Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 258 of 320
Found at i:84116189 original size:14 final size:14
Alignment explanation
Indices: 84116170--84116204 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
84116160 TGATTTTTTT
*
84116170 TTGAAAAATAAAAA
1 TTGAAAAACAAAAA
*
84116184 TTGAAAAACAGAAA
1 TTGAAAAACAAAAA
84116198 TTGAAAA
1 TTGAAAA
84116205 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:84116240 original size:91 final size:92
Alignment explanation
Indices: 84116105--84116348 Score: 329
Period size: 91 Copynumber: 2.7 Consensus size: 92
84116095 AAAGCAGATT
84116105 TTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAG-C-TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
84116169 TTTGAAAAATAAAAATTGAAAAACAGAAA
64 TTTCAAAAACAAAAATTGAAAAACAGAAA
*
84116198 TTGAAAATACCTCAGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--CTTTT
1 TTGAAAATACCTCAGCTGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
84116259 TTCAAAAGCAGAAATTGAAAAACAGAAA
65 TTCAAAAACAAAAATTGAAAAACAGAAA
* * *
84116287 TTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTC-AAGATATGAGTTGATTTT
1 TTGAAAATACCTCAGC-TGTGACCCGAGGCTCAACTCACCTCTCGCA-ATATGAGTTGATTTT
84116349 GGAAAAGTAG
Statistics
Matches: 134, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
89 44 0.33
90 4 0.03
91 68 0.51
92 2 0.01
93 15 0.11
94 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (92 bp):
TTGAAAATACCTCAGCTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
TCAAAAACAAAAATTGAAAAACAGAAA
Found at i:84116284 original size:14 final size:14
Alignment explanation
Indices: 84116262--84116293 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
84116252 GACTTTTTTC
*
84116262 AAAAGCAGAAATTG
1 AAAAACAGAAATTG
84116276 AAAAACAGAAATTG
1 AAAAACAGAAATTG
84116290 AAAA
1 AAAA
84116294 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.06, G:0.16, T:0.12
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:84116302 original size:89 final size:89
Alignment explanation
Indices: 84116087--84116721 Score: 371
Period size: 89 Copynumber: 7.1 Consensus size: 89
84116077 TGGTCTTTTT
* * **
84116087 GAAATTTAAAAGCAGATTTTGAAAATACCTC-GACATGTGACCC-GAGGCTCAACTCACCTCTCG
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAG-C--GTGACCCTGAGGCTCAACTCACCTCTCG
**
84116150 CAATATGAGTTGATTTTTTTTTGAAAAATA
63 CAATATGAGTTGA---TTTTTTGAAAAGCA
*
84116180 AAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAA
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCTGAGGCTCAACTCACCTCTCGCAA
*
84116244 TATGAGTTGACTTTTTTCAAAAGCA
66 TATGAGTTGA-TTTTTTGAAAAGCA
* * *
84116269 GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTC-A
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTGACCCTGAGGCTCAACTCACCTCTCGC
* *
84116332 AGATATGAGTTGA-TTTTGGAAAAGTA
64 A-ATATGAGTTGATTTTTTGAAAAGCA
* * ** *** *** * * *
84116358 GAAATT-AAAAACAGAATTTGAACA-A-CAGAATTTGAAAAT-A-TCTCGGAA-TGTAAC-C-CG
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCTGAGGCTC--AACT-CACCTCTCG
*** * ** * ** * * * **
84116415 -AGGCTCAACTCACCTCTCGCCATATGAGTT
63 CAATATGAGTTGATTTTTTG--A-A-AAGCA
** * * * * *
84116445 GATTTTTTAAAAGTATAAAAATTGAAAATACCTCAGCATGTGAGCC-AAGGCTCAACTCACCTCT
1 GA-AATTGAAAA--ACAGAAATTGAAAATACCTCAGC--GTGACCCTGAGGCTCAACTCACCTCT
84116509 CGCAATATGAGTTGATTTTTTGAAAAGCA
61 CGCAATATGAGTTGATTTTTTGAAAAGCA
* * * *
84116538 GAGATTGAAAAGCA-AAAATGAAAATTCCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAA
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCTGAGGCTCAACTCACCTCTCGCAA
*
84116601 TATGAGTT-AATTTTTGACAAA-CA
66 TATGAGTTGATTTTTTGA-AAAGCA
* ** *
84116624 TAAATTTGAAAAACAGATTTTGAAAATACCTCAGCGTG-CCCTGAGGCTTAACTCACCTCTCGCA
1 GAAA-TTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCTGAGGCTCAACTCACCTCTCGCA
*
84116688 ATATGAGTTGA-TTTTTGAAAA-TA
65 ATATGAGTTGATTTTTTGAAAAGCA
*
84116711 TAAATTGAAAA
1 GAAATTGAAAA
84116722 TACCTCAGCG
Statistics
Matches: 416, Mismatches: 91, Indels: 77
0.71 0.16 0.13
Matches are distributed among these distances:
82 4 0.01
83 8 0.02
84 6 0.01
85 5 0.01
86 24 0.06
87 59 0.14
88 77 0.19
89 82 0.20
90 5 0.01
91 78 0.19
92 9 0.02
93 33 0.08
94 6 0.01
95 7 0.02
96 5 0.01
97 8 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (89 bp):
GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTGAAAAGCA
Found at i:84116384 original size:14 final size:14
Alignment explanation
Indices: 84116367--84116393 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84116357 AGAAATTAAA
84116367 AACAGAATTTGAAC
1 AACAGAATTTGAAC
84116381 AACAGAATTTGAA
1 AACAGAATTTGAA
84116394 AATATCTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.22
Consensus pattern (14 bp):
AACAGAATTTGAAC
Found at i:84116443 original size:102 final size:102
Alignment explanation
Indices: 84116262--84116459 Score: 252
Period size: 102 Copynumber: 1.9 Consensus size: 102
84116252 GACTTTTTTC
* ** * *
84116262 AAAAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACC
1 AAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGAATGTAACCCAAGGCTCAACTCACC
*
84116327 TCTCAAGATATGAGTTGATTTTGGAAAAGTAGAAATT
66 TCTCAACATATGAGTTGATTTTGGAAAAGTAGAAATT
* * * * * *
84116364 AAAAACAGAATTTGAACAACAGAATTTGAAAATATCTCGGAATGTAACCCGAGGCTCAACTCACC
1 AAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGAATGTAACCCAAGGCTCAACTCACC
** **
84116429 TCTCGCCATATGAGTTGATTTTTTAAAAGTA
66 TCTCAACATATGAGTTGATTTTGGAAAAGTA
84116460 TAAAAATTGA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (102 bp):
AAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGAATGTAACCCAAGGCTCAACTCACC
TCTCAACATATGAGTTGATTTTGGAAAAGTAGAAATT
Found at i:84116688 original size:88 final size:85
Alignment explanation
Indices: 84116462--84116721 Score: 324
Period size: 88 Copynumber: 3.0 Consensus size: 85
84116452 TAAAAGTATA
* * *
84116462 AAAATTGAAAATACCTCAGCATGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-AAT
* * *
84116526 TTTTGAAAAGCAGAGATTGAAAAGC
62 TTTTGAAAA-CATAAATTGAAAAAC
* *
84116551 AAAAATGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 AAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
84116616 GACAAACATAAATTTGAAAAAC
66 GA-AAACATAAA-TTGAAAAAC
** * *
84116638 AGATTTTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTT
1 A-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
*
84116703 TGAAAATATAAATTGAAAA
65 TGAAAACATAAATTGAAAA
84116722 TACCTCAGCG
Statistics
Matches: 152, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
86 21 0.14
87 53 0.35
88 60 0.39
89 18 0.12
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (85 bp):
AAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
GAAAACATAAATTGAAAAAC
Found at i:84117629 original size:41 final size:43
Alignment explanation
Indices: 84117577--84117657 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
84117567 TGTGTTAATC
84117577 AAGACGCCC-TTTTCAGGTTTTCACCTTGA-TCCCTTTTTTTT
1 AAGACGCCCTTTTTCAGGTTTTCACCTTGATTCCCTTTTTTTT
* * * *
84117618 AAGATGCCCTTTTTCGGGTTTTCATCTTGATTTCCTTTTT
1 AAGACGCCCTTTTTCAGGTTTTCACCTTGATTCCCTTTTT
84117658 CTTCAAGCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 8 0.24
42 18 0.53
43 8 0.24
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (43 bp):
AAGACGCCCTTTTTCAGGTTTTCACCTTGATTCCCTTTTTTTT
Found at i:84137978 original size:23 final size:22
Alignment explanation
Indices: 84137936--84137983 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 22
84137926 CTCTTAAGTT
*
84137936 AAAAGAGATGGAGAATGAAG-G
1 AAAAGAGAGGGAGAATGAAGAG
*
84137957 AAAATAGAGGGAGAAGTAGAAGAG
1 AAAAGAGAGGGAGAA-T-GAAGAG
84137981 AAA
1 AAA
84137984 GGAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 13 0.59
22 1 0.05
23 4 0.18
24 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.35, T:0.08
Consensus pattern (22 bp):
AAAAGAGAGGGAGAATGAAGAG
Found at i:84150601 original size:129 final size:127
Alignment explanation
Indices: 84150339--84150668 Score: 387
Period size: 129 Copynumber: 2.6 Consensus size: 127
84150329 AGTCCAATGA
* * * * * * *
84150339 GAAAATCGAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCTAGATATCGAACATTGCCTT-
1 GAAAATTGAAACCCAGCACGGTAGGGCACGATTCC-CCAATTGCCAAACATCGAACATTGCCTTC
* * *
84150403 ATTTTAGAATTCAGAAAACATGAGTGAAATTCTAAAGGGATATTCGATCATTTTGAACAAACG
65 GTTTTAAAATTCAGAAAACATGAGTGAAATTCCAAAGGGATATTCGATCATTTTGAACAAACG
* *
84150466 GAAAATTGAAACCCAGCACGGTAGTGCACGATTCCCCAAGTTGCCAAACATCGAACATTACCTTC
1 GAAAATTGAAACCCAGCACGGTAGGGCACGATTCCCCAA-TTGCCAAACATCGAACATTGCCTTC
*** * * *
84150531 GTTTTAAAATTTTTAAAGACATGGGTGAAATTCCAAA-GGATTATTCGATTATTTTGAATAAACA
65 GTTTTAAAATTCAGAAA-ACATGAGTGAAATTCCAAAGGGA-TATTCGATCATTTTGAACAAAC-
84150595 G
127 G
* * * *
84150596 G-AAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGGACGTTGCCTTC
1 GAAAATTGAAACCCAGCACGGTAGGGCACGATTCCCC-AATTGCCAAACATCGAACATTGCCTTC
84150660 GTTTTAAAA
65 GTTTTAAAA
84150669 AAAAATTAAT
Statistics
Matches: 173, Mismatches: 24, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
126 3 0.02
127 51 0.29
128 15 0.09
129 100 0.58
130 4 0.02
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (127 bp):
GAAAATTGAAACCCAGCACGGTAGGGCACGATTCCCCAATTGCCAAACATCGAACATTGCCTTCG
TTTTAAAATTCAGAAAACATGAGTGAAATTCCAAAGGGATATTCGATCATTTTGAACAAACG
Found at i:84151441 original size:17 final size:15
Alignment explanation
Indices: 84151401--84151433 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
84151391 ACATGACAGA
*
84151401 ATAATAAACCAATAT
1 ATAATAAAACAATAT
84151416 ATAATAAAACAATAT
1 ATAATAAAACAATAT
84151431 ATA
1 ATA
84151434 CATGAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAATAAAACAATAT
Found at i:84159901 original size:92 final size:92
Alignment explanation
Indices: 84159744--84160016 Score: 420
Period size: 92 Copynumber: 3.0 Consensus size: 92
84159734 TTTGACATGA
* * * *
84159744 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGGATCTTTCAAC
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
84159809 CATGGTCTTATTCATTTCATATCACGT
66 CATGGTCTTATTCATTTCATATCACGT
* * * *
84159836 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTAACTTTCAAC
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
84159901 CATGGTCTTATTCATTTCATATCACGT
66 CATGGTCTTATTCATTTCATATCACGT
* * * *
84159928 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
**
84159993 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTATTCATTTCATATCA
84160017 GAGAGCACAC
Statistics
Matches: 163, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 163 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (92 bp):
TGCCATGGTGTCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCACGT
Found at i:84160017 original size:46 final size:46
Alignment explanation
Indices: 84159744--84160016 Score: 368
Period size: 46 Copynumber: 5.9 Consensus size: 46
84159734 TTTGACATGA
* * * * *
84159744 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* *
84159790 TGCCATGGGATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *** *
84159836 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
84159882 TGCCATGGTAACTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
84159928 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
84159974 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
84160017 GAGAGCACAC
Statistics
Matches: 203, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 199 0.98
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:84162189 original size:30 final size:30
Alignment explanation
Indices: 84162122--84162189 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
84162112 CACCCTTAAA
* *
84162122 ATATTTGCACTATTAGTCCTTCAAATTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
84162152 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
84162181 AGTATTTAC
1 A-TATTTAC
84162190 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:84162574 original size:33 final size:33
Alignment explanation
Indices: 84162537--84162610 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
84162527 TCAGAGAGTT
* *
84162537 ACACGGGCAAGGCCCACGGCCATGTGTTCAGAC
1 ACACGGGCAAGGCACACGGCCATGTGTTCAAAC
*
84162570 ACACGGGCAAGGCACACGGCCGTGTGTTCAAAC
1 ACACGGGCAAGGCACACGGCCATGTGTTCAAAC
84162603 ACACGGGC
1 ACACGGGC
84162611 GTGTGGTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.31, T:0.11
Consensus pattern (33 bp):
ACACGGGCAAGGCACACGGCCATGTGTTCAAAC
Found at i:84168962 original size:30 final size:30
Alignment explanation
Indices: 84168928--84168987 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
84168918 CTTTAATACG
84168928 AACTTTTGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTTGAAAAATTACAC-TTTTGCCCCTA
*
84168958 AACTTTTGCAAAATTACACTTTTGCCCCTA
1 AACTTTTGAAAAATTACACTTTTGCCCCTA
84168988 GCCTTGGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTTGAAAAATTACACTTTTGCCCCTA
Found at i:84172730 original size:22 final size:22
Alignment explanation
Indices: 84172687--84172734 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
84172677 ATTTAAAAAT
* *
84172687 AAATGATATATAAGACACTTTA
1 AAATGACATATAAAACACTTTA
* *
84172709 AAATGACATATAAAAGAGTTTA
1 AAATGACATATAAAACACTTTA
84172731 AAAT
1 AAAT
84172735 AAATAATATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.29
Consensus pattern (22 bp):
AAATGACATATAAAACACTTTA
Found at i:84172820 original size:57 final size:55
Alignment explanation
Indices: 84172720--84172846 Score: 139
Period size: 57 Copynumber: 2.3 Consensus size: 55
84172710 AATGACATAT
* * * * * *
84172720 AAAAGAGTTTAAAATAAATAATATGTAAAAGAGAAATTTAAAATAAATAATGTAC
1 AAAAAAGTTTAAAAAAAAAAATATATAAAAGAGAAATTCAAAATAAATAATATAC
* *
84172775 AAAAACAGTTTAAATAAAAAAAATATATATAAAGA-TAATTCAAAATAAATAATATAT
1 AAAAA-AGTTTAAA-AAAAAAAATATATA-AAAGAGAAATTCAAAATAAATAATATAC
*
84172832 ATAAAAGTTTAAAAA
1 AAAAAAGTTTAAAAA
84172847 TTTTAAAATT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
55 6 0.10
56 16 0.27
57 33 0.55
58 5 0.08
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (55 bp):
AAAAAAGTTTAAAAAAAAAAATATATAAAAGAGAAATTCAAAATAAATAATATAC
Found at i:84172831 original size:29 final size:28
Alignment explanation
Indices: 84172727--84172832 Score: 97
Period size: 29 Copynumber: 3.7 Consensus size: 28
84172717 TATAAAAGAG
*
84172727 TTTAAAATAAATAATATGTAAAAGAGAAA
1 TTTAAAATAAATAATATATAAAAGA-AAA
* * * *
84172756 TTTAAAATAAATAATGTACAAAA-ACAG
1 TTTAAAATAAATAATATATAAAAGAAAA
* * *
84172783 TTTAAATAAAAAAAATATATATAAAGATAA
1 TTTAAA-ATAAATAATATATA-AAAGAAAA
*
84172813 TTCAAAATAAATAATATATA
1 TTTAAAATAAATAATATATA
84172833 TAAAAGTTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 7 0.12
28 11 0.18
29 35 0.58
30 7 0.12
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (28 bp):
TTTAAAATAAATAATATATAAAAGAAAA
Found at i:84172943 original size:27 final size:28
Alignment explanation
Indices: 84172913--84172965 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
84172903 TAATAAAGTG
*
84172913 ATTTAAAATAAATAAT-ATAAGAAAAAA
1 ATTTAAAATAAATAATAATAACAAAAAA
84172940 ATTTAAAATAAATAATAATAACAAAA
1 ATTTAAAATAAATAATAATAACAAAA
84172966 CAGTTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (28 bp):
ATTTAAAATAAATAATAATAACAAAAAA
Found at i:84174003 original size:13 final size:14
Alignment explanation
Indices: 84173985--84174016 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
84173975 TTGCTATTGT
84173985 TTCTTCTGCTTGG-
1 TTCTTCTGCTTGGC
84173998 TTCTTCTGCTTGGC
1 TTCTTCTGCTTGGC
84174012 TTCTT
1 TTCTT
84174017 GTGTGTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.00, C:0.25, G:0.19, T:0.56
Consensus pattern (14 bp):
TTCTTCTGCTTGGC
Found at i:84174655 original size:44 final size:44
Alignment explanation
Indices: 84174554--84175260 Score: 498
Period size: 44 Copynumber: 15.6 Consensus size: 44
84174544 TTTAATTTGT
* * * *
84174554 TCCACTGTC-ACTTCAGGGAAATAAGATTTGCTATCTTCAGCCTGC
1 TCCACTG-CAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTGC
* * *
84174599 CCCACTGTAACTTCAGGGAGATAAGACTTGTAACTTCAACCTCC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
** * * * * *
84174643 TCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
** * *
84174687 TTTACTACAACTTCAGGGAGATAAGATTTGTCATGGTTACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGT-A-----ACTTCAACCTGC
* * *
84174737 TCCACTGCAACTTCAGGGAGATAAGGTTTGTAATTTGTAGCTTCAATCC-GT
1 TCCACTGCAACTTCAGGGAGATAA-----G--ACTTGTAACTTCAA-CCTGC
* * **
84174788 TCCACTGCAACTTCAGGGAAATAAGA-TTCGTTACCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-G-TAACTTCAACCTGC
* * *
84174833 TCCACTGTAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGA
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
* * * * * *
84174877 TCTACTGCAACTTCAGGAAGATAAGGCTTGT-GCTTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAAC-TTCAACCTGC
* * * *
84174921 TCCACTGCAACTTCAGGGAGATAATATTTGCTTTAATGATTTTAATCCAT-C
1 TCCACTGCAACTTCAGGGAGATAAGACTTG---T-A--ACTTCAA-CC-TGC
* * * **
84174972 -CTACTGCAACTTCAGATGA-ATAAGA-TTCGCTATTCTT-AGTCTGC
1 TCCACTGCAACTTCAG-GGAGATAAGACTT-G-TA-ACTTCAACCTGC
*
84175016 TTCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
* * *
84175060 TCCACTGCAACTTCAGGAAGATAAGGCTTGTAACTTCAACTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
* * * *
84175104 TCCACTGTAACTTCAGGGAGATAAGGCTTGTGACTTCAACTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
* * * *
84175148 TCCACTGTAACTTCAGGGAGATAAGGCTTGTGACTTCAACTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
* * * ** * *
84175192 TCCACT-TAACCTCAGGGAGATAAGGCTTGTGGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
*
84175235 TCCATTGCAACTTCAGGGAGATAAGA
1 TCCACTGCAACTTCAGGGAGATAAGA
84175261 TTCGCCATGG
Statistics
Matches: 535, Mismatches: 90, Indels: 75
0.76 0.13 0.11
Matches are distributed among these distances:
43 44 0.08
44 301 0.56
45 79 0.15
46 7 0.01
47 2 0.00
48 1 0.00
49 2 0.00
50 54 0.10
51 34 0.06
52 3 0.01
55 1 0.00
56 1 0.00
57 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGC
Found at i:84174980 original size:234 final size:225
Alignment explanation
Indices: 84174552--84175172 Score: 661
Period size: 234 Copynumber: 2.7 Consensus size: 225
84174542 GCTTTAATTT
* *
84174552 GTTCCACTGTC-ACTTCAGGGAAATAAGATTTGCTATCTTCAGCCTGCCCCACTGTAACTTCAGG
1 GTTCCACTG-CAACTTCAGGGAAATAAGA-TTG-TAACTTCAGCCTGCTCCACTGTAACTTCA-G
* * *
84174616 GAGATAAGACTTGTAACTTCAACCTCCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTA
62 GAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGT-GCTTTA
* ** * * *
84174681 ATCTACTTTACTACAACTTCAGGGAGATAAGATTTGTCATGGTTACTTCAACCTGCTCCACTGCA
126 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAATGATTA-TTCAACCTGCTCCACTGCA
* *
84174746 ACTTCAG-GGAGATAAGGTTTG-TAATT-TGTAGCTTCAATCC
190 ACTTCAGAGGA-ATAAGATTCGCT-ATTCT-TAG--TC--TCC
* *
84174786 GTTCCACTGCAACTTCAGGGAAATAAGATTCGTTACCTTCAGTCTGCTCCACTGTAACTTCAGAG
1 GTTCCACTGCAACTTCAGGGAAATAAGATT-G-TAACTTCAGCCTGCTCCACTGTAACTTCAG-G
* * *
84174851 AGATAAGACTTGTAACTTCAACCTGATCTACTGCAACTTCAGGAAGATAAGGCTTGTGCTTTTAA
63 AGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTGC-TTTAA
* *
84174916 TCTGCTCCACTGCAACTTCAGGGAGATAATATTTGCTTTAATGATT-TT-AATCCAT-C-CTACT
127 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG---TAATGATTATTCAA-CC-TGCTCCACT
* *
84174977 GCAACTTCAGATGAATAAGATTCGCTATTCTTAGTCTGC
187 GCAACTTCAGAGGAATAAGATTCGCTATTCTTAGTCTCC
* * *
84175016 -TT-CACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGAA
1 GTTCCACTGCAACTTCAGGGAAATAAGA-TTGTAACTTCAGCCTGCTCCACTGTAACTTCAGG-A
* * * *
84175079 GATAAGGCTTGTAACTTCAACTTGCTCCACTGTAACTTCAGGGAGATAAGGCTTGTGACTTCAA-
64 GATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTG-CTTTAAT
*
84175143 CTTGCTCCACTGTAACTTCAGGGAGATAAG
128 C-TGCTCCACTGCAACTTCAGGGAGATAAG
84175173 GCTTGTGACT
Statistics
Matches: 335, Mismatches: 36, Indels: 39
0.82 0.09 0.10
Matches are distributed among these distances:
226 2 0.01
227 108 0.32
228 25 0.07
229 4 0.01
230 2 0.01
232 2 0.01
233 6 0.02
234 170 0.51
235 9 0.03
236 1 0.00
237 6 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (225 bp):
GTTCCACTGCAACTTCAGGGAAATAAGATTGTAACTTCAGCCTGCTCCACTGTAACTTCAGGAGA
TAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTGCTTTAATCTG
CTCCACTGCAACTTCAGGGAGATAAGATTTGTAATGATTATTCAACCTGCTCCACTGCAACTTCA
GAGGAATAAGATTCGCTATTCTTAGTCTCC
Found at i:84175030 original size:183 final size:183
Alignment explanation
Indices: 84174725--84175127 Score: 516
Period size: 183 Copynumber: 2.2 Consensus size: 183
84174715 TGTCATGGTT
* ** * *
84174725 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG---TAATTTGTAGCTTCAATCCG
1 ACTTCAACTTGCTCCACTGCAACTTCAGGGAGATAATATTTGCTTTAA--TG-A-TTTTAATCC-
* * *
84174787 TTCC-ACTGCAACTTCAGGGAAATAAGATTCGTTACCTTCAGTCTGCTCCACTGTAACTTCAGAG
61 ATCCTACTGCAACTTCAGGGAAATAAGATTCGCTACCTTCAGTCTGCTCCACTGCAACTTCAGAG
*
84174851 AGATAAGACTTGTAACTTCAACCTGATCTACTGCAACTTCAGGAAGATAAGGCTTGT-
126 AGATAAGACTTGTAACTTCAACCTGATCCACTGCAACTTCAGGAAGATAAGGCTTGTA
* *
84174908 GCTTTTAA-TCTGCTCCACTGCAACTTCAGGGAGATAATATTTGCTTTAATGATTTTAATCCATC
1 AC-TTCAACT-TGCTCCACTGCAACTTCAGGGAGATAATATTTGCTTTAATGATTTTAATCCATC
* * * *
84174972 CTACTGCAACTTCAGATG-AATAAGATTCGCTATTCTT-AGTCTGCTTCACTGCAACTTCAGGGA
64 CTACTGCAACTTCAG-GGAAATAAGATTCGCTA-CCTTCAGTCTGCTCCACTGCAACTTCAGAGA
*
84175035 GATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGAAGATAAGGCTTGTA
127 GATAAGACTTGTAACTTCAACCTGATCCACTGCAACTTCAGGAAGATAAGGCTTGTA
*
84175092 ACTTCAACTTGCTCCACTGTAACTTCAGGGAGATAA
1 ACTTCAACTTGCTCCACTGCAACTTCAGGGAGATAA
84175128 GGCTTGTGAC
Statistics
Matches: 191, Mismatches: 19, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
182 3 0.02
183 141 0.74
184 42 0.22
185 2 0.01
187 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (183 bp):
ACTTCAACTTGCTCCACTGCAACTTCAGGGAGATAATATTTGCTTTAATGATTTTAATCCATCCT
ACTGCAACTTCAGGGAAATAAGATTCGCTACCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATA
AGACTTGTAACTTCAACCTGATCCACTGCAACTTCAGGAAGATAAGGCTTGTA
Found at i:84175376 original size:46 final size:45
Alignment explanation
Indices: 84175322--84175418 Score: 158
Period size: 46 Copynumber: 2.1 Consensus size: 45
84175312 TTGTAATTTC
*
84175322 TTTCATCCATCCCACTGCAACTCAGAGGTATAGGATTTGTATCAT
1 TTTCATCCATCCCACTGCAACTCAAAGGTATAGGATTTGTATCAT
*
84175367 TTTCTATCCATCCCACTGCAAGTCAAAGGTATAGGATTTGTATCAT
1 TTTC-ATCCATCCCACTGCAACTCAAAGGTATAGGATTTGTATCAT
*
84175413 CTTCAT
1 TTTCAT
84175419 TGATCTATTG
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
45 6 0.12
46 42 0.88
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (45 bp):
TTTCATCCATCCCACTGCAACTCAAAGGTATAGGATTTGTATCAT
Found at i:84181643 original size:27 final size:26
Alignment explanation
Indices: 84181611--84181757 Score: 119
Period size: 26 Copynumber: 5.7 Consensus size: 26
84181601 TGCAACAATA
84181611 TTAAAATAAATAATATACAAAGAAAT
1 TTAAAATAAATAATATACAAAGAAAT
* *
84181637 TTAAAAATAAATGATATAC-AAGACACT
1 TT-AAAATAAATAATATACAAAGA-AAT
* * *
84181664 TTAAAAT-GA-CATATA-AAAG-AGT
1 TTAAAATAAATAATATACAAAGAAAT
*
84181686 TTAAAATAAATAATATGTAAAAGAGAAAT
1 TTAAAATAAATAATA--TACAA-AGAAAT
*
84181715 TTAAAATAAATAATGTACAAA-AACAGT
1 TTAAAATAAATAATATACAAAGAA-A-T
84181742 TT-AAATAAATAATATA
1 TTAAAATAAATAATATA
84181758 TCTATATAAA
Statistics
Matches: 98, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
22 9 0.09
23 1 0.01
24 11 0.11
25 3 0.03
26 28 0.29
27 28 0.29
28 2 0.02
29 16 0.16
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (26 bp):
TTAAAATAAATAATATACAAAGAAAT
Found at i:84181659 original size:26 final size:28
Alignment explanation
Indices: 84181605--84181790 Score: 92
Period size: 27 Copynumber: 6.8 Consensus size: 28
84181595 AATATGTGCA
84181605 ACAATATT-AAAATAAATAATATACAAAG
1 ACAAT-TTAAAAATAAATAATATACAAAG
*
84181633 A-AATTTAAAAATAAATGATATAC-AAG
1 ACAATTTAAAAATAAATAATATACAAAG
* * *
84181659 ACACTTT-AAAAT-GA-CATATA-AAAG
1 ACAATTTAAAAATAAATAATATACAAAG
*
84181683 --AGTTT-AAAATAAATAATATGTA-AAAG
1 ACAATTTAAAAATAAATAATA--TACAAAG
* * *
84181709 AGAAATTT-AAAATAAATAATGTACAAAA
1 A-CAATTTAAAAATAAATAATATACAAAG
* * *
84181737 ACAGTTTAAATAAATAATATATCTATATAAAG
1 ACAATTT-AA-AAATAA-ATA-ATATACAAAG
* *
84181769 ATAA-TTCAAAATAAATAATATA
1 ACAATTTAAAAATAAATAATATA
84181791 TATAAAAGTT
Statistics
Matches: 122, Mismatches: 20, Indels: 33
0.70 0.11 0.19
Matches are distributed among these distances:
22 9 0.07
23 1 0.01
24 11 0.09
25 1 0.01
26 17 0.14
27 32 0.26
28 8 0.07
29 23 0.19
30 7 0.06
31 5 0.04
32 8 0.07
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.28
Consensus pattern (28 bp):
ACAATTTAAAAATAAATAATATACAAAG
Found at i:84182957 original size:13 final size:14
Alignment explanation
Indices: 84182939--84182970 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
84182929 TTGCTATTGT
84182939 TTCTTCTGCTTGG-
1 TTCTTCTGCTTGGC
84182952 TTCTTCTGCTTGGC
1 TTCTTCTGCTTGGC
84182966 TTCTT
1 TTCTT
84182971 GCGTGTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.00, C:0.25, G:0.19, T:0.56
Consensus pattern (14 bp):
TTCTTCTGCTTGGC
Found at i:84193059 original size:20 final size:18
Alignment explanation
Indices: 84193018--84193060 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
84193008 CTTTTTTTTC
* *
84193018 TTTTTAATTTTTAATATT
1 TTTTTAATTTTGAATATG
84193036 TTTTTGAATGTTTGAATATG
1 TTTTT-AAT-TTTGAATATG
84193056 TTTTT
1 TTTTT
84193061 TTAAATGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 3 0.14
20 13 0.62
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.67
Consensus pattern (18 bp):
TTTTTAATTTTGAATATG
Found at i:84197418 original size:13 final size:13
Alignment explanation
Indices: 84197400--84197433 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
84197390 TTAATTGAGA
* *
84197400 AATTAATTTAGTT
1 AATTAAATTAATT
84197413 AATTAAATTAATT
1 AATTAAATTAATT
84197426 AATTAAAT
1 AATTAAAT
84197434 AATATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
AATTAAATTAATT
Found at i:84209533 original size:40 final size:40
Alignment explanation
Indices: 84209478--84209694 Score: 389
Period size: 40 Copynumber: 5.4 Consensus size: 40
84209468 TGTGCATAGT
*
84209478 ATTCGTGCGGGTTATTGTAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
84209518 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
* *
84209558 ATTCGTGCGGGTTATTATAACCGGGGTAAGTCCCAAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
84209598 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
84209638 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
*
84209678 ATTCGTGCTGGTTATTA
1 ATTCGTGCGGGTTATTA
84209695 CATCCGAGCC
Statistics
Matches: 171, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
Found at i:84213985 original size:10 final size:10
Alignment explanation
Indices: 84213970--84213996 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
84213960 TCACAGATCA
84213970 CTCTCTCGCT
1 CTCTCTCGCT
84213980 CTCTCTCGCT
1 CTCTCTCGCT
84213990 CTCTCTC
1 CTCTCTC
84213997 TCCCCCTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.52, G:0.07, T:0.41
Consensus pattern (10 bp):
CTCTCTCGCT
Found at i:84219653 original size:2 final size:2
Alignment explanation
Indices: 84219646--84219678 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
84219636 CCCCCGCATA
84219646 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
84219679 CCTTTTTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:84220852 original size:31 final size:31
Alignment explanation
Indices: 84220799--84220857 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
84220789 TATTTGAGTT
*
84220799 AATTAAGTTATTCGGATCAACTCGAATAAAA
1 AATTAAGTTATTCGGATCAACTCAAATAAAA
* * *
84220830 AATTAAGTTTTTCGGTTTAACTCAAATA
1 AATTAAGTTATTCGGATCAACTCAAATA
84220858 TGAATTACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.36
Consensus pattern (31 bp):
AATTAAGTTATTCGGATCAACTCAAATAAAA
Found at i:84221513 original size:14 final size:15
Alignment explanation
Indices: 84221479--84221515 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
84221469 ACTAAACTGC
84221479 ACAAAAAAGGTTTAA
1 ACAAAAAAGGTTTAA
84221494 ACAAAAAAGGTTTAA
1 ACAAAAAAGGTTTAA
84221509 A-AAAAAA
1 ACAAAAAA
84221516 ACTCTCTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (15 bp):
ACAAAAAAGGTTTAA
Found at i:84227611 original size:21 final size:21
Alignment explanation
Indices: 84227574--84227622 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
84227564 TTTGAACATT
*
84227574 TAAATTTTATTTAATATTTTTA
1 TAAATTTTATATAATA-TTTTA
84227596 TAAATTTTA-ATAATATTTTA
1 TAAATTTTATATAATATTTTA
*
84227616 TAGATTT
1 TAAATTT
84227623 ACAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.44
21 5 0.20
22 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAAATTTTATATAATATTTTA
Found at i:84227612 original size:28 final size:28
Alignment explanation
Indices: 84227581--84227655 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 28
84227571 ATTTAAATTT
*
84227581 TATTTAATATTTTTATAAATTTTAATAA
1 TATTTAATATTTTTATAAATTTTAAAAA
* ** *
84227609 TATTTTATAGATTTACAAATTTTAAAAA
1 TATTTAATATTTTTATAAATTTTAAAAA
* * *
84227637 AATTAAATCTTTTT-TAAAT
1 TATTTAATATTTTTATAAAT
84227656 ATTTTTAATT
Statistics
Matches: 35, Mismatches: 12, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
27 4 0.11
28 31 0.89
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (28 bp):
TATTTAATATTTTTATAAATTTTAAAAA
Found at i:84227713 original size:39 final size:38
Alignment explanation
Indices: 84227628--84227713 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 38
84227618 GATTTACAAA
* * *
84227628 TTTTAAAAAAATTAAATCTTTTTTAAATATTTTTAATT
1 TTTTAAAAAAATGAAATATTCTTTAAATATTTTTAATT
** * *
84227666 TTCCAAAAAAATGAAATATTCCTTTAAATTTTTTTATTT
1 TTTTAAAAAAATGAAATATT-CTTTAAATATTTTTAATT
84227705 TTTTAAAAA
1 TTTTAAAAA
84227714 TTAATTTTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
38 16 0.42
39 22 0.58
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (38 bp):
TTTTAAAAAAATGAAATATTCTTTAAATATTTTTAATT
Found at i:84234582 original size:16 final size:18
Alignment explanation
Indices: 84234548--84234585 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
84234538 ATCCTTATTT
*
84234548 AAATAAAATATAATGGTA
1 AAATAAAATATAATAGTA
84234566 AAATAAAATA-AA-AGTA
1 AAATAAAATATAATAGTA
84234582 AAAT
1 AAAT
84234586 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAATAGTA
Found at i:84242895 original size:51 final size:51
Alignment explanation
Indices: 84242836--84242955 Score: 168
Period size: 51 Copynumber: 2.4 Consensus size: 51
84242826 TTTTCTCTAG
* *
84242836 TTAATTTAAATTAATTAAAAGATAGATAATAAAAAATTATATCATCACTAA
1 TTAATTTAAATTAATTAAAAGATAAATAATAAAAAAATATATCATCACTAA
* * *
84242887 TTAATTTAAACTAATTAAAAGATAAATAATAAAAAAATATATTATCATTAA
1 TTAATTTAAATTAATTAAAAGATAAATAATAAAAAAATATATCATCACTAA
* * *
84242938 ATAAATTAAATTATTTAA
1 TTAATTTAAATTAATTAA
84242956 GTGATAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.37
Consensus pattern (51 bp):
TTAATTTAAATTAATTAAAAGATAAATAATAAAAAAATATATCATCACTAA
Found at i:84248406 original size:31 final size:33
Alignment explanation
Indices: 84248354--84248424 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 33
84248344 TAATAATTTG
*
84248354 ATATAAAT-ATATATATAATTATTCTT-TAACAT
1 ATATAATTAATATATATAATTATT-TTATAACAT
*
84248386 ATATAATTAATATA-AT-ATTATTTTATAATAT
1 ATATAATTAATATATATAATTATTTTATAACAT
84248417 A-ATAATTA
1 ATATAATTA
84248425 GACTGAGCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
30 9 0.26
31 12 0.34
32 9 0.26
33 5 0.14
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (33 bp):
ATATAATTAATATATATAATTATTTTATAACAT
Found at i:84252379 original size:21 final size:21
Alignment explanation
Indices: 84252330--84252379 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
84252320 GTAATTAGTT
* *
84252330 AACCCTAAATCTCGAACCTTG
1 AACCTTAAATCTCGAACCTCG
** *
84252351 AATATTAAATCTTGAACCTCG
1 AACCTTAAATCTCGAACCTCG
84252372 AACCTTAA
1 AACCTTAA
84252380 GGTTCAGGGT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (21 bp):
AACCTTAAATCTCGAACCTCG
Found at i:84252419 original size:27 final size:27
Alignment explanation
Indices: 84252376--84252427 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
84252366 ACCTCGAACC
*
84252376 TTAAGGTTCAGGGTTTGGGTTTGGGAT
1 TTAAGGTTCAGGATTTGGGTTTGGGAT
*
84252403 TTAAGGTTCATGATTTGGGTTTGGG
1 TTAAGGTTCAGGATTTGGGTTTGGG
84252428 TTTTGAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.04, G:0.38, T:0.42
Consensus pattern (27 bp):
TTAAGGTTCAGGATTTGGGTTTGGGAT
Found at i:84252558 original size:21 final size:20
Alignment explanation
Indices: 84252525--84252563 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
84252515 AAGGTTCAAG
84252525 GGTTCGAGATTATGAGTTTGA
1 GGTTCGAGATTAT-AGTTTGA
* *
84252546 GGTTCGGGTTTATAGTTT
1 GGTTCGAGATTATAGTTT
84252564 AAGATTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.05, G:0.33, T:0.44
Consensus pattern (20 bp):
GGTTCGAGATTATAGTTTGA
Found at i:84254110 original size:22 final size:23
Alignment explanation
Indices: 84254071--84254116 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
84254061 AAATATCAAT
*
84254071 TTATTATTTAAGTCTATATTATA
1 TTATTATTTAAGTCTATATGATA
* *
84254094 TTATT-TTTAATTTTATATGATA
1 TTATTATTTAAGTCTATATGATA
84254116 T
1 T
84254117 AAATAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (23 bp):
TTATTATTTAAGTCTATATGATA
Found at i:84255447 original size:39 final size:39
Alignment explanation
Indices: 84255404--84255536 Score: 115
Period size: 39 Copynumber: 3.3 Consensus size: 39
84255394 GCGTTTAATG
* *
84255404 AAAACGCCACTAAAGGTCGAGCATTAGCGGCGCTTTTTA
1 AAAACGCCGCTAAAGGTCAAGCATTAGCGGCGCTTTTTA
* ** * * *
84255443 AAAACACCGCTATAA-GTTTACCTTTAGCGGCGTTTTTTGA
1 AAAACGCCGCTA-AAGGTCAAGCATTAGCGGCGCTTTTT-A
* * * *
84255483 AAAGCGCCGCTAAAGATCAAGTATTAGCGGCGCCTTTTAAA
1 AAAACGCCGCTAAAGGTCAAGCATTAGCGGCG-CTTTT-TA
84255524 AAAACGCCGCTAA
1 AAAACGCCGCTAA
84255537 TGCTCGATCT
Statistics
Matches: 71, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
39 30 0.42
40 24 0.34
41 17 0.24
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (39 bp):
AAAACGCCGCTAAAGGTCAAGCATTAGCGGCGCTTTTTA
Found at i:84255976 original size:15 final size:14
Alignment explanation
Indices: 84255956--84255990 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
84255946 ACTATTTTAA
84255956 GGTTTATGGATTAT
1 GGTTTATGGATTAT
84255970 GGGTTTATGGATTAT
1 -GGTTTATGGATTAT
84255985 GGTTTA
1 GGTTTA
84255991 AGGGTGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:84255976 original size:22 final size:22
Alignment explanation
Indices: 84255951--84255995 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
84255941 GAGTTACTAT
* *
84255951 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAAGGG
* *
84255973 TTTATGGATTATGGTTTAAGGG
1 TTTAAGGATTATGGATTAAGGG
84255995 T
1 T
84255996 GGTTTAAGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGGATTAAGGG
Found at i:84256039 original size:7 final size:7
Alignment explanation
Indices: 84256029--84256060 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
84256019 TCATTTAGGT
*
84256029 GTTAGGG
1 GTTAAGG
84256036 GTTAAGG
1 GTTAAGG
84256043 GTTAAGG
1 GTTAAGG
84256050 GTTAAGG
1 GTTAAGG
84256057 GTTA
1 GTTA
84256061 GTGGTTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.44, T:0.31
Consensus pattern (7 bp):
GTTAAGG
Found at i:84256242 original size:7 final size:7
Alignment explanation
Indices: 84256227--84256271 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
84256217 TTAATTATCA
*
84256227 TTATAGT
1 TTATGGT
84256234 TTATGGT
1 TTATGGT
84256241 TTATGGT
1 TTATGGT
*
84256248 TTAAGGT
1 TTATGGT
*
84256255 ATATGGT
1 TTATGGT
*
84256262 TTAGGGT
1 TTATGGT
84256269 TTA
1 TTA
84256272 AAGTGTATGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (7 bp):
TTATGGT
Found at i:84256280 original size:21 final size:21
Alignment explanation
Indices: 84256235--84256280 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
84256225 CATTATAGTT
* *
84256235 TATGGTTTATGGTTTAAGGTA
1 TATGGTTTAGGGTTTAAAGTA
*
84256256 TATGGTTTAGGGTTTAAAGTG
1 TATGGTTTAGGGTTTAAAGTA
84256277 TATG
1 TATG
84256281 AGTTACTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAAGTA
Found at i:84256669 original size:21 final size:19
Alignment explanation
Indices: 84256651--84256704 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 19
84256641 TTTAAAAATG
*
84256651 ATAAAAATCTTCAAAAAAA
1 ATAAAAATCTTAAAAAAAA
84256670 ATATAAAAT-TTAAAAATAAAAA
1 ATA-AAAATCTT--AAA-AAAAA
84256692 ATAAAAATCTTAA
1 ATAAAAATCTTAA
84256705 TATATAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
19 5 0.17
20 7 0.24
21 7 0.24
22 10 0.34
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAATCTTAAAAAAAA
Found at i:84256836 original size:21 final size:18
Alignment explanation
Indices: 84256810--84256852 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 18
84256800 TTTAAAAGAA
84256810 AAAAATAGAAAAAAATATATT
1 AAAAAT-GAAAAAAA-AT-TT
84256831 AAAAATGAAAAAAAATTT
1 AAAAATGAAAAAAAATTT
84256849 AAAA
1 AAAA
84256853 TTAAACAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 8 0.36
21 6 0.27
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAAAATGAAAAAAAATTT
Found at i:84262235 original size:42 final size:43
Alignment explanation
Indices: 84262171--84262270 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
84262161 AAGGTCTTTT
** *
84262171 TTTTAGCGGCGTTTTTTATAAAAGCGCCGCT-AAAGGTCAT-AC
1 TTTTAGCGGCGTTTTAGATAAAAACGCCG-TGAAAGGTCATGAC
* *
84262213 TTTTAGTGGCGTTTTAGGTAAAAACGCCGTGAAAGGTCATGAC
1 TTTTAGCGGCGTTTTAGATAAAAACGCCGTGAAAGGTCATGAC
* *
84262256 CTTTAGCGGCATTTT
1 TTTTAGCGGCGTTTT
84262271 TTTCACATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 33 0.69
43 14 0.29
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TTTTAGCGGCGTTTTAGATAAAAACGCCGTGAAAGGTCATGAC
Found at i:84264589 original size:18 final size:20
Alignment explanation
Indices: 84264566--84264611 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
84264556 TCCATGGTAT
*
84264566 AAAATAAAT-AAAATGAT-A
1 AAAATAAATAAAAATAATAA
*
84264584 AAAATACATAAAAATAATAA
1 AAAATAAATAAAAATAATAA
84264604 AAAATAAA
1 AAAATAAA
84264612 GATGCTAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 7 0.30
20 8 0.35
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAATAAAAATAATAA
Found at i:84264705 original size:12 final size:12
Alignment explanation
Indices: 84264681--84264721 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
84264671 GACAAAGTAG
84264681 TAAAAATAA-GA
1 TAAAAATAATGA
84264692 TAAAAATAATGA
1 TAAAAATAATGA
*
84264704 TAATAATAATGAA
1 TAAAAATAATG-A
84264717 TAAAA
1 TAAAA
84264722 TGTATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 9 0.35
12 12 0.46
13 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (12 bp):
TAAAAATAATGA
Found at i:84266667 original size:44 final size:44
Alignment explanation
Indices: 84266595--84267029 Score: 316
Period size: 44 Copynumber: 9.7 Consensus size: 44
84266585 TCATTCAAAC
* * * *
84266595 CCACTGCAACTTCAGGG-GTATAAGATTTGTTGCTTCAATTTGCT
1 CCACTACAACTTTAGGGAG-ATAAGATTTGTAGCTTCAATCTGCT
* * * * *
84266639 CCACTACAATTTTAGAGAGATAAAATTTGCAGCTCCAATCTGCT
1 CCACTACAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * *
84266683 CCACTGCAACTTCAGGGAGATAAGATCTGTAACTTCAATCTGCT
1 CCACTACAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* ** *
84266727 CCACTACAACTTTAGGGAGATAAGATTTATAATTTGTAACTTTGATCTGTT
1 CCACTACAACTTTAGGGAGATAAG-------ATTTGTAGCTTCAATCTGCT
* * * * * * * *
84266778 TCACTACCACTTCAGAGAAATAAGATTTGTTATCTTTAGTCTGCT
1 CCACTACAACTTTAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * * * *
84266823 CCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCC
1 CCACTACAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * *
84266867 CCACTGCAACTTTAGGGAGATAA-AGTTTATAGCTTTAATTTGCT
1 CCACTACAACTTTAGGGAGATAAGA-TTTGTAGCTTCAATCTGCT
* * * * * * *
84266911 CTACTGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTCTGCT
1 CCACTACAACTTTAGGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * * *
84266956 CCACTACAATTTTAAGGAGATAAGATTTGTGGCTTTAATCTGTT
1 CCACTACAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCT
*
84267000 CCACTGCAACTTTAGGGAGATAAGATTTGT
1 CCACTACAACTTTAGGGAGATAAGATTTGT
84267030 CATGATGGCT
Statistics
Matches: 305, Mismatches: 74, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
43 1 0.00
44 200 0.66
45 69 0.23
51 35 0.11
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
CCACTACAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCT
Found at i:84266747 original size:88 final size:88
Alignment explanation
Indices: 84266595--84267028 Score: 350
Period size: 89 Copynumber: 4.8 Consensus size: 88
84266585 TCATTCAAAC
* * * * * *
84266595 CCACTGCAACTTCAGGG-GTATAAGATTTGTTGCTTCAATTTGCTCCACTACAATTTTAGAGAGA
1 CCACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGA
* * *
84266659 TAAAATTTGCAGCTCCAATCTGCT
65 TAAGATTTGCAACTTCAATCTGCT
* * * *
84266683 CCACTGCAACTTCAGGGAGATAAGATCTGTAACTTCAATCTGCTCCACTACAACTTTAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGAT
* ** *
84266748 AAGATTTATAATTTGTAACTTTGATCTGTT
66 AAG-------ATTTGCAACTTCAATCTGCT
* * * * * * * *
84266778 TCACTACCACTTCAGAGAAATAAGATTTGTTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGA
* * * * *
84266843 TAAGACTTGTAACTTTAACCTGCC
65 TAAGATTTGCAACTTCAATCTGCT
* * * * * *
84266867 CCACTGCAACTTTAGGGAGATAA-AGTTTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGA
1 CCACTGCAACTTCAGGGAGATAAGA-TTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGA
* * *
84266931 TAAGATTCGCTATCTTCAGTCTGCT
65 TAAGATTTGC-AACTTCAATCTGCT
* * * * * *
84266956 CCACTACAATTTTAAGGAGATAAGATTTGTGGCTTTAATCTGTTCCACTGCAACTTTAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGAT
84267021 AAGATTTG
66 AAGATTTG
84267029 TCATGATGGC
Statistics
Matches: 274, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
88 97 0.35
89 105 0.38
90 1 0.00
95 37 0.14
96 34 0.12
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (88 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTTAGGGAGAT
AAGATTTGCAACTTCAATCTGCT
Found at i:84266992 original size:133 final size:134
Alignment explanation
Indices: 84266594--84267027 Score: 448
Period size: 133 Copynumber: 3.2 Consensus size: 134
84266584 TTCATTCAAA
* * * * * * *
84266594 CCCACTGCAACTTCAGGG-G-TATAAGATTTGTTGCTTCAATTTGCTCCACTACAATTTTAGAGA
1 CCCACTGCAACTTTAGGGAGATA-AAGATTTATAGCTTTAATTTGCTCTACTACAACTTCAGAGA
* * * * * *
84266657 GATAAAATTTGC-AGCTCCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTAACTTCAA
65 GATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAA
84266721 TCTGC
130 TCTGC
* * ** * *
84266726 TCCACTACAACTTTAGGGAGAT-AAGATTTATAATTTGTAACTTTGATCTGTTTCACTACCACTT
1 CCCACTGCAACTTTAGGGAGATAAAGATTTATAGCTT-TAA-TTTG--C--TCT-ACTACAACTT
* * * *
84266790 CAGAGAAATAAGATTTGTTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAA
59 CAGAGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAA
*
84266855 CTTTAACCTGC
124 CTTTAATCTGC
*
84266866 CCCACTGCAACTTTAGGGAGATAAAG-TTTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAG
1 CCCACTGCAACTTTAGGGAGATAAAGATTTATAGCTTTAATTTGCTCTACTACAACTTCAGAGAG
* * * * * **
84266930 ATAAGATTCGCTATCTTCAGTCTGCTCCACTACAATTTTAAGGAGATAAGATTTGTGGCTTTAAT
66 ATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAAT
*
84266995 CTGT
131 CTGC
*
84266999 TCCACTGCAACTTTAGGGAGAT-AAGATTT
1 CCCACTGCAACTTTAGGGAGATAAAGATTT
84267028 GTCATGATGG
Statistics
Matches: 245, Mismatches: 45, Indels: 23
0.78 0.14 0.07
Matches are distributed among these distances:
132 28 0.11
133 98 0.40
134 7 0.03
136 2 0.01
138 5 0.02
139 25 0.10
140 77 0.31
141 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (134 bp):
CCCACTGCAACTTTAGGGAGATAAAGATTTATAGCTTTAATTTGCTCTACTACAACTTCAGAGAG
ATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTTAAT
CTGC
Found at i:84267144 original size:58 final size:58
Alignment explanation
Indices: 84267048--84267164 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
84267038 CTTTAATCCA
84267048 TCCCACTGTAACTTCAGGGGTATAGGATTTATTATTTCACTGATCTGTTACACTGTTC
1 TCCCACTGTAACTTCAGGGGTATAGGATTTATTATTTCACTGATCTGTTACACTGTTC
* * *
84267106 TCCCACTGTAACTTCAGGGGTATAGGATTTGTTGTTTCACTGATTTGTTACACTGTTC
1 TCCCACTGTAACTTCAGGGGTATAGGATTTATTATTTCACTGATCTGTTACACTGTTC
84267164 T
1 T
84267165 TTGGGGAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (58 bp):
TCCCACTGTAACTTCAGGGGTATAGGATTTATTATTTCACTGATCTGTTACACTGTTC
Found at i:84272680 original size:44 final size:44
Alignment explanation
Indices: 84272608--84273039 Score: 210
Period size: 44 Copynumber: 9.6 Consensus size: 44
84272598 TTATTCTAAC
* * *
84272608 CCACTGCAAGTTCAGAG-GTATAAGATTTGTTGCTTCAATCTGCT
1 CCACTGCAACTTCAGAGAG-ATAAGATTTGTAGCTCCAATCTGCT
*
84272652 CCACTACAACTTCAGAGAGAT-AGAATTTGTAGCTCCAATCTGCT
1 CCACTGCAACTTCAGAGAGATAAG-ATTTGTAGCTCCAATCTGCT
* * * *
84272696 TCACTGTAACTTCAGGGAGATAAGATTTGTAGCTCCAATATGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAGCTCCAATCTGCT
* ** * * * * * * *
84272740 CTACTGCAACTTTGGGGATATAATATTTGCTATCTTCGATCTACT
1 CCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTCCAATCTGCT
** * * * ** *
84272785 TTACTGGAACTTCAGGGAGATAAGATTTGTACTTTGTAGTTTTAATCTGTT
1 CCACTGCAACTTCAGAGAGAT-A-A---G-A-TTTGTAGCTCCAATCTGCT
* * * * * * * * *
84272836 TCACTACCACTTCA-AGGAGATAAGACTTGTAACTTCAACCTACC
1 CCACTGCAACTTCAGA-GAGATAAGATTTGTAGCTCCAATCTGCT
* * **
84272880 CCACTGCAACTTCA-AGGAGATAAGGTTTATAGCTTTAATCTGCT
1 CCACTGCAACTTCAGA-GAGATAAGATTTGTAGCTCCAATCTGCT
** * * * *
84272924 TTACTGTAACATT-AGAGAGATAAGATTTG-ATGTCTTCAGTTTGCT
1 CCACTGCAAC-TTCAGAGAGATAAGATTTGTA-G-CTCCAATCTGCT
* * * * **
84272969 CCACTTCAACTTCAGGGAGATAAGACTTGTGGCTTTAATCTGCT
1 CCACTGCAACTTCAGAGAGATAAGATTTGTAGCTCCAATCTGCT
* *
84273013 CCACTGCAACTTTAGGGAGATAAGATT
1 CCACTGCAACTTCAGAGAGATAAGATT
84273040 CGCCAGATGG
Statistics
Matches: 292, Mismatches: 78, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
43 3 0.01
44 192 0.66
45 63 0.22
46 2 0.01
47 1 0.00
49 1 0.00
50 1 0.00
51 25 0.09
52 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
CCACTGCAACTTCAGAGAGATAAGATTTGTAGCTCCAATCTGCT
Found at i:84275094 original size:37 final size:37
Alignment explanation
Indices: 84275044--84275117 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
84275034 TGCTCAAATT
84275044 TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
1 TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
*
84275081 TTATGTCTTGAATAAAGACCCCAATTTTTGATCTATC
1 TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
84275118 CATAGAACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (37 bp):
TTATGTCTTGAATAAAGACCCCAATTTTCGATCTATC
Found at i:84280468 original size:14 final size:15
Alignment explanation
Indices: 84280434--84280473 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
84280424 TAAAACATTT
84280434 TTTTATA-TATAAAGG
1 TTTTATATTATAAA-G
84280449 TTTTATATTATAAA-
1 TTTTATATTATAAAG
84280463 TTTTATATTAT
1 TTTTATATTAT
84280474 TTTTACTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 11 0.46
15 7 0.29
16 6 0.25
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TTTTATATTATAAAG
Found at i:84285059 original size:23 final size:23
Alignment explanation
Indices: 84285029--84285080 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
84285019 TGCAACTTGG
84285029 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
84285052 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
84285075 TTTCAT
1 TTTCAT
84285081 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:84289512 original size:23 final size:23
Alignment explanation
Indices: 84289482--84289533 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
84289472 TGCAACTTGG
84289482 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
84289505 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
84289528 TTTCAT
1 TTTCAT
84289534 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:84290713 original size:17 final size:18
Alignment explanation
Indices: 84290691--84290725 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
84290681 ATAATAGTAA
*
84290691 TTTAAAT-TTTAATTATT
1 TTTAAATGTGTAATTATT
84290708 TTTAAATGTGTAATTATT
1 TTTAAATGTGTAATTATT
84290726 ATAACTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTAAATGTGTAATTATT
Found at i:84292858 original size:15 final size:16
Alignment explanation
Indices: 84292838--84292880 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
84292828 AATTGATAAA
*
84292838 TTATTTAATTAAA-AT
1 TTATTTAATTAAATAG
*
84292853 TTATTTAACTAAATAG
1 TTATTTAATTAAATAG
*
84292869 TTATTTATTTAA
1 TTATTTAATTAA
84292881 TAGACAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (16 bp):
TTATTTAATTAAATAG
Found at i:84292904 original size:22 final size:21
Alignment explanation
Indices: 84292879--84292922 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
84292869 TTATTTATTT
* *
84292879 AATAGACAATTAAATTTTAAAA
1 AATAAACAAATAAA-TTTAAAA
*
84292901 AATAAATAAATAAATTTAAAA
1 AATAAACAAATAAATTTAAAA
84292922 A
1 A
84292923 GCACCATTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
AATAAACAAATAAATTTAAAA
Found at i:84294471 original size:21 final size:20
Alignment explanation
Indices: 84294417--84294471 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 20
84294407 GTTTTCTGGT
84294417 AAAATATTTAAAAAATTATA
1 AAAATATTTAAAAAATTATA
* *
84294437 ATTAATATAATTAAAATATGTATA
1 A--AA-ATATTTAAAAAAT-TATA
84294461 AAAATATTTAA
1 AAAATATTTAA
84294472 TATTAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 1 0.04
21 7 0.25
22 4 0.14
23 11 0.39
24 5 0.18
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AAAATATTTAAAAAATTATA
Found at i:84294488 original size:25 final size:27
Alignment explanation
Indices: 84294460--84294525 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
84294450 AAATATGTAT
84294460 AAAAATATTTAATATTA-AA-AAATAAA
1 AAAAATATTTAAT-TTAGAAGAAATAAA
84294486 AAAAATATTT-ATTTAGAAGAAAT-AA
1 AAAAATATTTAATTTAGAAGAAATAAA
* *
84294511 AATAATATCTAATTT
1 AAAAATATTTAATTT
84294526 TTAGTAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 3 0.09
25 14 0.40
26 18 0.51
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (27 bp):
AAAAATATTTAATTTAGAAGAAATAAA
Found at i:84296437 original size:32 final size:30
Alignment explanation
Indices: 84296388--84296451 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
84296378 TATTAAAGGT
*
84296388 AAAATTATATTTTATCTTTCTTAAAAATGATA
1 AAAATTATATTTAATC-TT-TTAAAAATGATA
*
84296420 AAAATT-TAATTTAATCTTTTAAAAATTATA
1 AAAATTAT-ATTTAATCTTTTAAAAATGATA
84296450 AA
1 AA
84296452 GATATAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 13 0.45
31 3 0.10
32 13 0.45
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (30 bp):
AAAATTATATTTAATCTTTTAAAAATGATA
Found at i:84299645 original size:3 final size:3
Alignment explanation
Indices: 84299637--84299676 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
84299627 TGGCAATTTG
84299637 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
84299677 ACAAACTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84302988 original size:77 final size:77
Alignment explanation
Indices: 84302901--84303052 Score: 243
Period size: 77 Copynumber: 2.0 Consensus size: 77
84302891 TAGGAGAGTG
* *
84302901 CTAGCTTCATGCTACACTCTATGGGTGC-GATATAGGCTCTATGAGTCAAGTACGGGGCAATGGA
1 CTAGCTTCATGCTACACTCTATGGGT-CTGATAGAGGCTCTATGAGCCAAGTACGGGGCAATGGA
84302965 GATCCTTTCACTA
65 GATCCTTTCACTA
* * *
84302978 CTAGCTTCATGCTACACTTTATGGGTCTGATAGAGGCTCTATGAGCCAAGTACGGGGTAATGTAG
1 CTAGCTTCATGCTACACTCTATGGGTCTGATAGAGGCTCTATGAGCCAAGTACGGGGCAATGGAG
84303043 ATCCTTTCAC
66 ATCCTTTCAC
84303053 AAGTAGCCAA
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
76 1 0.01
77 68 0.99
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (77 bp):
CTAGCTTCATGCTACACTCTATGGGTCTGATAGAGGCTCTATGAGCCAAGTACGGGGCAATGGAG
ATCCTTTCACTA
Found at i:84303615 original size:18 final size:18
Alignment explanation
Indices: 84303551--84303616 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
84303541 GTGTAAATGA
*
84303551 ATAGGCTCACATAAGT-T
1 ATAGGCTCGCATAAGTGT
*
84303568 CATAGGCTCGCACAAGTGT
1 -ATAGGCTCGCATAAGTGT
* *
84303587 TTAAGCTCGCATAAGTGT
1 ATAGGCTCGCATAAGTGT
*
84303605 ATAGGCACGCAT
1 ATAGGCTCGCAT
84303617 GATACTGGGT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
18 38 0.97
19 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (18 bp):
ATAGGCTCGCATAAGTGT
Found at i:84305688 original size:16 final size:16
Alignment explanation
Indices: 84305663--84305696 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84305653 ATGAATATAT
* *
84305663 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
84305679 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
84305695 AT
1 AT
84305697 TGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:84307762 original size:69 final size:69
Alignment explanation
Indices: 84307649--84307785 Score: 247
Period size: 69 Copynumber: 2.0 Consensus size: 69
84307639 TAAGTTAAGA
*
84307649 AAAAAACTAATTTGTTCTTTTTTTTACTTTTTATTTCGACAAATATAAGAAAATAAAATAAGATT
1 AAAAAACTAATTTGTTCTTTTTTTTACTTTTTATTTCGAAAAATATAAGAAAATAAAATAAGATT
84307714 TTAG
66 TTAG
* *
84307718 AAAAAACTAATTTGTTCTTTTTTTTACTTTTTATTTTGAAAAATATAAGAAAATAAAATAAGGTT
1 AAAAAACTAATTTGTTCTTTTTTTTACTTTTTATTTCGAAAAATATAAGAAAATAAAATAAGATT
84307783 TTA
66 TTA
84307786 AACCTTACAC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (69 bp):
AAAAAACTAATTTGTTCTTTTTTTTACTTTTTATTTCGAAAAATATAAGAAAATAAAATAAGATT
TTAG
Found at i:84308096 original size:2 final size:2
Alignment explanation
Indices: 84308091--84308119 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
84308081 TTGAGAGAAA
84308091 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
84308120 ATGTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:84308620 original size:24 final size:24
Alignment explanation
Indices: 84308593--84308657 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
84308583 ACATTTATCC
* *
84308593 TTTTTAATTGTCATATTTTTTTTA
1 TTTTTAATTATCATATTTATTTTA
* *
84308617 TTTTGAATTATCATGTTTATTTTA
1 TTTTTAATTATCATATTTATTTTA
* * *
84308641 TTATTAAATATGATATT
1 TTTTTAATTATCATATT
84308658 ATTATTACCA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.63
Consensus pattern (24 bp):
TTTTTAATTATCATATTTATTTTA
Found at i:84313487 original size:41 final size:41
Alignment explanation
Indices: 84313434--84313550 Score: 155
Period size: 41 Copynumber: 2.9 Consensus size: 41
84313424 CCATCGGTAT
*
84313434 ATCCAC-AGTCGTCAAGCAACCATGCGATCCTTAATCGGTGG
1 ATCCACGA-TCGTCAAGCAACCATGCGATCCTCAATCGGTGG
*
84313475 ATCCACGATCGTCAAGCAACCATGCAATCCTCAATCGGTGG
1 ATCCACGATCGTCAAGCAACCATGCGATCCTCAATCGGTGG
* * * * *
84313516 ATCCATGGTTGTCAAGCACCCATGTGATCCTCAAT
1 ATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
84313551 TTCTTCCTCC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 66 0.99
42 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (41 bp):
ATCCACGATCGTCAAGCAACCATGCGATCCTCAATCGGTGG
Found at i:84313808 original size:27 final size:27
Alignment explanation
Indices: 84313778--84314122 Score: 143
Period size: 27 Copynumber: 12.9 Consensus size: 27
84313768 GTAAATCTAC
84313778 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTGT
* * *
84313805 AAACCAATGGTATTTCTGTAATTTT-T
1 AAACTAAGGGTATTTCAGTAATTTTGT
* *
84313831 AAAAGTCACGGGTATTTC--TAATTTTGT
1 -AAACT-AAGGGTATTTCAGTAATTTTGT
* * *
84313858 AAA-TCAGGGGTATTTCTGTAATTTTCT
1 AAACT-AAGGGTATTTCAGTAATTTTGT
** * **
84313885 AAA-TCAATAGTATTTCAATAATTTTCC
1 AAACT-AAGGGTATTTCAGTAATTTTGT
* * * **
84313912 AAATTAGGGGTATATT-GGTAATTTTAC
1 AAACTAAGGGTAT-TTCAGTAATTTTGT
* * ***
84313939 AAATTGAA-GGTATTTCGGTAATTTCAC
1 AAACT-AAGGGTATTTCAGTAATTTTGT
* * ** **
84313966 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTCAGTAATTTTGT
* **
84313993 AAACTAAGGGTATTT-AGGTATTTTTAC
1 AAACTAAGGGTATTTCA-GTAATTTTGT
* * ** *
84314020 AAACCAGGGGTATTTTGGTAACTTTGCT
1 AAACTAAGGGTATTTCAGTAATTTTG-T
* * **
84314048 -AATTGAGGGTATTTTGGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTGT
* * *
84314074 AAACCAATGGTA-TTCAATAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTGT
*
84314100 AAACCAAGGGTATTTCAGTAATT
1 AAACTAAGGGTATTTCAGTAATT
84314123 CTATCCTATA
Statistics
Matches: 252, Mismatches: 51, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
25 12 0.05
26 37 0.15
27 190 0.75
28 13 0.05
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTGT
Found at i:84314005 original size:54 final size:54
Alignment explanation
Indices: 84313907--84314070 Score: 197
Period size: 54 Copynumber: 3.1 Consensus size: 54
84313897 TTTCAATAAT
* *
84313907 TTTC-CAAATTAGGGGTATATTGGTAATTTTACAAATTGAA-GGTATTTCGGTAA
1 TTTCACAAATTAGGGGTATTTTGGTAATTTTACAAATT-AAGGGTATTTAGGTAA
* *
84313960 TTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTAGGTAT
1 TTTCACAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTAGGTAA
* ** * * * * *
84314014 TTTTACAAACCAGGGGTATTTTGGTAACTTTGCTAATTGAGGGTATTTTGGTAA
1 TTTCACAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTAGGTAA
84314068 TTT
1 TTT
84314071 TGTAAACCAA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 6 0.06
54 89 0.94
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
TTTCACAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTAGGTAA
Found at i:84314099 original size:26 final size:27
Alignment explanation
Indices: 84314065--84314122 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
84314055 GGTATTTTGG
*
84314065 TAATTTTGTAAACCAATGGTA-TTCAA
1 TAATTTTGTAAACCAAGGGTATTTCAA
*
84314091 TAATTTTGTAAACCAAGGGTATTTCAG
1 TAATTTTGTAAACCAAGGGTATTTCAA
84314118 TAATT
1 TAATT
84314123 CTATCCTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (27 bp):
TAATTTTGTAAACCAAGGGTATTTCAA
Found at i:84314141 original size:27 final size:27
Alignment explanation
Indices: 84314104--84314186 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 27
84314094 TTTTGTAAAC
* *
84314104 CAAGGGTATTTCAGTAATTCTATCCTA
1 CAAGGGCATTTCAGTAATTCTACCCTA
* * *
84314131 TAGGGGCATTTTAGTAATTCTACCCTA
1 CAAGGGCATTTCAGTAATTCTACCCTA
* * * *
84314158 CAAGGGTATTTCAATAATACTAGCCTA
1 CAAGGGCATTTCAGTAATTCTACCCTA
84314185 CA
1 CA
84314187 GATATGAGAT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (27 bp):
CAAGGGCATTTCAGTAATTCTACCCTA
Found at i:84317212 original size:41 final size:41
Alignment explanation
Indices: 84317153--84317234 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
84317143 TAAAAGCCAC
*
84317153 CGGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATACGATCCTCAAT
*
84317194 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATACGATCCTCAAT
84317235 TTCTTCCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.22, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATACGATCCTCAAT
Found at i:84317514 original size:27 final size:27
Alignment explanation
Indices: 84317483--84317541 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
84317473 AAGGTGTTTT
84317483 GGTAAATCTACAAACCAAGGGTATTTC
1 GGTAAATCTACAAACCAAGGGTATTTC
* * * *
84317510 GGTAATTTTACAAACTAATGGTATTTC
1 GGTAAATCTACAAACCAAGGGTATTTC
*
84317537 TGTAA
1 GGTAA
84317542 TTTTATAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTAAATCTACAAACCAAGGGTATTTC
Found at i:84317542 original size:27 final size:26
Alignment explanation
Indices: 84317499--84317709 Score: 169
Period size: 27 Copynumber: 7.8 Consensus size: 26
84317489 TCTACAAACC
*
84317499 AAGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTCTGTAATTTTACAAA-T
* *
84317526 AATGGTATTTCTGTAATTTTATAAATT
1 AAGGGTATTTCTGTAATTTTACAAA-T
* * *
84317553 AGGGGTATTTCTATAATTTTCCAAAT
1 AAGGGTATTTCTGTAATTTTACAAAT
*
84317579 CAAGGGTATTTC-GATAATTTTCCAAAT
1 -AAGGGTATTTCTG-TAATTTTACAAAT
*
84317606 TAGAGGTATTT-TGGTAATTTTACAAAT
1 AAG-GGTATTTCT-GTAATTTTACAAAT
* * * * *
84317633 CGATGGTATTTCGGTAATTTCATAAAT
1 -AAGGGTATTTCTGTAATTTTACAAAT
84317660 AATGGGTATTT-TGGTAATTTTACAAACT
1 AA-GGGTATTTCT-GTAATTTTACAAA-T
*
84317688 AGGGGTATTT-TGGTAATTTTAC
1 AAGGGTATTTCT-GTAATTTTAC
84317710 TAATCGAGGC
Statistics
Matches: 150, Mismatches: 24, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
26 4 0.03
27 142 0.95
28 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.43
Consensus pattern (26 bp):
AAGGGTATTTCTGTAATTTTACAAAT
Found at i:84317587 original size:54 final size:54
Alignment explanation
Indices: 84317501--84317765 Score: 213
Period size: 54 Copynumber: 4.9 Consensus size: 54
84317491 TACAAACCAA
* *
84317501 GGGTATTTCGGTAATTTTACAAACTAATGGTATTTCTGTAATTTTATAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCTGTAATTTTATAAATTAG
* * **
84317555 GGGTATTTCT-ATAATTTTCCAAA-TCAAGGGTATTTC-GATAATTTTCCAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACT-AAGGGTATTTCTG-TAATTTTATAAATTAG
* * * * * * *
84317609 AGGTATTTTGGTAATTTTACAAA-TCGATGGTATTTCGGTAATTTCATAAATAAT
1 GGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTCTGTAATTTTATAAATTAG
* *
84317663 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTT-TGGTAATTTTACT-AA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCT-GTAATTTTA-TAAATTAG
* ** ** * *
84317716 AGGCTATTTTGGTAATTTTGTAAACCGAGGGTA-TTCAGTAATTTTGTAAA
1 -GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCTGTAATTTTATAAA
84317766 CCAAGGGTAT
Statistics
Matches: 167, Mismatches: 33, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
52 1 0.01
53 15 0.09
54 148 0.89
55 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCTGTAATTTTATAAATTAG
Found at i:84317723 original size:27 final size:26
Alignment explanation
Indices: 84317608--84317734 Score: 132
Period size: 27 Copynumber: 4.7 Consensus size: 26
84317598 TTCCAAATTA
*
84317608 GAGGTATTTTGGTAATTTTACAAATC
1 GAGGTATTTTGGTAATTTTACTAATC
* *
84317634 GATGGTATTTCGGTAATTTCATAAATAAT-
1 GA-GGTATTTTGGTAATTT--T-ACTAATC
* *
84317663 G-GGTATTTTGGTAATTTTACAAACTA
1 GAGGTATTTTGGTAATTTTACTAA-TC
*
84317689 GGGGTATTTTGGTAATTTTACTAATC
1 GAGGTATTTTGGTAATTTTACTAATC
84317715 GAGGCTATTTTGGTAATTTT
1 GAGG-TATTTTGGTAATTTT
84317735 GTAAACCGAG
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
24 3 0.04
25 2 0.02
26 7 0.08
27 66 0.79
29 2 0.02
30 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.44
Consensus pattern (26 bp):
GAGGTATTTTGGTAATTTTACTAATC
Found at i:84317744 original size:27 final size:27
Alignment explanation
Indices: 84317610--84317777 Score: 119
Period size: 27 Copynumber: 6.3 Consensus size: 27
84317600 CCAAATTAGA
** * *
84317610 GGTATTTTGGTAATTTTACAAATCGAT
1 GGTATTTTGGTAATTTTGTAAACCGAG
* ** **
84317637 GGTATTTCGGTAATTTCATAAA-TAATG
1 GGTATTTTGGTAATTTTGTAAACCGA-G
** *
84317664 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTGTAAACCGA-G
* *
84317691 GGTATTTTGGTAATTTTACT-AATCGAG
1 GGTATTTTGGTAATTTT-GTAAACCGAG
*
84317718 GCTATTTTGGTAATTTTGTAAACCGAG
1 GGTATTTTGGTAATTTTGTAAACCGAG
** *
84317745 GGTA-TTCAGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTGTAAACCGAG
84317771 GGTATTT
1 GGTATTT
84317778 CAGTAATTCT
Statistics
Matches: 114, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 25 0.22
27 87 0.76
28 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTGTAAACCGAG
Found at i:84317748 original size:81 final size:81
Alignment explanation
Indices: 84317479--84317760 Score: 263
Period size: 81 Copynumber: 3.5 Consensus size: 81
84317469 CCACAAGGTG
* * *
84317479 TTTTGGTAAATCTACAAACCAAGGGTATTTCGGTAATTTTACAAACTA-ATGGTATTTCT-GTAA
1 TTTTGGTAATTTTATAAACCAAGGGTATTTCGGTAATTTTACAAACTAGA-GGTATTT-TGGTAA
*
84317542 TTTTA-TAAAT-TAGGGGTA
64 TTTTACT-AATCGA-GGGTA
* ** * * * *
84317560 TTTCT-ATAATTTTCCAAATCAAGGGTATTTCGATAATTTTCCAAATTAGAGGTATTTTGGTAAT
1 TTT-TGGTAATTTTATAAACCAAGGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTGGTAAT
* *
84317624 TTTACAAATCGATGGTA
65 TTTACTAATCGAGGGTA
* * * * *
84317641 TTTCGGTAATTTCATAAA-TAATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAAT
1 TTTTGGTAATTTTATAAACCAA-GGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTGGTAAT
*
84317705 TTTACTAATCGAGGCTA
65 TTTACTAATCGAGGGTA
* * *
84317722 TTTTGGTAATTTTGTAAACCGAGGGTA-TTCAGTAATTTT
1 TTTTGGTAATTTTATAAACCAAGGGTATTTCGGTAATTTT
84317761 GTAAACCAAG
Statistics
Matches: 161, Mismatches: 32, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
80 13 0.08
81 144 0.89
82 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.42
Consensus pattern (81 bp):
TTTTGGTAATTTTATAAACCAAGGGTATTTCGGTAATTTTACAAACTAGAGGTATTTTGGTAATT
TTACTAATCGAGGGTA
Found at i:84317761 original size:26 final size:27
Alignment explanation
Indices: 84317727--84317785 Score: 102
Period size: 26 Copynumber: 2.2 Consensus size: 27
84317717 GGCTATTTTG
*
84317727 GTAATTTTGTAAACCGAGGGTA-TTCA
1 GTAATTTTGTAAACCAAGGGTATTTCA
84317753 GTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTTTGTAAACCAAGGGTATTTCA
84317780 GTAATT
1 GTAATT
84317786 CTACCCTACA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 21 0.68
27 10 0.32
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
GTAATTTTGTAAACCAAGGGTATTTCA
Found at i:84319674 original size:21 final size:21
Alignment explanation
Indices: 84319648--84319692 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
84319638 TGTGGAAAAT
*
84319648 ATTTTGTTATAAAGTGATGTC
1 ATTTTGTTATAAAGTGATGCC
84319669 ATTTTGTTATAAAGTGATGCC
1 ATTTTGTTATAAAGTGATGCC
84319690 ATT
1 ATT
84319693 CGTTAAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.47
Consensus pattern (21 bp):
ATTTTGTTATAAAGTGATGCC
Found at i:84322346 original size:28 final size:28
Alignment explanation
Indices: 84322314--84322418 Score: 165
Period size: 28 Copynumber: 3.8 Consensus size: 28
84322304 CAGAACAAAT
* * *
84322314 ATTGTGACAGAGTCACCAGATACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
84322342 ATTGTGGCAGAGCCACCAGAAACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
*
84322370 TTTGTGGCAGAGCCACCAGAAACAGATA
1 ATTGTGGCAGAGCCACCAGAAACAGATA
*
84322398 TTTGTGGCAGAGCCACCAGAA
1 ATTGTGGCAGAGCCACCAGAA
84322419 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (28 bp):
ATTGTGGCAGAGCCACCAGAAACAGATA
Found at i:84323670 original size:26 final size:25
Alignment explanation
Indices: 84323641--84323703 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
84323631 AGATTCAGCT
*
84323641 ATAGAGGAAAAGAAGAAGAAGAGAAA
1 ATAGA-GAAAAGAAGAAGAAAAGAAA
* *
84323667 ATAGATGAAAAG-AGGAGAAAAGAAG
1 ATAGA-GAAAAGAAGAAGAAAAGAAA
84323692 A-AGAGAAAAGAA
1 ATAGAGAAAAGAA
84323704 TTGTCAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 6 0.19
24 4 0.12
25 11 0.34
26 11 0.34
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (25 bp):
ATAGAGAAAAGAAGAAGAAAAGAAA
Found at i:84326527 original size:25 final size:25
Alignment explanation
Indices: 84326499--84326553 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
84326489 GGACTCACCA
84326499 CAGCTCATATGAGCTTACCA-ATTCT
1 CAGCTCATATGAGCTTACCATATT-T
**
84326524 CAGCTTGTATGAGCTTACCATATTT
1 CAGCTCATATGAGCTTACCATATTT
84326549 CAGCT
1 CAGCT
84326554 TGGAGGAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 24 0.89
26 3 0.11
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (25 bp):
CAGCTCATATGAGCTTACCATATTT
Found at i:84326554 original size:25 final size:25
Alignment explanation
Indices: 84326506--84326567 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
84326496 CCACAGCTCA
84326506 TATGAGCTTACCAATTCTCAGCTTG
1 TATGAGCTTACCAATTCTCAGCTTG
84326531 TATGAGCTTACCATATT-TCAGCTTG
1 TATGAGCTTACCA-ATTCTCAGCTTG
* *
84326556 GAGGAGCTTACC
1 TATGAGCTTACC
84326568 GATTTTGGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 31 0.91
26 3 0.09
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
TATGAGCTTACCAATTCTCAGCTTG
Found at i:84327878 original size:40 final size:39
Alignment explanation
Indices: 84327805--84327897 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 39
84327795 GACTTTATTC
* *
84327805 GGCATTAAATGTGCGATTCAAACAGCTTCGGCTATAAAT-A
1 GGCACTAAGTGTGCGATTCAAACAGCTTCGGCTAT--ATGA
* * *
84327845 -GCACTAAGTGTGCGAGTTCGAATAGCTTTGGCTATATGA
1 GGCACTAAGTGTGCGA-TTCAAACAGCTTCGGCTATATGA
84327884 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
84327898 AATACCGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.04
39 14 0.31
40 29 0.64
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (39 bp):
GGCACTAAGTGTGCGATTCAAACAGCTTCGGCTATATGA
Found at i:84328998 original size:46 final size:47
Alignment explanation
Indices: 84328933--84329149 Score: 257
Period size: 46 Copynumber: 4.7 Consensus size: 47
84328923 TTATCTTTGA
* * * * * *
84328933 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* *
84328979 CATGTTGCCATGGTATCTTTCAA-TATGGTCTTTTTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
84329024 C-TCGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CAT-GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* * * **
84329070 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TGTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
*
84329116 CATGTTGCCATCGTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
84329150 CACATTTCAT
Statistics
Matches: 151, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
44 5 0.03
45 35 0.23
46 111 0.74
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
Found at i:84330984 original size:11 final size:11
Alignment explanation
Indices: 84330968--84331015 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
84330958 CTTTATATAC
84330968 TAATAAAATAA
1 TAATAAAATAA
*
84330979 TAATAAAATATCT
1 TAATAAAATA--A
* *
84330992 TATTAAAATAT
1 TAATAAAATAA
84331003 TAATAAAATAA
1 TAATAAAATAA
84331014 TA
1 TA
84331016 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:84333857 original size:21 final size:21
Alignment explanation
Indices: 84333814--84333861 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
84333804 ACAGCCTGAA
* *
84333814 ACACGAGCGTGTCCCATTACC
1 ACACGGGCGTGTCCCATGACC
* *
84333835 ACACGGGCGTGTCCCCTGGCC
1 ACACGGGCGTGTCCCATGACC
84333856 ACACGG
1 ACACGG
84333862 ACATGTAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.40, G:0.27, T:0.15
Consensus pattern (21 bp):
ACACGGGCGTGTCCCATGACC
Found at i:84335043 original size:31 final size:31
Alignment explanation
Indices: 84335005--84335066 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
84334995 TAAGGTTTCG
*
84335005 GTAGTTAATTGGGTAAAAAGGACTAAATTGA
1 GTAGTTAATTGGGTAAAAAGCACTAAATTGA
84335036 GTAGTTAATTGGGTAAAAAGCACTAAATTGA
1 GTAGTTAATTGGGTAAAAAGCACTAAATTGA
84335067 ATTAAGTGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (31 bp):
GTAGTTAATTGGGTAAAAAGCACTAAATTGA
Found at i:84354986 original size:10 final size:10
Alignment explanation
Indices: 84354971--84355001 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
84354961 AAATATCTAG
84354971 ATTTCTCTTC
1 ATTTCTCTTC
84354981 ATTTCTCTTC
1 ATTTCTCTTC
84354991 ATTTCTCTTC
1 ATTTCTCTTC
84355001 A
1 A
84355002 ATTCCAGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.13, C:0.29, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTCTCTTC
Found at i:84356922 original size:23 final size:23
Alignment explanation
Indices: 84356896--84356940 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
84356886 TGGGTATGTG
*
84356896 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
84356919 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
84356941 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:84359655 original size:43 final size:44
Alignment explanation
Indices: 84359514--84359845 Score: 156
Period size: 50 Copynumber: 7.2 Consensus size: 44
84359504 ATCAATGAAG
* * *
84359514 CTACAATTCCTATA-CTTCTGAAGTTGCAGTGGGTCAGAATAAAA
1 CTACAATTCCTATATC-CCTAAAGTTGCAGTGGATCAGAATAAAA
** * * *
84359558 CTACAATGGCGAATTTTATATCCCTAAAGTTGCAGTGGA-CTAGATTGAAG
1 CTACAAT------TCCTATATCCCTAAAGTTGCAGTGGATC-AGAATAAAA
* *
84359608 CTACAATTCTTATA-CCCTAAAGTTGCAGTAGG-TTAGAATAAAA
1 CTACAATTCCTATATCCCTAAAGTTGCAGT-GGATCAGAATAAAA
* * * * *
84359651 CTACAACATTGAATCCTATATCCCTGAAGTTACAGTGGATCAGATTGAAG
1 CTAC-A-A-T---TCCTATATCCCTAAAGTTGCAGTGGATCAGAATAAAA
* *
84359701 CTACAATTCCTATA-CCCTTGAAGTTGCAATAGG-TCAGAATAAAA
1 CTACAATTCCTATATCCC-TAAAGTTGCAGT-GGATCAGAATAAAA
* * * * * *
84359745 CTACAATGGTGAATCATATATCCCTGAAGTTACAGTGGATCGGATTAAAG
1 CTACAA---T---TCCTATATCCCTAAAGTTGCAGTGGATCAGAATAAAA
* * * *
84359795 CTACAATTCCTATACCCCTAAAGTT-CTAGTGGGTCGGAATGAAA
1 CTACAATTCCTATATCCCTAAAGTTGC-AGTGGATCAGAATAAAA
84359839 CTACAAT
1 CTACAAT
84359846 GGCGAATCTT
Statistics
Matches: 221, Mismatches: 38, Indels: 58
0.70 0.12 0.18
Matches are distributed among these distances:
43 29 0.13
44 82 0.37
45 3 0.01
46 1 0.00
47 3 0.01
48 1 0.00
49 12 0.05
50 86 0.39
51 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (44 bp):
CTACAATTCCTATATCCCTAAAGTTGCAGTGGATCAGAATAAAA
Found at i:84359843 original size:44 final size:44
Alignment explanation
Indices: 84359664--84359845 Score: 104
Period size: 44 Copynumber: 4.0 Consensus size: 44
84359654 CAACATTGAA
* * *
84359664 TCCTATATCCCTGAAGTTACAGTGGATCAGATTG-AAGCTACAAT
1 TCCTATACCCCTAAAGTTACAGTGGATCGGA-TGAAAGCTACAAT
* * * * * *
84359708 TCCTATACCCTTGAAGTTGCAATAGG-TCAGAAT-AAAACTACAATGGT
1 TCCTATACCCCTAAAGTTACAGT-GGATC-GGATGAAAGCTACAA---T
* * * *
84359755 GAATCATATATCCCTGAAGTTACAGTGGATCGGATTAAAGCTACAAT
1 ---TCCTATACCCCTAAAGTTACAGTGGATCGGATGAAAGCTACAAT
*
84359802 TCCTATACCCCTAAAGTT-CTAGTGGGTCGGAATGAAA-CTACAAT
1 TCCTATACCCCTAAAGTTAC-AGTGGATCGG-ATGAAAGCTACAAT
84359846 GGCGAATCTT
Statistics
Matches: 106, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
43 1 0.01
44 61 0.58
45 8 0.08
47 2 0.02
49 5 0.05
50 29 0.27
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (44 bp):
TCCTATACCCCTAAAGTTACAGTGGATCGGATGAAAGCTACAAT
Found at i:84360566 original size:94 final size:94
Alignment explanation
Indices: 84359508--84360558 Score: 702
Period size: 94 Copynumber: 11.2 Consensus size: 94
84359498 GTAATAATCA
* ** * * * *
84359508 ATGAAGCTACAATTCCTATACTTCTGAAGTTGCAGTGGGTCAGAAT-AAAACTACAATGGCGAAT
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATA-TACCATAGCGAAT
* * * *
84359572 TTTATATCCCTAAAGTTGCAGTGGACT-AG
65 CTTATCTCCCTGAAGTTGCAGTGGAGTAAG
* * * * * * * * * **
84359601 ATTGAAGCTACAATTCTTATA-CCCTAAAGTTGCAGTAGGTTAGAAT-AAAACTACAACATTGAA
1 A-TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATA-TACCATAGCGAA
* * * *
84359664 TCCTATATCCCTGAAGTTACAGTGGA-TCAG
64 TCTTATCTCCCTGAAGTTGCAGTGGAGTAAG
* * * * * * * * *
84359694 ATTGAAGCTACAATTCCTATACCCTTGAAGTTGCAATAGGTCAGAAT-AAAACTACAATGGTGAA
1 A-TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATA-TACCATAGCGAA
* * * **
84359758 TCATATATCCCTGAAGTTACAGTGGA-TCGG
64 TCTTATCTCCCTGAAGTTGCAGTGGAGTAAG
* * * * * * *
84359788 ATTAAAGCTACAATTCCTATACCCCTAAAGTT-CTAGTGGGTCGGAATGAA-ACTACAATGGCGA
1 A-TGAAGCTACAAATCCTATACCCCTGAAGTTGC-AGTGGGTCAGATTGAATA-TACCATAGCGA
* * * *
84359851 ATCTTACCTCCCTGAAGTTGCAATAGAGCAAG
63 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAAG
* ** * * * * * * *
84359883 ATGAAGTTATGATTCCTATACCTCTGAAGTTGCAGTAGGTC-GAAAT-AAAACACCAATAACGAA
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAATATACC-ATAGCGAA
* *
84359946 TCCTATATCCCTGAAGTTGCAGTGGA-TCGAA-
64 TCTTATCTCCCTGAAGTTGCAGTGGAGT--AAG
* * * * * * * * *
84359977 TTAAAGCTACAATTCCTACACCCCTGAAGTTGTAGTGGGTCAGATTAAATCTACCATAGTGTATC
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAGCGAATC
* * *
84360042 TTATCTCTCTAAAGTTGCAGTGGAG-CAG
66 TTATCTCCCTGAAGTTGCAGTGGAGTAAG
* * * * * *
84360070 ATTGAAGCTACAAATTCTATA-CCCTAAAGTTACAATGGGTCGGATTGAAGT-TACCATAGCAAA
1 A-TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAA-TATACCATAGCGAA
* *
84360133 TCTTATCTCTCTGAAGTTGTAGTGGAGT-AG
64 TCTTATCTCCCTGAAGTTGCAGTGGAGTAAG
* * * * * * *
84360163 ATGAAGCTATAAATCCTATACCCCTGAAGTTGTAATGGGTCGGATTAAATTTA-CATTAGTGAAT
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCA-TAGCGAAT
* * ** * *
84360227 ATTATCTCTCTGAAGTTATAGTGAAGCGAA-
65 CTTATCTCCCTGAAGTTGCAGTGGAG-TAAG
* * * * * * ***
84360257 ATGAAACTACAAATCATATACCCTTGAAGTTGCAGCGGGTCAGATGGAATCTACCATAATAAATC
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAGCGAATC
* * **
84360322 TTATCTCCCT-AAATATGCAATGGAACAAG
66 TTATCTCCCTGAAGT-TGCAGTGGAGTAAG
* ** * * * *
84360351 ATGAAGCTATAAATCCTATACCTTTAAAGTTGCAGTGGGTCGGATTGAATCTACCATAACGAATC
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAGCGAATC
* * *
84360416 TTATCTCTCTGAAGTTGCAGTAGAGCAAG
66 TTATCTCCCTGAAGTTGCAGTGGAGTAAG
* *
84360445 ATGAAGCTACAAATCATATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAACGAATC
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAGCGAATC
* *
84360510 TTATCTCTCTGAAGATGCAGTGGAGTAAG
66 TTATCTCCCTGAAGTTGCAGTGGAGTAAG
84360539 ATGAAGCTACAAATCCTATA
1 ATGAAGCTACAAATCCTATA
84360559 TCTCTGAAAT
Statistics
Matches: 776, Mismatches: 154, Indels: 55
0.79 0.16 0.06
Matches are distributed among these distances:
92 22 0.03
93 203 0.26
94 532 0.69
95 19 0.02
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (94 bp):
ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATATACCATAGCGAATC
TTATCTCCCTGAAGTTGCAGTGGAGTAAG
Found at i:84360608 original size:94 final size:94
Alignment explanation
Indices: 84360042--84360637 Score: 309
Period size: 94 Copynumber: 6.4 Consensus size: 94
84360032 ATAGTGTATC
* *
84360042 TTATCTCTCTAAAGTTGCAGTGGAGC-AGATTGAAGCTACAAATTC-TATA-CCCT-AAAGTTAC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGA-TGAAGCTACAAA-TCATATACCCCTGAAA-TTAC
* * * * * * *
84360103 AATGGGTCGGATTGAAGT-TACCATAGCAAATC
63 AGTGGATCAGATTGAA-TATACAACAACAAATA
* * * * * * ** *
84360135 TTATCTCTCTGAAGTTGTAGTGGAG-TAGATGAAGCTATAAATCCTATACCCCTGAAGTTGTAAT
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAATTACAGT
* * * * ** ***
84360199 GGGTCGGATTAAATTTACATTAGTGAATA
66 GGATCAGATTGAATATACAACAACAAATA
** * * * *
84360228 TTATCTCTCTGAAGTTATAGT-GAAGCGAA-ATGAAACTACAAATCATATACCCTTGAAGTTGCA
1 TTATCTCTCTGAAGTTGCAGTAG-AGC-AAGATGAAGCTACAAATCATATACCCCTGAAATTACA
* * * * * * * *
84360291 GCGGGTCAGATGGAATCTACCATAATAAATC
64 GTGGATCAGATTGAATATACAACAACAAATA
* * * * * * * * * *
84360322 TTATCTCCCT-AAATATGCAATGGAACAAGATGAAGCTATAAATCCTATA-CCTTTAAAGTTGCA
1 TTATCTCTCTGAAGT-TGCAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAA-TTACA
* * * * * * *
84360385 GTGGGTCGGATTGAATCTACCATAACGAATC
64 GTGGATCAGATTGAATATACAACAACAAATA
* *
84360416 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAGTTGCAGT
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAATTACAGT
* * * * *
84360481 GGGTCAGATTGAATATACCATAACGAATC
66 GGATCAGATTGAATATACAACAACAAATA
* * * * * * *
84360510 TTATCTCTCTGAAGATGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCTCTGAAATTACGGT
1 TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAATTACAGT
* *
84360575 GGAAT-GGATTGAA-ACTACAACAGCAAATA
66 GG-ATCAGATTGAATA-TACAACAACAAATA
* * *
84360604 TTATCT-TCTTGAAGTTGCATTTGAACAAGATGAA
1 TTATCTCTC-TGAAGTTGCAGTAGAGCAAGATGAA
84360638 ACTGTAACAC
Statistics
Matches: 407, Mismatches: 79, Indels: 33
0.78 0.15 0.06
Matches are distributed among these distances:
91 2 0.00
92 17 0.04
93 92 0.23
94 285 0.70
95 11 0.03
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (94 bp):
TTATCTCTCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAATTACAGT
GGATCAGATTGAATATACAACAACAAATA
Found at i:84360897 original size:13 final size:13
Alignment explanation
Indices: 84360867--84360908 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
84360857 TTACCTAGCC
84360867 CAAACAAAT-AAAA
1 CAAA-AAATAAAAA
84360880 C-AAAAATAAAAA
1 CAAAAAATAAAAA
*
84360892 CAAAAAACAAAAA
1 CAAAAAATAAAAA
84360905 CAAA
1 CAAA
84360909 TAAAAGTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 4 0.15
12 7 0.27
13 15 0.58
ACGTcount: A:0.81, C:0.14, G:0.00, T:0.05
Consensus pattern (13 bp):
CAAAAAATAAAAA
Found at i:84363182 original size:17 final size:17
Alignment explanation
Indices: 84363160--84363193 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
84363150 GTGTTAATCG
84363160 GGCATAAATGAACCGAT
1 GGCATAAATGAACCGAT
84363177 GGCATAAATGAACCGAT
1 GGCATAAATGAACCGAT
84363194 CACACCAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
GGCATAAATGAACCGAT
Found at i:84373527 original size:24 final size:24
Alignment explanation
Indices: 84373500--84373552 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
84373490 ATTTATAGGT
* *
84373500 TAAATAAATTATGCTAATAAATGC
1 TAAATAAATTATACTAATAAATAC
*
84373524 TAAATATATTATACTAATAAATAC
1 TAAATAAATTATACTAATAAATAC
84373548 TAAAT
1 TAAAT
84373553 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.36
Consensus pattern (24 bp):
TAAATAAATTATACTAATAAATAC
Found at i:84375690 original size:25 final size:25
Alignment explanation
Indices: 84375640--84375693 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
84375630 ACACACCACA
* *
84375640 GCTCTCATGAGCTTTCCGATACTTG
1 GCTCTCATAAGCTTTCCAATACTTG
*
84375665 GCTCTCATAAGC-TTCTCAATATTTG
1 GCTCTCATAAGCTTTC-CAATACTTG
84375690 GCTC
1 GCTC
84375694 GCAAGCGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.37
Consensus pattern (25 bp):
GCTCTCATAAGCTTTCCAATACTTG
Found at i:84378213 original size:24 final size:24
Alignment explanation
Indices: 84378185--84378236 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
84378175 TTCGTAGGTC
* *
84378185 AAATAAATTAT-GCTAATAAATGCT
1 AAATAAATTATATC-AATAAATACT
*
84378209 AAATATATTATATCAATAAATACT
1 AAATAAATTATATCAATAAATACT
84378233 AAAT
1 AAAT
84378237 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATATCAATAAATACT
Found at i:84381149 original size:18 final size:19
Alignment explanation
Indices: 84381114--84381149 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
84381104 TTACACATAT
84381114 AAAAATCATATTTATTAAA
1 AAAAATCATATTTATTAAA
*
84381133 AAAAATGATATTT-TTAA
1 AAAAATCATATTTATTAA
84381150 TATTTATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
AAAAATCATATTTATTAAA
Found at i:84381209 original size:17 final size:17
Alignment explanation
Indices: 84381189--84381242 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
84381179 TATTAATTAA
*
84381189 AAATATGAATTAAAAAT
1 AAATATTAATTAAAAAT
* **
84381206 AAATATTTATTAATTAT
1 AAATATTAATTAAAAAT
*
84381223 AAACATTAATTAAAAAT
1 AAATATTAATTAAAAAT
84381240 AAA
1 AAA
84381243 AAAACTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
AAATATTAATTAAAAAT
Found at i:84381220 original size:34 final size:34
Alignment explanation
Indices: 84381178--84381242 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
84381168 AATAAAAGAG
*
84381178 TTATTAATTAAAAATATGAATTAAAAATAAATAT
1 TTATTAATTAAAAACATGAATTAAAAATAAATAT
* *
84381212 TTATTAATTATAAACATTAATTAAAAATAAA
1 TTATTAATTAAAAACATGAATTAAAAATAAA
84381243 AAAACTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (34 bp):
TTATTAATTAAAAACATGAATTAAAAATAAATAT
Found at i:84384313 original size:21 final size:21
Alignment explanation
Indices: 84384289--84384342 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
84384279 ACTAATATTA
84384289 CAACCAATATGAATACGAAAG
1 CAACCAATATGAATACGAAAG
* * *
84384310 CAACCATTATAAATATGAAAG
1 CAACCAATATGAATACGAAAG
* *
84384331 CCACCTATATGA
1 CAACCAATATGA
84384343 TCAAGACGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.20
Consensus pattern (21 bp):
CAACCAATATGAATACGAAAG
Found at i:84390548 original size:21 final size:21
Alignment explanation
Indices: 84390522--84390562 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84390512 ATCTGCTCAA
* *
84390522 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
84390543 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
84390563 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:84402719 original size:32 final size:32
Alignment explanation
Indices: 84402683--84402751 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
84402673 GTGGTTGGTT
*
84402683 GTGTTTTGGTGGGAGCAGCAGCAAACCCGGTC
1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
*
84402715 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTG
1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
84402747 GTGTT
1 GTGTT
84402752 AGCAAACCCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.39, T:0.23
Consensus pattern (32 bp):
GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
Found at i:84402757 original size:18 final size:18
Alignment explanation
Indices: 84402734--84402769 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
84402724 TGGGAGCAGC
84402734 AGCAAACCCGGTGGTGTT
1 AGCAAACCCGGTGGTGTT
84402752 AGCAAACCCGGTGGTGTT
1 AGCAAACCCGGTGGTGTT
84402770 TAAGTGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (18 bp):
AGCAAACCCGGTGGTGTT
Found at i:84406019 original size:33 final size:33
Alignment explanation
Indices: 84405945--84406027 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 33
84405935 ATAAGGTTTT
* *
84405945 ATGATTAACAAA-AGAGATTTTCCTTTTTCGATA
1 ATGATTAACAAATAGAGAGTTCCCTTTTTC-ATA
84405978 ATGATTAACAAATAGAGAGTTCCCTTTTT-ATTA
1 ATGATTAACAAATAGAGAGTTCCCTTTTTCA-TA
84406011 AT-AGTTAAC-AATAGAGA
1 ATGA-TTAACAAATAGAGA
84406028 TGTAGATGCA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
32 10 0.22
33 21 0.47
34 14 0.31
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGATTAACAAATAGAGAGTTCCCTTTTTCATA
Done.