Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 261 of 320
Found at i:84976239 original size:18 final size:19
Alignment explanation
Indices: 84976199--84976245 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
84976189 TTTCCCGAGA
* *
84976199 ATTTTAATATGCTTCTAGC
1 ATTTTAATATCCTTCAAGC
*
84976218 ATTTTAA-ATCCTTCAAGG
1 ATTTTAATATCCTTCAAGC
84976236 ATTTTAATAT
1 ATTTTAATAT
84976246 AAACTTTACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTTTAATATCCTTCAAGC
Found at i:84980778 original size:9 final size:9
Alignment explanation
Indices: 84980764--84980789 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
84980754 CTAAACTTTC
84980764 AACTTCTTG
1 AACTTCTTG
84980773 AACTTCTTG
1 AACTTCTTG
84980782 AACTTCTT
1 AACTTCTT
84980790 CATTAATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (9 bp):
AACTTCTTG
Found at i:84985690 original size:132 final size:131
Alignment explanation
Indices: 84985440--84985705 Score: 300
Period size: 132 Copynumber: 2.0 Consensus size: 131
84985430 ATTATTCTTT
* ** * * *
84985440 TAAAAATTCTTTAAACGAAGGTGATGTTCGACAATTGGCAATTTGCTGAATCGTGCCCTAACATG
1 TAAAAACTCTTTAAACGAAGGAAATGTTCGACAATTGGAAATTTGCGGAATAGTGCCCTAACATG
* * * * * * * *
84985505 CTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTTCCTTTAGGATTTCATTCATGTTTT
66 CTGGGTTGCAATCTCCCGTTTACTCAAAATAATCAAATATCCCGTTAGGATTTCACTCATGTTTT
84985570 C
131 C
*** * * *
84985571 TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGAAATTTGGGGAATAGTGCCCTATCGT
1 TAAAAACTCTTT-AAACGAAGGAAATGTTCGACAATTGGAAATTTGCGGAATAGTGCCCTAACAT
* * *
84985636 GCTGGGTTGCAATCTCCCGTTTATTTAAAATAATCAAATATCCCGTT-GGAATTTCACTCGTGTT
65 GCTGGGTTGCAATCTCCCGTTTACTCAAAATAATCAAATATCCCGTTAGG-ATTTCACTCATGTT
84985700 TTC
129 TTC
84985703 TAA
1 TAA
84985706 GGCGAGGCAA
Statistics
Matches: 110, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
131 13 0.12
132 97 0.88
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (131 bp):
TAAAAACTCTTTAAACGAAGGAAATGTTCGACAATTGGAAATTTGCGGAATAGTGCCCTAACATG
CTGGGTTGCAATCTCCCGTTTACTCAAAATAATCAAATATCCCGTTAGGATTTCACTCATGTTTT
C
Found at i:84986816 original size:22 final size:23
Alignment explanation
Indices: 84986791--84986836 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
84986781 CAACCAAATC
84986791 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
84986813 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
84986836 A
1 A
84986837 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:84986842 original size:23 final size:23
Alignment explanation
Indices: 84986798--84986842 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
84986788 ATCAATTCAA
*
84986798 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
84986821 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
84986843 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:84990645 original size:18 final size:18
Alignment explanation
Indices: 84990611--84990645 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84990601 AATTGTTATA
*
84990611 TTTTTCTTATATGTTTTC
1 TTTTTCTTATATCTTTTC
*
84990629 TTTTTCTTATTTCTTTT
1 TTTTTCTTATATCTTTT
84990646 TTTAGATCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.11, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTTTCTTATATCTTTTC
Found at i:84990750 original size:16 final size:17
Alignment explanation
Indices: 84990729--84990769 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
84990719 AATAAATCAT
84990729 TAAAAATTCATAAA-A-A
1 TAAAAATTCA-AAATAGA
84990745 TAAAAATTCAAAATAGA
1 TAAAAATTCAAAATAGA
84990762 TAAAAATT
1 TAAAAATT
84990770 AGTTCAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.13
16 11 0.48
17 9 0.39
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (17 bp):
TAAAAATTCAAAATAGA
Found at i:84992811 original size:11 final size:11
Alignment explanation
Indices: 84992786--84992818 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
84992776 ATTTTAATCA
84992786 AAATTTTAT-T
1 AAATTTTATAT
84992796 AAATTTTATAT
1 AAATTTTATAT
84992807 AAATTTTA-AT
1 AAATTTTATAT
84992817 AA
1 AA
84992819 TATATGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
AAATTTTATAT
Found at i:85000664 original size:17 final size:19
Alignment explanation
Indices: 85000626--85000664 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
85000616 TTATATACTT
*
85000626 AATAAATTATTTATTCAAA
1 AATAAAATATTTATTCAAA
85000645 AATAAAATATTT-TT-AAA
1 AATAAAATATTTATTCAAA
85000662 AAT
1 AAT
85000665 TTAACCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATAAAATATTTATTCAAA
Found at i:85008118 original size:28 final size:27
Alignment explanation
Indices: 85008076--85008139 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
85008066 TTGTCTAGAT
*
85008076 TCATTATAGAATTATAA-AATATATATAAA
1 TCATTA-ATAATTATAATAAT-TAT-TAAA
85008105 TCATTAATAATTATAATAATTATTAAA
1 TCATTAATAATTATAATAATTATTAAA
85008132 --ATTAATAA
1 TCATTAATAA
85008140 AGAAAAATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 8 0.24
27 4 0.12
28 12 0.36
29 9 0.27
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (27 bp):
TCATTAATAATTATAATAATTATTAAA
Found at i:85008119 original size:19 final size:18
Alignment explanation
Indices: 85008090--85008140 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
85008080 TATAGAATTA
85008090 TAAAATATATATAAATCAT
1 TAAAAT-TATATAAATCAT
*
85008109 TAATAATTATA-ATAATTAT
1 TAA-AATTATATA-AATCAT
85008128 TAAAATTA-ATAAA
1 TAAAATTATATAAA
85008141 GAAAAATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 3 0.11
18 7 0.25
19 15 0.54
20 3 0.11
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTATATAAATCAT
Found at i:85008359 original size:16 final size:15
Alignment explanation
Indices: 85008338--85008398 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 15
85008328 AAAATTTTAC
85008338 ATAATTTATAAAGAAA
1 ATAATTTATAAA-AAA
85008354 ATAATTTATTAAAAATA
1 ATAATTTA-TAAAAA-A
** *
85008371 A-AAAATAGAAAAAA
1 ATAATTTATAAAAAA
85008385 ATAATTTATAAAAA
1 ATAATTTATAAAAA
85008399 TATTTAGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
14 2 0.06
15 14 0.39
16 14 0.39
17 6 0.17
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
ATAATTTATAAAAAA
Found at i:85008398 original size:14 final size:16
Alignment explanation
Indices: 85008338--85008396 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
85008328 AAAATTTTAC
85008338 ATAATTTATAAAGAAA
1 ATAATTTATAAAGAAA
85008354 ATAATTTATTAAA-AATA
1 ATAATTTA-TAAAGAA-A
** *
85008371 A-AAAATAGAAA-AAA
1 ATAATTTATAAAGAAA
85008385 ATAATTTATAAA
1 ATAATTTATAAA
85008397 AATATTTAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
14 2 0.06
15 12 0.35
16 14 0.41
17 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
ATAATTTATAAAGAAA
Found at i:85008667 original size:9 final size:10
Alignment explanation
Indices: 85008606--85008695 Score: 64
Period size: 9 Copynumber: 9.3 Consensus size: 10
85008596 AAAATAATAC
85008606 TTTTTA-AAT
1 TTTTTATAAT
*
85008615 TTTTTATGAT
1 TTTTTATAAT
* *
85008625 GTTTAATTAAT
1 TTTTTA-TAAT
* *
85008636 TTCTAATAA-
1 TTTTTATAAT
85008645 TTTTTATAA-
1 TTTTTATAAT
*
85008654 ATTTTA-AATT
1 TTTTTATAA-T
85008664 TTTTTATAA-
1 TTTTTATAAT
*
85008673 TTTTTATGAT
1 TTTTTATAAT
85008683 TTTTTATAAT
1 TTTTTATAAT
85008693 TTT
1 TTT
85008696 AGAATGTATC
Statistics
Matches: 63, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
8 2 0.03
9 26 0.41
10 26 0.41
11 9 0.14
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:85008669 original size:19 final size:19
Alignment explanation
Indices: 85008641--85008696 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
85008631 TTAATTTCTA
85008641 ATAA-TTTTTATAAATTTT
1 ATAATTTTTTATAAATTTT
*
85008659 A-AATTTTTTTATAATTTTT
1 ATAA-TTTTTTATAAATTTT
*
85008678 ATGATTTTTTAT-AATTTT
1 ATAATTTTTTATAAATTTT
85008696 A
1 A
85008697 GAATGTATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 2 0.06
18 7 0.22
19 22 0.69
20 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
ATAATTTTTTATAAATTTT
Found at i:85012474 original size:21 final size:21
Alignment explanation
Indices: 85012439--85012479 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
85012429 GGTAATTTTA
*
85012439 ACTTGACCTGGGATAATTTCG
1 ACTTGACATGGGATAATTTCG
* *
85012460 ACTTGACATGTGATATTTTC
1 ACTTGACATGGGATAATTTC
85012480 TAATTGATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (21 bp):
ACTTGACATGGGATAATTTCG
Found at i:85026858 original size:20 final size:20
Alignment explanation
Indices: 85026825--85026865 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
85026815 GAGGTGACAT
* *
85026825 CGTGATGACGTGATGAAACC
1 CGTGACGACATGATGAAACC
85026845 CGTGACGACATGATGAAACC
1 CGTGACGACATGATGAAACC
85026865 C
1 C
85026866 CAAACGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.17
Consensus pattern (20 bp):
CGTGACGACATGATGAAACC
Found at i:85030818 original size:8 final size:9
Alignment explanation
Indices: 85030781--85030823 Score: 54
Period size: 8 Copynumber: 4.9 Consensus size: 9
85030771 AATTTCTAAA
85030781 AATATTTTT
1 AATATTTTT
85030790 ATATATTTTT
1 A-ATATTTTT
*
85030800 AATAATTTT
1 AATATTTTT
85030809 AAT-TTTTT
1 AATATTTTT
85030817 AAT-TTTT
1 AATATTTT
85030824 AAAAATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
8 11 0.35
9 11 0.35
10 9 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
AATATTTTT
Found at i:85037130 original size:22 final size:22
Alignment explanation
Indices: 85037100--85037149 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
85037090 TCCTTTTCCC
*
85037100 CCCTCCCTTCTCTCTTCTTTCT
1 CCCTTCCTTCTCTCTTCTTTCT
* * *
85037122 CCCTTCCTTTTTTTTTCTTTCT
1 CCCTTCCTTCTCTCTTCTTTCT
*
85037144 CTCTTC
1 CCCTTC
85037150 AAAATGATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (22 bp):
CCCTTCCTTCTCTCTTCTTTCT
Found at i:85037476 original size:11 final size:11
Alignment explanation
Indices: 85037452--85037494 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
85037442 TTCTAATACG
*
85037452 TATATATATTA
1 TATATATTTTA
*
85037463 TATGTATTTTA
1 TATATATTTTA
* *
85037474 TATATATTATG
1 TATATATTTTA
85037485 TATATATTTT
1 TATATATTTT
85037495 TTTAATGCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:85037701 original size:18 final size:19
Alignment explanation
Indices: 85037680--85037725 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
85037670 ACATTAGTGT
85037680 ATATTTTATGTACATAT-A
1 ATATTTTATGTACATATCA
*
85037698 ATATTTTTTGTACATATCA
1 ATATTTTATGTACATATCA
*
85037717 TTATTTTAT
1 ATATTTTAT
85037726 ATTATTGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (19 bp):
ATATTTTATGTACATATCA
Found at i:85040319 original size:24 final size:24
Alignment explanation
Indices: 85040276--85040325 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
85040266 TTCCTTTCTT
*
85040276 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTCCATACATTGGCA
*
85040300 TTGCATTGCATTGCAT-CATTGGCA
1 TTGCATT-CATTCCATACATTGGCA
85040324 TT
1 TT
85040326 AAACTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (24 bp):
TTGCATTCATTCCATACATTGGCA
Found at i:85043598 original size:12 final size:12
Alignment explanation
Indices: 85043577--85043609 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
85043567 CTGGGAACTG
*
85043577 AAGAAATGAGGC
1 AAGAAGTGAGGC
85043589 AAGAAGTGAGGC
1 AAGAAGTGAGGC
85043601 AAGAAGTGA
1 AAGAAGTGA
85043610 AGATTGAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.48, C:0.06, G:0.36, T:0.09
Consensus pattern (12 bp):
AAGAAGTGAGGC
Found at i:85047428 original size:18 final size:18
Alignment explanation
Indices: 85047393--85047426 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85047383 GTACAAGAGC
85047393 CTCAACGCAAGGACAAAG
1 CTCAACGCAAGGACAAAG
*
85047411 CTCAAC-CAAGGGCAAA
1 CTCAACGCAAGGACAAA
85047427 AGAGTGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.29, G:0.21, T:0.06
Consensus pattern (18 bp):
CTCAACGCAAGGACAAAG
Found at i:85070836 original size:71 final size:71
Alignment explanation
Indices: 85070715--85070857 Score: 243
Period size: 71 Copynumber: 2.0 Consensus size: 71
85070705 AATGTTGATG
*
85070715 TATGATTCTGATTGGCTGGGCCAGATCTTAAAGAACTAGAAACTACATTTGGTCATGCTGATTAA
1 TATGATTCTAATTGGCTGGGCCAGATCTTAAAGAACTAGAAACTACATTTGGTCATGCTGATTAA
85070780 TGGAAT
66 TGGAAT
**
85070786 TATGATTCTAATTGGCTGGGCCAGATCTTTAAA-AACTAGAAACTGTATTTGGTCATGCTGATTA
1 TATGATTCTAATTGGCTGGGCCAGATC-TTAAAGAACTAGAAACTACATTTGGTCATGCTGATTA
85070850 ATGGAAT
65 ATGGAAT
85070857 T
1 T
85070858 CCACCAATCT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 63 0.93
72 5 0.07
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (71 bp):
TATGATTCTAATTGGCTGGGCCAGATCTTAAAGAACTAGAAACTACATTTGGTCATGCTGATTAA
TGGAAT
Found at i:85073265 original size:3 final size:3
Alignment explanation
Indices: 85073259--85073477 Score: 117
Period size: 3 Copynumber: 73.3 Consensus size: 3
85073249 ATAATAATAA
* * * **
85073259 TAT TAT TAT TTT TAC TAT TAT TGTT TAT TAT CGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* * *
85073305 T-T TAT T-T TAC TAT TAT T-T ATAT TCAT TAT TGT TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
85073349 CAT TAT TAT TTT TAC TAT TAC TAT TAT TTT CTAT AAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* ** * * * *
85073394 CTAT CAT TAT TAT TAT TAT T-T TCC TAT TAT TAT CAT CAT CAT CAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
85073439 CAT CAT CAT CAT TAT TA- TCT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
85073478 TTTAAAACCA
Statistics
Matches: 168, Mismatches: 37, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
2 9 0.05
3 150 0.89
4 9 0.05
ACGTcount: A:0.28, C:0.10, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:85073604 original size:20 final size:19
Alignment explanation
Indices: 85073577--85073618 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
85073567 TACTATTTCA
*
85073577 TTTATTA-TTCCTTTATTAT
1 TTTATTATTTCATTT-TTAT
85073596 TTTATTTATTTCATTTTTAT
1 TTTA-TTATTTCATTTTTAT
85073616 TTT
1 TTT
85073619 GTTTTTGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 10 0.50
21 6 0.30
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTATTATTTCATTTTTAT
Found at i:85079038 original size:16 final size:17
Alignment explanation
Indices: 85079017--85079049 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
85079007 CACATTGAAG
85079017 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
85079033 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
85079050 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:85079918 original size:60 final size:59
Alignment explanation
Indices: 85079847--85079982 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
85079837 AGTGTTAACT
85079847 GGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCT-TACAGTAA-C-AGAGTATACTG
1 GGCC-TAGCCCATATCAATATTAATCTGGGCCATAG-CCCTATACA--AATCGAGA-TATACTG
* * *
85079908 GGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATACAAATCGAGATATATTG
1 GGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATACAAATCGAGATATACTG
*
85079967 GGCCTTGCCCATATCA
1 GGCCTAGCCCATATCA
85079983 GCACAGTTGG
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
58 2 0.03
59 26 0.38
60 36 0.53
61 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (59 bp):
GGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATACAAATCGAGATATACTG
Found at i:85088286 original size:21 final size:20
Alignment explanation
Indices: 85088261--85088299 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
85088251 ATTTATTTAT
*
85088261 TTTAATTACCTAAACCCAAAA
1 TTTAACTACC-AAACCCAAAA
*
85088282 TTTAACTACCCAACCCAA
1 TTTAACTACCAAACCCAA
85088300 CCAACAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.26
Consensus pattern (20 bp):
TTTAACTACCAAACCCAAAA
Found at i:85090078 original size:64 final size:64
Alignment explanation
Indices: 85089969--85090090 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
85089959 TTTTGTGCTT
* *
85089969 TTTTTGTTGATTTACTCTACAGAAACTCAAAGAAAAAGCTGCATTCAGAAACCCAGATTCACTC
1 TTTTTGTTGATTTACTCTACAGAAACTCAAAGAAAAACCTACATTCAGAAACCCAGATTCACTC
* * *
85090033 TTTTTGTTGATTTACTCTACAGAAACTCAAGGACAAACCTACATTCAGAAACCTAGAT
1 TTTTTGTTGATTTACTCTACAGAAACTCAAAGAAAAACCTACATTCAGAAACCCAGAT
85090091 GAATTTTACT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (64 bp):
TTTTTGTTGATTTACTCTACAGAAACTCAAAGAAAAACCTACATTCAGAAACCCAGATTCACTC
Found at i:85092179 original size:24 final size:24
Alignment explanation
Indices: 85092147--85092195 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
85092137 ATTTATCATA
85092147 TTAATTTGTGATACTTCTATAGTG
1 TTAATTTGTGATACTTCTATAGTG
85092171 TTAATTTGTGATACTTCTATAGTG
1 TTAATTTGTGATACTTCTATAGTG
85092195 T
1 T
85092196 CAGAAATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.51
Consensus pattern (24 bp):
TTAATTTGTGATACTTCTATAGTG
Found at i:85094201 original size:21 final size:20
Alignment explanation
Indices: 85094176--85094214 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
85094166 AATATATAAT
*
85094176 TTTAATTACCTAAACCCAAAA
1 TTTAACTACC-AAACCCAAAA
*
85094197 TTTAACTACCCAACCCAA
1 TTTAACTACCAAACCCAA
85094215 CCAACAATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.26
Consensus pattern (20 bp):
TTTAACTACCAAACCCAAAA
Found at i:85097561 original size:17 final size:17
Alignment explanation
Indices: 85097516--85097607 Score: 70
Period size: 17 Copynumber: 5.5 Consensus size: 17
85097506 AGTAAATGAA
*
85097516 AGAAAAAGGAATGAAAT
1 AGAAAAAGGAATGAAAC
*
85097533 A-AAAGAATGAATGAAAC
1 AGAAA-AAGGAATGAAAC
*
85097550 AGAATAAGGAATGAAAC
1 AGAAAAAGGAATGAAAC
85097567 AGAGAAGGAAGGAA-GAAA-
1 AGA-AA--AAGGAATGAAAC
*
85097585 AG--AAAGGAAAGAAA-
1 AGAAAAAGGAATGAAAC
85097599 AGAAAAAGG
1 AGAAAAAGG
85097608 GAAAATTGAG
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
13 6 0.10
14 6 0.10
15 1 0.02
16 8 0.13
17 26 0.42
18 5 0.08
19 4 0.06
20 6 0.10
ACGTcount: A:0.64, C:0.02, G:0.27, T:0.07
Consensus pattern (17 bp):
AGAAAAAGGAATGAAAC
Found at i:85098646 original size:6 final size:6
Alignment explanation
Indices: 85098635--85098667 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
85098625 TGTGTACCGC
*
85098635 TACTGT TACTGT TACTGT TACTGT TACCGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
85098668 GGTGTATTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:85098858 original size:24 final size:22
Alignment explanation
Indices: 85098812--85098858 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
85098802 ATTTGACTGT
* *
85098812 TACTGAATAAATGATTGACTGA
1 TACTGAATAAATGATTAAATGA
85098834 TACTGAATAATAATGATTAAATGA
1 TACTGAAT-A-AATGATTAAATGA
85098858 T
1 T
85098859 TGTTATTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 1 0.05
24 12 0.57
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (22 bp):
TACTGAATAAATGATTAAATGA
Found at i:85105051 original size:20 final size:19
Alignment explanation
Indices: 85105024--85105065 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
85105014 TGCTATTTCA
*
85105024 TTTATTA-TTCCTTTATTAT
1 TTTATTATTTCATTT-TTAT
85105043 TTTATTTATTTCATTTTTAT
1 TTTA-TTATTTCATTTTTAT
85105063 TTT
1 TTT
85105066 GTTTTTGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 10 0.50
21 6 0.30
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTATTATTTCATTTTTAT
Found at i:85110882 original size:27 final size:26
Alignment explanation
Indices: 85110852--85111028 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 26
85110842 AAATTGTACA
* *
85110852 GCACTAAGGGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
85110879 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
85110906 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
85110933 GCACTAAGTGTGCGAGTTGGACTATGTG
1 GCACTAAGTGTGCGA-TT-GACTATGTG
* * *
85110961 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
85110988 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
85111015 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
85111029 GGCTCAATAA
Statistics
Matches: 128, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.78
28 27 0.21
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:85110966 original size:82 final size:81
Alignment explanation
Indices: 85110852--85111007 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
85110842 AAATTGTACA
* *
85110852 GCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85110916 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* * ** *
85110933 GCACTAAGTGTGCGAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGGGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85110998 TGCGAGTTGA
65 TGCGAATTGA
85111008 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 50 0.77
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85111019 original size:82 final size:81
Alignment explanation
Indices: 85110848--85111028 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
85110838 GATTAAATTG
* * *
85110848 TACAGCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85110913 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
85110929 TGCGGCACTAAGTGTGCGAGTTGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85110993 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85111011 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85111029 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85119667 original size:29 final size:31
Alignment explanation
Indices: 85119618--85119687 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 31
85119608 TTTTATAGTT
85119618 TTTTAATTAGATAATTATTATT-TATTTAATA
1 TTTTAATTAGATAATTATTATTAT-TTTAATA
*
85119649 TTTTAA-TA-ATATATT-TTATTATTTTATTA
1 TTTTAATTAGATA-ATTATTATTATTTTAATA
*
85119678 TTTTATTTAG
1 TTTTAATTAG
85119688 TCTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
29 19 0.58
30 8 0.24
31 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (31 bp):
TTTTAATTAGATAATTATTATTATTTTAATA
Found at i:85119683 original size:8 final size:8
Alignment explanation
Indices: 85119660--85119684 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
85119650 TTTAATAATA
85119660 TATTTTAT
1 TATTTTAT
85119668 TATTTTAT
1 TATTTTAT
85119676 TATTTTAT
1 TATTTTAT
85119684 T
1 T
85119685 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:85126392 original size:19 final size:18
Alignment explanation
Indices: 85126359--85126406 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
85126349 ATTTTCCCTT
* *
85126359 TTTCTTTTTCTTTTCTTC-
1 TTTCTTTCTCTTTTC-ACG
85126377 TTTCTTTCTCTCTTTCACG
1 TTTCTTTCTCT-TTTCACG
85126396 TTTCTTTCTCT
1 TTTCTTTCTCT
85126407 GTAACTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTCTTTCTCTTTTCACG
Found at i:85126426 original size:27 final size:27
Alignment explanation
Indices: 85126396--85126450 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
85126386 CTCTTTCACG
85126396 TTTCTTTCTCTGTAAC-TTTCTATTATT
1 TTTCTTTCT-TGTAACTTTTCTATTATT
* *
85126423 TTTCTTTCTTTTTACTTTTCTATTATT
1 TTTCTTTCTTGTAACTTTTCTATTATT
85126450 T
1 T
85126451 CATTTCTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.13, C:0.16, G:0.02, T:0.69
Consensus pattern (27 bp):
TTTCTTTCTTGTAACTTTTCTATTATT
Found at i:85127846 original size:17 final size:17
Alignment explanation
Indices: 85127824--85127869 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
85127814 AGTGTGAACT
*
85127824 GTGAACTGTGAACCACC
1 GTGAACCGTGAACCACC
*
85127841 GTGAACCGTGAACCACT
1 GTGAACCGTGAACCACC
85127858 GTGAACCGTGAA
1 GTGAACCGTGAA
85127870 GCGTGAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.17
Consensus pattern (17 bp):
GTGAACCGTGAACCACC
Found at i:85128823 original size:24 final size:26
Alignment explanation
Indices: 85128791--85128839 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
85128781 TATAAAAAAT
85128791 TTTAATAAATA-AAAAAT-ATATAAA
1 TTTAATAAATATAAAAATAATATAAA
* *
85128815 TTTATTAAATATTAAAATAATATAA
1 TTTAATAAATATAAAAATAATATAA
85128840 TATAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 5 0.24
26 6 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
TTTAATAAATATAAAAATAATATAAA
Found at i:85132653 original size:26 final size:26
Alignment explanation
Indices: 85132624--85132783 Score: 266
Period size: 26 Copynumber: 6.2 Consensus size: 26
85132614 TGATACAAAT
85132624 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85132650 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85132676 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85132702 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85132728 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85132754 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85132780 TGAT
1 TGAT
85132784 GGACATTTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 123 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85132681 original size:52 final size:52
Alignment explanation
Indices: 85132624--85132783 Score: 293
Period size: 52 Copynumber: 3.1 Consensus size: 52
85132614 TGATACAAAT
85132624 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
85132676 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
85132728 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
85132780 TGAT
1 TGAT
85132784 GGACATTTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:85138520 original size:21 final size:22
Alignment explanation
Indices: 85138478--85138522 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
85138468 TACACTATAT
**
85138478 TTTATATTTTTTTTACTTAAAG
1 TTTATATTTTTTTTACAAAAAG
85138500 TTTA-ATTTTTTTTACAAAAAG
1 TTTATATTTTTTTTACAAAAAG
85138521 TT
1 TT
85138523 AACATTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
TTTATATTTTTTTTACAAAAAG
Found at i:85138616 original size:14 final size:15
Alignment explanation
Indices: 85138599--85138627 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85138589 AAGTGTGGTA
85138599 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
85138613 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
85138628 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:85142630 original size:3 final size:3
Alignment explanation
Indices: 85142616--85142757 Score: 105
Period size: 3 Copynumber: 48.0 Consensus size: 3
85142606 TGATACTATG
* * *
85142616 AAT AAGT AAT AAT AAT AA- AAT AAT GAAT AAT AAT AAT CAC AAC AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* * *
85142662 -AT AAAT AAT AAT AAA AAC AAT AAT AGT AAT AA- AAT -AT AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
85142705 AGT AAT -AC AAT AGT AAT AAT AAC AAT AAT ATT AAT AAA AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85142752 AAT AAT
1 AAT AAT
85142758 TTTAAACAAA
Statistics
Matches: 108, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
2 9 0.08
3 91 0.84
4 8 0.07
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:85142703 original size:10 final size:11
Alignment explanation
Indices: 85142683--85142723 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
85142673 TAAAAACAAT
85142683 AATAGTAATAA
1 AATAGTAATAA
85142694 AATA-TAAT--
1 AATAGTAATAA
*
85142702 AATAGTAATAC
1 AATAGTAATAA
85142713 AATAGTAATAA
1 AATAGTAATAA
85142724 TAACAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 4 0.15
9 4 0.15
10 4 0.15
11 14 0.54
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (11 bp):
AATAGTAATAA
Found at i:85142763 original size:21 final size:22
Alignment explanation
Indices: 85142722--85142773 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
85142712 CAATAGTAAT
*
85142722 AATAACAATAATATTAATAAA-
1 AATAAAAATAATATTAATAAAC
*
85142743 AATAAAAATAATAATT-TTAAAC
1 AATAAAAATAAT-ATTAATAAAC
85142765 AA-AAAAATA
1 AATAAAAATA
85142774 GCAAAATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (22 bp):
AATAAAAATAATATTAATAAAC
Found at i:85144221 original size:44 final size:44
Alignment explanation
Indices: 85144168--85145090 Score: 405
Period size: 44 Copynumber: 21.1 Consensus size: 44
85144158 CAACTTCAGG
** *
85144168 GAGATAAGATCTGCAATCTTCAGTCTGCTCCTGTACTGCTTTGA
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * *
85144212 GAGATAAGATCTGCAATCTTCAGCCTGTTCCATTACTGCTTAGA
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * * * * * * *
85144256 AAGATAAG-GCT--AGTGGCTTAAATCTGCCTCC-CTGCTACCTCGA
1 GAGATAAGATCTGCAAT--CTTCAGTCTG-CTCCACTACTGCTTAGA
* * * * *
85144299 GAAGATAAGATTTACTATCATT-AATCTGCTCCACTACTGCTTAGG
1 G-AGATAAGATCTGCAATC-TTCAGTCTGCTCCACTACTGCTTAGA
* * * * *
85144344 GAGATAAGATCTGTAATTTTCAGCCTGCTCCACTGCTGCTCAGA
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * *
85144388 GAGATAAG-GCT-CACCGTCTTCAATCTGCTCTACTACTGCTTAGA
1 GAGATAAGATCTGCA--ATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * * * *
85144432 GAGATAAGATCTGTAATTTTCAGACTGCTCCACTACTACTTTGG
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* *
85144476 GAGATAAGA-CT-CACGTCTTC-GATCTGCTCCACTACTGCTTAGG
1 GAGATAAGATCTGCA-ATCTTCAG-TCTGCTCCACTACTGCTTAGA
* * * * *
85144519 GAGATAAGATTTGTAATTTTCAGCCTGCTCCACTACTGCTTAGG
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * ** *
85144563 GAGATAAGGGTC-ACCGTCTTC-GATCTACTCCACTACTGCTTA-A
1 GAGATAA-GATCTGCAATCTTCAG-TCTGCTCCACTACTGCTTAGA
* * * * *
85144606 GGAGATAAGATTTGTAATTTTTAG-CTTGCTCCACTACTGCTTAAA
1 -GAGATAAGATCTGCAATCTTCAGTC-TGCTCCACTACTGCTTAGA
* * * *
85144651 GAGATAAG-GCT-CACCATCTT-TGATCTGCTCCACTACTACTTAGG
1 GAGATAAGATCTGCA--ATCTTCAG-TCTGCTCCACTACTGCTTAGA
* ** * * * *
85144695 GAGATAATATCTATAATTTTTAGCCTGCTCCACTACTGCTTAGG
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * * * * *
85144739 GAGATAAG-GCT-CACCGTTTTC-GACCTGCTCCATTACTACTTAGG
1 GAGATAAGATCTGCA--ATCTTCAG-TCTGCTCCACTACTGCTTAGA
* * ** * * *
85144783 GAGATATGATCTACAATCTTCAACCTACTCCACTATTGCTTAGG
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * *
85144827 GAGATATGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGG
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * *
85144871 GAGATAGGA--TG--GTCTTC-GATCTGCTCCACCACTGCCTA-A
1 GAGATAAGATCTGCAATCTTCAG-TCTGCTCCACTACTGCTTAGA
* * * * *
85144910 GGAGACAAGA-CTTACAATCTTCAGCCTACTCCACTACTGCTTAGG
1 -GAGATAAGATC-TGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * **** * * * * * *
85144955 GACAT-AGA-ATGGTGGCTTAAATTTGTTCCACTACTACTTAGG
1 GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
* * * * *
85144997 GAGATAAAATTTGCCATCTTC-GATCTACTCCACTACTGCTTAGG
1 GAGATAAGATCTGCAATCTTCAG-TCTGCTCCACTACTGCTTAGA
** * * *
85145041 GAGGCAAGATCTACAATCTTCA-TCCTACTCCATTACTGCTTAGA
1 GAGATAAGATCTGCAATCTTCAGT-CTGCTCCACTACTGCTTAGA
85145085 GAGATA
1 GAGATA
85145091 GGGTGGTGGC
Statistics
Matches: 653, Mismatches: 174, Indels: 104
0.70 0.19 0.11
Matches are distributed among these distances:
39 1 0.00
40 27 0.04
41 2 0.00
42 33 0.05
43 68 0.10
44 484 0.74
45 31 0.05
46 6 0.01
47 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
GAGATAAGATCTGCAATCTTCAGTCTGCTCCACTACTGCTTAGA
Found at i:85144393 original size:88 final size:88
Alignment explanation
Indices: 85144322--85144832 Score: 691
Period size: 88 Copynumber: 5.8 Consensus size: 88
85144312 ACTATCATTA
* *
85144322 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
* *
85144387 AGAGATAAGGCTCACCGTCTTCA
66 GGAGATAAGGCTCACCGTCTTCG
* * * * *
85144410 ATCTGCTCTACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGACTGCTCCACTACTACTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
*
85144475 GGAGATAAGACTCA-CGTCTTCG
66 GGAGATAAGGCTCACCGTCTTCG
*
85144497 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
*
85144562 GGAGATAAGGGTCACCGTCTTCG
66 GGAGATAAGGCTCACCGTCTTCG
* * * * * *
85144585 ATCTACTCCACTACTGCTTAAGGAGATAAGATTTGTAATTTTTAGCTTGCTCCACTACTGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
* * *
85144650 AGAGATAAGGCTCACCATCTTTG
66 GGAGATAAGGCTCACCGTCTTCG
* * * *
85144673 ATCTGCTCCACTACTACTTAGGGAGATAATATCTATAATTTTTAGCCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
*
85144738 GGAGATAAGGCTCACCGTTTTCG
66 GGAGATAAGGCTCACCGTCTTCG
* * * * ** * * * *
85144761 ACCTGCTCCATTACTACTTAGGGAGATATGATCTACAATCTTCAACCTACTCCACTATTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
85144826 GGAGATA
66 GGAGATA
85144833 TGATCTGCAA
Statistics
Matches: 373, Mismatches: 49, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
87 78 0.21
88 295 0.79
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (88 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGCTCCACTACTGCTTAG
GGAGATAAGGCTCACCGTCTTCG
Found at i:85144768 original size:132 final size:133
Alignment explanation
Indices: 85144324--85144956 Score: 488
Period size: 132 Copynumber: 4.8 Consensus size: 133
85144314 TATCATTAAT
* * * *
85144324 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA-ATTTTC-AGCCTGCTCCACTGCTGCTCAG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCACGTTTTCGA-CCTGCTCCACTACTGCTTAG
** * * * *
85144387 AGAGATAAGGCTCACCGTCTTCAATCTGCTCTACTACTGCTTAGAGAGATAAGATCTGTAATTTT
65 AGAGATAAGGCTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTT
*
85144452 CAGA
130 CAGC
* * * * *
85144456 CTGCTCCACTACTACTTTGGGAGATAAGA-CT-CACGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCACGTTTTCGACCTGCTCCACTACTGCTTAGA
** *** * * * *** *
85144519 GAGATAAGATTTGTAATTTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGGGTC-ACCGTCTT
66 GAGATAAGGCTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAA-GATCTATAATTTT
*
85144583 C-GAT
130 CAG-C
* * * * ** * * *
85144587 CTACTCCACTACTGCTTAAGGAGATAAGATTTGTAATTTTTAG-CTTGCTCCACTACTGCTTAAA
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCACGTTTTCGACCTGCTCCACTACTGCTTAGA
* ** * * * *
85144651 GAGATAAGGCTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGATAATATCTATAATTTTT
66 GAGATAAGGCTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTC
85144716 AGC
131 AGC
* * *
85144719 CTGCTCCACTACTGCTTAGGGAGATAAG-GCT-CACCGTTTTCGACCTGCTCCATTACTACTTAG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA-CGTTTTCGACCTGCTCCACTACTGCTTAG
* * * * * * ** *
85144782 GGAGAT-ATGATCTACAATCTTCAACCTACTCCACTATTGCTTAGGGAGATATGATCTGCAATCT
65 AGAGATAAGGCTC-ACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTT
85144846 TCAGC
129 TCAGC
* * * * * *
85144851 CTACTCCACTACTGCTTAGGGAGATAGGA--TG---GTCTTCGATCTGCTCCACCACTGCCTA-A
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCACGTTTTCGACCTGCTCCACTACTGCTTAGA
* * * * *
85144910 GGAGACAAGACTTACAATCTTCAGCCTACTCCACTACTGCTTAGGGA
66 -GAGATAAGGCTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGA
85144957 CATAGAATGG
Statistics
Matches: 380, Mismatches: 106, Indels: 34
0.73 0.20 0.07
Matches are distributed among these distances:
128 57 0.15
129 2 0.01
130 3 0.01
131 104 0.27
132 208 0.55
133 6 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (133 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCACGTTTTCGACCTGCTCCACTACTGCTTAGA
GAGATAAGGCTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTC
AGC
Found at i:85145223 original size:44 final size:44
Alignment explanation
Indices: 85145117--85145365 Score: 176
Period size: 44 Copynumber: 5.8 Consensus size: 44
85145107 CTATGATATG
* * *
85145117 CAATCTTCAGCCTACTCCACTACTACTTAGGGAGA-TAGA---A
1 CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGACAAGATCTA
** * *
85145157 TGATCTTC-GATCTGCTCCACTACTGCTTAGAGAGACAAGATCTA
1 CAATCTTCAG-TCTACTCCACTACTGCTTAGGGAGACAAGATCTA
* * * *
85145201 CAATCTTCAGTCTACTCTACTACTGCTTAGGGAGATAGGATGGT-
1 CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGACAAGAT-CTA
* * * * * * *
85145245 ---TGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAAATTTT
1 CAAT-CTTCAGTCTACTCCACTACTGCTTAGGGAGACAAGATCTA
* * *
85145287 CCATCTT-TGATCTACTCCACTATTGCTTAGGGAGACAAGATCTA
1 CAATCTTCAG-TCTACTCCACTACTGCTTAGGGAGACAAGATCTA
* * *
85145331 CAATCCTCAGCCTACTCCACTATTGCTTAGGGAGA
1 CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGA
85145366 TTGGGTGATG
Statistics
Matches: 159, Mismatches: 36, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
39 1 0.01
40 27 0.17
41 5 0.03
42 29 0.18
44 93 0.58
45 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGACAAGATCTA
Found at i:85145225 original size:147 final size:149
Alignment explanation
Indices: 85144981--85145253 Score: 417
Period size: 147 Copynumber: 1.8 Consensus size: 149
85144971 TTAAATTTGT
* *
85144981 TCCACTACTACTTAGGGAGATAAAATTTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGGC
1 TCCACTACTACTTAGGGAGATAAAA-TTG-CATCTTCGATCTACTCCACTACTGCTTAGAGAGAC
* *
85145046 AAGATCTACAATCTTCATCCTACTCCATTACTGCTTAGAGAGATAGGGTGGTGGCTTAAATCTAT
64 AAGATCTACAATCTTCATCCTACTCCACTACTGCTTAGAGAGATAGGATGGTGGCTTAAATCTAT
85145111 GATATGCAATCTTCAGCCTAC
129 GATATGCAATCTTCAGCCTAC
* *
85145132 TCCACTACTACTTAGGGAGATAGAA-TG-ATCTTCGATCTGCTCCACTACTGCTTAGAGAGACAA
1 TCCACTACTACTTAGGGAGATAAAATTGCATCTTCGATCTACTCCACTACTGCTTAGAGAGACAA
* * *
85145195 GATCTACAATCTTCAGT-CTACTCTACTACTGCTTAGGGAGATAGGATGGTTGCTTAAAT
66 GATCTACAATCTTCA-TCCTACTCCACTACTGCTTAGAGAGATAGGATGGTGGCTTAAAT
85145254 TTGCTCCACT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
147 85 0.76
148 1 0.01
149 2 0.02
151 24 0.21
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (149 bp):
TCCACTACTACTTAGGGAGATAAAATTGCATCTTCGATCTACTCCACTACTGCTTAGAGAGACAA
GATCTACAATCTTCATCCTACTCCACTACTGCTTAGAGAGATAGGATGGTGGCTTAAATCTATGA
TATGCAATCTTCAGCCTAC
Found at i:85145301 original size:86 final size:84
Alignment explanation
Indices: 85145117--85145321 Score: 241
Period size: 86 Copynumber: 2.4 Consensus size: 84
85145107 CTATGATATG
* * **
85145117 CAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCTCCACTACTG
1 CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGATAGAATGATCTTAAATCTGCTCCACTACTG
*
85145182 CTTAGAGAGACAAGATCTA
66 CTTAGAGAGACAAAATCTA
* * * *
85145201 CAATCTTCAGTCTACTCTACTACTGCTTAGGGAGATAGGATGGTTGCTTAAATTTGCTCCACTAC
1 CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGATAGAAT-GAT-CTTAAATCTGCTCCACTAC
* * *
85145266 TGCTTAGGGAGACAAAATTTT
64 TGCTTAGAGAGACAAAATCTA
* * *
85145287 CCATCTT-TGATCTACTCCACTATTGCTTAGGGAGA
1 CAATCTTCAG-TCTACTCCACTACTGCTTAGGGAGA
85145322 CAAGATCTAC
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
84 37 0.36
85 3 0.03
86 62 0.61
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (84 bp):
CAATCTTCAGTCTACTCCACTACTGCTTAGGGAGATAGAATGATCTTAAATCTGCTCCACTACTG
CTTAGAGAGACAAAATCTA
Found at i:85145328 original size:130 final size:129
Alignment explanation
Indices: 85145159--85145886 Score: 812
Period size: 130 Copynumber: 5.6 Consensus size: 129
85145149 AGATAGAATG
* * * *
85145159 ATCTTCGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTCAGTCTACTCTACTAC
1 ATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAG-CTACTCCACTAC
* * *
85145224 TGCTTAGGGAGATAGGATGGTTGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAAATTTTCC
65 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTGCTTAGGGAGACAAAATTTTCC
* * *
85145289 ATCTTTGATCTACTCCACTATTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCACTAT
1 ATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAG-CTACTCCACTAC
* * * * * * *
85145354 TGCTTAGGGAGATTGGGTGATGGCTTAAATCTACTCTACTATTTCTTAGGGACACAAAATTTTCC
65 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTGCTTAGGGAGACAAAATTTTCC
* * * * *
85145419 ATCTTCGATCTACTCCTCTACTGCTCAGGGAGACAAGATCTACAATCCTCAGCCAACTCCGCTAT
1 ATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAG-CTACTCCACTAC
* * * *** *
85145484 TACTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTACTTAGGGAGATAAGGCTTACC
65 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTGCTTAGGGAGACAAAATTTTCC
* * * * * * ** * * *
85145549 GTCTTTGATCTGCTCCACTACTACTTAGGGAGATATA-ATATGTAATCTTCAGCGTGCTCCACTG
1 ATCTTCGATCTACTCCACTACTGCTTAGGGAGACA-AGATCTACAATCCTCAGC-TACTCCACTA
* * * *
85145613 CTGCTCAGGGAGATAGGGTGGTGGCTTAAATCTACTCCAATACTGCTTAGGGAGACAAAGTTTGT
64 CTGCTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTGCTTAGGGAGACAAAATTT-T
85145678 -C
128 CC
* * * *
85145679 ATCTTCGATCTGCTCCTCTACTGCTTAAGGAGACAAGATCTACAATCCTCAGCTTACTCCGCTAC
1 ATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAGC-TACTCCACTAC
* * * * * * *
85145744 TGCTTAGGGAGTTAGGGTAGTGGCTTAAATTTGCTTCACTAATGCTTAGGGAGACAAGATTTGCC
65 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTGCTTAGGGAGACAAAATTTTCC
* ** * * **
85145809 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCATCAATCTGTTCCACTAC
1 ATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTC-AGCTACTCCACTAC
85145874 TGCTTAGGGAGAT
65 TGCTTAGGGAGAT
85145887 GAGGCTAATC
Statistics
Matches: 493, Mismatches: 99, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
129 2 0.00
130 488 0.99
131 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (129 bp):
ATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCTACTCCACTACT
GCTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTGCTTAGGGAGACAAAATTTTCC
Found at i:85145332 original size:277 final size:277
Alignment explanation
Indices: 85144831--85145386 Score: 855
Period size: 277 Copynumber: 2.0 Consensus size: 277
85144821 CTTAGGGAGA
* * * *
85144831 TATGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTCTTCGATCTGCT
1 TATGATATGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCT
85144896 CCACCACTGCCTAAGGAGACAAGACTTACAATCTTCAGCCTACTCCACTACTGCTTAGGGACATA
66 CCACCACTGCCTAAGGAGACAAGACTTACAATCTTCAGCCTACTCCACTACTGCTTAGGGACATA
* *
85144961 GAATGGTGGCTTAAATTTGTTCCACTACTACTTAGGGAGATAAAATTTGCCATCTTCGATCTACT
131 GAATGGTGGCTTAAATTTGCTCCACTACTACTTAGGGAGACAAAATTTGCCATCTTCGATCTACT
* * * *
85145026 CCACTACTGCTTAGGGAGGCAAGATCTACAATCTTCATCCTACTCCATTACTGCTTAGAGAGATA
196 CCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCACTACTGCTTAGAGAGATA
*
85145091 GGGTGGTGGCTTAAATC
261 GGGTGATGGCTTAAATC
85145108 TATGATATGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCT
1 TATGATATGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCT
* * * * *
85145173 CCACTACTG-CTTAGAGAGACAAGA-TCTACAATCTTCAGTCTACTCTACTACTGCTTAGGGAGA
66 CCACCACTGCCTAAG-GAGACAAGACT-TACAATCTTCAGCCTACTCCACTACTGCTTAGGGACA
* * * * *
85145236 TAGGATGGTTGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAAATTTTCCATCTTTGATCTA
129 TAGAATGGTGGCTTAAATTTGCTCCACTACTACTTAGGGAGACAAAATTTGCCATCTTCGATCTA
* * *
85145301 CTCCACTATTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCACTATTGCTTAGGGAGA
194 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCACTACTGCTTAGAGAGA
*
85145366 TTGGGTGATGGCTTAAATC
259 TAGGGTGATGGCTTAAATC
85145385 TA
1 TA
85145387 CTCTACTATT
Statistics
Matches: 252, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
276 5 0.02
277 247 0.98
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (277 bp):
TATGATATGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCT
CCACCACTGCCTAAGGAGACAAGACTTACAATCTTCAGCCTACTCCACTACTGCTTAGGGACATA
GAATGGTGGCTTAAATTTGCTCCACTACTACTTAGGGAGACAAAATTTGCCATCTTCGATCTACT
CCACTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCACTACTGCTTAGAGAGATA
GGGTGATGGCTTAAATC
Found at i:85145625 original size:260 final size:259
Alignment explanation
Indices: 85145159--85145886 Score: 929
Period size: 260 Copynumber: 2.8 Consensus size: 259
85145149 AGATAGAATG
* * * * **
85145159 ATCTTCGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTCAGTCTACTCTACTAC
1 ATCTTCGATCTGCTCCTCTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCGCTAC
* * * *
85145224 TGCTTAGGGAGATAGGATGGTTGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAAATTTTCC
66 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAGATTTACC
* * ** * * *
85145289 ATCTTTGATCTACTCCACTATTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCACTAT
131 ATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCATCAG-CTGCTCCACTAC
* * * * *
85145354 TGCTTAGGGAGATTGGGTGATGGCTTAAATCTACTCTACTATTTCTTAGGGACACAAAATTT-TC
195 TGCTTAGGGAGATAGGGTGATGGCTTAAATCTACTCCAATACTGCTTAGGGACACAAAATTTGT-
85145418 C
259 C
* * * *
85145419 ATCTTCGATCTACTCCTCTACTGCTCAGGGAGACAAGATCTACAATCCTCAGCCAACTCCGCTAT
1 ATCTTCGATCTGCTCCTCTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCGCTAC
* * * * **
85145484 TACTTAGGGAGATAGGGTGGTGGCTTAAATTTACTCCACTACTACTTAGGGAGATAAGGCTTACC
66 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAGATTTACC
* * * * * *
85145549 GTCTTTGATCTGCTCCACTACTACTTAGGGAGATATA-ATATGTAATCTTCAGCGTGCTCCACTG
131 ATCTTTGATCTACTCCACTACTGCTTAGGGAGATA-AGATCTGTAATCATCAGC-TGCTCCACTA
* * * *
85145613 CTGCTCAGGGAGATAGGGTGGTGGCTTAAATCTACTCCAATACTGCTTAGGGAGACAAAGTTTGT
194 CTGCTTAGGGAGATAGGGTGATGGCTTAAATCTACTCCAATACTGCTTAGGGACACAAAATTTGT
85145678 C
259 C
* *
85145679 ATCTTCGATCTGCTCCTCTACTGCTTAAGGAGACAAGATCTACAATCCTCAGCTTACTCCGCTAC
1 ATCTTCGATCTGCTCCTCTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCGCTAC
* * * * *
85145744 TGCTTAGGGAGTTAGGGTAGTGGCTTAAATTTGCTTCACTAATGCTTAGGGAGACAAGATTTGCC
66 TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAGATTTACC
* * *
85145809 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCATCAATCTGTTCCACTAC
131 ATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCATC-AGCTGCTCCACTAC
85145874 TGCTTAGGGAGAT
195 TGCTTAGGGAGAT
85145887 GAGGCTAATC
Statistics
Matches: 395, Mismatches: 68, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
259 2 0.01
260 389 0.98
261 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (259 bp):
ATCTTCGATCTGCTCCTCTACTGCTTAGGGAGACAAGATCTACAATCCTCAGCCTACTCCGCTAC
TGCTTAGGGAGATAGGGTGGTGGCTTAAATTTGCTCCACTACTGCTTAGGGAGACAAGATTTACC
ATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCATCAGCTGCTCCACTACT
GCTTAGGGAGATAGGGTGATGGCTTAAATCTACTCCAATACTGCTTAGGGACACAAAATTTGTC
Found at i:85145884 original size:390 final size:386
Alignment explanation
Indices: 85145129--85145886 Score: 943
Period size: 390 Copynumber: 2.0 Consensus size: 386
85145119 ATCTTCAGCC
*
85145129 TACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCTCCACTACTGCTTAGAGAGACA
1 TACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCTCCACTACTACTTAGAGAGACA
* * * * * *
85145194 AGATCTACAATCTTCAGTCTACTCTACTACTGCTTAGGGAGATAGGATGGTTGCTTAAATTTGCT
66 AGATATACAATCTTCAGTCTACTCCACTACTGCTCAGGGAGATAGGATGGTGGCTTAAATCTACT
* * * *
85145259 CCACTACTGCTTAGGGAGACAAAATTTTCCATCTTTGATCTACTCCACTATTGCTTAGGGAGACA
131 CCAATACTGCTTAGGGAGACAAAATTTTCCATCTTCGATCTACTCCACTACTGCTTAAGGAGACA
*
85145324 AGATCTACAATCCTCAGCCTACTCCACTATTGCTTAGGGAGATTGGGTGATGGCTTAAATCTACT
196 AGATCTACAATCCTCAGCCTACTCCACTACTGCTTAGGGAGATTGGGTGATGGCTTAAATCTACT
* * * *
85145389 CTACTATTTCTTAGGGACACAAAATTTTCCATCTTCGATCTACTCCTCTACTGCTCAGGGAGACA
261 CTACTAATGCTTAGGGACACAAAATTTGCCATCTTCGATCTACTCCACTACTGCTCAGGGAGACA
* * * *
85145454 AGATCTACAATCCTCAGCCAACTCCGCTATTACTTAGGGAGATAGGGTGGTGGCTTAAATT
326 AGATCTACAATCATCAACCAACTCCACTACTACTTAGGGAGATAGGGTGGTGGCTTAAATT
** * * *
85145515 TACTCCACTACTACTTAGGGAGATAAGGCTTACCGTCTTTGATCTGCTCCACTACTACTTAGGGA
1 TACTCCACTACTACTTAGGGAGAT-AGAATGA---TCTTCGATCTGCTCCACTACTACTTAGAGA
* ** * * *
85145580 GATATA-ATATGTAATCTTCAG-CGTGCTCCACTGCTGCTCAGGGAGATAGGGTGGTGGCTTAAA
62 GACA-AGATATACAATCTTCAGTC-TACTCCACTACTGCTCAGGGAGATAGGATGGTGGCTTAAA
* * *
85145643 TCTACTCCAATACTGCTTAGGGAGACAAAGTTTGT-CATCTTCGATCTGCTCCTCTACTGCTTAA
125 TCTACTCCAATACTGCTTAGGGAGACAAAATTT-TCCATCTTCGATCTACTCCACTACTGCTTAA
* *
85145707 GGAGACAAGATCTACAATCCTCAGCTTACTCCGCTACTGCTTAGGGAG-TTAGGGT-AGTGGCTT
189 GGAGACAAGATCTACAATCCTCAGCCTACTCCACTACTGCTTAGGGAGATT-GGGTGA-TGGCTT
* * * *
85145770 AAATTTGCT-TCACTAATGCTTAGGGAGACAAGATTTGCCATCTTCGATCTACTCCACTACTGCT
252 AAATCTACTCT-ACTAATGCTTAGGGACACAAAATTTGCCATCTTCGATCTACTCCACTACTGCT
* * ** * *** *
85145834 TAGGGAGATAAGATCTGTAATCATCAATCTGTTCCACTACTGCTTAGGGAGAT
316 CAGGGAGACAAGATCTACAATCATCAACCAACTCCACTACTACTTAGGGAGAT
85145887 GAGGCTAATC
Statistics
Matches: 313, Mismatches: 49, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
386 24 0.08
387 4 0.01
389 5 0.02
390 278 0.89
391 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (386 bp):
TACTCCACTACTACTTAGGGAGATAGAATGATCTTCGATCTGCTCCACTACTACTTAGAGAGACA
AGATATACAATCTTCAGTCTACTCCACTACTGCTCAGGGAGATAGGATGGTGGCTTAAATCTACT
CCAATACTGCTTAGGGAGACAAAATTTTCCATCTTCGATCTACTCCACTACTGCTTAAGGAGACA
AGATCTACAATCCTCAGCCTACTCCACTACTGCTTAGGGAGATTGGGTGATGGCTTAAATCTACT
CTACTAATGCTTAGGGACACAAAATTTGCCATCTTCGATCTACTCCACTACTGCTCAGGGAGACA
AGATCTACAATCATCAACCAACTCCACTACTACTTAGGGAGATAGGGTGGTGGCTTAAATT
Found at i:85145886 original size:44 final size:44
Alignment explanation
Indices: 85145128--85145886 Score: 138
Period size: 44 Copynumber: 17.6 Consensus size: 44
85145118 AATCTTCAGC
* * * *
85145128 CTACTCCACTACTACTTAGGGAGAT-AGA-ATG--ATCTTCGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * * * * *
85145168 CTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTCAGT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * * *
85145212 CTACTCTACTACTGCTTAGGGAGATAGGATGGTTGC--T--TAAAT
1 CTACTCCACTACTGCTTAGGGAGATAAGAT--CTGCAATCATCAAT
* * * * * * * * **
85145254 TTGCTCCACTACTGCTTAGGGAGACAAAATTTTCCATCTTTGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * * * **
85145298 CTACTCCACTATTGCTTAGGGAGACAAGATCTACAATCCTCAGC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * ** * *
85145342 CTACTCCACTATTGCTTAGGGAGAT-TG-GGTG--ATGGCTTAAAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAAT--CATCAAT
* * * * * * * * * * *
85145384 CTACTCTACTATTTCTTAGGGACACAAAATTTTCCATCTTCGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * * * * **
85145428 CTACTCCTCTACTGCTCAGGGAGACAAGATCTACAATCCTCAGC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * * * * * * *
85145472 CAACTCCGCTATTACTTAGGGAGATAGGGTGGTGGC--T--TAAAT
1 CTACTCCACTACTGCTTAGGGAGATAAGAT-CT-GCAATCATCAAT
* * * * ** * **
85145514 TTACTCCACTACTACTTAGGGAGATAAG-GCTTACCGTCTTTGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATC-TGCAATCATCAAT
* * * * * *
85145558 CTGCTCCACTACTACTTAGGGAGATATA-ATATGTAATCTTC-AG
1 CTACTCCACTACTGCTTAGGGAGATA-AGATCTGCAATCATCAAT
* * * * * * *
85145601 CGTGCTCCACTGCTGCTCAGGGAGATAGGGTGGTGGC--T--TAAAT
1 C-TACTCCACTACTGCTTAGGGAGATAAGAT-CT-GCAATCATCAAT
* * * * *
85145644 CTACTCCAATACTGCTTAGGGAGACAA-AGTTTGTC-ATCTTCGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGA-TCTG-CAATCATCAAT
* * * * * * *
85145688 CTGCTCCTCTACTGCTTAAGGAGACAAGATCTACAATCCTC-AG
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
* * * * * *
85145731 CTTACTCCGCTACTGCTTAGGGAGTTAGGGTAGTGGC--T--TAAAT
1 C-TACTCCACTACTGCTTAGGGAGATAAGAT-CT-GCAATCATCAAT
* * * * * * * * *
85145774 TTGCTTCACTAATGCTTAGGGAGACAAGATTTGCCATCTTCGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
*
85145818 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCATCAAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
**
85145862 CTGTTCCACTACTGCTTAGGGAGAT
1 CTACTCCACTACTGCTTAGGGAGAT
85145887 GAGGCTAATC
Statistics
Matches: 507, Mismatches: 167, Indels: 86
0.67 0.22 0.11
Matches are distributed among these distances:
40 30 0.06
41 7 0.01
42 126 0.25
43 9 0.02
44 323 0.64
45 5 0.01
46 7 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAAT
Found at i:85156368 original size:20 final size:20
Alignment explanation
Indices: 85156343--85156383 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
85156333 ATGCAATTCT
85156343 AATTTTTAAAATAACTTTCC
1 AATTTTTAAAATAACTTTCC
*
85156363 AATTTTTAAAATAATTTTCC
1 AATTTTTAAAATAACTTTCC
85156383 A
1 A
85156384 TTATTTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTTTTAAAATAACTTTCC
Found at i:85156546 original size:12 final size:13
Alignment explanation
Indices: 85156521--85156549 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
85156511 TTGATTTCTT
85156521 TTTTTTAAATATA
1 TTTTTTAAATATA
85156534 TTTTTTAAA-ATA
1 TTTTTTAAATATA
85156546 TTTT
1 TTTT
85156550 ACTATACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTTTAAATATA
Found at i:85158208 original size:11 final size:11
Alignment explanation
Indices: 85158194--85158234 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
85158184 TATTTTCTCC
85158194 CTATTTTGCTA
1 CTATTTTGCTA
*
85158205 CTATTTTACTA
1 CTATTTTGCTA
* *
85158216 TTATGTTGCTA
1 CTATTTTGCTA
85158227 CTATTTTG
1 CTATTTTG
85158235 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:85166193 original size:133 final size:133
Alignment explanation
Indices: 85165953--85166196 Score: 305
Period size: 133 Copynumber: 1.8 Consensus size: 133
85165943 TCTCCATTAA
** * * *
85165953 TTATATATATACTTACTATTATTTAAGCGTCTAATTGAGTTAATGTCAAGAGTCAACGGGGCACC
1 TTATATATATACTTACTATTATTTAAGCCCCTAACTAAGTTAATGTCAAGAGTCAACGGGACACC
* * *
85166018 AACTTGATTAGGAAACTAACAAAAATATTCTTTTGTAATTATATTAAGTTAAATTATTCGATTGT
66 AACTCGATTAAGAAACTAACAAAAATATTCTTTTATAATTATATTAAGTTAAATTATTCGATTGT
85166083 ACT
131 ACT
* ** *
85166086 TTATATATTTACTTACTATTATTTAAGCCCCTAACTAAGTTGGTGTCATA-AGTCAATC-GGATA
1 TTATATATATACTTACTATTATTTAAGCCCCTAACTAAGTTAATGTCA-AGAGTCAA-CGGGACA
* * *
85166149 TCAACTCGGTTAAGAAACTTAA-AAAAATATTCTTTTATAGTTATATTA
64 CCAACTCGATTAAGAAAC-TAACAAAAATATTCTTTTATAATTATATTA
85166197 TTTAATGATA
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
133 88 0.95
134 5 0.05
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (133 bp):
TTATATATATACTTACTATTATTTAAGCCCCTAACTAAGTTAATGTCAAGAGTCAACGGGACACC
AACTCGATTAAGAAACTAACAAAAATATTCTTTTATAATTATATTAAGTTAAATTATTCGATTGT
ACT
Found at i:85168527 original size:51 final size:50
Alignment explanation
Indices: 85168465--85168599 Score: 139
Period size: 51 Copynumber: 2.6 Consensus size: 50
85168455 TGAAATCTTA
*
85168465 AAATGAATAATAAAAGGGTTTAAAATAAATAATAT-AGAAAAGACTTAAAAGT
1 AAAT-AATAATAAAA-GGTTTGAAATAAATAATATAAGAAAAGACTTAAAA-T
* ** * * *
85168517 ATATAATAATAAAAAAATTTGAAAT-AATAATATAATAAAAGGCTTGAAAT
1 AAATAATAAT-AAAAGGTTTGAAATAAATAATATAAGAAAAGACTTAAAAT
*
85168567 AAATAATAAATAAAAGGTTTGCAATAAATAATA
1 AAATAAT-AATAAAAGGTTTGAAATAAATAATA
85168600 AAAGTATTTG
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
50 26 0.38
51 35 0.51
52 7 0.10
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.27
Consensus pattern (50 bp):
AAATAATAATAAAAGGTTTGAAATAAATAATATAAGAAAAGACTTAAAAT
Found at i:85168578 original size:25 final size:25
Alignment explanation
Indices: 85168465--85168601 Score: 109
Period size: 25 Copynumber: 5.4 Consensus size: 25
85168455 TGAAATCTTA
*
85168465 AAATGAAT-AATAAAAGGGTTTAAAAT
1 AAAT-AATAAATAAAA-GGTTTGAAAT
* * ** *
85168491 AAATAATATAGAAAAGACTTAAAAGT
1 AAATAATAAATAAAAGGTTTGAAA-T
* **
85168517 ATATAAT-AATAAAAAAATTTGAAAT
1 AAATAATAAAT-AAAAGGTTTGAAAT
*
85168542 -AATAATATAATAAAAGGCTTGAAAT
1 AAATAATA-AATAAAAGGTTTGAAAT
*
85168567 AAATAATAAATAAAAGGTTTGCAAT
1 AAATAATAAATAAAAGGTTTGAAAT
85168592 AAATAATAAA
1 AAATAATAAA
85168602 AGTATTTGAA
Statistics
Matches: 89, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
24 5 0.06
25 48 0.54
26 36 0.40
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (25 bp):
AAATAATAAATAAAAGGTTTGAAAT
Found at i:85168678 original size:26 final size:26
Alignment explanation
Indices: 85168649--85168718 Score: 68
Period size: 30 Copynumber: 2.5 Consensus size: 26
85168639 AAGTAACATG
* *
85168649 TAAAAATTTAAAATAGATAACATATA
1 TAAAAATTTAAAATAAATAACATAAA
85168675 TAAAAAATAGTTAGAAATAAATAACATAAA
1 T-AAAAAT--TTA-AAATAAATAACATAAA
*
85168705 AAAAATATTTAAAA
1 TAAAA-ATTTAAAA
85168719 CAAAAAATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
26 1 0.03
27 9 0.25
28 3 0.08
29 7 0.19
30 16 0.44
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (26 bp):
TAAAAATTTAAAATAAATAACATAAA
Found at i:85168823 original size:15 final size:16
Alignment explanation
Indices: 85168803--85168832 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
85168793 CTACATAATG
85168803 TATATAA-ATGTAAAA
1 TATATAATATGTAAAA
85168818 TATATAATATGTAAA
1 TATATAATATGTAAA
85168833 TGTTTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (16 bp):
TATATAATATGTAAAA
Found at i:85168824 original size:24 final size:25
Alignment explanation
Indices: 85168788--85168875 Score: 83
Period size: 24 Copynumber: 3.6 Consensus size: 25
85168778 ATAAAATAAT
* *
85168788 TTAAACTACATAATGTATATAAATG
1 TTAAAATAAATAATGTATATAAATG
* *
85168813 -TAAAATATATAA--TATGTAAATG
1 TTAAAATAAATAATGTATATAAATG
**
85168835 TTTAAAATAAATAATGTATATGAAAAC
1 -TTAAAATAAATAATGTATAT-AAATG
85168862 TTAAAATAAATAAT
1 TTAAAATAAATAAT
85168876 ATGTAAAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
22 9 0.18
24 21 0.41
26 18 0.35
27 3 0.06
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (25 bp):
TTAAAATAAATAATGTATATAAATG
Found at i:85168880 original size:50 final size:50
Alignment explanation
Indices: 85168764--85168896 Score: 164
Period size: 50 Copynumber: 2.7 Consensus size: 50
85168754 TAAAAGGTTA
* * * *
85168764 AAAATAAATAACATATAAAATAATTTAAACTACATAATGTATATAAATGT
1 AAAATAAATAATATGTAAAATAATTTAAAATAAATAATGTATATAAATGT
* *
85168814 AAAATATATAATATGT-AAAT-GTTTAAAATAAATAATGTATATGAAAACT-T
1 AAAATAAATAATATGTAAAATAATTTAAAATAAATAATGTATAT--AAA-TGT
85168864 AAAATAAATAATATGTAAAATAATTTAAAATAA
1 AAAATAAATAATATGTAAAATAATTTAAAATAA
85168897 TACATAATAA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
48 19 0.27
49 4 0.06
50 32 0.46
51 5 0.07
52 10 0.14
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (50 bp):
AAAATAAATAATATGTAAAATAATTTAAAATAAATAATGTATATAAATGT
Found at i:85168907 original size:25 final size:26
Alignment explanation
Indices: 85168653--85168916 Score: 109
Period size: 26 Copynumber: 10.3 Consensus size: 26
85168643 AACATGTAAA
*
85168653 AATTTAAAATAGATAACATATATAAAA-
1 AATTTAAAATAAAT-A-ATATATAAAAC
* * *
85168680 AATAGTTAGAAATAAATAACATAAAAAAA
1 AAT--TTA-AAATAAATAATATATAAAAC
* * * *
85168709 ATATTTAAAACAAAAAATGTGTAAAAC
1 A-ATTTAAAATAAATAATATATAAAAC
* * *
85168736 AGTTTTAAATAACT-A-ATATAAAA-
1 AATTTAAAATAAATAATATATAAAAC
** * * *
85168759 GGTTAAAAATAAATAACATATAAAAT
1 AATTTAAAATAAATAATATATAAAAC
* * * *
85168785 AATTTAAACTACATAATGTAT-ATA-
1 AATTTAAAATAAATAATATATAAAAC
* * *
85168809 AATGTAAAATATATAATATGT-AAA-
1 AATTTAAAATAAATAATATATAAAAC
** * *
85168833 TGTTTAAAATAAATAATGTATATGAA-
1 AATTTAAAATAAATAATATATA-AAAC
* * *
85168859 AACTTAAAATAAATAATATGTAAAAT
1 AATTTAAAATAAATAATATATAAAAC
85168885 AATTTAAAAT-AATACATA-ATAAAAC
1 AATTTAAAATAAATA-ATATATAAAAC
85168910 AATTTAA
1 AATTTAA
85168917 TGTAAAAGGT
Statistics
Matches: 174, Mismatches: 51, Indels: 26
0.69 0.20 0.10
Matches are distributed among these distances:
23 10 0.06
24 40 0.23
25 29 0.17
26 53 0.30
27 17 0.10
28 11 0.06
29 5 0.03
30 9 0.05
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (26 bp):
AATTTAAAATAAATAATATATAAAAC
Found at i:85169474 original size:11 final size:11
Alignment explanation
Indices: 85169460--85169511 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
85169450 TCTTTCAATA
85169460 TTCTCTCAAAT
1 TTCTCTCAAAT
85169471 TTCTCTCAAA-
1 TTCTCTCAAAT
85169481 -TCTCTCAAAT
1 TTCTCTCAAAT
*
85169491 TTCTCTTAAAT
1 TTCTCTCAAAT
*
85169502 TCCTCTCAAA
1 TTCTCTCAAA
85169512 ACTCTAGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:85169486 original size:20 final size:21
Alignment explanation
Indices: 85169454--85169511 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
85169444 TTTCAATCTT
85169454 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
85169476 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
85169496 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
85169512 ACTCTAGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:85169567 original size:16 final size:15
Alignment explanation
Indices: 85169538--85169568 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85169528 TCAAAAAAGC
*
85169538 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
85169553 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
85169568 T
1 T
85169569 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:85170682 original size:7 final size:7
Alignment explanation
Indices: 85170670--85170696 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
85170660 TATTGGATTC
85170670 GTATTTA
1 GTATTTA
85170677 GTATTTA
1 GTATTTA
85170684 GTATTTA
1 GTATTTA
85170691 GTATTT
1 GTATTT
85170697 TTTATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:85172043 original size:116 final size:116
Alignment explanation
Indices: 85171722--85172103 Score: 644
Period size: 116 Copynumber: 3.3 Consensus size: 116
85171712 TATTTGTACA
* * *
85171722 AACATTTTGAATCTTTTTATATTATTTCATGTTATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
85171787 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAGGC
* *
85171838 AACATTTTG---ATTTTTATATTATTTCATGTAATTAGATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
85171900 TGTAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAGGC
* *
85171951 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
85172016 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAGGC
*
85172067 AATATTTTGAATATTTTTATATTATTTCATGTAATAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAA
85172104 AATATAAATA
Statistics
Matches: 251, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
113 109 0.43
116 142 0.57
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.48
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAGGC
Found at i:85175351 original size:126 final size:126
Alignment explanation
Indices: 85175119--85175656 Score: 803
Period size: 126 Copynumber: 4.3 Consensus size: 126
85175109 GCCTAAGTTA
* * * *
85175119 TTTCAGAAACCACTGTAGCAACAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
**
85175184 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATACAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * * *
85175245 TTTCAGAGACCACTATAGCAAAAAAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
*
85175310 TGCATCCTGCTTGAAGCGTTTTT-ACCACTATTTGCATAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * *
85175371 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAACTTCTTTCAGTACTTTTACTGACAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
*
85175436 TGCATCCTGCTTAAAGCGTTTTTTG-CACTATTTGCACAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCG-TTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * * *
85175497 TTTCAGATACTACTGTAGCAAAAAAACGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * * *
85175562 TGCTTCCTGTTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
85175623 TTT-AGAGACTACTATAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGT
85175657 AGAAGCTCTT
Statistics
Matches: 371, Mismatches: 37, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
125 34 0.09
126 332 0.89
127 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (126 bp):
TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:85175767 original size:15 final size:15
Alignment explanation
Indices: 85175747--85175776 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85175737 TTTCTTAAAT
85175747 ACCCTAAAACCCTAA
1 ACCCTAAAACCCTAA
*
85175762 ACCCTAAAATCCTAA
1 ACCCTAAAACCCTAA
85175777 TCTATTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCCTAAAACCCTAA
Found at i:85175949 original size:96 final size:96
Alignment explanation
Indices: 85175751--85175955 Score: 254
Period size: 96 Copynumber: 2.1 Consensus size: 96
85175741 TTAAATACCC
* * * * ***
85175751 TAAAACCCTAAACCCTAAAATCCTAATCTATTTTTTTAAAATTTATAATTAATTTACTCAAGTTA
1 TAAAACCCTAAACACTAAAATCCTAATCTAATTTTTTAAAATTTATAATTAATTGAATCAACAAA
* *
85175816 CCCTAAACCCTAATTTATTTGATTTTTTCCT
66 CACTAAACCCTAATTTATTTAATTTTTTCCT
* *
85175847 TAAAAACCATAAACACT-AAA-CCATAATCTAATTTTTTAAAA-TTAGTAATTAATTGAATTAAC
1 T-AAAACCCTAAACACTAAAATCC-TAATCTAATTTTTTAAAATTTA-TAATTAATTGAATCAAC
85175909 AAACACTAAACCCTAATTTATTTAATTTTTTTCCT
63 AAACACTAAACCCTAATTTATTTAA-TTTTTTCCT
85175944 TAAAACCCTAAA
1 TAAAACCCTAAA
85175956 ATTTAAAAAC
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
95 5 0.05
96 65 0.70
97 23 0.25
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (96 bp):
TAAAACCCTAAACACTAAAATCCTAATCTAATTTTTTAAAATTTATAATTAATTGAATCAACAAA
CACTAAACCCTAATTTATTTAATTTTTTCCT
Found at i:85179188 original size:20 final size:20
Alignment explanation
Indices: 85179163--85179202 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
85179153 ATTGAATTAG
*
85179163 GTAGATGTTGAATGCTGCCC
1 GTAGATGTTGAATACTGCCC
85179183 GTAGATGTTGAATACTGCCC
1 GTAGATGTTGAATACTGCCC
85179203 ATTGGAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (20 bp):
GTAGATGTTGAATACTGCCC
Found at i:85180506 original size:18 final size:18
Alignment explanation
Indices: 85180485--85180569 Score: 89
Period size: 18 Copynumber: 4.7 Consensus size: 18
85180475 TAACATTCAA
*
85180485 TTATTCAGTAGCAATTAG
1 TTATTCAGTAACAATTAG
* *
85180503 TTATTCAGTAACAATCAT
1 TTATTCAGTAACAATTAG
** *
85180521 TTGCTCAGTAGCAATTAG
1 TTATTCAGTAACAATTAG
* *
85180539 TTATTCAGTAACAATCAA
1 TTATTCAGTAACAATTAG
*
85180557 TTAGTCAGTAACA
1 TTATTCAGTAACA
85180570 GTCAGTCGTT
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATTAG
Found at i:85180565 original size:36 final size:36
Alignment explanation
Indices: 85180473--85180566 Score: 145
Period size: 36 Copynumber: 2.6 Consensus size: 36
85180463 AGTTTCATTT
* *
85180473 AGTAACATTCAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACAATCAATTAGTCAGTAGCAATTAGTTATTC
*
85180509 AGTAACAATC-ATTTGCTCAGTAGCAATTAGTTATTC
1 AGTAACAATCAATTAG-TCAGTAGCAATTAGTTATTC
85180545 AGTAACAATCAATTAGTCAGTA
1 AGTAACAATCAATTAGTCAGTA
85180567 ACAGTCAGTC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
35 3 0.06
36 45 0.87
37 4 0.08
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (36 bp):
AGTAACAATCAATTAGTCAGTAGCAATTAGTTATTC
Found at i:85180811 original size:44 final size:44
Alignment explanation
Indices: 85180755--85180846 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
85180745 CTGAAGTAAC
* * * *
85180755 AGTAACAGTACGACACACA-AGGTGCCTTATTGACTTAAAGTCGA
1 AGTAACAATACGACACACATA-GTGCCTCATCGACTCAAAGTCGA
**
85180799 AGTAACAATACGACACTTATAGTGCCTCATCGACTCAAAGTCGA
1 AGTAACAATACGACACACATAGTGCCTCATCGACTCAAAGTCGA
85180843 AGTA
1 AGTA
85180847 TCCCTAAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (44 bp):
AGTAACAATACGACACACATAGTGCCTCATCGACTCAAAGTCGA
Found at i:85181986 original size:5 final size:5
Alignment explanation
Indices: 85181971--85182003 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
85181961 AATCTCCAAT
85181971 TTTTCC TTTTC TTTTC TTTTC TTTTC -TTTC TTT
1 TTTT-C TTTTC TTTTC TTTTC TTTTC TTTTC TTT
85182004 CCTTCCTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:85181996 original size:15 final size:15
Alignment explanation
Indices: 85181971--85182007 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
85181961 AATCTCCAAT
85181971 TTTTCCTTTTCTTTTC
1 TTTTCCTTTTC-TTTC
85181987 TTTT-CTTTTCTTTC
1 TTTTCCTTTTCTTTC
85182001 -TTTCCTT
1 TTTTCCTT
85182008 CCTTCCTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.15
14 7 0.35
15 6 0.30
16 4 0.20
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTCCTTTTCTTTC
Found at i:85182396 original size:11 final size:11
Alignment explanation
Indices: 85182380--85182405 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85182370 AATACAAAAG
85182380 AATAATAAATT
1 AATAATAAATT
85182391 AATAATAAATT
1 AATAATAAATT
85182402 AATA
1 AATA
85182406 TTTACTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAAATT
Found at i:85187883 original size:19 final size:19
Alignment explanation
Indices: 85187861--85187970 Score: 59
Period size: 19 Copynumber: 5.8 Consensus size: 19
85187851 AAAAATTACA
*
85187861 AAAATTTAAAATAATTTTT
1 AAAATTTAAAATAATTTAT
**
85187880 AAAATCCAAAAT-ATTTAT
1 AAAATTTAAAATAATTTAT
* *
85187898 AAAAATTATAAA-AATTTCAAA
1 AAAATTTA-AAATAATTT--AT
* * *
85187919 AAAAATTAAAA-AATATAA
1 AAAATTTAAAATAATTTAT
85187937 AGAAAGTTTAAAA-AATTTA-
1 A-AAA-TTTAAAATAATTTAT
*
85187956 AAAATTTAGAATAAT
1 AAAATTTAAAATAAT
85187971 AATTTTAGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.08
18 19 0.26
19 21 0.29
20 18 0.25
21 9 0.12
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAATTTAAAATAATTTAT
Found at i:85188172 original size:16 final size:16
Alignment explanation
Indices: 85188148--85188186 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
85188138 AACTCGATCA
*
85188148 ATTTCACTCAAATTTG
1 ATTTCACTCAAATTTC
* *
85188164 ATTTGACTCGAATTTC
1 ATTTCACTCAAATTTC
85188180 ATTTCAC
1 ATTTCAC
85188187 CCATCTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.44
Consensus pattern (16 bp):
ATTTCACTCAAATTTC
Found at i:85189564 original size:27 final size:27
Alignment explanation
Indices: 85189526--85189578 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
85189516 TAAAATATGG
*
85189526 GTGGAGGGTACCCCACAGGCGGCACCA
1 GTGGAGGGTACCCCACAGGCGACACCA
85189553 GTGGAGGGTACCCCACAGGCGACACC
1 GTGGAGGGTACCCCACAGGCGACACC
85189579 GCTGACTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.34, G:0.36, T:0.08
Consensus pattern (27 bp):
GTGGAGGGTACCCCACAGGCGACACCA
Found at i:85190447 original size:144 final size:144
Alignment explanation
Indices: 85190223--85191237 Score: 1371
Period size: 144 Copynumber: 7.1 Consensus size: 144
85190213 AAGAAATTCG
* * * *
85190223 AAAAT-AAAAAAAGGTCAAAATCAGAGTTTTTTACTAAATTAATATAAATATACTAAAATAATAC
1 AAAATAAAAAAAAGGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAATAC
* * *
85190287 ATATAAAACATTATGTACTAAAAT-A-ATAAAAAATAAAATACGAAAATAGTATATTTTGAAAAA
66 ATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAA
85190350 TAAAATCCGAAAAT
131 TAAAATCCGAAAAT
85190364 AAAATAAAAACAAACGGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAAT
1 AAAATAAAAA-AAA-GGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAAT
85190429 ACATTTGAAACATTATGTACTAAAATAATATAAAAAAAATAAAATACGAAAATAGTATATTTTAA
64 ACATTTGAAACATTATGTACTAAAATAATAT--AAAAAATAAAATACGAAAATAGTATATTTTAA
*
85190494 AATAA-AAAAT-CGGAAA-
127 AA-AATAAAATCCGAAAAT
* *
85190510 AAAATAAAAAAAAGGCCAAAACCA-CATATTTTTACTAAATTAATATAAAAAAACTAAAATAATA
1 AAAATAAAAAAAAGGCCAAAATCAGAAT-TTTTTACTAAATTAATATAAAAAAACTAAAATAATA
* * *
85190574 CA--TGAAACATTATGTACTAAAATAATATAAAAAACAAAATACGAAAATAATATATCTTAAAAA
65 CATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAA
85190637 ATAAAA-CCTGAAAAT
130 ATAAAATCC-GAAAAT
* * *
85190652 AAAA-ATAAAAAAGGCCAAAATCAGAGTTTTTTTCTAAATTAATATAAAAAAACTAAAATAATAC
1 AAAATAAAAAAAAGGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAATAC
*
85190716 ATTTGAAACATTATATACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAA
66 ATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAA
85190781 TAAAATCCGAAAAT
131 TAAAATCCGAAAAT
* * * * * * * *
85190795 AAAA-AATAAAAGGGCCAAAATCAGAGTTTTTTTCTATATTTATAT-AAAAAACTAAAATAAAAT
1 AAAATAAAAAAAAGGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAATAC
* *
85190858 ATTTTAAATATTATGTACTAAAATAATATAAAAACATAAAATACGAAAATAGTATATTTTAAAAA
66 ATTTGAAACATTATGTACTAAAATAATATAAAAA-ATAAAATACGAAAATAGTATATTTT-AAAA
*
85190923 AATAAAATCCAAAAAT
129 AATAAAATCCGAAAAT
* * *
85190939 AAAATAAAAATAAACGGCCAAAATCAG-AGTTTTTATTAAATTAATAT-AAAAAACTAAAATAAC
1 AAAATAAAAA-AAA-GGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAAT
* * * *
85191002 AAATTTGGAACATTATGTACTAAAATAATATAAAAAATAAAATATGAAAATAGTTTATTTTAAAA
64 ACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAA
*
85191067 AGTAAAATCC-AAGAAT
129 AATAAAATCCGAA-AAT
* * * * **
85191083 AAAATAAAAAACAAACGGTCAAAATCGGATTTTTTTATTAAATTAATATAAAAAATAAAAAAATA
1 AAAAT-AAAAA-AAA-GGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAA-ACTAAAATA
*
85191148 ATACATTTGAAACATTATGTACTAAAATAATAT-AAAAATAAAATACGAAAATAATATATTTTAA
62 ATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAA
*
85191212 AAAATAAAATCTGAAAAT
127 AAAATAAAATCCGAAAAT
85191230 AAAATAAA
1 AAAATAAA
85191238 TACTAAAATA
Statistics
Matches: 781, Mismatches: 65, Indels: 51
0.87 0.07 0.06
Matches are distributed among these distances:
139 2 0.00
140 36 0.05
141 63 0.08
142 82 0.10
143 141 0.18
144 164 0.21
145 50 0.06
146 96 0.12
147 68 0.09
148 77 0.10
149 2 0.00
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.28
Consensus pattern (144 bp):
AAAATAAAAAAAAGGCCAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAATAC
ATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAA
TAAAATCCGAAAAT
Found at i:85193407 original size:32 final size:32
Alignment explanation
Indices: 85193365--85193425 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
85193355 CCTCGGCCCA
*
85193365 TATCCACTGCAGTACT-CCACTCCTCCTGGATG
1 TATCCACTGCAGCA-TGCCACTCCTCCTGGATG
* *
85193397 TATCCTCTGCAGCATGGCACTCCTCCTGG
1 TATCCACTGCAGCATGCCACTCCTCCTGG
85193426 CTCAAGTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.04
32 24 0.96
ACGTcount: A:0.16, C:0.38, G:0.18, T:0.28
Consensus pattern (32 bp):
TATCCACTGCAGCATGCCACTCCTCCTGGATG
Found at i:85197561 original size:25 final size:22
Alignment explanation
Indices: 85197518--85197562 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 22
85197508 ATAAATTTTA
*
85197518 AAACAAACATAAAAGTAACACT
1 AAACAAACATAAAACTAACACT
85197540 AAACAAACTATATAATACTAACA
1 AAACAAAC-ATA-AA-ACTAACA
85197563 AAATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 2 0.11
25 6 0.32
ACGTcount: A:0.62, C:0.18, G:0.02, T:0.18
Consensus pattern (22 bp):
AAACAAACATAAAACTAACACT
Found at i:85197651 original size:22 final size:22
Alignment explanation
Indices: 85197624--85197665 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
85197614 AAAATTACTT
85197624 TTTCTTTTCTTTCT-TCTTCTCC
1 TTTC-TTTCTTTCTATCTTCTCC
85197646 TTTCTTTCTTTCTATCTTCT
1 TTTCTTTCTTTCTATCTTCT
85197666 TCTTCTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTCTTTCTATCTTCTCC
Found at i:85201911 original size:30 final size:30
Alignment explanation
Indices: 85201877--85201939 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
85201867 ACTTATTTTA
*
85201877 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
*
85201907 TTGTTAATTTTATTATTATTTTAGAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
85201937 TTG
1 TTG
85201940 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:85203036 original size:17 final size:17
Alignment explanation
Indices: 85203016--85203053 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
85203006 AACTCTTTAT
*
85203016 TTTGGCATATTTTGTAG
1 TTTGGCATATTCTGTAG
85203033 TTTGGCATATTCTGTAG
1 TTTGGCATATTCTGTAG
85203050 TTTG
1 TTTG
85203054 CGAACTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.53
Consensus pattern (17 bp):
TTTGGCATATTCTGTAG
Found at i:85210428 original size:10 final size:10
Alignment explanation
Indices: 85210409--85210458 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
85210399 TTAAATTCTA
85210409 AAAGATAAAT
1 AAAGATAAAT
85210419 ACAA-ATAAAT
1 A-AAGATAAAT
*
85210429 AAAGATAATT
1 AAAGATAAAT
85210439 AAAGATAAAT
1 AAAGATAAAT
*
85210449 AAAAATAAAT
1 AAAGATAAAT
85210459 CCTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:85210508 original size:14 final size:13
Alignment explanation
Indices: 85210472--85210509 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
85210462 AAATTTAAAT
85210472 CTAAATAATTATC
1 CTAAATAATTATC
*
85210485 CTTAATAATTATC
1 CTAAATAATTATC
85210498 CTAATATAATTA
1 CTAA-ATAATTA
85210510 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:85220738 original size:27 final size:27
Alignment explanation
Indices: 85220700--85220753 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
85220690 TTGTGGCATT
*
85220700 TGGGTTATTGGAAGTGCCCAATCGCGA
1 TGGGTTATTGGAAGTGCCCAACCGCGA
*
85220727 TGGGTTATTGGAAGTGCTCAACCGCGA
1 TGGGTTATTGGAAGTGCCCAACCGCGA
85220754 CAGAGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (27 bp):
TGGGTTATTGGAAGTGCCCAACCGCGA
Found at i:85222202 original size:10 final size:10
Alignment explanation
Indices: 85222183--85222232 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
85222173 TTAAATTCTA
85222183 AAAGATAAAT
1 AAAGATAAAT
85222193 ACAA-ATAAAT
1 A-AAGATAAAT
*
85222203 AAAGATAATT
1 AAAGATAAAT
85222213 AAAGATAAAT
1 AAAGATAAAT
*
85222223 AAAAATAAAT
1 AAAGATAAAT
85222233 CCTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:85222434 original size:18 final size:17
Alignment explanation
Indices: 85222407--85222440 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
85222397 AATTCACGCT
85222407 TTTTGACTTTAAATTTAC
1 TTTTGACTTT-AATTTAC
*
85222425 TTTTGCCTTTAATTTA
1 TTTTGACTTTAATTTA
85222441 GTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTTGACTTTAATTTAC
Found at i:85223015 original size:91 final size:91
Alignment explanation
Indices: 85222837--85223029 Score: 232
Period size: 91 Copynumber: 2.1 Consensus size: 91
85222827 TGTTAACTTC
* * *
85222837 AGGTAACATAATAATACACAAATTGATAATTCATGTATCATATTGGACATTTCAAAGTACAAGTA
1 AGGTACCA-AATAATACACAAATTAATAATTCATGTATCATATTGGACATTTCAAAGTACAAATA
*
85222902 GCACATTAGACATCTTACAAAAGTA-G
65 CCACATTAGACATCTTACAAAAGTACG
* * *
85222928 AGGTACCAAATAATACACAAATTAATAGTTTA-GATATTATATTGGACATTTTCAAAGTACAAAT
1 AGGTACCAAATAATACACAAATTAATAATTCATG-TATCATATTGGACA-TTTCAAAGTACAAAT
* * *
85222992 ACCTCATTGGACAT-TCTATAAAAGTACG
64 ACCACATTAGACATCT-TACAAAAGTACG
85223020 A-GTACCAAAT
1 AGGTACCAAAT
85223030 GTAACATTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
89 1 0.01
90 35 0.40
91 50 0.57
92 2 0.02
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.30
Consensus pattern (91 bp):
AGGTACCAAATAATACACAAATTAATAATTCATGTATCATATTGGACATTTCAAAGTACAAATAC
CACATTAGACATCTTACAAAAGTACG
Found at i:85230258 original size:15 final size:16
Alignment explanation
Indices: 85230240--85230272 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
85230230 AATATATTTT
85230240 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
85230255 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
85230272 T
1 T
85230273 ATAATCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:85230386 original size:26 final size:24
Alignment explanation
Indices: 85230347--85230396 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
85230337 ATTTATTTTA
*
85230347 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
85230371 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
85230397 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:85230668 original size:28 final size:28
Alignment explanation
Indices: 85230637--85230701 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
85230627 AATTTTAAAA
85230637 AAAAATTAAAA-AACTATTTTTAAAATTT
1 AAAAATTAAAATAA-TATTTTTAAAATTT
* * *
85230665 -AAAATATAAAATTATATTTTTATACTTT
1 AAAAAT-TAAAATAATATTTTTAAAATTT
85230693 AAAAATTAA
1 AAAAATTAA
85230702 TTAAATTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 5 0.16
28 20 0.65
29 6 0.19
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (28 bp):
AAAAATTAAAATAATATTTTTAAAATTT
Found at i:85231529 original size:28 final size:27
Alignment explanation
Indices: 85231494--85231553 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
85231484 CATATTAATA
85231494 GGGTTAGGAAAAGTCTCATAACTTATG
1 GGGTTAGGAAAAGTCTCATAACTTATG
* * *
85231521 GGGTATAGGAAGAGTTTTATAACTTATG
1 GGGT-TAGGAAAAGTCTCATAACTTATG
85231549 GGGTT
1 GGGTT
85231554 GATAATGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (27 bp):
GGGTTAGGAAAAGTCTCATAACTTATG
Found at i:85236947 original size:28 final size:28
Alignment explanation
Indices: 85236915--85236974 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
85236905 CATATTAATA
85236915 GGGTATAGGAAAAATCTCATAACTTATG
1 GGGTATAGGAAAAATCTCATAACTTATG
* * * *
85236943 GGGTATAGGAAGAGTTTTATAACTTATG
1 GGGTATAGGAAAAATCTCATAACTTATG
85236971 GGGT
1 GGGT
85236975 TGATAATGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (28 bp):
GGGTATAGGAAAAATCTCATAACTTATG
Found at i:85237721 original size:128 final size:128
Alignment explanation
Indices: 85237493--85237749 Score: 460
Period size: 128 Copynumber: 2.0 Consensus size: 128
85237483 ACCATTTATC
*
85237493 AGAACAGAATCTGACACCGTTAAGAAGAATTGAAATGATGATCCATGGTTTGAAGTCCGAATAAT
1 AGAACAGAATCTGACACCGTTAAGAAGAATTGAAATGATGATCCATGGTTTGAAGTCCGAAGAAT
* *
85237558 ACCCTATTGTATTCATACAGACATCATTTAGGAAGAACATGATCTGGTCCTTCAAGATTGAAA
66 ACCCTATTGTATTCATACAGACATCATTTAAGAAGAACATGATCTGGTCCGTCAAGATTGAAA
* *
85237621 AGAACAGAATCTGACACCGTTGAGAAGAATTGAAATGATGATCCATGGTTTGAAGTCTGAAGAAT
1 AGAACAGAATCTGACACCGTTAAGAAGAATTGAAATGATGATCCATGGTTTGAAGTCCGAAGAAT
*
85237686 ACTCTATTGTATTCATACAGACATCATTTAAGAAGAACATGATCTGGTCCGTCAAGATTGAAA
66 ACCCTATTGTATTCATACAGACATCATTTAAGAAGAACATGATCTGGTCCGTCAAGATTGAAA
85237749 A
1 A
85237750 ACAAACTTTG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
128 123 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (128 bp):
AGAACAGAATCTGACACCGTTAAGAAGAATTGAAATGATGATCCATGGTTTGAAGTCCGAAGAAT
ACCCTATTGTATTCATACAGACATCATTTAAGAAGAACATGATCTGGTCCGTCAAGATTGAAA
Found at i:85239649 original size:22 final size:22
Alignment explanation
Indices: 85239624--85239671 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
85239614 TTTTCATATT
* * *
85239624 TTTTGGGATTTTTTTTTTATGA
1 TTTTGAGATTTTCTTTTAATGA
*
85239646 TTTTTAGATTTTCTTTTAATGA
1 TTTTGAGATTTTCTTTTAATGA
85239668 TTTT
1 TTTT
85239672 TATTTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.17, C:0.02, G:0.12, T:0.69
Consensus pattern (22 bp):
TTTTGAGATTTTCTTTTAATGA
Found at i:85239672 original size:22 final size:22
Alignment explanation
Indices: 85239630--85239673 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
85239620 TATTTTTTGG
* *
85239630 GATTTTTTTTTTATGATTTTTA
1 GATTTTCTTTTAATGATTTTTA
85239652 GATTTTCTTTTAATGATTTTTA
1 GATTTTCTTTTAATGATTTTTA
85239674 TTTTTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.02, G:0.09, T:0.68
Consensus pattern (22 bp):
GATTTTCTTTTAATGATTTTTA
Found at i:85239679 original size:22 final size:20
Alignment explanation
Indices: 85239631--85239680 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
85239621 ATTTTTTGGG
85239631 ATTTTTTTTTTATGATTTTT
1 ATTTTTTTTTTATGATTTTT
* *
85239651 AGATTTTCTTTTAATGATTTTT
1 --ATTTTTTTTTTATGATTTTT
85239673 ATTTTTTT
1 ATTTTTTT
85239681 ATACGTGGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.28
22 18 0.72
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.74
Consensus pattern (20 bp):
ATTTTTTTTTTATGATTTTT
Found at i:85242096 original size:27 final size:27
Alignment explanation
Indices: 85242066--85242134 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 27
85242056 AATCATATAT
*
85242066 ATATATTACTAATGAATAAAATT-TTAA
1 ATATATTACTAATGAAAAAAATTATT-A
*
85242093 ATATAATTGACCTTA-GAAAAAAATTATTA
1 ATAT-ATT-A-CTAATGAAAAAAATTATTA
85242122 ATATATTACTAAT
1 ATATATTACTAAT
85242135 TATTATTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
26 3 0.09
27 5 0.15
28 6 0.18
29 15 0.44
30 5 0.15
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (27 bp):
ATATATTACTAATGAAAAAAATTATTA
Found at i:85248099 original size:48 final size:50
Alignment explanation
Indices: 85248005--85248118 Score: 162
Period size: 49 Copynumber: 2.3 Consensus size: 50
85247995 CTATCTAATC
*
85248005 AAATTAATTAATTATAATAATAAAAAAGTCAAAAATGATAACTTAAAGAAA
1 AAATTAATTAATCATAATAATAAAAAAGTCAAAAATGATAACTTAAA-AAA
*
85248056 AAATTAATTAATCATAAT-A-AAAAAAGTCAAAAATTATAA-TTAAAAAA
1 AAATTAATTAATCATAATAATAAAAAAGTCAAAAATGATAACTTAAAAAA
*
85248103 AAAGTAAGTTAATCAT
1 AAATTAA-TTAATCAT
85248119 TTTCTCTAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
47 9 0.15
48 13 0.22
49 19 0.32
50 1 0.02
51 17 0.29
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.28
Consensus pattern (50 bp):
AAATTAATTAATCATAATAATAAAAAAGTCAAAAATGATAACTTAAAAAA
Found at i:85248618 original size:30 final size:31
Alignment explanation
Indices: 85248582--85248645 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
85248572 TTCATGTTTA
*
85248582 TAAAATTTG-TATATGAA-TTTAAATTTAATG
1 TAAAATTTGATACATGAACTTT-AATTTAATG
*
85248612 TAAAATTTGATACATGAACTTTAATTTAGTG
1 TAAAATTTGATACATGAACTTTAATTTAATG
85248643 TAA
1 TAA
85248646 TTATACACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 9 0.30
31 18 0.60
32 3 0.10
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (31 bp):
TAAAATTTGATACATGAACTTTAATTTAATG
Found at i:85250441 original size:22 final size:22
Alignment explanation
Indices: 85250415--85250457 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
85250405 TACCTAAATT
85250415 TTAAAATTTAAAAAATAAAAAA
1 TTAAAATTTAAAAAATAAAAAA
* *
85250437 TTAAATTTTTAAAAATAAAAA
1 TTAAAATTTAAAAAATAAAAA
85250458 TATATGAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TTAAAATTTAAAAAATAAAAAA
Found at i:85261963 original size:17 final size:19
Alignment explanation
Indices: 85261941--85261978 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
85261931 TCTATTCCGC
85261941 ATCAT-ATTT-TATAAAAT
1 ATCATAATTTGTATAAAAT
85261958 ATCATAATTTGTATAAAAT
1 ATCATAATTTGTATAAAAT
85261977 AT
1 AT
85261979 GTTTCATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (19 bp):
ATCATAATTTGTATAAAAT
Found at i:85269928 original size:21 final size:21
Alignment explanation
Indices: 85269890--85269930 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
85269880 AGACGAGCGA
* *
85269890 TACTCCACAGCAGATGGAGTG
1 TACTCCAAAACAGATGGAGTG
*
85269911 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGATGGAGT
85269931 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGATGGAGTG
Done.