGAAAACCAGTGGCAAAACTATAAAATC
1 TTGAAAATAGTGGCAGAACTGTAAAATCTGGAAAACCAGTGGCAAAACTATAAAATC
* * *
82649275 TAGAAACTTGTGGCAGA
1 TTGAAAATAGTGGCAGA
82649292 TGTAACACCC
Statistics
Matches: 108, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
57 59 0.55
58 49 0.45
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (57 bp):
TTGAAAATAGTGGCAGAACTGTAAAATCTGGAAAACCAGTGGCAAAACTATAAAATC
Found at i:82674618 original size:29 final size:28
Alignment explanation
Indices: 82674576--82674686 Score: 82
Period size: 29 Copynumber: 3.9 Consensus size: 28
82674566 GGATGTTACA
* * * *
82674576 GCAGAATTGTAAAATATGGAAAAATAGTG
1 GCAGAACTATAAAATCTGAAAAAAT-GTG
**
82674605 GCAGAACTATAAAATCTGTAAAACCTGTG
1 GCAGAACTATAAAATCTG-AAAAAATGTG
* * * *
82674634 GAAAAATTGTAAAATCT-AAAAAATTGTG
1 GCAGAACTATAAAATCTGAAAAAA-TGTG
*
82674662 GCAGAACTATAAAATCT-ATAAAATG
1 GCAGAACTATAAAATCTGAAAAAATG
82674687 ATGGTACATT
Statistics
Matches: 63, Mismatches: 17, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
27 6 0.10
28 22 0.35
29 31 0.49
30 4 0.06
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.25
Consensus pattern (28 bp):
GCAGAACTATAAAATCTGAAAAAATGTG
Found at i:82674674 original size:28 final size:28
Alignment explanation
Indices: 82674595--82674685 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
82674585 TAAAATATGG
* *
82674595 AAAAATAGTGGCAGAACTATAAAATCTGT
1 AAAAATTGTGGCAGAACTATAAAATCT-A
** * * * *
82674624 AAAACCTGTGGAAAAATTGTAAAATCTA
1 AAAAATTGTGGCAGAACTATAAAATCTA
82674652 AAAAATTGTGGCAGAACTATAAAATCTA
1 AAAAATTGTGGCAGAACTATAAAATCTA
*
82674680 TAAAAT
1 AAAAAT
82674686 GATGGTACAT
Statistics
Matches: 47, Mismatches: 15, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
28 27 0.57
29 20 0.43
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (28 bp):
AAAAATTGTGGCAGAACTATAAAATCTA
Found at i:82675568 original size:162 final size:162
Alignment explanation
Indices: 82675397--82675725 Score: 631
Period size: 162 Copynumber: 2.0 Consensus size: 162
82675387 CCATCTTATG
*
82675397 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCTTTAATTGATTGAAAAATA
1 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGATTGAAAAATA
82675462 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
66 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
82675527 AACCACTAATGTTAGGACTCAATTTATGCTAA
131 AACCACTAATGTTAGGACTCAATTTATGCTAA
*
82675559 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGCTTGAAAAATA
1 TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGATTGAAAAATA
*
82675624 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTACGCTCTT
66 AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
82675689 AACCACTAATGTTAGGACTCAATTTATGCTAA
131 AACCACTAATGTTAGGACTCAATTTATGCTAA
82675721 TTTTA
1 TTTTA
82675726 GTCAATTGTA
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 164 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (162 bp):
TTTTATTTCTACCATAATAAATTGTTATACTAACTTGGTTTCCATCCTTAATTGATTGAAAAATA
AAGAGAAAAAAATGCAAAGAGTGGAATTTAAAACCTTGGCTTTCTAGGCAATCTCTTAAGCTCTT
AACCACTAATGTTAGGACTCAATTTATGCTAA
Found at i:82679496 original size:20 final size:19
Alignment explanation
Indices: 82679481--82679588 Score: 83
Period size: 20 Copynumber: 5.5 Consensus size: 19
82679471 CGTATAAACT
82679481 GTAATTCATTCATATAACTA
1 GTAATTCATTCATATAAC-A
* * *
82679501 GTAAATCATCCGTATAACTA
1 GTAATTCATTCATATAAC-A
* *
82679521 GAAATTCA-TCAGTATATCA
1 GTAATTCATTCA-TATAACA
* **
82679540 GTAATTTAACCATATCAACA
1 GTAATTCATTCATAT-AACA
*
82679560 GTAATTCATTCATTTCAACA
1 GTAATTCATTCATAT-AACA
82679580 GTAATTCAT
1 GTAATTCAT
82679589 ATAATCAGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 6
0.76 0.18 0.07
Matches are distributed among these distances:
19 11 0.16
20 58 0.84
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (19 bp):
GTAATTCATTCATATAACA
Found at i:82679760 original size:25 final size:23
Alignment explanation
Indices: 82679732--82679798 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
82679722 AAACTTCTCC
82679732 TGAGATGATAAACAGTAAGCTCTAT
1 TGAGATG--AAACAGTAAGCTCTAT
* *
82679757 TGAGCTGAAACGGTAAGCTCTAT
1 TGAGATGAAACAGTAAGCTCTAT
* *
82679780 CGAGCTG-AACAGTAAGCTC
1 TGAGATGAAACAGTAAGCTC
82679799 ATACGAGCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 11 0.29
23 21 0.55
25 6 0.16
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (23 bp):
TGAGATGAAACAGTAAGCTCTAT
Found at i:82679797 original size:22 final size:23
Alignment explanation
Indices: 82679741--82679928 Score: 97
Period size: 23 Copynumber: 8.0 Consensus size: 23
82679731 CTGAGATGAT
*
82679741 AAACAGTAAGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATCGAGCTG
*
82679764 AAACGGTAAGCTCTATCGAGCTG
1 AAACAGTAAGCTCTATCGAGCTG
82679787 -AACAGTAAGCTC-ATACGAGCT-
1 AAACAGTAAGCTCTAT-CGAGCTG
* *
82679808 AAATC-GATAAGCTCCAAT-GAGCTAA
1 AAA-CAG-TAAGCT-CTATCGAGCT-G
*
82679833 AAATAGTAAGCTC-ATACGAGCTG
1 AAACAGTAAGCTCTAT-CGAGCTG
*** * *
82679856 AATTGGTAAACTCCAAT-GAGCTG
1 AAACAGTAAGCT-CTATCGAGCTG
*
82679879 AAAACAGTAAGCTCTTAT-GAGCTA
1 -AAACAGTAAGCTC-TATCGAGCTG
82679903 ATATATCAGTAAGCTC-ATACGAGCTG
1 A-A-A-CAGTAAGCTCTAT-CGAGCTG
82679929 TGGTGAGTCT
Statistics
Matches: 130, Mismatches: 15, Indels: 37
0.71 0.08 0.20
Matches are distributed among these distances:
21 2 0.02
22 22 0.17
23 51 0.39
24 31 0.24
25 9 0.07
26 15 0.12
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (23 bp):
AAACAGTAAGCTCTATCGAGCTG
Found at i:82679852 original size:47 final size:47
Alignment explanation
Indices: 82679787--82679903 Score: 162
Period size: 47 Copynumber: 2.5 Consensus size: 47
82679777 TATCGAGCTG
*
82679787 AACAGTAAGCTCATACGAGCTAAATCGATAAGCTCCAATGAGCTAAA
1 AACAGTAAGCTCATACGAGCTAAATCGATAAACTCCAATGAGCTAAA
* * * * *
82679834 AATAGTAAGCTCATACGAGCTGAATTGGTAAACTCCAATGAGCTGAA
1 AACAGTAAGCTCATACGAGCTAAATCGATAAACTCCAATGAGCTAAA
* *
82679881 AACAGTAAGCTCTTATGAGCTAA
1 AACAGTAAGCTCATACGAGCTAA
82679904 TATATCAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (47 bp):
AACAGTAAGCTCATACGAGCTAAATCGATAAACTCCAATGAGCTAAA
Found at i:82684233 original size:24 final size:24
Alignment explanation
Indices: 82684194--82684263 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
82684184 TAAGCTGTAT
*
82684194 TGAGCTG-AAACGGTAAGCTCTGA
1 TGAGCTGAAAACAGTAAGCTCTGA
* * *
82684217 TGAGTTGAAAACAGTAAGATCTTA
1 TGAGCTGAAAACAGTAAGCTCTGA
82684241 TGAGCTGAAATATCAGTAAGCTC
1 TGAGCTGAAA-A-CAGTAAGCTC
82684264 ATACGGTCTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 6 0.16
24 22 0.58
25 1 0.03
26 9 0.24
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTGA
Found at i:82695909 original size:27 final size:27
Alignment explanation
Indices: 82695890--82696139 Score: 254
Period size: 27 Copynumber: 9.3 Consensus size: 27
82695880 AAAATGGTTG
* *
82695890 TTTTACCCTTAAGTGGT-AAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* *
82695916 TTTTACCCTTATGTGATAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
82695943 TTTTGCCCTTATGTGGTAAAATTACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * *
82695970 TTTTGCCCTTAAGTGGT-AAATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * *
82695996 TTTCGCCTTTATGTGATAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
82696023 TTCTT-CCCTTATGTGGTAAAATAACTA
1 TT-TTGCCCTTATGTGGTAAAATGACTA
* * * *
82696050 TTTTTCCCTTAAGTGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
* ** * *
82696077 TTTAGCCCTTATGTAATAAAATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * *
82696104 TTCTGCCCTTATGTGGTAAGATGACTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
82696131 TTTTGCCCT
1 TTTTGCCCT
82696140 GTGTGATGTA
Statistics
Matches: 185, Mismatches: 35, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
26 36 0.19
27 148 0.80
28 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAAATGACTA
Found at i:82696012 original size:80 final size:80
Alignment explanation
Indices: 82695890--82696139 Score: 335
Period size: 80 Copynumber: 3.1 Consensus size: 80
82695880 AAAATGGTTG
*
82695890 TTTTACCCTTAAGTGGTAAATGACTAT-TTTA-CCCTTATGTGATAAAATGACTATTTTGCCCTT
1 TTTTGCCCTTAAGTGGTAAATGA-T-TGTTTAGCCCTTATGTGATAAAATGACTATTTTGCCCTT
*
82695953 ATGTGGTAAAATTACTA
64 ATGTGGTAAAATAACTA
* *
82695970 TTTTGCCCTTAAGTGGTAAATGATTGTTTCGCCTTTATGTGATAAAATGACTATTCTT-CCCTTA
1 TTTTGCCCTTAAGTGGTAAATGATTGTTTAGCCCTTATGTGATAAAATGACTATT-TTGCCCTTA
82696034 TGTGGTAAAATAACTA
65 TGTGGTAAAATAACTA
* * * * *
82696050 TTTTTCCCTTAAGTGGTAAAATGATTGTTTAGCCCTTATGTAATAAAATGATTGTTCTGCCCTTA
1 TTTTGCCCTTAAGTGGT-AAATGATTGTTTAGCCCTTATGTGATAAAATGACTATTTTGCCCTTA
* * *
82696115 TGTGGTAAGATGACTG
65 TGTGGTAAAATAACTA
82696131 TTTTGCCCT
1 TTTTGCCCT
82696140 GTGTGATGTA
Statistics
Matches: 150, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 4 0.03
80 83 0.55
81 62 0.41
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (80 bp):
TTTTGCCCTTAAGTGGTAAATGATTGTTTAGCCCTTATGTGATAAAATGACTATTTTGCCCTTAT
GTGGTAAAATAACTA
Found at i:82696495 original size:24 final size:24
Alignment explanation
Indices: 82696468--82696513 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
82696458 GTATACTATC
*
82696468 ACTGCGCTGATTACTGTTACTGTT
1 ACTGCACTGATTACTGTTACTGTT
*
82696492 ACTGCACTGTTTACTGTTACTG
1 ACTGCACTGATTACTGTTACTG
82696514 CAATGGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (24 bp):
ACTGCACTGATTACTGTTACTGTT
Found at i:82696505 original size:18 final size:17
Alignment explanation
Indices: 82696480--82696515 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
82696470 TGCGCTGATT
82696480 ACTGTTACTGTTACTGC
1 ACTGTTACTGTTACTGC
82696497 ACTGTTTACTGTTACTGC
1 ACTG-TTACTGTTACTGC
82696515 A
1 A
82696516 ATGGGCCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (17 bp):
ACTGTTACTGTTACTGC
Found at i:82700007 original size:27 final size:27
Alignment explanation
Indices: 82699988--82700347 Score: 443
Period size: 27 Copynumber: 13.3 Consensus size: 27
82699978 AAAATGGTTG
*
82699988 TTTTGCCCTTAAGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
82700015 TTTTGCCCTTATGTGATAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
82700042 TTTTTCCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * * *
82700069 TTTTGTCCTTAAGTGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
* ** *
82700096 TTTTGCCCTTATGTGATAAAATTTCTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
*
82700123 TTCTGCCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * * *
82700150 TTTTGCCCTTAAGTGGTAAAATAATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
* *
82700177 TTTTGCCCTTATGTGATAAAATGATTGA
1 TTTTGCCCTTATGTGGTAAAATGACT-A
* *
82700205 -TCTGCCCTTATGTGGTAAAATAACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * *
82700231 TTTTGCCCTTAAGTGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
82700258 TTTTGCCCTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* *
82700285 TTCTGCCTTTATGTGGTAAAATGACTA
1 TTTTGCCCTTATGTGGTAAAATGACTA
* * * *
82700312 TTTTGCCCTTATATGGTAAGATGATTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
82700339 TTTTGCCCT
1 TTTTGCCCT
82700348 ATTTGATGTA
Statistics
Matches: 282, Mismatches: 49, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.00
27 281 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAAATGACTA
Found at i:82700112 original size:81 final size:81
Alignment explanation
Indices: 82699988--82700347 Score: 562
Period size: 81 Copynumber: 4.4 Consensus size: 81
82699978 AAAATGGTTG
* * * *
82699988 TTTTGCCCTTAAGTGGTAAAATGACTATTTTGCCCTTATGTGATAAAATGACTATTTTTCCCTTA
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
82700053 TGTGGTAAAATGACTA
66 TGTGGTAAAATGACTA
* ** *
82700069 TTTTGTCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATTTCTGTTCTGCCCTTA
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
82700134 TGTGGTAAAATGACTA
66 TGTGGTAAAATGACTA
* *
82700150 TTTTGCCCTTAAGTGGTAAAATAATTGTTTTGCCCTTATGTGATAAAATGATTGA-TCTGCCCTT
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACT-ATTCTGCCCTT
*
82700214 ATGTGGTAAAATAACTA
65 ATGTGGTAAAATGACTA
* *
82700231 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTATTCTGCCTTTA
1 TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
82700296 TGTGGTAAAATGACTA
66 TGTGGTAAAATGACTA
*
82700312 TTTTGCCCTTATA-TGGTAAGATGATTGTTTTGCCCT
1 TTTTGCCCTTA-AGTGGTAAAATGATTGTTTTGCCCT
82700348 ATTTGATGTA
Statistics
Matches: 255, Mismatches: 21, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
80 1 0.00
81 253 0.99
82 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (81 bp):
TTTTGCCCTTAAGTGGTAAAATGATTGTTTTGCCCTTATGTGATAAAATGACTATTCTGCCCTTA
TGTGGTAAAATGACTA
Found at i:82700700 original size:18 final size:18
Alignment explanation
Indices: 82700677--82700743 Score: 109
Period size: 18 Copynumber: 3.7 Consensus size: 18
82700667 AAGACTTGTA
82700677 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
82700695 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
82700713 AACTGTTACTGCACT-ATT
1 TACTGTTACTGCACTGA-T
82700731 TACTGTTACTGCA
1 TACTGTTACTGCA
82700744 ATGGGCCAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 1 0.02
18 45 0.98
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:82704129 original size:9 final size:9
Alignment explanation
Indices: 82704115--82704147 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
82704105 GAATCTCAAA
82704115 AAAAAATAT
1 AAAAAATAT
82704124 AAAAAATA-
1 AAAAAATAT
82704132 AAATAAATAT
1 AAA-AAATAT
82704142 AAAAAA
1 AAAAAA
82704148 ATTAATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 3 0.14
9 16 0.73
10 3 0.14
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAAATAT
Found at i:82704139 original size:18 final size:18
Alignment explanation
Indices: 82704113--82704147 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82704103 ATGAATCTCA
82704113 AAAAAAAATATAAAAAAT
1 AAAAAAAATATAAAAAAT
*
82704131 AAAATAAATATAAAAAA
1 AAAAAAAATATAAAAAA
82704148 ATTAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAAAAATATAAAAAAT
Found at i:82704481 original size:19 final size:19
Alignment explanation
Indices: 82704457--82704495 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
82704447 AGTAGACCAA
*
82704457 TTAAGTCTGTTGGGGTTGT
1 TTAAGTCTGTTAGGGTTGT
* *
82704476 TTAAGTTTTTTAGGGTTGT
1 TTAAGTCTGTTAGGGTTGT
82704495 T
1 T
82704496 AACTTCAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.31, T:0.54
Consensus pattern (19 bp):
TTAAGTCTGTTAGGGTTGT
Found at i:82712295 original size:43 final size:42
Alignment explanation
Indices: 82712247--82712396 Score: 201
Period size: 43 Copynumber: 3.5 Consensus size: 42
82712237 ACTACCGAGA
82712247 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTGT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT-T
*
82712290 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATCGTT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
* *** *
82712332 ATATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCGATA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TT
* *
82712376 TGAGATTACATGTAATACCAT
1 TGTGATTACATGTAAGACCAT
82712397 ATCCAGGACA
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 90 0.98
44 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
Found at i:82723573 original size:41 final size:42
Alignment explanation
Indices: 82723511--82723594 Score: 100
Period size: 41 Copynumber: 2.0 Consensus size: 42
82723501 TTGATATCTC
* *
82723511 AAAGTCCATGGTTGTACCATGGCA-AAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCATAAGGAAGAATTGACGGA
*
82723552 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGCA--TAAGGAAGAATTGACGG
82723595 TTAAGGATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
40 3 0.08
41 18 0.50
44 15 0.42
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (42 bp):
AAAGTCCATGGTTATAACATGGCATAAGGAAGAATTGACGGA
Found at i:82723715 original size:53 final size:55
Alignment explanation
Indices: 82723603--82723726 Score: 155
Period size: 53 Copynumber: 2.3 Consensus size: 55
82723593 GGTTAAGGAT
* * *
82723603 ACCATGTCAAGACATCGCATTGATGAGTTACTATAAGGTAAAGGTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGGTACCACGTAAG
* * * *
82723658 ACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGG-CAAGGATACCACGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGG-TACCACGTAAG
82723711 ACCATGTCAAGACATG
1 ACCATGTCAAGACATG
82723727 AAAATGGTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.07
53 29 0.49
54 1 0.02
55 25 0.42
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (55 bp):
ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTAAAGGTACCACGTAAG
Found at i:82727496 original size:19 final size:19
Alignment explanation
Indices: 82727472--82727512 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
82727462 TATACATGAT
82727472 ATGCCCCCGATACTAATAA
1 ATGCCCCCGATACTAATAA
82727491 ATGCCCCCGATACTAATAA
1 ATGCCCCCGATACTAATAA
82727510 ATG
1 ATG
82727513 TGAGATCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.29, G:0.12, T:0.22
Consensus pattern (19 bp):
ATGCCCCCGATACTAATAA
Found at i:82728469 original size:20 final size:21
Alignment explanation
Indices: 82728446--82728488 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
82728436 ATAAGCATGT
*
82728446 ATTTTGAA-GTTTCTTGATAG
1 ATTTTGAATGCTTCTTGATAG
*
82728466 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTCTTGATAG
82728487 AT
1 AT
82728489 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTCTTGATAG
Found at i:82731872 original size:49 final size:49
Alignment explanation
Indices: 82731819--82732050 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
82731809 CTGGTACGCA
*
82731819 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
82731868 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * * *
82731918 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* * *
82731969 TAGTAGCCTGCATTTAGTACTACACATGCGACTAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
82732018 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
82732051 TCACAATAGA
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 71 0.46
50 47 0.31
51 36 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:82731945 original size:28 final size:28
Alignment explanation
Indices: 82731863--82731946 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
82731853 ATTATCCGGT
*
82731863 ACACGTAGTAGCCTGCACTTAGTACTAC
1 ACACGTAGTAACCTGCACTTAGTACTAC
* * *
82731891 ACACGT-G--ACCT-AAC-CA-T-CTGAT
1 ACACGTAGTAACCTGCACTTAGTACT-AC
82731913 ACACGTAGTAACCTGCACTTAGTACTAC
1 ACACGTAGTAACCTGCACTTAGTACTAC
82731941 ACACGT
1 ACACGT
82731947 GATCGAAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 2 0.05
25 7 0.17
26 2 0.05
27 2 0.05
28 14 0.34
29 2 0.05
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (28 bp):
ACACGTAGTAACCTGCACTTAGTACTAC
Found at i:82732047 original size:100 final size:99
Alignment explanation
Indices: 82731819--82732050 Score: 313
Period size: 100 Copynumber: 2.3 Consensus size: 99
82731809 CTGGTACGCA
* * *
82731819 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
* *
82731884 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
* * * * *
82731918 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCATT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* ** *
82731983 TAGTACTACACATGCGA-CTAATTATCCGGTACACG
64 TAGTACTACACACGCGACCTAACCATCCGATACACG
82732018 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
82732051 TCACAATAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 29 0.25
100 47 0.41
101 39 0.34
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:82735621 original size:46 final size:46
Alignment explanation
Indices: 82735567--82735793 Score: 294
Period size: 46 Copynumber: 4.9 Consensus size: 46
82735557 GTGTGCTCTT
*
82735567 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
82735613 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* *
82735659 TGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* *** ** *
82735705 TGATATGAAACGAACAAGACCATGGTTGAAAGACGCCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * * * *
82735751 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
82735794 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:82746495 original size:38 final size:39
Alignment explanation
Indices: 82746411--82746545 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
82746401 ACCAATATGG
*
82746411 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
82746450 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
82746488 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATTTAG-TGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAA--TAGTTGA
*
82746529 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
82746546 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 35 0.47
40 3 0.04
41 16 0.21
42 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:82747557 original size:25 final size:25
Alignment explanation
Indices: 82747500--82747547 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82747490 TGTAACTTTC
* *
82747500 TTTCCTTTTTTTTACTTCTTTTACG
1 TTTCATTTGTTTTACTTCTTTTACG
*
82747525 TTTCATTTGTTTTATTTCTTTTA
1 TTTCATTTGTTTTACTTCTTTTA
82747548 TGTTATATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTCATTTGTTTTACTTCTTTTACG
Found at i:82749092 original size:50 final size:49
Alignment explanation
Indices: 82748978--82749164 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 49
82748968 TGAGGTCGCA
* * * *
82748978 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
* * **
82749029 TGTGTAGTGCTAAGTGCAGGTTACTACGTGTATTAGA-TAGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
82749079 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
82749128 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
82749165 TGGCTTCGGC
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.35
50 41 0.36
51 29 0.25
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:82750529 original size:26 final size:26
Alignment explanation
Indices: 82750500--82750607 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82750490 TGGTACAAAT
82750500 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82750526 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82750552 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82750578 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82750604 TGAT
1 TGAT
82750608 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82752284 original size:54 final size:54
Alignment explanation
Indices: 82752202--82752345 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
82752192 TGGAGGAAGC
*
82752202 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
82752256 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
82752310 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
82752346 ACTCCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:82752356 original size:27 final size:27
Alignment explanation
Indices: 82752205--82752360 Score: 176
Period size: 27 Copynumber: 5.8 Consensus size: 27
82752195 AGGAAGCGTC
*
82752205 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
82752232 CTGGTGGCTCTGCCATATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
82752259 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
82752286 CTGGTGGCTTTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
82752313 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* * *
82752340 CTGGTGACTCCGTCACAATAT
1 CTGGTGGCTCTGCCACAATAT
82752361 TTGGCAGCCT
Statistics
Matches: 111, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 9 0.08
27 100 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:82752357 original size:81 final size:81
Alignment explanation
Indices: 82752205--82752358 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
82752195 AGGAAGCGTC
* * *
82752205 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
82752270 GCCACAATTATCTGAT
66 GCCACAATTATCTGAT
* * *
82752286 CTGGTGGCTTTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
* *
82752349 CCGTCACAAT
64 ACGCCACAAT
82752359 ATTTGGCAGC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 10 0.16
81 53 0.84
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATTATCTGAT
Done.