Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 26 of 320
Found at i:7300952 original size:59 final size:56
Alignment explanation
Indices: 7300887--7301072 Score: 144
Period size: 59 Copynumber: 3.1 Consensus size: 56
7300877 ATGATAAATT
*
7300887 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTTATTAA--TATATTTAATAATAATTAT-TTAAATTATATTTTATAGTATC
* * * * * *
7300946 ATATATTATGATT-TTAAAAAATTCATATAAGAA-TATTTAATATTCTTAATTTTATTA-AATC
1 ATATATT-T--TTATTAATATATTTA-ATAATAATTATTTAA-ATT-AT-ATTTTA-TAGTATC
* *
7301007 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTTATT--AATATATTTAATAATAATTATTT-AAATTATATTTTATAGTATC
7301066 ATATATT
1 ATATATT
7301073 ATGATTTGAG
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 7 0.07
59 36 0.37
60 15 0.15
61 34 0.35
62 6 0.06
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (56 bp):
ATATATTTTTATTAATATATTTAATAATAATTATTTAAATTATATTTTATAGTATC
Found at i:7301094 original size:120 final size:122
Alignment explanation
Indices: 7300880--7301170 Score: 426
Period size: 120 Copynumber: 2.4 Consensus size: 122
7300870 TAGTATGATG
* **
7300880 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * * ***
7300945 TATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTCTTAATTTTA-T
66 CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
7301001 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
** *
7301064 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
7301122 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
7301171 ATATGATTAA
Statistics
Matches: 150, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
119 2 0.01
120 102 0.68
121 1 0.01
122 43 0.29
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:7301149 original size:18 final size:19
Alignment explanation
Indices: 7301114--7301150 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7301104 ATTATTAAGA
7301114 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
7301133 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
7301151 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:7301637 original size:16 final size:16
Alignment explanation
Indices: 7301597--7301651 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
7301587 TTAATCATAT
*
7301597 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
7301613 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
7301628 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
7301646 -TAAAAT
1 TTAAAAT
7301652 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:7301644 original size:18 final size:17
Alignment explanation
Indices: 7301617--7301651 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7301607 TTTTTATTAA
*
7301617 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7301635 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7301652 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7301761 original size:120 final size:114
Alignment explanation
Indices: 7301565--7302250 Score: 654
Period size: 120 Copynumber: 5.8 Consensus size: 114
7301555 TAATAAGATT
* * *
7301565 ATTATTATCAATAATAAATAATTT--AATCAT-ATTTAAACATAATTTTTATTAAATATATTTTA
1 ATTATTAT-AACAATAAATAATTTAAAAT-ATAATTTAAA-ATAATTATTATTAAATATAATTTA
* * *
7301627 ATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATT-TGT-TTTGGTAA
63 ATAAAAATATATAATTTAATAAAATTCTTAAT-ATTA--A-ATATTCT-TATAT-G-AA
* *
7301684 ATTATTATTAACAATAAATAATTTAAAAGATAATTTAACATAATTATTATTAAATATAATTTAAT
1 ATTATTA-TAACAATAAATAATTTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
7301749 AAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAA
65 AAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAA
* * * * *
7301799 TTTAATAAAATTATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAAT
1 ATT-AT--TATAACAATAAATAAT--T-TAAAATATAATTTAAAATAATTATTATTAAATATAAT
* *
7301864 TTAATAGAAATATATAATTTAATAAAATTCTTAATATTTAAATATTCTTAAATGAA
60 TTAATAAAAATATATAATTTAATAAAATTCTTAATA-TTAAATATTCTTATATGAA
* * * *
7301920 TTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAAT
1 ATTATTATAA-C--AATAAATAAT--T-TAAAATATAATTTAAAATAATTATTATTAAATATAAT
* *
7301985 TTAACAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAA
60 TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAA
* * * *
7302040 TTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAAATATA
1 ATTATTATAA-C--AATAAATAAT--T-TAAAATATAATTTAAAATAATTATTATT--AAATATA
*
7302105 ATTTAGTAAAAATATATAATTTAATAAAATTCTTTAATATT-AA-ATTC-T-TA-GAA
58 ATTTAATAAAAATATATAATTTAATAAAATTC-TTAATATTAAATATTCTTATATGAA
* * * * * *
7302158 TTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAATTAATTATTTTTAAATATAAT
1 ATTATTATAA-C--AATAAATAAT--T-TAAAATATAATTTAAAATAATTATTATTAAATATAAT
*
7302223 TTAATAAAAATATATAATTTAATCAAAT
60 TTAATAAAAATATATAATTTAATAAAAT
7302251 CATTATATTC
Statistics
Matches: 517, Mismatches: 31, Indels: 41
0.88 0.05 0.07
Matches are distributed among these distances:
115 4 0.01
116 43 0.08
117 15 0.03
118 60 0.12
119 27 0.05
120 203 0.39
121 118 0.23
122 39 0.08
123 8 0.02
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (114 bp):
ATTATTATAACAATAAATAATTTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATA
AAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAA
Found at i:7301812 original size:19 final size:18
Alignment explanation
Indices: 7301737--7301892 Score: 77
Period size: 18 Copynumber: 8.0 Consensus size: 18
7301727 TTATTATTAA
*
7301737 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAATT
7301755 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
7301773 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
7301792 ATATGAATTTAATAAAATT
1 ATAT-AATTTAATAAAATT
* *
7301811 ATA-ATATATAATACTATAA-A
1 ATATA-ATTTAATA--A-AATT
7301831 ATATAATTTAAAATAATTATTATT
1 ATATAATTT--AATAA--A--ATT
7301855 AAATATAATTTAATAGAAA-T
1 --ATATAATTTAATA-AAATT
7301875 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
7301893 CTTAATATTT
Statistics
Matches: 106, Mismatches: 13, Indels: 38
0.68 0.08 0.24
Matches are distributed among these distances:
17 8 0.08
18 41 0.39
19 16 0.15
20 12 0.11
21 9 0.08
22 4 0.04
23 2 0.02
24 4 0.04
25 1 0.01
26 9 0.08
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (18 bp):
ATATAATTTAATAAAATT
Found at i:7301845 original size:22 final size:23
Alignment explanation
Indices: 7301803--7301845 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7301793 TATGAATTTA
*
7301803 ATAAAATTATAATATATAATACT
1 ATAAAATTATAATATAAAATACT
*
7301826 ATAAAA-TATAATTTAAAATA
1 ATAAAATTATAATATAAAATA
7301846 ATTATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAAAATTATAATATAAAATACT
Found at i:7301961 original size:121 final size:120
Alignment explanation
Indices: 7301707--7302250 Score: 918
Period size: 120 Copynumber: 4.5 Consensus size: 120
7301697 ATAAATAATT
* *
7301707 TAAAAGATAATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
* * *
7301772 TCTTAATATTAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTA
66 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
*
7301827 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAGAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
7301892 TCTTAATATTTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
66 TCTTAATA-TTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
*
7301948 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
7302013 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
66 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
*
7302068 TAAAATATAATTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAA
1 TAAAATATAATTTAAAATAATTATTATT--AAATATAATTTAATAAAAATATATAATTTAATAAA
7302133 ATTCTTTAATATT-AA-ATTCTT--A-GAATTTACTAAAATCATAATATATAATACTA
64 ATTC-TTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
* * *
7302186 TAAAATATAATTTAAATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTTAATCAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
7302251 CATTATATTC
Statistics
Matches: 406, Mismatches: 14, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
116 35 0.09
118 57 0.14
119 1 0.00
120 145 0.36
121 121 0.30
122 39 0.10
123 8 0.02
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (120 bp):
TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
Found at i:7302018 original size:241 final size:237
Alignment explanation
Indices: 7301707--7302250 Score: 912
Period size: 241 Copynumber: 2.3 Consensus size: 237
7301697 ATAAATAATT
* *
7301707 TAAAAGATAATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
* *
7301772 TCTTAATATTAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTATAAAATATAA
66 TCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATATAATACTATAAAATATAA
*
7301837 TTTAAAATAATTATTATT-AAATATAATTTAATAGAAATATATAATTTAATAAAATTC-TTAATA
131 TTTAAAATAATTATTATTAAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTTAATA
7301900 TTTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
196 -TT-AA-ATTCTT--A-GAATTTACTAAAATCATAATATATAATACTA
*
7301948 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
*
7302013 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 TCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATATAATACTATAAAATATAA
*
7302078 TTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCTTTAAT
131 TTTAAAATAATTATTATT-AAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTTAAT
7302143 ATTAAATTCTTAGAATTTACTAAAATCATAATATATAATACTA
195 ATTAAATTCTTAGAATTTACTAAAATCATAATATATAATACTA
* * *
7302186 TAAAATATAATTTAAATTAATTATTTTTAAATATAATTTAATAAAAATATATAATTTAATCAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
7302251 CATTATATTC
Statistics
Matches: 288, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
238 92 0.32
239 1 0.00
241 148 0.51
242 2 0.01
243 39 0.14
244 6 0.02
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (237 bp):
TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
TCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATATAATACTATAAAATATAA
TTTAAAATAATTATTATTAAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTTAATA
TTAAATTCTTAGAATTTACTAAAATCATAATATATAATACTA
Found at i:7302115 original size:15 final size:16
Alignment explanation
Indices: 7302069--7302133 Score: 57
Period size: 18 Copynumber: 4.2 Consensus size: 16
7302059 ATAATACTAT
7302069 AAAATATAATTTAA-A
1 AAAATATAATTTAATA
* *
7302084 ATAAT-T-A-TTATTA
1 AAAATATAATTTAATA
*
7302097 AAAATATAATTTAGTAA
1 AAAATATAATTTAAT-A
7302114 AAATATATAATTTAATA
1 AAA-ATATAATTTAATA
7302131 AAA
1 AAA
7302134 TTCTTTAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
12 3 0.08
13 6 0.15
14 2 0.05
15 5 0.13
16 4 0.10
17 8 0.21
18 11 0.28
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATATAATTTAATA
Found at i:7302121 original size:18 final size:17
Alignment explanation
Indices: 7302096--7302133 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
7302086 AATTATTATT
*
7302096 AAAAATATAATTTAGTA
1 AAAAATATAATTTAATA
7302113 AAAATATATAATTTAATA
1 AAAA-ATATAATTTAATA
7302131 AAA
1 AAA
7302134 TTCTTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAAATATAATTTAATA
Found at i:7306434 original size:24 final size:24
Alignment explanation
Indices: 7306381--7306434 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
7306371 TTTTAATTAA
* *
7306381 ATTTTATAAATAATTAATATTTAT
1 ATTTTAAAAATAATTAAAATTTAT
*
7306405 -TGTTTAAAAATATTTAAAATTTAT
1 AT-TTTAAAAATAATTAAAATTTAT
7306429 ATTTTA
1 ATTTTA
7306435 TATATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTAAAAATAATTAAAATTTAT
Found at i:7318486 original size:52 final size:52
Alignment explanation
Indices: 7318408--7318511 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
7318398 AACAGCTACA
*
7318408 ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCTAGAGCTCATTGGC
1 ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCCAGAGCTCATTGGC
*
7318460 ACAAAATATTTTCAGAACTTTTGTTATCCATGGCTATCCAGAGCTCATTGGC
1 ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCCAGAGCTCATTGGC
7318512 TATCTATTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (52 bp):
ACAAAATATTTTCAGAACTTATGTTATCCATGGCTATCCAGAGCTCATTGGC
Found at i:7324506 original size:16 final size:17
Alignment explanation
Indices: 7324479--7324519 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7324469 GCTTGAGATT
7324479 TCAAAATATAAAAAGTA
1 TCAAAATATAAAAAGTA
* *
7324496 T-AAAATTTAAAAATTA
1 TCAAAATATAAAAAGTA
7324512 TCAAAATA
1 TCAAAATA
7324520 AAATATAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (17 bp):
TCAAAATATAAAAAGTA
Found at i:7327228 original size:23 final size:23
Alignment explanation
Indices: 7327143--7327229 Score: 88
Period size: 23 Copynumber: 3.7 Consensus size: 23
7327133 AAGTTATTAC
*
7327143 TGAGCTGATAAACAATAAGCTCTAT
1 TGAGCTG--AAACAGTAAGCTCTAT
7327168 TGAGCTG-AACAGTAAGCTCT-T
1 TGAGCTGAAACAGTAAGCTCTAT
* * * *
7327189 TCGAGCTGAATCGGTAAGATCTAA
1 T-GAGCTGAAACAGTAAGCTCTAT
7327213 TGAGCTGAAACAGTAAG
1 TGAGCTGAAACAGTAAG
7327230 TTCTTACGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 2 0.04
22 18 0.35
23 24 0.46
24 1 0.02
25 7 0.13
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:7327240 original size:23 final size:23
Alignment explanation
Indices: 7327169--7327241 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
7327159 AAGCTCTATT
* *
7327169 GAGCTG-AACAGTAAGCTCTTTC
1 GAGCTGAAACAGTAAGATCTTAC
* * * *
7327191 GAGCTGAATCGGTAAGATCTAAT
1 GAGCTGAAACAGTAAGATCTTAC
*
7327214 GAGCTGAAACAGTAAGTTCTTAC
1 GAGCTGAAACAGTAAGATCTTAC
7327237 GAGCT
1 GAGCT
7327242 ATGGTGTGTC
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
22 6 0.15
23 33 0.85
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGATCTTAC
Found at i:7330514 original size:10 final size:10
Alignment explanation
Indices: 7330495--7330544 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
7330485 TTAAATTCTA
7330495 AAAGATAAAT
1 AAAGATAAAT
7330505 ACAA-ATAAAT
1 A-AAGATAAAT
*
7330515 AAAGATAATT
1 AAAGATAAAT
7330525 AAAGATAAAT
1 AAAGATAAAT
7330535 GAAA-ATAAAT
1 -AAAGATAAAT
7330545 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:7335034 original size:21 final size:21
Alignment explanation
Indices: 7335010--7335063 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
7335000 GGTTACTACC
*
7335010 AACAAATTATAAATTGTTAAA
1 AACAAATTATAAAATGTTAAA
7335031 AACATAATTA-AAAATGTTAAA
1 AACA-AATTATAAAATGTTAAA
7335052 AA-AAATT-TAAAA
1 AACAAATTATAAAA
7335064 AAAATTATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 8 0.27
20 1 0.03
21 16 0.53
22 5 0.17
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (21 bp):
AACAAATTATAAAATGTTAAA
Found at i:7335063 original size:10 final size:11
Alignment explanation
Indices: 7335040--7335076 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
7335030 AAACATAATT
7335040 AAAAATGTTAAA
1 AAAAAT-TTAAA
7335052 AAAAATTTAAA
1 AAAAATTTAAA
7335063 AAAAATTATAAA
1 AAAAATT-TAAA
7335075 AA
1 AA
7335077 CATTAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.50
12 12 0.50
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (11 bp):
AAAAATTTAAA
Found at i:7341450 original size:2 final size:2
Alignment explanation
Indices: 7341443--7341468 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7341433 AGAATTAAGA
7341443 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7341469 TAGAAATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7344915 original size:46 final size:44
Alignment explanation
Indices: 7344815--7344922 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
7344805 TGTCTTTAAC
** * * * *
7344815 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
*
7344859 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATA--TATAAT
7344905 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7344923 TTTCTATTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
Found at i:7349979 original size:50 final size:51
Alignment explanation
Indices: 7349902--7350030 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
7349892 GACCATGGCA
7349902 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
7349953 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
7350003 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
7350031 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:7350044 original size:31 final size:31
Alignment explanation
Indices: 7350006--7350123 Score: 202
Period size: 31 Copynumber: 3.8 Consensus size: 31
7349996 ACAAATGACA
*
7350006 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
7350037 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
7350068 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7350099 AGTGAAAAATGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
7350124 AAGTGACAAG
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
30 2 0.02
31 79 0.95
32 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7350211 original size:47 final size:46
Alignment explanation
Indices: 7350142--7350305 Score: 167
Period size: 47 Copynumber: 3.6 Consensus size: 46
7350132 AGTGATTTCC
* *
7350142 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGAT-CT
* * *
7350189 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATCT
* * * *
7350235 GTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATAT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATCT
* * *
7350277 GTGTAAGACCATAGCTGGGCTATGGCATC
1 GTATAAGACCATATCTGGGATATGGCATC
7350306 ATTATGTGAA
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
41 7 0.07
42 32 0.30
46 27 0.25
47 40 0.38
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATCT
Found at i:7350293 original size:42 final size:42
Alignment explanation
Indices: 7350192--7350332 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 42
7350182 TGCTACTGTA
* * * * *
7350192 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTTGTG
1 TAAGACCATAGCTGGGCTATGGCATC---GATATATG-AATATGTG
7350238 TAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
* *
7350280 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATGTG
7350322 TAAGACCATAG
1 TAAGACCATAG
7350333 TTGAATTATG
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
41 1 0.01
42 55 0.63
43 7 0.08
46 24 0.28
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.29
Consensus pattern (42 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
Found at i:7352277 original size:46 final size:46
Alignment explanation
Indices: 7352224--7352395 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
7352214 TGGGCATCCA
7352224 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
7352270 AACTCGTTGAGTTGAG-CCTGAGTTC-GTGA--GATG-TAACTAGACATCCG
1 AACTCGTTGAGTTGAGTCC-GAGTTCACTTATGGATGCGAA-T-G---TCCG
* * * *
7352317 AGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
7352363 AGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7352396 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 13, Indels: 22
0.74 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 4 0.04
46 55 0.54
47 24 0.24
48 4 0.04
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:7360176 original size:18 final size:18
Alignment explanation
Indices: 7360155--7360189 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7360145 CTGAATAATT
*
7360155 GACTGTTACAGAATAAAA
1 GACTGATACAGAATAAAA
*
7360173 GACTGATACGGAATAAA
1 GACTGATACAGAATAAA
7360190 TGAATATTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (18 bp):
GACTGATACAGAATAAAA
Found at i:7362426 original size:7 final size:7
Alignment explanation
Indices: 7362414--7362445 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7362404 TCACCATTTT
7362414 ACCCTAA
1 ACCCTAA
7362421 ACCCTAA
1 ACCCTAA
*
7362428 ACCTTAA
1 ACCCTAA
7362435 ACCCTAA
1 ACCCTAA
7362442 ACCC
1 ACCC
7362446 GCATTAGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.16
Consensus pattern (7 bp):
ACCCTAA
Found at i:7363069 original size:24 final size:24
Alignment explanation
Indices: 7363042--7363091 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
7363032 ACAGTCCCGC
*
7363042 AACCTATGGGGACCACTACAAAAG
1 AACCTATGGAGACCACTACAAAAG
*
7363066 AACCTATGTAGACCACTACAAAAG
1 AACCTATGGAGACCACTACAAAAG
7363090 AA
1 AA
7363092 GCACTCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.24, G:0.16, T:0.14
Consensus pattern (24 bp):
AACCTATGGAGACCACTACAAAAG
Found at i:7368335 original size:74 final size:74
Alignment explanation
Indices: 7368189--7368324 Score: 233
Period size: 71 Copynumber: 1.9 Consensus size: 74
7368179 TCATGATTAA
*
7368189 ATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTCTAAA
1 ATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATTCTAAA
7368254 AGAAAATTT
66 AGAAAATTT
*
7368263 ATTATCAAGAATTTTATGAAA-T-TATAT-ATTATTAAATTATATTTAATAATAATTATTTTAAA
1 ATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATTCTAAA
7368325 TTATACAAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
71 33 0.55
72 5 0.08
73 1 0.02
74 21 0.35
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (74 bp):
ATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATTCTAAA
AGAAAATTT
Found at i:7368638 original size:18 final size:17
Alignment explanation
Indices: 7368610--7368644 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7368600 ATTATTAAGA
*
7368610 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7368627 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7368645 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7368701 original size:120 final size:120
Alignment explanation
Indices: 7368370--7369381 Score: 1742
Period size: 120 Copynumber: 8.4 Consensus size: 120
7368360 AATTATTTTA
* *
7368370 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AATTTATATTT
* * * *
7368434 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAA-
65 TACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
* * * *
7368489 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AATTTATATTT
* * * *
7368553 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7368609 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
* * * *
7368674 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7368729 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
7368794 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7368849 AATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
7368914 ACAGTATCATATATTATAATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7368969 AATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7369034 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
* *
7369089 AATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7369154 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7369209 AATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7369274 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
7369329 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
7369382 TAAATATGAT
Statistics
Matches: 870, Mismatches: 21, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
119 117 0.13
120 751 0.86
121 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
Found at i:7368764 original size:16 final size:16
Alignment explanation
Indices: 7368743--7368785 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7368733 TTATTAAATT
7368743 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
7368759 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
7368774 AT-TATGTTAATT
1 ATATATTTTAATT
7368786 TATATTTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:7369358 original size:18 final size:17
Alignment explanation
Indices: 7369330--7369364 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7369320 ATTATTAAGA
*
7369330 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7369347 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7369365 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7369555 original size:39 final size:40
Alignment explanation
Indices: 7369506--7369614 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 40
7369496 AGTTTTTTCC
7369506 ATTATGCTATTACACCTCTATTCCATTCAACCAAACACAAG
1 ATTA-GCTATTACACCTCTATTCCATTCAACCAAACACAAG
* **
7369547 ATTA-CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTAG
1 ATTAGCTATTACACCTCTATT-C----CATTCAACCAAACACAAG
*
7369591 ATTAGCTATTACACCTCTAATCCA
1 ATTAGCTATTACACCTCTATTCCA
7369615 ATACACCTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
39 15 0.26
40 3 0.05
41 4 0.07
44 21 0.37
45 14 0.25
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.31
Consensus pattern (40 bp):
ATTAGCTATTACACCTCTATTCCATTCAACCAAACACAAG
Found at i:7369593 original size:44 final size:45
Alignment explanation
Indices: 7369529--7369619 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
7369519 ACCTCTATTC
* * *
7369529 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
**
7369573 CATTCAACCAAACAGTAGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
7369618 CA
1 CA
7369620 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.38, C:0.29, G:0.05, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:7369634 original size:17 final size:16
Alignment explanation
Indices: 7369600--7369652 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
7369590 GATTAGCTAT
7369600 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7369616 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
7369633 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7369649 TACA
1 TACA
7369653 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7371738 original size:64 final size:64
Alignment explanation
Indices: 7371664--7371789 Score: 252
Period size: 64 Copynumber: 2.0 Consensus size: 64
7371654 TGCTTGAAGT
7371664 ACAAATTTTATAAAAACCTCATTTTCCCCCATGTGATAGAAACCTTGTATTCCATTTTTCAAGC
1 ACAAATTTTATAAAAACCTCATTTTCCCCCATGTGATAGAAACCTTGTATTCCATTTTTCAAGC
7371728 ACAAATTTTATAAAAACCTCATTTTCCCCCATGTGATAGAAACCTTGTATTCCATTTTTCAA
1 ACAAATTTTATAAAAACCTCATTTTCCCCCATGTGATAGAAACCTTGTATTCCATTTTTCAA
7371790 TTATCTGCTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (64 bp):
ACAAATTTTATAAAAACCTCATTTTCCCCCATGTGATAGAAACCTTGTATTCCATTTTTCAAGC
Found at i:7378800 original size:31 final size:31
Alignment explanation
Indices: 7378765--7378847 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
7378755 CTATCTGCAT
* *
7378765 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
7378796 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
7378827 TAAAAATTACAACCAAAAACA
1 T-AAAA-TCCAACCAAAAACA
7378848 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
32 4 0.10
33 12 0.29
ACGTcount: A:0.60, C:0.19, G:0.04, T:0.17
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:7384717 original size:9 final size:9
Alignment explanation
Indices: 7384703--7384830 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
7384693 ATGTATTAGT
7384703 TAAGTTATG
1 TAAGTTATG
7384712 TAAGTTGTTATG
1 TAA---GTTATG
*
7384724 TACGTTATG
1 TAAGTTATG
*
7384733 TGAGTTATG
1 TAAGTTATG
*
7384742 TAAATTATG
1 TAAGTTATG
7384751 TAAGTTATG
1 TAAGTTATG
*
7384760 TGAGTTATG
1 TAAGTTATG
7384769 TAAGTTGTTATG
1 TAA---GTTATG
*
7384781 TAAATTATG
1 TAAGTTATG
*
7384790 TAAGTTATA
1 TAAGTTATG
*
7384799 TGAGTTATG
1 TAAGTTATG
7384808 TAAGTTATG
1 TAAGTTATG
* *
7384817 TAATTTATT
1 TAAGTTATG
7384826 TAAGT
1 TAAGT
7384831 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7384830 original size:57 final size:57
Alignment explanation
Indices: 7384703--7384830 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
7384693 ATGTATTAGT
** * *
7384703 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
7384760 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
7384817 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
7384831 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:7387020 original size:5 final size:5
Alignment explanation
Indices: 7386994--7387051 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
7386984 ATGTGTTAAA
* * *
7386994 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATA ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
7387043 ATATT ATAT
1 ATATT ATAT
7387052 AAATAAGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
5 30 0.70
6 10 0.23
7 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (5 bp):
ATATT
Found at i:7387426 original size:18 final size:19
Alignment explanation
Indices: 7387403--7387441 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
7387393 ATATATAGAT
7387403 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
7387421 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
7387440 AT
1 AT
7387442 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:7387791 original size:39 final size:39
Alignment explanation
Indices: 7387681--7387815 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
7387671 GACCTCGAGT
* * * *
7387681 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
7387722 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
7387760 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
7387799 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
7387816 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:7387951 original size:13 final size:12
Alignment explanation
Indices: 7387928--7387976 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 12
7387918 GAGCTATTGG
*
7387928 AATGAAATGAGA
1 AATGAATTGAGA
7387940 AATTGAATTGAGA
1 AA-TGAATTGAGA
7387953 AATGAAATTGAGA
1 AATG-AATTGAGA
*
7387966 TATGAGATTGA
1 AATGA-ATTGA
7387977 AAACATGAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 5 0.16
13 27 0.84
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (12 bp):
AATGAATTGAGA
Found at i:7390696 original size:11 final size:11
Alignment explanation
Indices: 7390682--7390731 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
7390672 AATATTTTAA
7390682 AAATTCTTGAC
1 AAATTCTTGAC
* *
7390693 AAATTATTTTGTC
1 AAA-T-TCTTGAC
*
7390706 AAATTCTTGAA
1 AAATTCTTGAC
7390717 AAATTCTTGAC
1 AAATTCTTGAC
7390728 AAAT
1 AAAT
7390732 ATACAAGTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 21 0.68
12 2 0.06
13 8 0.26
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATTCTTGAC
Found at i:7391131 original size:18 final size:19
Alignment explanation
Indices: 7391110--7391145 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7391100 TTTGAAATTC
7391110 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
7391128 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
7391146 CAGAAATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:7391780 original size:40 final size:41
Alignment explanation
Indices: 7391729--7391829 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 41
7391719 TTTAGTGGCG
**
7391729 TTTTACAAAAGCTTCACTAATTCTCAATTTTT-GCGGCGTT
1 TTTTACAAAAGCGCCACTAATTCTCAATTTTTAGCGGCGTT
* * *
7391769 TTTTACGAAAGCGCCACTAATTCTCTATTTTTAGTGGCGTT
1 TTTTACAAAAGCGCCACTAATTCTCAATTTTTAGCGGCGTT
*
7391810 TTTGTA-AAAA-CGCCGCTAAT
1 TTT-TACAAAAGCGCCACTAAT
7391830 GCCTCTGCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 37 0.71
41 13 0.25
42 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.40
Consensus pattern (41 bp):
TTTTACAAAAGCGCCACTAATTCTCAATTTTTAGCGGCGTT
Found at i:7392979 original size:41 final size:40
Alignment explanation
Indices: 7392906--7392992 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 40
7392896 CCCGGCCCAT
*
7392906 ACCATTAACTTAATATATATACTATACCATTGAACTGGCCTAA
1 ACCATAAACTTAATATATATACTATACCATTGAAC---CCTAA
* *
7392949 ACCATAAACTTAA-A-ATATATTCTACCATTGAACCCTAA
1 ACCATAAACTTAATATATATACTATACCATTGAACCCTAA
7392987 ACCATA
1 ACCATA
7392993 GGCTTTAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
38 11 0.27
41 17 0.41
42 1 0.02
43 12 0.29
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.30
Consensus pattern (40 bp):
ACCATAAACTTAATATATATACTATACCATTGAACCCTAA
Found at i:7393202 original size:28 final size:28
Alignment explanation
Indices: 7393166--7393233 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
7393156 AGTTTATGGA
*
7393166 TTAGTGTTTATGGTTT-ATGTTTTAAAAT
1 TTAGGGTTTATGGTTTAATG-TTTAAAAT
* *
7393194 TTAGGGTTTAGGGTTTAATGTTTAAGAT
1 TTAGGGTTTATGGTTTAATGTTTAAAAT
7393222 TTAAGGGTTTAT
1 TT-AGGGTTTAT
7393234 AGAAAGCCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.68
29 11 0.32
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (28 bp):
TTAGGGTTTATGGTTTAATGTTTAAAAT
Found at i:7393217 original size:21 final size:21
Alignment explanation
Indices: 7393170--7393232 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
7393160 TATGGATTAG
* * *
7393170 TGTTTATGGTTTATGTTTTAA
1 TGTTTAAGGTTTAGGGTTTAA
** *
7393191 AATTTAGGGTTTAGGGTTTAA
1 TGTTTAAGGTTTAGGGTTTAA
*
7393212 TGTTTAAGATTTAAGGGTTTA
1 TGTTTAAGGTTT-AGGGTTTA
7393233 TAGAAAGCCA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
21 24 0.75
22 8 0.25
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (21 bp):
TGTTTAAGGTTTAGGGTTTAA
Found at i:7393567 original size:41 final size:40
Alignment explanation
Indices: 7393526--7393871 Score: 292
Period size: 41 Copynumber: 8.5 Consensus size: 40
7393516 TTTTGCGGCA
* *
7393526 TTTGGACCAAAAACGCCGCTATTAATCAGTTTTTAGTGGCAT
1 TTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGTGGC-G
* * * *
7393568 TTTGGACAAAAACGCCACAAAAAACTGATCA---ATT-GTGGCG
1 TTTGGACAAAAACGCCGC----TATTGATCAGTTTTTAGTGGCG
** * * *
7393608 TTTTTATCCAAAACGCCACAATTGATCAGTTTTTAGTGGCG
1 TTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
7393649 TTTGGGATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
1 TTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
7393690 TTTGGGATAAAAACGCCGCAATTGATCAGTTTTTAGTGGCG
1 TTT-GGACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
*
7393731 TTTGGA-ATTAAAACGCCGCTATTGATCAGCTTTTAGTGGCG
1 TTTGGACA--AAAACGCCGCTATTGATCAGTTTTTAGTGGCG
** * *
7393772 TTTGGTGAAAAACGCCACTATTGACCAGTTTTTAGTGGCG
1 TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * * * * *
7393812 TTTTGGCCAAAAACACCGTTATAGTTTAGTTTTTAGTGGCG
1 -TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
7393853 TTTCGGAC--AAACGCCGCTA
1 TTT-GGACAAAAACGCCGCTA
7393872 ATGTTTATTA
Statistics
Matches: 255, Mismatches: 34, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
37 8 0.03
39 10 0.04
40 41 0.16
41 180 0.71
42 10 0.04
45 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (40 bp):
TTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
Found at i:7397418 original size:55 final size:55
Alignment explanation
Indices: 7397355--7397467 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
7397345 TCAGTGTATT
7397355 TATGCTCGATCAACACTTTGGTGCGTATATTGGAGTGTTGGTGGATTGATCTGAC
1 TATGCTCGATCAACACTTTGGTGCGTATATTGGAGTGTTGGTGGATTGATCTGAC
7397410 TATGCTCGATCAACACTTTGGTGCGTATATTGGAGTGTTGGTGGATTGATCTGAC
1 TATGCTCGATCAACACTTTGGTGCGTATATTGGAGTGTTGGTGGATTGATCTGAC
7397465 TAT
1 TAT
7397468 CTATCCTTGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.37
Consensus pattern (55 bp):
TATGCTCGATCAACACTTTGGTGCGTATATTGGAGTGTTGGTGGATTGATCTGAC
Found at i:7404515 original size:27 final size:27
Alignment explanation
Indices: 7404485--7404538 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7404475 TCATACAACC
* *
7404485 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
7404512 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
7404539 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:7432163 original size:9 final size:9
Alignment explanation
Indices: 7432146--7432180 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
7432136 TAAGTGATTA
*
7432146 TTATGAAAT
1 TTATCAAAT
7432155 TTATCAAAT
1 TTATCAAAT
7432164 TTATCAAAT
1 TTATCAAAT
7432173 TTATCAAA
1 TTATCAAA
7432181 AGTAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (9 bp):
TTATCAAAT
Found at i:7433590 original size:25 final size:25
Alignment explanation
Indices: 7433556--7433605 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7433546 AAATAGGTTG
7433556 GAAATTGAATGAAATTATTTTTATT
1 GAAATTGAATGAAATTATTTTTATT
7433581 GAAATTGAATGAAATTATTTTTATT
1 GAAATTGAATGAAATTATTTTTATT
7433606 CTTTTCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (25 bp):
GAAATTGAATGAAATTATTTTTATT
Found at i:7435141 original size:23 final size:23
Alignment explanation
Indices: 7435115--7435163 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
7435105 AATTAAAATA
*
7435115 AAATAATTAAGTA-ATAATTAATT
1 AAATAATTAAG-AGATAACTAATT
*
7435138 AAATTATTAAGAGATAACTAATT
1 AAATAATTAAGAGATAACTAATT
7435161 AAA
1 AAA
7435164 AAAAAGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 22 0.96
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (23 bp):
AAATAATTAAGAGATAACTAATT
Found at i:7438908 original size:17 final size:18
Alignment explanation
Indices: 7438882--7438920 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
7438872 GTATTATATA
*
7438882 ATAATGATAATAGTTA-T
1 ATAATAATAATAGTTAGT
7438899 ATAATAATAATAGTTAGT
1 ATAATAATAATAGTTAGT
7438917 ATAA
1 ATAA
7438921 AAGAAAGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (18 bp):
ATAATAATAATAGTTAGT
Found at i:7441715 original size:38 final size:39
Alignment explanation
Indices: 7441615--7441724 Score: 100
Period size: 39 Copynumber: 2.8 Consensus size: 39
7441605 ACTCTAAGTT
* * *
7441615 GATGAGACACTGGATGTCATACTGTTACTTCGGATAGATTC
1 GATGAGACA-TGGGTGTCA-AATATTACTTCGGATAGATTC
** *
7441656 GATGAGGTACA-GGGTACCAAAT-TTACTTCGGCTAGA-TC
1 GATGA-G-ACATGGGTGTCAAATATTACTTCGGATAGATTC
7441694 GATGAGACATTGGGTGTCAAATATTACTTCG
1 GATGAGACA-TGGGTGTCAAATATTACTTCG
7441725 AACTATCCGA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
36 3 0.05
37 1 0.02
38 16 0.28
39 21 0.37
40 2 0.04
41 10 0.18
42 1 0.02
43 3 0.05
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (39 bp):
GATGAGACATGGGTGTCAAATATTACTTCGGATAGATTC
Found at i:7453359 original size:22 final size:21
Alignment explanation
Indices: 7453330--7453370 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7453320 AAAAATCTAC
7453330 ATATTAATTAGAATATTTTAA
1 ATATTAATTAGAATATTTTAA
* *
7453351 ATATATAATTTGAATTTTTT
1 ATAT-TAATTAGAATATTTT
7453371 TTTAAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
ATATTAATTAGAATATTTTAA
Found at i:7453732 original size:44 final size:44
Alignment explanation
Indices: 7453668--7453880 Score: 258
Period size: 44 Copynumber: 4.9 Consensus size: 44
7453658 ATAAATAGAG
* * *
7453668 AGGATAGATACATAGAAAAAACTGAAGCAAGATAACTTTTAATC
1 AGGATAGACACATAGCAAAAACTGAAGCAAGATAGCTTTTAATC
* *
7453712 AGGATAGACACA-AGGCAAAAACTGGAGCAAGATAGCTATTAATC
1 AGGATAGACACATA-GCAAAAACTGAAGCAAGATAGCTTTTAATC
* *
7453756 AGGATAGATACATAGCAAAAACTGGAA-CAAGATTGCTTTTAATC
1 AGGATAGACACATAGCAAAAACT-GAAGCAAGATAGCTTTTAATC
*
7453800 AGGATAGACACA-AGGC--AAACTGGAGCAAGATAGCTTTTAATC
1 AGGATAGACACATA-GCAAAAACTGAAGCAAGATAGCTTTTAATC
* *
7453842 AGGATAGATACATAGCAAAAACT-AGAGCAAGATTGCTTT
1 AGGATAGACACATAGCAAAAACTGA-AGCAAGATAGCTTT
7453881 AAACCAAAGG
Statistics
Matches: 145, Mismatches: 15, Indels: 18
0.81 0.08 0.10
Matches are distributed among these distances:
41 2 0.01
42 34 0.23
43 3 0.02
44 103 0.71
45 3 0.02
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (44 bp):
AGGATAGACACATAGCAAAAACTGAAGCAAGATAGCTTTTAATC
Found at i:7453858 original size:86 final size:86
Alignment explanation
Indices: 7453668--7453880 Score: 338
Period size: 86 Copynumber: 2.4 Consensus size: 86
7453658 ATAAATAGAG
* **
7453668 AGGATAGATACATAGAAAAAACTGAAGCAAGATAACTTTTAATCAGGATAGACACAAGGCAAAAA
1 AGGATAGATACATAGCAAAAACTGAA-CAAGATTGCTTTTAATCAGGATAGACACAAGGC-AAAA
7453733 CTGGAGCAAGATAGCTATTAATC
64 CTGGAGCAAGATAGCTATTAATC
7453756 AGGATAGATACATAGCAAAAACTGGAACAAGATTGCTTTTAATCAGGATAGACACAAGGC-AAAC
1 AGGATAGATACATAGCAAAAACT-GAACAAGATTGCTTTTAATCAGGATAGACACAAGGCAAAAC
*
7453820 TGGAGCAAGATAGCTTTTAATC
65 TGGAGCAAGATAGCTATTAATC
*
7453842 AGGATAGATACATAGCAAAAACTAGAGCAAGATTGCTTT
1 AGGATAGATACATAGCAAAAACT-GAACAAGATTGCTTT
7453881 AAACCAAAGG
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
86 62 0.53
88 53 0.45
89 3 0.03
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (86 bp):
AGGATAGATACATAGCAAAAACTGAACAAGATTGCTTTTAATCAGGATAGACACAAGGCAAAACT
GGAGCAAGATAGCTATTAATC
Found at i:7456688 original size:17 final size:17
Alignment explanation
Indices: 7456666--7456699 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7456656 AAATGTAATA
7456666 CTGCAAAATGAAATTCT
1 CTGCAAAATGAAATTCT
7456683 CTGCAAAATGAAATTCT
1 CTGCAAAATGAAATTCT
7456700 TAGTACTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
CTGCAAAATGAAATTCT
Found at i:7457905 original size:54 final size:53
Alignment explanation
Indices: 7457841--7458009 Score: 173
Period size: 54 Copynumber: 3.4 Consensus size: 53
7457831 CCTCAAGAAC
*
7457841 TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTCCTTGAAGAG
1 TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAG
*
7457894 TTTTGTGGTTTTAAGGGAAATTG------A----T--GGTCCTTTTTTGAAGAG
1 TTTT-TGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAG
* * **
7457936 ATTTTTGGTTTTAAGGGAATTTGATAAAAAGTTTTGAGATTTTTTCTTGAAGAG
1 -TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAG
7457990 TTTTGTGGTTTTAAGGGAAA
1 TTTT-TGGTTTTAAGGGAAA
7458010 CTTATGGTCC
Statistics
Matches: 93, Mismatches: 8, Indels: 29
0.72 0.06 0.22
Matches are distributed among these distances:
42 32 0.34
43 4 0.04
44 1 0.01
48 2 0.02
52 1 0.01
53 8 0.09
54 45 0.48
ACGTcount: A:0.27, C:0.04, G:0.25, T:0.44
Consensus pattern (53 bp):
TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAG
Found at i:7457924 original size:42 final size:42
Alignment explanation
Indices: 7457873--7457960 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
7457863 ATAAAAAGTT
7457873 TTGA-GGTCCTTCCTTGAAGAG-TTTTGTGGTTTTAAGGGAAA
1 TTGATGGTCCTTCCTTGAAGAGATTTT-TGGTTTTAAGGGAAA
** *
7457914 TTGATGGTCCTTTTTTGAAGAGATTTTTGGTTTTAAGGGAAT
1 TTGATGGTCCTTCCTTGAAGAGATTTTTGGTTTTAAGGGAAA
7457956 TTGAT
1 TTGAT
7457961 AAAAAGTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 4 0.10
42 34 0.81
43 4 0.10
ACGTcount: A:0.22, C:0.07, G:0.27, T:0.44
Consensus pattern (42 bp):
TTGATGGTCCTTCCTTGAAGAGATTTTTGGTTTTAAGGGAAA
Found at i:7457985 original size:96 final size:95
Alignment explanation
Indices: 7457750--7458056 Score: 448
Period size: 96 Copynumber: 3.3 Consensus size: 95
7457740 TCAAGAAAGG
*
7457750 TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAGTGTTT-TAGTTT
1 TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAGT-TTTGTGGTTT
*
7457814 TAAGGGAAATTGATGGTCC----TCAAGA-A
65 TAAGGGAAATTGATGGTCCTTTTTGAAGAGA
*
7457840 CTTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTCCTTGAAGAGTTTTGTGGTTT
1 -TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAGTTTTGTGGTTT
7457905 TAAGGGAAATTGATGGTCCTTTTTTGAAGAGA
65 TAAGGGAAATTGATGGTCC-TTTTTGAAGAGA
* * **
7457937 TTTTTGGTTTTAAGGGAATTTGATAAAAAGTTTTGAGATTTTTTCTTGAAGAGTTTTGTGGTTTT
1 TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAGTTTTGTGGTTTT
*
7458002 AAGGGAAACTT-ATGGTCCTTTCTTGAAGAGC
66 AAGGGAAA-TTGATGGTCCTTT-TTGAAGAGA
7458033 TTTTTGGTTTTAAGGGAAATTGAT
1 TTTTTGGTTTTAAGGGAAATTGAT
7458057 GGTGCTTTCT
Statistics
Matches: 197, Mismatches: 10, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
90 3 0.02
91 77 0.39
95 3 0.02
96 111 0.56
97 3 0.02
ACGTcount: A:0.26, C:0.06, G:0.25, T:0.43
Consensus pattern (95 bp):
TTTTTGGTTTTAAGGGAAATTGATAAAAAGTTTTGAGGTCCTTTCTTGAAGAGTTTTGTGGTTTT
AAGGGAAATTGATGGTCCTTTTTGAAGAGA
Found at i:7458025 original size:42 final size:42
Alignment explanation
Indices: 7457978--7458075 Score: 155
Period size: 42 Copynumber: 2.3 Consensus size: 42
7457968 TTTGAGATTT
7457978 TTTCTTGAAGAG-TTTTGTGGTTTTAAGGGAAACTT-ATGGTCC
1 TTTCTTGAAGAGCTTTT-TGGTTTTAAGGGAAA-TTGATGGTCC
*
7458020 TTTCTTGAAGAGCTTTTTGGTTTTAAGGGAAATTGATGGTGC
1 TTTCTTGAAGAGCTTTTTGGTTTTAAGGGAAATTGATGGTCC
7458062 TTTCTTGAAGAGCT
1 TTTCTTGAAGAGCT
7458076 CTTCTGTTTT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
41 2 0.04
42 47 0.89
43 4 0.08
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.43
Consensus pattern (42 bp):
TTTCTTGAAGAGCTTTTTGGTTTTAAGGGAAATTGATGGTCC
Found at i:7459563 original size:24 final size:24
Alignment explanation
Indices: 7459535--7459629 Score: 138
Period size: 24 Copynumber: 4.0 Consensus size: 24
7459525 TCTTTCTAGA
* *
7459535 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
7459559 ATATTTAGCATTTATTAGCATAAT
1 ATATTTAGCATTTATTAGCATAAT
*
7459583 ATATTTAACATTTATTAGCATAAT
1 ATATTTAGCATTTATTAGCATAAT
*
7459607 ATATTT-GACATTTATTAGTATAA
1 ATATTTAG-CATTTATTAGCATAA
7459630 AATCTTTGTT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.48
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:7469234 original size:25 final size:26
Alignment explanation
Indices: 7469192--7469249 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
7469182 TTTCTTTTCA
** * *
7469192 TTTTTTAGATTAGGTTTTCCTTTT-T
1 TTTTTTAGAAAAGATTTTACTTTTGT
7469217 TTTTTTAGAAAAGATTTTACTTTTGT
1 TTTTTTAGAAAAGATTTTACTTTTGT
*
7469243 TGTTTTA
1 TTTTTTA
7469250 TTTCTTTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 20 0.74
26 7 0.26
ACGTcount: A:0.19, C:0.05, G:0.12, T:0.64
Consensus pattern (26 bp):
TTTTTTAGAAAAGATTTTACTTTTGT
Found at i:7476118 original size:16 final size:16
Alignment explanation
Indices: 7476097--7476164 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
7476087 TTTGGTTCGC
7476097 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7476113 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
7476129 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
7476145 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7476161 TGTA
1 TGTA
7476165 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7476420 original size:16 final size:16
Alignment explanation
Indices: 7476380--7476434 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
7476370 TTAATCATAT
*
7476380 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
7476396 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
7476411 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
7476429 -TAAAAT
1 TTAAAAT
7476435 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:7476427 original size:18 final size:17
Alignment explanation
Indices: 7476400--7476434 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7476390 TTTTTATTAA
*
7476400 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7476418 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7476435 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7476547 original size:18 final size:17
Alignment explanation
Indices: 7476520--7476554 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7476510 TTACTATTAA
*
7476520 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7476538 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7476555 TCTTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7476600 original size:61 final size:60
Alignment explanation
Indices: 7476415--7476605 Score: 155
Period size: 61 Copynumber: 3.2 Consensus size: 60
7476405 TTTTAATTAA
* *
7476415 AATATATAATTTAATAAAATTCTTAATAATT-AATATTCTTATATTAATTTACTGAAATCAT
1 AATATATAATTTAATAAAATTCTTAAT-ATTAAATATTCTTATATAAATTTTCT-AAATCAT
* * * * * *
7476476 AATATATGATACT-GTAAAA-T-ATAA-ATTAACATAATTAC-TAT-TAAATATATT-TTAATTA
1 AATATATAAT-TTAATAAAATTCTTAATATTAA-AT-ATT-CTTATATAAAT-T-TTCTAAATCA
*
7476534 A
60 T
*
7476535 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTTCT-AAATCAT
7476596 AATATATAAT
1 AATATATAAT
7476606 ACTATGAAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 30
0.68 0.12 0.21
Matches are distributed among these distances:
57 3 0.03
58 2 0.02
59 30 0.31
60 18 0.18
61 39 0.40
62 6 0.06
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTTCTAAATCAT
Found at i:7476683 original size:120 final size:120
Alignment explanation
Indices: 7476378--7476661 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
7476368 ATTTAATCAT
*
7476378 ATTTAAACATAATTTTTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAAT-
* * * *
7476443 ATT-AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATA
64 ATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
* *
7476499 AATTAACATAATTACTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
* *
7476564 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATGAAATATA
66 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
*
7476619 ATTTAACATAATTATTATTAAATATAATTTAA-TAAAATATATA
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATA
7476662 TTTTCAATTA
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 133 0.89
121 3 0.02
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
Found at i:7478596 original size:19 final size:19
Alignment explanation
Indices: 7478572--7478608 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7478562 ATAAAATATT
7478572 ATCGTTCAGGTACATATAC
1 ATCGTTCAGGTACATATAC
*
7478591 ATCGTTCAGGTGCATATA
1 ATCGTTCAGGTACATATA
7478609 GAGGTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (19 bp):
ATCGTTCAGGTACATATAC
Found at i:7485507 original size:21 final size:22
Alignment explanation
Indices: 7485481--7485527 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7485471 CTCTGCTCAA
*
7485481 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
7485502 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
7485524 ACTC
1 ACTC
7485528 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:7509251 original size:71 final size:71
Alignment explanation
Indices: 7509135--7509281 Score: 242
Period size: 71 Copynumber: 2.1 Consensus size: 71
7509125 TGAAGACCTA
* * *
7509135 GGTGTGGTAGATGGATGTGTTTTCATGTGTATATGTATTTTCTACCTAC-GAGCTTTGTACTCAT
1 GGTGTCGTAGATGGATGTGTTTGCATGTGTATATGTATTTTCTACCTACAG-GCTTTGCACTCAT
7509199 GTGCTTT
65 GTGCTTT
*
7509206 GGTGTCGTGGATGGATGTGTTTGCATGTGTATATGTATTTTCTACCTACAGGCTTTGCACTCATG
1 GGTGTCGTAGATGGATGTGTTTGCATGTGTATATGTATTTTCTACCTACAGGCTTTGCACTCATG
7509271 TGCTTT
66 TGCTTT
7509277 GGTGT
1 GGTGT
7509282 GGTGTAGTTA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 70 0.99
72 1 0.01
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.44
Consensus pattern (71 bp):
GGTGTCGTAGATGGATGTGTTTGCATGTGTATATGTATTTTCTACCTACAGGCTTTGCACTCATG
TGCTTT
Found at i:7516960 original size:23 final size:22
Alignment explanation
Indices: 7516934--7516989 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 22
7516924 TCACAATTGG
7516934 GCATTCAAACTCATACCAAATAT
1 GCATTCAAACTCATACCAAA-AT
* * *
7516957 GCATCCAAAGT-ATACCTAAAT
1 GCATTCAAACTCATACCAAAAT
7516978 G-A-TCAAACTCAT
1 GCATTCAAACTCAT
7516990 TTAATAGACT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
19 5 0.19
20 3 0.11
21 3 0.11
22 7 0.26
23 9 0.33
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25
Consensus pattern (22 bp):
GCATTCAAACTCATACCAAAAT
Found at i:7520135 original size:13 final size:13
Alignment explanation
Indices: 7520119--7520160 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7520109 AGGTTTGCAT
*
7520119 ATAGTGTTCACAC
1 ATAGGGTTCACAC
*
7520132 ATAGGGTCCAC-C
1 ATAGGGTTCACAC
7520144 TATAGGGTTCACAC
1 -ATAGGGTTCACAC
7520158 ATA
1 ATA
7520161 CAGGGTTCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (13 bp):
ATAGGGTTCACAC
Found at i:7520400 original size:45 final size:45
Alignment explanation
Indices: 7520320--7520434 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
7520310 TAAAGTCTGA
* * *
7520320 CACTGGACTGTGGATACACAACAAAAATTCGCAGATGAAACCTGC
1 CACTGGACTGTGGGTACACAACAAAAATTCACAGATAAAACCTGC
* **
7520365 CACTGGATTGTGGGTACACAAC-AAAATATCACAGATAAAATTTGC
1 CACTGGACTGTGGGTACACAACAAAAAT-TCACAGATAAAACCTGC
* * *
7520410 CACTAGACTGTAGGTACACTACAAA
1 CACTGGACTGTGGGTACACAACAAA
7520435 CTATTGCAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 5 0.09
45 51 0.88
46 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (45 bp):
CACTGGACTGTGGGTACACAACAAAAATTCACAGATAAAACCTGC
Found at i:7520448 original size:45 final size:45
Alignment explanation
Indices: 7520362--7520450 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
7520352 AGATGAAACC
* * * *
7520362 TGCCACTGGATTGTGGGTACACAACAAAATATCACAGATAAAATT
1 TGCCACTAGACTGTAGGTACACAACAAAATATCACAAATAAAATT
* * **
7520407 TGCCACTAGACTGTAGGTACACTACAAACTATTGCAAATAAAAT
1 TGCCACTAGACTGTAGGTACACAACAAAATATCACAAATAAAAT
7520451 CTGTCACTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (45 bp):
TGCCACTAGACTGTAGGTACACAACAAAATATCACAAATAAAATT
Found at i:7521118 original size:29 final size:28
Alignment explanation
Indices: 7521057--7521519 Score: 238
Period size: 28 Copynumber: 16.5 Consensus size: 28
7521047 AAGCAGGGGA
7521057 CAAAA-TAGTAAAATCTAAAAAAAT-GGG
1 CAAAACTA-TAAAATCTAAAAAAATAGGG
*
7521084 ATAAAACTATAAAATCTAAAAAAAATAGGG
1 -CAAAACTATAAAATCT-AAAAAAATAGGG
* * * *
7521114 AAAAATTGTAAAAT-T-GAAAAATATGGG
1 CAAAACTATAAAATCTAAAAAAATA-GGG
** * *
7521141 CAAAGTTGTAAAA-C-ATAAAAAATAAGG
1 CAAAACTATAAAATCTA-AAAAAATAGGG
* ** * * *
7521168 CTAAGTTGTAAAATCTGAAAACATAGGGG
1 CAAAACTATAAAATCTAAAAAAATA-GGG
7521197 CAAAACTATAAAATCT-AAAAAATAGTGG
1 CAAAACTATAAAATCTAAAAAAATAG-GG
* **
7521225 AAAAACTATAAAAT-TTGAAAAATAGGAG
1 CAAAACTATAAAATCTAAAAAAATAGG-G
* ** *
7521253 ACAAAATTATAAAAT-TTGACAAATAGGGG
1 -CAAAACTATAAAATCTAAAAAAATA-GGG
* * ***
7521282 CTAAACTATAAAATATGTGAAAATAGGGG
1 CAAAACTATAAAATCTAAAAAAATA-GGG
7521311 CAAAACTATAAAATCT-AAAAAATAAGGG
1 CAAAACTATAAAATCTAAAAAAAT-AGGG
*
7521339 CTAAACTATAAAATCT-AAAAAATAAGGG
1 CAAAACTATAAAATCTAAAAAAAT-AGGG
* ** *
7521367 -AAAATTATAAAAT-TTGAAAAATATGAG
1 CAAAACTATAAAATCTAAAAAAATA-GGG
* **
7521394 CAAAACTGTAAAATCT-TTAAAATAGAGG
1 CAAAACTATAAAATCTAAAAAAATAG-GG
* * *
7521422 AAAAATTGTAAAATCT-AAAAAATAGGG
1 CAAAACTATAAAATCTAAAAAAATAGGG
* * *
7521449 CAAAAGTGTAAAATCTAGAAAAATAGGGG
1 CAAAACTATAAAATCTAAAAAAATA-GGG
* * * **
7521478 CAAAAGTGTAAAATAT-GGAAAATATGGG
1 CAAAACTATAAAATCTAAAAAAATA-GGG
*
7521506 AAAAACTATAAAAT
1 CAAAACTATAAAAT
7521520 TTGAAAAATA
Statistics
Matches: 355, Mismatches: 56, Indels: 48
0.77 0.12 0.10
Matches are distributed among these distances:
26 9 0.03
27 67 0.19
28 173 0.49
29 101 0.28
30 5 0.01
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.22
Consensus pattern (28 bp):
CAAAACTATAAAATCTAAAAAAATAGGG
Found at i:7523376 original size:16 final size:17
Alignment explanation
Indices: 7523339--7523376 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
7523329 TATTACATTC
7523339 AAAA-TTAAAAATATTT
1 AAAATTTAAAAATATTT
*
7523355 ATAATTTAAAAATA-TT
1 AAAATTTAAAAATATTT
7523371 AAAATT
1 AAAATT
7523377 ATTTGAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTTAAAAATATTT
Found at i:7526316 original size:18 final size:20
Alignment explanation
Indices: 7526293--7526345 Score: 74
Period size: 18 Copynumber: 2.8 Consensus size: 20
7526283 TTTTGTTGGC
*
7526293 ATAGGTGAATTGGT-TTAT-
1 ATAGGTGAATTGGTAATATG
7526311 ATAGGTGAATTGGTAATATG
1 ATAGGTGAATTGGTAATATG
*
7526331 ATAAGTGAATTGGTA
1 ATAGGTGAATTGGTA
7526346 TGAGACCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 14 0.45
19 3 0.10
20 14 0.45
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (20 bp):
ATAGGTGAATTGGTAATATG
Found at i:7526340 original size:20 final size:19
Alignment explanation
Indices: 7526297--7526345 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
7526287 GTTGGCATAG
* *
7526297 GTGAATTGGT-TTATATAG
1 GTGAATTGGTAATATATAA
7526315 GTGAATTGGTAATATGATAA
1 GTGAATTGGTAATAT-ATAA
7526335 GTGAATTGGTA
1 GTGAATTGGTA
7526346 TGAGACCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 10 0.37
19 3 0.11
20 14 0.52
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.39
Consensus pattern (19 bp):
GTGAATTGGTAATATATAA
Found at i:7535545 original size:176 final size:176
Alignment explanation
Indices: 7535091--7535768 Score: 896
Period size: 176 Copynumber: 3.8 Consensus size: 176
7535081 ATCTTCGCAG
* *
7535091 ATGGTGAATCTTATCTCCATGTATCGACAATGGAACAGATTTTATCACCAGTCTCATCTCTCTGA
1 ATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTATCACCAGCCTCATCTCTCTGA
* *
7535156 GGTAGCAAGAAAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
66 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAG
* ****
7535221 ATTTGAAGATCTTATTTCTCTGAG-TTGCACCAAAGCAGATCTTCGCAG-
131 ATTTGAAGATCTTATTTCACTGAGATTGCAGTGGAGCAGA---TCG-AGA
* *
7535269 ATGGTGAATCTTATCTTCATGTATCGATAATGGAGCAGATTTTATCACCAGCCTCATCTCTCTGA
1 ATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTATCACCAGCCTCATCTCTCTGA
* * *
7535334 GGTAGGAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGTAGATTGAG
66 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAG
*
7535399 ATTTAAAGATCTTATTTCACTGAGATTGCAGTGGAGCAGATCGAGA
131 ATTTGAAGATCTTATTTCACTGAGATTGCAGTGGAGCAGATCGAGA
* * * * * * *
7535445 ATGGTGGATATTATCTTCATGTATTGGCAATGGAGCAGATTTTATCACCGGCCTCATCCCTCTGA
1 ATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTATCACCAGCCTCATCTCTCTGA
** * * * *
7535510 TATAGTAAGAGAGCAGGTTGAATAATAAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAG
66 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAG
* *
7535575 TTTTGAATATCTTATTTCACTGAGATTGCAGTGGAGCAGATCGAGA
131 ATTTGAAGATCTTATTTCACTGAGATTGCAGTGGAGCAGATCGAGA
* * * * * * *
7535621 ATGGTGAATCCTATCTCCATGTATCGGCAATGGAGTAGATTTTACCACTAGCCTTATTTCTCTGA
1 ATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTATCACCAGCCTCATCTCTCTGA
* * * *
7535686 GGTGGCAAGAGAGCGGGTTAAAG-ATGGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGA
66 GGTAGCAAGAGAGCAGGTTGAAGAAT-GAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTG-
*
7535750 AGA-CTGAAGATCTTATTTC
129 AGATTTGAAGATCTTATTTC
7535769 CTCAAGTAAT
Statistics
Matches: 438, Mismatches: 58, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
175 4 0.01
176 278 0.63
177 2 0.00
178 143 0.33
179 11 0.03
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (176 bp):
ATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTATCACCAGCCTCATCTCTCTGA
GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAG
ATTTGAAGATCTTATTTCACTGAGATTGCAGTGGAGCAGATCGAGA
Found at i:7536036 original size:22 final size:24
Alignment explanation
Indices: 7535988--7536036 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
7535978 AATAGAAATT
*
7535988 TAAA-AAACCAAAACCAAAAATAA
1 TAAATAAACCAAAAACAAAAATAA
7536011 -AAATAAA-CAAAAACAAAAA-AA
1 TAAATAAACCAAAAACAAAAATAA
7536032 TAAAT
1 TAAAT
7536037 TAAGATGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 2 0.09
22 18 0.78
23 3 0.13
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (24 bp):
TAAATAAACCAAAAACAAAAATAA
Found at i:7537489 original size:18 final size:18
Alignment explanation
Indices: 7537441--7537490 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7537431 ATTTTTATTA
*
7537441 TATCATTTATATTATTTG
1 TATCATTTATATTAATTG
*
7537459 TAAT-GTTTATATTAATTG
1 T-ATCATTTATATTAATTG
*
7537477 TATCATTTGTATTA
1 TATCATTTATATTA
7537491 TTAGTTTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (18 bp):
TATCATTTATATTAATTG
Found at i:7541232 original size:12 final size:12
Alignment explanation
Indices: 7541215--7541246 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
7541205 GGACACATAG
7541215 TCGTGTCCCAGC
1 TCGTGTCCCAGC
7541227 TCGTGTCCCAGC
1 TCGTGTCCCAGC
7541239 TCGTGTCC
1 TCGTGTCC
7541247 TCACTAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.41, G:0.25, T:0.28
Consensus pattern (12 bp):
TCGTGTCCCAGC
Found at i:7541290 original size:13 final size:13
Alignment explanation
Indices: 7541272--7541305 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
7541262 TCTGAGTAGG
7541272 GTCACACGGCCGT
1 GTCACACGGCCGT
7541285 GTCACACGGCCGT
1 GTCACACGGCCGT
7541298 GTCACACG
1 GTCACACG
7541306 CTTGTATGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.38, G:0.29, T:0.15
Consensus pattern (13 bp):
GTCACACGGCCGT
Found at i:7542370 original size:130 final size:132
Alignment explanation
Indices: 7542161--7542530 Score: 374
Period size: 130 Copynumber: 2.8 Consensus size: 132
7542151 GTGAGAATGT
* * * * * ** * * *
7542161 AAAGGAATGTTCGATCATTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATT-C
1 AAAGG-ATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * * * *
7542225 TCGAATTGTCAAATATCGAATATTGCCTTCGTTTTAAATAATTTTTAGAAGATATGAATGAAATC
65 ACGAATTGTCAAATATCGAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATC
7542290 TT-
130 TTG
* *
7542292 AAAGGGATATTTGATTATTTTAAAC-AA-TCGAAATTGCAACCCAACACGTTAGGGCACGATTCC
1 AAA-GGATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * ** * * * * *
7542355 ACAAATTGCCAAATATCGCGTATCGCCTTCG-TTCAAGGGA-TTTTAAAAGACATGAGTGAAATT
65 ACGAATTGTCAAATATCGAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATC
7542418 TTG
130 TTG
* * * *
7542421 AAATGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
1 AAAGGATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
** * *
7542486 CGAATTGTCAAATATTAAATCTCGTCTTCGTTTTAAAGAATTTTT
66 CGAATTGTCAAATATCGAATATCGCCTTCGTTTTAAAGAATTTTT
7542531 GAATGAATGA
Statistics
Matches: 189, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
128 38 0.20
129 37 0.20
130 85 0.45
131 23 0.12
132 6 0.03
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (132 bp):
AAAGGATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
CGAATTGTCAAATATCGAATATCGCCTTCGTTTTAAAGAATTTTTAAAAGACATGAATGAAATCT
TG
Found at i:7543728 original size:5 final size:5
Alignment explanation
Indices: 7543718--7543749 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7543708 CATTATGTGA
7543718 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7543750 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7543743 original size:9 final size:9
Alignment explanation
Indices: 7543719--7543749 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
7543709 ATTATGTGAA
7543719 AAATAAAAT
1 AAATAAAAT
7543728 AAAATAAAAT
1 -AAATAAAAT
7543738 AAATAAAAT
1 AAATAAAAT
7543747 AAA
1 AAA
7543750 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:7548766 original size:149 final size:149
Alignment explanation
Indices: 7548582--7548865 Score: 342
Period size: 148 Copynumber: 1.9 Consensus size: 149
7548572 TAAAATACAT
* *
7548582 ATAATAATAAACTAAAAGATATGTTATATAAGATTATAT-ATTTAAAAGACGAGAATAAATTTAA
1 ATAATAATAAACTAAAAGATATATTATATAAGATTATATAATATAAAAGA--AGAATAAATTTAA
* *
7548646 AAGAAACTATATGCGTAAAATAATAT-AGAATTAATAATATGCAT-AGAATAAAA-TAATCTTAC
64 AAGAAACTACATGCATAAAATAATATAAG-ATTAATAATATGCATGA-AATAAAATTAATCTTAC
7548708 TATAAAGTACGTATATATATATA
127 TATAAAGTACGTATATATATATA
** * * * * * * *
7548731 ATAATAATAATTTAAAAGATGTATTATGTAGGATTATGTAATATAATATAAGAATAAATTTAAAG
1 ATAATAATAAACTAAAAGATATATTATATAAGATTATATAATATAAAAGAAGAATAAATTTAAAA
* * * * *
7548796 GGAATTACATGTATAAAATAATATAAGATTAATAATATGCATGAAATAAAATTAATTTTATTATA
66 GAAACTACATGCATAAAATAATATAAGATTAATAATATGCATGAAATAAAATTAATCTTACTATA
7548861 AAGTA
131 AAGTA
7548866 TATGTATATA
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
148 55 0.49
149 51 0.45
150 7 0.06
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (149 bp):
ATAATAATAAACTAAAAGATATATTATATAAGATTATATAATATAAAAGAAGAATAAATTTAAAA
GAAACTACATGCATAAAATAATATAAGATTAATAATATGCATGAAATAAAATTAATCTTACTATA
AAGTACGTATATATATATA
Found at i:7552662 original size:20 final size:20
Alignment explanation
Indices: 7552637--7552676 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7552627 TTGTCAAATC
7552637 CCTACTGAAGCAACTTGGCT
1 CCTACTGAAGCAACTTGGCT
7552657 CCTACTGAAGCAACTTGGCT
1 CCTACTGAAGCAACTTGGCT
7552677 AAGAGTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (20 bp):
CCTACTGAAGCAACTTGGCT
Found at i:7553545 original size:18 final size:18
Alignment explanation
Indices: 7553521--7553560 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
7553511 GTCTCTCTCA
7553521 ATAAAAATTCAAAATATTT
1 ATAAAAATTCAAAA-ATTT
*
7553540 ATAAAAATTCTAAAATTT
1 ATAAAAATTCAAAAATTT
7553558 ATA
1 ATA
7553561 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAAAAATTCAAAAATTT
Found at i:7557098 original size:74 final size:76
Alignment explanation
Indices: 7557020--7557166 Score: 262
Period size: 75 Copynumber: 2.0 Consensus size: 76
7557010 ATTTTTATAT
*
7557020 ATAAAAATAAATTT-AAAAATATAATATATCAAATACACTAAAAATATTAAAATAAGTGTTTCCA
1 ATAAAAATAAATTTAAAAAATATAATATATCAAATACACTAAAAATATTAAAATAAATGTTTCCA
7557084 AA-AAATTTGA
66 AATAAATTTGA
*
7557094 ATAAAAATAAATTTAAAAAATATAATATATCAAATACAGTAAAAATATTAAAATAAATGTTTCCA
1 ATAAAAATAAATTTAAAAAATATAATATATCAAATACACTAAAAATATTAAAATAAATGTTTCCA
7557159 AATAAATT
66 AATAAATT
7557167 GAAAATACAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
74 14 0.20
75 50 0.72
76 5 0.07
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (76 bp):
ATAAAAATAAATTTAAAAAATATAATATATCAAATACACTAAAAATATTAAAATAAATGTTTCCA
AATAAATTTGA
Found at i:7571317 original size:17 final size:17
Alignment explanation
Indices: 7571295--7571356 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
7571285 ATATTGAACT
7571295 ATTCAAACTCAATGAGA
1 ATTCAAACTCAATGAGA
*
7571312 ATTCAAA-TATATATTGA-A
1 ATTCAAACT-CA-A-TGAGA
7571330 CTATTCAAACTCAATGAGA
1 --ATTCAAACTCAATGAGA
7571349 ATTCAAAC
1 ATTCAAAC
7571357 ATTCACTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 1 0.03
17 16 0.44
18 5 0.14
19 5 0.14
20 8 0.22
21 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.29
Consensus pattern (17 bp):
ATTCAAACTCAATGAGA
Found at i:7571331 original size:37 final size:37
Alignment explanation
Indices: 7571281--7571355 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
7571271 ATATTAATTT
7571281 ATATATATTGAACTATTCAAACTCAATGAGAATTCAA
1 ATATATATTGAACTATTCAAACTCAATGAGAATTCAA
7571318 ATATATATTGAACTATTCAAACTCAATGAGAATTCAA
1 ATATATATTGAACTATTCAAACTCAATGAGAATTCAA
7571355 A
1 A
7571356 CATTCACTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (37 bp):
ATATATATTGAACTATTCAAACTCAATGAGAATTCAA
Found at i:7571504 original size:18 final size:18
Alignment explanation
Indices: 7571452--7571507 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
7571442 TCATTAACAC
*
7571452 TCAG-AACAATTATTTAT
1 TCAGTAACAATTAATTAT
* * *
7571469 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATTAATTAT
*
7571487 TCGGTAACAATTAATTAT
1 TCAGTAACAATTAATTAT
7571505 TCA
1 TCA
7571508 ATAATAACCA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
17 4 0.13
18 26 0.87
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCAGTAACAATTAATTAT
Found at i:7571571 original size:18 final size:18
Alignment explanation
Indices: 7571545--7571729 Score: 128
Period size: 18 Copynumber: 10.3 Consensus size: 18
7571535 AATTGATCGG
*
7571545 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
7571563 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* * *
7571581 -TATTCAGTAAAAATTAA
1 TTATTCAGTAACAGTCAA
*
7571598 GTTATTCAGTAAGAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
7571616 TTCATTCAGTGACAATCCA
1 TT-ATTCAGTAACAGTCAA
* *
7571635 TTATTCAATAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
7571653 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
7571671 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
* *
7571690 -TATCCAGTAACAGTTAA
1 TTATTCAGTAACAGTCAA
* *
7571707 TTATTCAGTAATAATCAA
1 TTATTCAGTAACAGTCAA
7571725 TTATT
1 TTATT
7571730 TTATACTTTT
Statistics
Matches: 130, Mismatches: 27, Indels: 20
0.73 0.15 0.11
Matches are distributed among these distances:
17 19 0.15
18 95 0.73
19 16 0.12
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:7571605 original size:19 final size:18
Alignment explanation
Indices: 7571563--7571609 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
7571553 TAACAGTCAA
*
7571563 TTATTCAGT-AAAATCAG
1 TTATTCAGTAAAAATAAG
*
7571580 ATATTCAGTAAAAATTAAG
1 TTATTCAGTAAAAA-TAAG
7571599 TTATTCAGTAA
1 TTATTCAGTAA
7571610 GAGTCATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 8 0.32
18 4 0.16
19 13 0.52
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAAAAATAAG
Found at i:7571609 original size:54 final size:52
Alignment explanation
Indices: 7571545--7571729 Score: 156
Period size: 54 Copynumber: 3.4 Consensus size: 52
7571535 AATTGATCGG
* *
7571545 TTATCCAGTAACAGTCAATTATTCAGTAAAATCAGATATTCAGTAAAAATTAA
1 TTATTCAGTAATAGTCAATTATTCAGTAAAATCA-ATATTCAGTAAAAATTAA
* * * * ** *
7571598 GTTATTCAGTAAGAGTC-ATTCATTCAGTGACAATCCATTATTCAATAATGATCAA
1 -TTATTCAGTAATAGTCAATT-ATTCAGT-AAAAT-CAATATTCAGTAAAAATTAA
* * * * * *
7571653 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAATATCCAGTAACAGTTAA
1 TTATTCAGTAATAGTCAATTATTCAGTAA-AATC-AATATTCAGTAAAAATTAA
*
7571707 TTATTCAGTAATAATCAATTATT
1 TTATTCAGTAATAGTCAATTATT
7571730 TTATACTTTT
Statistics
Matches: 103, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
53 5 0.05
54 77 0.75
55 19 0.18
56 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (52 bp):
TTATTCAGTAATAGTCAATTATTCAGTAAAATCAATATTCAGTAAAAATTAA
Found at i:7571710 original size:72 final size:72
Alignment explanation
Indices: 7571546--7571729 Score: 221
Period size: 72 Copynumber: 2.6 Consensus size: 72
7571536 ATTGATCGGT
7571546 TATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAAAAATTAAGTTATTCAGTA
1 TATCCAGTAACAGTCAATTATTCAGTAATAATCA-ATTATTCAGTAAAAATTAAGTTATTCAGTA
* *
7571609 AGAGTCAT
65 ACAGTCAA
* * * * * * * *
7571617 TCATTCAGTGACAATCCATTATTCAATAATGATCAATTATTCAGT-AATATTCAGTTATTCAGTA
1 T-ATCCAGTAACAGTCAATTATTCAGTAATAATCAATTATTCAGTAAAAATTAAGTTATTCAGTA
7571681 ACAGTCTAA
65 ACAGTC-AA
*
7571690 TATCCAGTAACAGTTAATTATTCAGTAATAATCAATTATT
1 TATCCAGTAACAGTCAATTATTCAGTAATAATCAATTATT
7571730 TTATACTTTT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
71 1 0.01
72 77 0.84
73 14 0.15
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (72 bp):
TATCCAGTAACAGTCAATTATTCAGTAATAATCAATTATTCAGTAAAAATTAAGTTATTCAGTAA
CAGTCAA
Found at i:7571980 original size:51 final size:45
Alignment explanation
Indices: 7571887--7571985 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
7571877 ACAAATCCAG
* *
7571887 AACAGTAACAGTATTCAACACACAAAGTGCTGAATCGATAACGGT
1 AACAGTAACAGTATTCGACACACAAAGTGCCGAATCGATAACGGT
* *
7571932 AACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGTAACAGT
1 AACAGTAACAGTATTCGACACACAAAGTGCCGAATCGATAACGGT
*
7571977 AACGGTAAC
1 AACAGTAAC
7571986 GGTAACAGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTATTCGACACACAAAGTGCCGAATCGATAACGGT
Found at i:7572355 original size:9 final size:9
Alignment explanation
Indices: 7572341--7572365 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7572331 ATAAATCAAT
7572341 TCAATATAA
1 TCAATATAA
7572350 TCAATATAA
1 TCAATATAA
7572359 TCAATAT
1 TCAATAT
7572366 TCAATCCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (9 bp):
TCAATATAA
Found at i:7572361 original size:23 final size:22
Alignment explanation
Indices: 7572317--7572363 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
7572307 CAATTCAAAC
*
7572317 ATTCACATATATTCATAAATCA
1 ATTCACATATAATCATAAATCA
7572339 ATTCA-ATATAATCAATATAATCA
1 ATTCACATATAATC-ATA-AATCA
7572362 AT
1 AT
7572364 ATTCAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 8 0.36
23 7 0.32
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTCACATATAATCATAAATCA
Found at i:7577419 original size:33 final size:33
Alignment explanation
Indices: 7577355--7577418 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
7577345 AAAGGGTAAA
7577355 ATTTAAAAATTTTATAAAAATTAGTAAAAAATC
1 ATTTAAAAATTTTATAAAAATTAGTAAAAAATC
7577388 ATTTAGAAAATTTTA-AAATTAATTA-TAAAAA
1 ATTTA-AAAATTTTATAAA--AATTAGTAAAAA
7577419 TAAAAAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
33 8 0.29
34 15 0.54
35 5 0.18
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (33 bp):
ATTTAAAAATTTTATAAAAATTAGTAAAAAATC
Found at i:7577759 original size:19 final size:20
Alignment explanation
Indices: 7577735--7577785 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7577725 AAATATTATG
* *
7577735 ATTTTTACAATT-TATAATT
1 ATTTTTAAAATTGCATAATT
7577754 ATTTTTTAAAATTGCATAATT
1 A-TTTTTAAAATTGCATAATT
*
7577775 ATTTTCAAAAT
1 ATTTTTAAAAT
7577786 AATTTAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 19 0.70
21 7 0.26
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTTTTAAAATTGCATAATT
Found at i:7577882 original size:19 final size:18
Alignment explanation
Indices: 7577788--7577900 Score: 74
Period size: 19 Copynumber: 6.2 Consensus size: 18
7577778 TTCAAAATAA
7577788 TTTA-AATTATTTAATAGTT
1 TTTACAATT-TTTAATA-TT
* *
7577807 TTTAC-A-TTTTAAAAAT
1 TTTACAATTTTTAATATT
*
7577823 TTAACAATTTTT-ATACTTT
1 TTTACAATTTTTAATA--TT
* *
7577842 TTTACAATTTTTAAGAACT
1 TTTACAATTTTTAA-TATT
7577861 TTTACAACTTTTTAATATT
1 TTTACAA-TTTTTAATATT
*
7577880 TTTA-AATTATTTTATATT
1 TTTACAATT-TTTAATATT
7577898 TTT
1 TTT
7577901 TAAAATAAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
16 5 0.07
17 11 0.15
18 18 0.24
19 31 0.42
20 8 0.11
21 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTACAATTTTTAATATT
Found at i:7587495 original size:25 final size:24
Alignment explanation
Indices: 7587441--7587502 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 24
7587431 TTTACTCTAC
*
7587441 TTTAAAAAT-TGAATGTAATTAAT
1 TTTAAAAATATAAATGTAATTAAT
* *
7587464 TTGAAAAATATAAATTTAATTTAAT
1 TTTAAAAATATAAATGTAA-TTAAT
*
7587489 TTTAAAATTATAAA
1 TTTAAAAATATAAA
7587503 CTATTGAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 8 0.25
24 7 0.22
25 17 0.53
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (24 bp):
TTTAAAAATATAAATGTAATTAAT
Found at i:7592489 original size:3 final size:3
Alignment explanation
Indices: 7592481--7592512 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7592471 ATAATAGAAA
*
7592481 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7592513 CTATATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7594179 original size:132 final size:132
Alignment explanation
Indices: 7594024--7594678 Score: 823
Period size: 132 Copynumber: 5.0 Consensus size: 132
7594014 CTGCCATCTT
* * * * * *
7594024 CGATCTACTCCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
* *
7594089 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
66 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
7594154 TG
131 TG
7594156 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
7594221 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
66 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
7594286 TG
131 TG
7594288 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
* *
7594353 AGGAAGATAGGATCTGCTACCTTCGATCTTCTTCACGCCAATACATGAAGACAAAATCTGCTTTC
66 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
7594418 TG
131 TG
** *
7594420 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTTCTTCAC-GCCAATA
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATA
* * * * ** * * *** *
7594484 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCTACCAATATGGGAAGACAAGATCTGC-A
65 TAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTT
*
7594548 TCTT
129 TCTG
* * * * * * ** *
7594552 CGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTTCTTCAC-GCCAAT
1 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAAT
* * * * ** * * ***
7594615 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC
64 ATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGC
7594679 ATCTTTGATC
Statistics
Matches: 484, Mismatches: 35, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
131 23 0.05
132 439 0.91
133 22 0.05
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (132 bp):
CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATAT
AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
TG
Found at i:7594467 original size:220 final size:220
Alignment explanation
Indices: 7594180--7594694 Score: 881
Period size: 220 Copynumber: 2.3 Consensus size: 220
7594170 ACCAATATGG
* * * * * * *
7594180 GAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCT
7594243 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAAT
65 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAAT
7594308 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTAC
130 ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTAC
7594373 CTTCGATCTTCTTCACGCCAATACAT
195 CTTCGATCTTCTTCACGCCAATACAT
* *
7594399 GAAGACAAAATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * *
7594464 CGATCTTCTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCTACCAATA
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATA
7594529 TGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACC
131 TGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACC
7594594 TTCGATCTTCTTCACGCCAATACAT
196 TTCGATCTTCTTCACGCCAATACAT
7594619 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* *
7594684 TGATCCACTTC
66 CGATCTACTTC
7594695 CTACCAATAT
Statistics
Matches: 277, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
219 14 0.05
220 240 0.87
221 23 0.08
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (220 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATA
TGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACC
TTCGATCTTCTTCACGCCAATACAT
Found at i:7606906 original size:13 final size:14
Alignment explanation
Indices: 7606888--7606922 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7606878 CATATGAATG
7606888 TATATAA-TATATA
1 TATATAACTATATA
7606901 TATATAAACTATATA
1 TATAT-AACTATATA
7606916 TATATAA
1 TATATAA
7606923 AAAATATGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 4 0.20
15 11 0.55
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATAACTATATA
Found at i:7606906 original size:15 final size:15
Alignment explanation
Indices: 7606895--7606923 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7606885 ATGTATATAA
7606895 TATATATATATAAAC
1 TATATATATATAAAC
7606910 TATATATATATAAA
1 TATATATATATAAA
7606924 AAATATGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:7606929 original size:15 final size:15
Alignment explanation
Indices: 7606896--7606929 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7606886 TGTATATAAT
**
7606896 ATATATATATAAACT
1 ATATATATATAAAAA
7606911 ATATATATATAAAAA
1 ATATATATATAAAAA
7606926 ATAT
1 ATAT
7606930 GGTAATGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATATATATAAAAA
Found at i:7607044 original size:3 final size:3
Alignment explanation
Indices: 7607029--7607086 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
7607019 GTATGTAAGT
*
7607029 ATA ATA A-A A-A ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
7607072 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
7607087 ACTAAAAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 7 0.15
3 39 0.83
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Done.