Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 264 of 320
Found at i:85740676 original size:88 final size:86
Alignment explanation
Indices: 85740426--85740706 Score: 325
Period size: 87 Copynumber: 3.2 Consensus size: 86
85740416 TTTTCCAATA
* * * * *
85740426 AAAATTTATTAAATTAATAATACTAAAAAATTATTAGACTTAATTTTAAAAATATTAAAAAATCG
1 AAAA-TTATTAAAATAATAATATTAAAAAATTATTAAACTTAATTTCAAAATTATTAAAAAAT--
85740491 AAGCATAAAAAATAATAAATTATC
63 AAGCATAAAAAATAATAAATTATC
85740515 AAAATTATTAAAATAATAATATT-AAAAATTATTAAACTTAATTTCAAAATTATTAAAAAATTTA
1 AAAATTATTAAAATAATAATATTAAAAAATTATTAAACTTAATTTCAAAATTATTAAAAAA--TA
85740579 AGCATAAAAAATAATAAATTAAT-
64 AGCATAAAAAATAATAAATT-ATC
* * * *
85740602 AACATTATTAAAATAATAATATTAAAAAATTATTAAACATAATTTCAGAATTATTCAAATAATAA
1 AAAATTATTAAAATAATAATATTAAAAAATTATTAAACTTAATTTCAAAATTATT-AAAAAATAA
* *
85740667 -TATTAAAAAATTATGAAACTTAATTTC
65 GCA-TAAAAAATAAT-AAA-TT-A--TC
85740694 AAAATTATTAAAA
1 AAAATTATTAAAA
85740707 ATTTTAAGTA
Statistics
Matches: 169, Mismatches: 12, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
86 1 0.01
87 90 0.53
88 51 0.30
89 14 0.08
91 1 0.01
92 12 0.07
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (86 bp):
AAAATTATTAAAATAATAATATTAAAAAATTATTAAACTTAATTTCAAAATTATTAAAAAATAAG
CATAAAAAATAATAAATTATC
Found at i:85740696 original size:134 final size:134
Alignment explanation
Indices: 85740508--85740778 Score: 463
Period size: 134 Copynumber: 2.0 Consensus size: 134
85740498 AAAAATAATA
*
85740508 AATTATCAAAATTATTAAAATAATAATATTAAAAATTATTAAACTTAATTTCAAAATTATTAAAA
1 AATTATCAAAATTATTAAAATAATAATATTAAAAATTATGAAACTTAATTTCAAAATTATTAAAA
85740573 AATTTAAGCATAAAAAATAATAAATTAATAACATTATTAAAATAATAATATTAAAAAATTATTAA
66 AATTTAAGCATAAAAAATAATAAATTAATAACATTATTAAAATAATAATATTAAAAAATTATTAA
85740638 ACAT
131 ACAT
* *
85740642 AATT-TCAGAATTATTCAAATAATAATATTAAAAAATTATGAAACTTAATTTCAAAATTATTAAA
1 AATTATCAAAATTATTAAAATAATAATATT-AAAAATTATGAAACTTAATTTCAAAATTATTAAA
* * *
85740706 AATTTTAAGTATAAAAAATAATAAATTAATAACATTATTAAAATAATAATATTAAATAATTATTA
65 AAATTTAAGCATAAAAAATAATAAATTAATAACATTATTAAAATAATAATATTAAAAAATTATTA
*
85740771 AACTT
130 AACAT
85740776 AAT
1 AAT
85740779 AAAAAAAATT
Statistics
Matches: 129, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
133 23 0.18
134 106 0.82
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.37
Consensus pattern (134 bp):
AATTATCAAAATTATTAAAATAATAATATTAAAAATTATGAAACTTAATTTCAAAATTATTAAAA
AATTTAAGCATAAAAAATAATAAATTAATAACATTATTAAAATAATAATATTAAAAAATTATTAA
ACAT
Found at i:85740748 original size:25 final size:24
Alignment explanation
Indices: 85740720--85740781 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
85740710 TTAAGTATAA
85740720 AAAATAATAAATT-AATAACATTATT
1 AAAATAATAAATTAAAT-A-ATTATT
85740745 AAAATAATAATATTAAATAATTATT
1 AAAATAATAA-ATTAAATAATTATT
*
85740770 AAACTTAATAAA
1 AAA-ATAATAAA
85740782 AAAAATTTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 20 0.61
26 10 0.30
27 3 0.09
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATAATAAATTAAATAATTATT
Found at i:85743136 original size:3 final size:3
Alignment explanation
Indices: 85743115--85743150 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
85743105 ATGTTAACAT
* *
85743115 ATA ATA CTA ATA CTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
85743151 GAAAGCCATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:85743508 original size:21 final size:21
Alignment explanation
Indices: 85743476--85743518 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
85743466 TAAAATTGCA
*
85743476 AAAATAATAAATTTAGGGACT
1 AAAATAATAAATATAGGGACT
*
85743497 AAAAT-ATGAAATATATGGACT
1 AAAATAAT-AAATATAGGGACT
85743518 A
1 A
85743519 GTACGAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (21 bp):
AAAATAATAAATATAGGGACT
Found at i:85744337 original size:35 final size:35
Alignment explanation
Indices: 85744298--85744373 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
85744288 ACAAGTAAGC
*
85744298 TTATATCAAACTTGAGTATTCGGTTACATGTGAAT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
** * * * *
85744333 TTATATTGAACATGTGTATTTGGTTGCATGTGAGT
1 TTATATCAAACATGAGTATTCGGTTACATGTGAAT
85744368 TTATAT
1 TTATAT
85744374 TGAGCTTATA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (35 bp):
TTATATCAAACATGAGTATTCGGTTACATGTGAAT
Found at i:85744556 original size:40 final size:40
Alignment explanation
Indices: 85744443--85744904 Score: 547
Period size: 41 Copynumber: 11.4 Consensus size: 40
85744433 GTTTAATTAA
* * * * *
85744443 AAACGCCGCAAAAAACTGAACAAAAGCAGCGTTTTTGGCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
*
85744483 AAAACGCCACTAAAAACTAATCAATAGCGGCGTTTTTGGCC
1 -AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
* *
85744524 AAAACGCCACT-AAAACTTATCAATAGTC-GCGTTTTTAGCCC
1 -AAACGCCACTAAAAACTGATCAATAG-CGGCGTTTTT-GGCC
85744565 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
* * *
85744605 AAGCGCCACTAAAAACTGATCAATTGCGGCGTTTTTAGCCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTT-GGCC
* * * * *
85744646 AAACGCCACTAAAAACTTATGAATAGCAGCATTTTTGTCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
85744686 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTTGGCCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCG-TTTTTGG-CC
* * *
85744728 AAACGCCACTAAAAACTGATCAATAGCTGCATTTTTTGCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
* * *
85744768 TAAACGCCACTAAAAACTGATCAATAGCAGCGTTTTT-ACATA
1 -AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGC--C
* * * *
85744810 AAATGCCACTAAAAACTGAGCAACAGCAGCGTTTTTGGTCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGG-CC
85744851 AAACGCCACT-AAAACTGATCAATAGCGGCGTTTTTGGTCC
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGG-CC
85744891 AAACGCCAC-AAAAA
1 AAACGCCACTAAAAA
85744905 GTTGAGCAGC
Statistics
Matches: 367, Mismatches: 41, Indels: 27
0.84 0.09 0.06
Matches are distributed among these distances:
40 143 0.39
41 192 0.52
42 31 0.08
43 1 0.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (40 bp):
AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTGGCC
Found at i:85744578 original size:81 final size:81
Alignment explanation
Indices: 85744443--85744904 Score: 574
Period size: 81 Copynumber: 5.7 Consensus size: 81
85744433 GTTTAATTAA
* * * * * * * *
85744443 AAACGCCGCAAAAAACTGAACAAAAGCAGCGTTTTTGGCCAAAACGCCACTAAAAACTAATCAAT
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAACTGATCAAT
*
85744508 AGCGGCGTTTTTGGCC
66 AGCAGCGTTTTTGGCC
*
85744524 AAAACGCCACT-AAAACTTATCAATAGTC-GCGTTTTTAGCCCAAACGCCACTAAAAACTGATCA
1 -AAACGCCACTAAAAACTGATCAATAG-CGGCGTTTTTAGCCCAAACGCCACTAAAAACTGATCA
*
85744587 ATAGCGGCGTTTTTGGCC
64 ATAGCAGCGTTTTTGGCC
* * * *
85744605 AAGCGCCACTAAAAACTGATCAATTGCGGCGTTTTTAGCCCAAACGCCACTAAAAACTTATGAAT
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAACTGATCAAT
* *
85744670 AGCAGCATTTTTGTCC
66 AGCAGCGTTTTTGGCC
*
85744686 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTTGGCCCAAACGCCACTAAAAACTGATCAA
1 AAACGCCACTAAAAACTGATCAATAGCGGCG-TTTTTAGCCCAAACGCCACTAAAAACTGATCAA
* * *
85744751 TAGCTGCATTTTTTGCC
65 TAGCAGCGTTTTTGGCC
* ** * *
85744768 TAAACGCCACTAAAAACTGATCAATAGCAGCGTTTTTA-CATAAAATGCCACTAAAAACTGAGCA
1 -AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGC-CCAAACGCCACTAAAAACTGATCA
*
85744832 ACAGCAGCGTTTTTGGTCC
64 ATAGCAGCGTTTTTGG-CC
* *
85744851 AAACGCCACT-AAAACTGATCAATAGCGGCGTTTTTGGTCCAAACGCCAC-AAAAA
1 AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAA
85744905 GTTGAGCAGC
Statistics
Matches: 332, Mismatches: 40, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
80 15 0.05
81 185 0.56
82 100 0.30
83 32 0.10
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (81 bp):
AAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTAGCCCAAACGCCACTAAAAACTGATCAAT
AGCAGCGTTTTTGGCC
Found at i:85745218 original size:7 final size:7
Alignment explanation
Indices: 85745208--85745279 Score: 54
Period size: 7 Copynumber: 10.1 Consensus size: 7
85745198 TCTTAAACAT
85745208 TAAACCC
1 TAAACCC
85745215 TAAACCC
1 TAAACCC
**
85745222 TAAATTC
1 TAAACCC
* *
85745229 TAAAACA
1 TAAACCC
*
85745236 TAAACCA
1 TAAACCC
*
85745243 TAAACAC
1 TAAACCC
* *
85745250 TAATCCA
1 TAAACCC
*
85745257 TAAACTC
1 TAAACCC
85745264 TAAAACCC
1 T-AAACCC
85745272 TAAACCC
1 TAAACCC
85745279 T
1 T
85745280 CTAAAAAAAT
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
7 43 0.88
8 6 0.12
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:85745252 original size:21 final size:21
Alignment explanation
Indices: 85745201--85745261 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
85745191 CTTTAAATCT
* * *
85745201 TAAACATTAAACCCTAAACCC
1 TAAACACTAAACCATAAACCA
** *
85745222 TAAATTCTAAAACATAAACCA
1 TAAACACTAAACCATAAACCA
*
85745243 TAAACACTAATCCATAAAC
1 TAAACACTAAACCATAAAC
85745262 TCTAAAACCC
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAACACTAAACCATAAACCA
Found at i:85745501 original size:36 final size:36
Alignment explanation
Indices: 85745423--85745502 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 36
85745413 GTTTAAGGCC
* *
85745423 TATGGTTTAGGGTTTAATGGTAGAATATATTTTAAGTT
1 TATGGTTTAGGGTTCAATGGT--AATATATGTTAAGTT
85745461 TATGGTTTAGGGTTCAATGGT-ATAGTATGTTAAGTT
1 TATGGTTTAGGGTTCAATGGTAATA-TATGTTAAGTT
85745497 TATGGT
1 TATGGT
85745503 GTGGGCCGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 3 0.08
36 16 0.41
38 20 0.51
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.46
Consensus pattern (36 bp):
TATGGTTTAGGGTTCAATGGTAATATATGTTAAGTT
Found at i:85746382 original size:15 final size:15
Alignment explanation
Indices: 85746360--85746410 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
85746350 TTGATTTACC
85746360 TAAA-ATTTAAATAT
1 TAAATATTTAAATAT
*
85746374 TAAATATTTAAATAA
1 TAAATATTTAAATAT
* *
85746389 TAATTATTCAATATAAT
1 TAAATATTTAA-AT-AT
85746406 TAAAT
1 TAAAT
85746411 TTTTTTCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.14
15 18 0.62
16 2 0.07
17 5 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAATATTTAAATAT
Found at i:85747353 original size:18 final size:18
Alignment explanation
Indices: 85747326--85747368 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
85747316 TTTTTTCTTC
*
85747326 ATGTTGTTTCATATGGGT
1 ATGTTATTTCATATGGGT
85747344 ATGTTATTTCATATGGGT
1 ATGTTATTTCATATGGGT
85747362 ATGTTAT
1 ATGTTAT
85747369 AGAGAAGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.21, C:0.05, G:0.23, T:0.51
Consensus pattern (18 bp):
ATGTTATTTCATATGGGT
Found at i:85756396 original size:35 final size:35
Alignment explanation
Indices: 85756305--85756471 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
85756295 CATGGAAAAG
* *
85756305 TGTGAAATGTAGTTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
*
85756340 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
85756375 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGT
** * *
85756415 TAAGAAATGTAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGT
**
85756450 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
85756472 TCAATGAGGA
Statistics
Matches: 115, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
34 1 0.01
35 81 0.70
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 29 0.25
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
Found at i:85756428 original size:75 final size:75
Alignment explanation
Indices: 85756305--85756475 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
85756295 CATGGAAAAG
* ** *
85756305 TGTGAAATGTAGTTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
85756364 CCATACTGAGC
65 CCATACCGAGC
85756375 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
85756440 CATACCGAGT
66 CATACCGAGC
**
85756450 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
85756476 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 17 0.20
73 4 0.05
74 5 0.06
75 61 0.70
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:85757938 original size:132 final size:132
Alignment explanation
Indices: 85757701--85757944 Score: 303
Period size: 132 Copynumber: 1.8 Consensus size: 132
85757691 TTGCCTCGCC
** * * * * *
85757701 TTTAGAAAACACGGATGAAATTCCAAAGGGATATTCGATTATTTTGAACAAATGGGAGATTGCAA
1 TTTAGAAAACACAAATGAAATTCCAAAGAGACATTCAATTATTTTGAACAAATGAGAAATTGCAA
* * * *
85757766 CCCAGTACGATAGGGCACTATTCCCTGAATTGCTAAACATCGAACATTTCCTTCGTTTTAAAAAG
66 CCCAGCACGATAGGGCACGATTCCCTGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAAAG
85757831 TT
131 TT
* **
85757833 TTTAGAAAACACAAATGAAATTCTAAAGAGACATTCAATTATTTTGGGCAACA-GAGAAATTGCA
1 TTTAGAAAACACAAATGAAATTCCAAAGAGACATTCAATTATTTTGAACAA-ATGAGAAATTGCA
* * *
85757897 ACCCAGCACGGTAGGGCACGATT-TCTCGAATTTCCAAACATCAAACAT
65 ACCCAGCACGATAGGGCACGATTCCCT-GAATTGCCAAACATCAAACAT
85757945 CGCCTCCATT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
131 2 0.02
132 90 0.97
133 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (132 bp):
TTTAGAAAACACAAATGAAATTCCAAAGAGACATTCAATTATTTTGAACAAATGAGAAATTGCAA
CCCAGCACGATAGGGCACGATTCCCTGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAAAG
TT
Found at i:85760739 original size:25 final size:25
Alignment explanation
Indices: 85760705--85760753 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
85760695 GTTTTGGGTG
85760705 TTGGGTTTAGGGGCTGTAAACGGGA
1 TTGGGTTTAGGGGCTGTAAACGGGA
*
85760730 TTGGGTTTAGGGGTTGTAAACGGG
1 TTGGGTTTAGGGGCTGTAAACGGG
85760754 CCGGGCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.06, G:0.45, T:0.31
Consensus pattern (25 bp):
TTGGGTTTAGGGGCTGTAAACGGGA
Found at i:85763977 original size:50 final size:50
Alignment explanation
Indices: 85763895--85764071 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
85763885 CCATGGCAAC
*
85763895 AAGTGATAAGTGATAGCTTCGGCTACAGTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
85763945 AAGTGATAAGTAATAGCTTCGGCTGCACTTATCTAATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
85763995 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
85764045 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
85764072 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 91 0.79
51 24 0.21
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:85764085 original size:31 final size:31
Alignment explanation
Indices: 85764047--85764195 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
85764037 ACAAATGACA
85764047 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
85764078 AGTGAAAAGTGGTAGCTTCTGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
85764109 AGTGAAAAGTGGTAGCTCCGACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
85764140 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
85764171 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
85764196 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:85764366 original size:49 final size:48
Alignment explanation
Indices: 85764295--85764426 Score: 141
Period size: 49 Copynumber: 2.9 Consensus size: 48
85764285 ACATCAGTGA
* *
85764295 GATATGTGATTCGTGTAAGACCATAGCTAAGCTATGTCATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTAAGCTATGGCATCGATATAT
* * **
85764343 GATATGTGATTATGTGTAAGACCATAGTTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTAAGCTATGGCATCGATATAT
**
85764392 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGATTCGTGTAAGACCATAGCTAAGCTATGGCATC
85764427 ATTATGTGAA
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
42 28 0.37
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.16
49 33 0.43
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTAAGCTATGGCATCGATATAT
Found at i:85764402 original size:42 final size:42
Alignment explanation
Indices: 85764343--85764470 Score: 177
Period size: 42 Copynumber: 3.0 Consensus size: 42
85764333 ATCGATATGT
*
85764343 GATATGTGATTATGTGTAAGACCATAGTTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
* *
85764385 GATATATGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
* * **
85764427 -ATTATGTGAAGATGTGTAAGGCCATAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
85764469 GA
1 GA
85764471 GAAAACGAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
41 1 0.01
42 73 0.97
43 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
Found at i:85766704 original size:22 final size:22
Alignment explanation
Indices: 85766652--85766714 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
85766642 TAAATAAACT
*
85766652 ATATTTTAAATATTAAA-ATATA
1 ATATTATAAAT-TTAAATATATA
* *
85766674 ACCAATATAAATTTAAATATATA
1 A-TATTATAAATTTAAATATATA
*
85766697 ATATTATATATTTAAATA
1 ATATTATAAATTTAAATA
85766715 AATTTCAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATTATAAATTTAAATATATA
Found at i:85769831 original size:30 final size:26
Alignment explanation
Indices: 85769804--85769863 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
85769794 GTTAGTAATT
* *
85769804 ATTTTTTAAAATTTGAAGGGATTAGTA
1 ATTTTTTTAAA-TAGAAGGGATTAGTA
85769831 ATTTTTTTAAATAGAAGGGATTAGT-
1 ATTTTTTTAAATAGAAGGGATTAGTA
85769856 -TTTTTTTA
1 ATTTTTTTA
85769864 TGTTATTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 8 0.26
26 13 0.42
27 10 0.32
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (26 bp):
ATTTTTTTAAATAGAAGGGATTAGTA
Found at i:85770018 original size:105 final size:105
Alignment explanation
Indices: 85769906--85770169 Score: 374
Period size: 104 Copynumber: 2.5 Consensus size: 105
85769896 TTAGTAATTA
* * *
85769906 TTATAAATTGTTTGTGTTTAATTTAGTGTTTTATTGTAATTTTTTTATGAATGTAATTTTTTTTA
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTTATTGTGATTTTTTTATGAATGTAATATTTTTTA
*
85769971 AAATTA-TTTAAAGTTATTTTGTTAGTAATTTATGATTATG
65 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* *
85770011 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTTTGA-TTTTTTATGAATCTAA-ATTTTTTAA
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTTATGAATGTAATATTTTTTAA
*
85770074 AATTATTTTTAAAGTTATTTTGTTAGTAATTTATTATTAGG
66 AATTA-TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * * * *
85770115 CTACAAATTGTTTGGGTTTAGTTTACTGTTTATTGTGATTTTTTTGT-AATGTAAT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTTATGAATGTAAT
85770170 GTAATTTAAT
Statistics
Matches: 141, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
102 13 0.09
103 15 0.11
104 79 0.56
105 34 0.24
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.58
Consensus pattern (105 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTTATGAATGTAATATTTTTTAA
AATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
Found at i:85770218 original size:19 final size:21
Alignment explanation
Indices: 85770173--85770215 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
85770163 ATGTAATGTA
85770173 ATTT-AATTTGTTTTTGATTT
1 ATTTGAATTTGTTTTTGATTT
*
85770193 ATTTGAATTT-TTTTTGGTTT
1 ATTTGAATTTGTTTTTGATTT
85770213 ATT
1 ATT
85770216 GAAATGTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (21 bp):
ATTTGAATTTGTTTTTGATTT
Found at i:85770460 original size:21 final size:22
Alignment explanation
Indices: 85770409--85770461 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
85770399 TTATTGTAAT
*
85770409 TATATTATTATTGTACTATATT
1 TATATTATTATTGTACTATATG
* *
85770431 TATCTTATTATT-TACTGTATG
1 TATATTATTATTGTACTATATG
*
85770452 TATAATATTA
1 TATATTATTA
85770462 ATGTGTTTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TATATTATTATTGTACTATATG
Found at i:85773294 original size:19 final size:17
Alignment explanation
Indices: 85773260--85773296 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
85773250 GTTTCTTTGT
85773260 TTTTCTTTTATATTTTA
1 TTTTCTTTTATATTTTA
85773277 TTTTCTTTGTATTATTTTA
1 TTTTCTTT-TA-TATTTTA
85773296 T
1 T
85773297 CATTTAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTATATTTTA
Found at i:85777188 original size:22 final size:23
Alignment explanation
Indices: 85777160--85777251 Score: 80
Period size: 24 Copynumber: 3.9 Consensus size: 23
85777150 AACTTACCGA
85777160 TTCAGCTCGAAAGAGCTTAC-TG
1 TTCAGCTCGAAAGAGCTTACGTG
*
85777182 TTCAGCTC-AATAGAGCTTACCGTT
1 TTCAGCTCGAA-AGAGCTTA-CGTG
* * *
85777206 TTTAGCCCGATAGAGCTTACTGTG
1 TTCAGCTCGAAAGAGCTTAC-GTG
*
85777230 TATCAGCTCAATAAGAGCTTAC
1 T-TCAGCTCGA-AAGAGCTTAC
85777252 CAACCATGAC
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.04
22 16 0.30
23 2 0.04
24 18 0.33
25 7 0.13
26 9 0.17
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (23 bp):
TTCAGCTCGAAAGAGCTTACGTG
Found at i:85777221 original size:46 final size:45
Alignment explanation
Indices: 85777124--85777252 Score: 132
Period size: 46 Copynumber: 2.7 Consensus size: 45
85777114 CATAGCTCGT
* * * * *
85777124 AAGAGCTTACTATTTCAGCTCATTGGAACTTACCGATTCAGCTCGA
1 AAGAGCTTACT-GTTCAGCTCAATAGAGCTTACCGATTCAGCCCGA
* *
85777170 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGTTTTTAGCCCGA
1 AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCG-ATTCAGCCCGA
*
85777216 TAGAGCTTACTGTGTATCAGCTCAATAAGAGCTTACC
1 AAGAGCTTAC--TGT-TCAGCTCAAT-AGAGCTTACC
85777253 AACCATGACT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 19 0.27
46 28 0.40
48 3 0.04
49 10 0.14
50 10 0.14
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
AAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATTCAGCCCGA
Found at i:85787152 original size:31 final size:31
Alignment explanation
Indices: 85787104--85787218 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
85787094 TTAGTCTTGA
**
85787104 CATAT-ACTGGGGTAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
85787134 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
*
85787165 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
* *
85787196 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCAAAGCCTTT
85787219 ATTGTAAACG
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCAAAGCCTTTTCATAAAT
Found at i:85787289 original size:42 final size:42
Alignment explanation
Indices: 85787242--85787333 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
85787232 TGGCCCATAG
* ** *
85787242 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
85787284 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
85787326 GCCCATTT
1 GCCCATTT
85787334 GGGGAGAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:85787550 original size:26 final size:26
Alignment explanation
Indices: 85787466--85787601 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
85787456 CTAGAGGCCT
85787466 AGCCACTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
85787490 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
85787515 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
85787541 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
85787567 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
85787593 AGCCCTTTT
1 AGCCCTTTT
85787602 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.33
26 58 0.57
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:85787590 original size:52 final size:51
Alignment explanation
Indices: 85787466--85787601 Score: 233
Period size: 52 Copynumber: 2.7 Consensus size: 51
85787456 CTAGAGGCCT
85787466 AGCCACTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
85787515 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
85787567 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
85787602 GCACTTCCTC
Statistics
Matches: 83, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.08
50 10 0.12
51 25 0.30
52 36 0.43
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:85787676 original size:20 final size:20
Alignment explanation
Indices: 85787651--85787737 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
85787641 TTATGAATAC
85787651 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
85787671 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
85787691 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
85787711 ATCATGTGCATATCATATC-T
1 ATCATGTGCATTTCATA-CAT
85787731 ATCATGT
1 ATCATGT
85787738 ATATCATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 62 0.98
21 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.41
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:85787743 original size:18 final size:19
Alignment explanation
Indices: 85787651--85787747 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 19
85787641 TTATGAATAC
*
85787651 ATCATGTGCATTTCATA-CAT
1 ATCATGT-CATATCATATC-T
*
85787671 ATCATGTGCATTTCATA-CAT
1 ATCATGT-CATATCATATC-T
* *
85787691 ATCATGTGCATTTTATA-CAT
1 ATCATGT-CATATCATATC-T
85787711 ATCATGTGCATATCATATCT
1 ATCATGT-CATATCATATCT
85787731 ATCATGT-ATATCATATC
1 ATCATGTCATATCATATC
85787748 CCACGTATCA
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
18 10 0.14
20 62 0.85
21 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (19 bp):
ATCATGTCATATCATATCT
Found at i:85788593 original size:27 final size:27
Alignment explanation
Indices: 85788540--85788775 Score: 136
Period size: 27 Copynumber: 8.7 Consensus size: 27
85788530 TTTCATCCTA
* * * * *
85788540 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
85788567 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
85788594 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
85788623 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * * *
85788650 TAGGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
85788677 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * *
85788704 TAGGGGTATTT-GGTAATTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
85788729 CTAGGAGTATTTTGATAATTTTACAAAC
1 CAAGG-GTATTTCGGTAATTTTATAAAC
* * *
85788757 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
85788776 CTATCCTACA
Statistics
Matches: 163, Mismatches: 39, Indels: 14
0.75 0.18 0.06
Matches are distributed among these distances:
25 2 0.01
26 21 0.13
27 108 0.66
28 17 0.10
29 15 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:85788739 original size:53 final size:54
Alignment explanation
Indices: 85788627--85788775 Score: 203
Period size: 53 Copynumber: 2.8 Consensus size: 54
85788617 GAAAGTCAAG
* ** *
85788627 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTCACAAACCAGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGT
* *
85788681 GGTATTTCGGTAATTTTACAAACTAGGGGTA-TTTGGTAATTTTACAAACTAG-
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGT
* *
85788733 GAGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATT
1 G-GTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
85788776 CTATCCTACA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 47 0.55
54 37 0.44
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGT
Found at i:85788789 original size:80 final size:81
Alignment explanation
Indices: 85788626--85788808 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 81
85788616 AGAAAGTCAA
* ** * * * *
85788626 GGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAACTAGGAGTATTTTGATAATTTCACAAACCAGGGGTATTTCGG
*
85788691 TAATTTTACAAACTAG
66 TAATTCTACAAACTAG
* * * *
85788707 GGGTATTT-GGTAATTTTACAAACTAGGAGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAACTAGGAGTATTTTGATAATTTCACAAACCAGGGGTATTTCGG
**
85788771 TAATTCTATCCTAC-AG
66 TAATTCTA-CAAACTAG
*
85788787 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
85788809 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 63 0.74
81 22 0.26
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAACTAGGAGTATTTTGATAATTTCACAAACCAGGGGTATTTCGG
TAATTCTACAAACTAG
Found at i:85788794 original size:54 final size:51
Alignment explanation
Indices: 85788626--85788808 Score: 179
Period size: 54 Copynumber: 3.4 Consensus size: 51
85788616 AGAAAGTCAA
** *
85788626 GGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTT-TGTAATTTTACAAACTAGGGGTATTTTGGTAATTT-ACAAA-CAG
* *
85788680 TGGTATTTCGGTAATTTTACAAACTAGGGGTA-TTTGGTAATTTTACAAACTAG
1 GGGTATTT-TGTAATTTTACAAACTAGGGGTATTTTGGTAA-TTTACAAAC-AG
* **
85788733 GAGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTACAG
1 GGGTATTTTG-TAATTTTACAAACTAGGGGTATTTTGGTAATT-TA-CAAACAG
* *
85788787 GGGTATTTCAGTAATTTCACAA
1 GGGTATTT-TGTAATTTTACAA
85788809 TCGAGGGTAA
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 44 0.40
54 59 0.54
55 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (51 bp):
GGGTATTTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTACAAACAG
Found at i:85788815 original size:27 final size:26
Alignment explanation
Indices: 85788650--85788775 Score: 153
Period size: 27 Copynumber: 4.7 Consensus size: 26
85788640 TTTTGTAAAT
85788650 TAGGGGTATTTTGGTAATTTCACAAAC
1 TAGGGGTA-TTTGGTAATTTCACAAAC
* * *
85788677 CAGTGGTATTTCGGTAATTTTACAAAC
1 TAGGGGTATTT-GGTAATTTCACAAAC
*
85788704 TAGGGGTATTTGGTAATTTTACAAAC
1 TAGGGGTATTTGGTAATTTCACAAAC
* * *
85788730 TAGGAGTATTTTGATAATTTTACAAAC
1 TAGGGGTA-TTTGGTAATTTCACAAAC
85788757 TAGGGGTATTTTGGTAATT
1 TAGGGGTA-TTTGGTAATT
85788776 CTATCCTACA
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.28
27 63 0.72
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
TAGGGGTATTTGGTAATTTCACAAAC
Found at i:85788845 original size:27 final size:27
Alignment explanation
Indices: 85788807--85789003 Score: 193
Period size: 27 Copynumber: 7.3 Consensus size: 27
85788797 GTAATTTCAC
85788807 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAATGATAATTTTGTA
*
85788834 AA-CTGCGGGTAAAAT-AGTAATTTTGTA
1 AATC-GAGGGTAAAATGA-TAATTTTGTA
* *
85788861 AATCGAGGGTAAAACGATAATTCTGT-
1 AATCGAGGGTAAAATGATAATTTTGTA
* * * *
85788887 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGATAATTTTGTA
* *
85788914 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGATAATTTTGTA
* * * * *
85788941 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGATAATTTTGTA
* * **
85788968 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGATAATTTTGTA
85788995 AATCGAGGG
1 AATCGAGGG
85789004 CATTTTAGTA
Statistics
Matches: 147, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.16
27 121 0.82
28 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGATAATTTTGTA
Found at i:85788880 original size:54 final size:53
Alignment explanation
Indices: 85788807--85788981 Score: 242
Period size: 54 Copynumber: 3.3 Consensus size: 53
85788797 GTAATTTCAC
* * * * *
85788807 AATCGAGGGTAAAATGATAATTTTGTAAACTGCGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTAAA-TGAGGGTAAAATGGTAATTCTATA
* *
85788861 AATCGAGGGTAAAACGATAATTCTGTAATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATGAGGGTAAAATGGTAATTCTATA
* * *
85788914 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAAT-GAGGGTAAAATGGTAATTCTATA
85788968 AATCGAGGGTAAAA
1 AATCGAGGGTAAAA
85788982 TGGTAATTCT
Statistics
Matches: 108, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
53 47 0.44
54 61 0.56
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.29
Consensus pattern (53 bp):
AATCGAGGGTAAAACGATAATTTTGTAAATGAGGGTAAAATGGTAATTCTATA
Found at i:85788987 original size:54 final size:54
Alignment explanation
Indices: 85788807--85789003 Score: 236
Period size: 54 Copynumber: 3.7 Consensus size: 54
85788797 GTAATTTCAC
* * * * * *
85788807 AATCGAGGGTAAAATGATAATTTTGTAAA-CTGCGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATC-GAGGGTAAAATGGTAATTCTATA
*
85788861 AATCGAGGGTAAAACGATAATTCTGT-AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * *
85788914 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * **
85788968 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGG
85789004 CATTTTAGTA
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 45 0.36
54 80 0.64
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:85789015 original size:81 final size:80
Alignment explanation
Indices: 85788807--85789024 Score: 249
Period size: 80 Copynumber: 2.7 Consensus size: 80
85788797 GTAATTTCAC
* * ** * *
85788807 AATCGAGGGTAAAATGATAATTTTGTAAA-CTGCGGGTAAAATAGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTACAAATC-GAGGGCAAAATAGTAATTTTGTAAATCGAGGGT
*
85788871 AAAACGATAATTCTGT
65 AAAACGATAATTCTAT
* * * ** *
85788887 AATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAATAGTAATTTTGTAAATCGAGGGTA
*
85788952 AAACGGTAATTCTAT
66 AAACGATAATTCTAT
*** *
85788967 AAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGCATTTTAGTAATTTGGTAAAT
1 -AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAATAGTAATTTTGTAAAT
85789025 TAAAGTATTC
Statistics
Matches: 117, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 68 0.58
81 49 0.42
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (80 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAATAGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTAT
Found at i:85796945 original size:16 final size:16
Alignment explanation
Indices: 85796924--85796954 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85796914 ATATATGATT
*
85796924 TATATATCATCACATA
1 TATATACCATCACATA
85796940 TATATACCATCACAT
1 TATATACCATCACAT
85796955 TCATACAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (16 bp):
TATATACCATCACATA
Found at i:85806490 original size:27 final size:27
Alignment explanation
Indices: 85806460--85806547 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
85806450 ATTACCAAAG
* * *
85806460 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCAATTTACAAAATTACCGTTT
* *
85806487 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCGTTT
*
85806514 TACCCTCAGTTTACAAAATTACCGTTT
1 TACCCTCAATTTACAAAATTACCGTTT
85806541 TACCCTC
1 TACCCTC
85806548 GATTGTGAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCGTTT
Found at i:85806505 original size:54 final size:54
Alignment explanation
Indices: 85806447--85806551 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
85806437 ATCGACTTGT
* * *
85806447 AAAATTACCAAAGTACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTAC
*** *
85806501 AAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
85806552 GTGAAATTAC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTAC
Found at i:85806573 original size:27 final size:26
Alignment explanation
Indices: 85806543--85806731 Score: 132
Period size: 27 Copynumber: 7.0 Consensus size: 26
85806533 TACCGTTTTA
* **
85806543 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * *
85806570 CCCTG-TAGGATAGAATTACAAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
* *
85806597 CCCTAGTTTGTAAAATTACCAAAATAT
1 CCCT-GATTGTAAAATTACCAAAATAC
*
85806624 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * *
85806651 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
85806677 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
*
85806705 CCCTAATTTGTAAAATTA-CAGAAATAC
1 CCCTGA-TTGTAAAATTACCA-AAATAC
85806732 TGTTGACTTT
Statistics
Matches: 135, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.01
26 7 0.05
27 120 0.89
28 6 0.04
29 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:85806641 original size:54 final size:54
Alignment explanation
Indices: 85806583--85806731 Score: 203
Period size: 54 Copynumber: 2.8 Consensus size: 54
85806573 TGTAGGATAG
* *
85806583 AATTACAAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTCAATTTGTAA
* * * *
85806637 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
*
85806691 AATTACCAAAATACCCCTAATTTGTAAAATTA-CAGAAATAC
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATAC
85806732 TGTTGACTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:85806668 original size:81 final size:81
Alignment explanation
Indices: 85806583--85806731 Score: 221
Period size: 81 Copynumber: 1.8 Consensus size: 81
85806573 TGTAGGATAG
* * *
85806583 AATTACAAAAATACCC-CTAGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAATTACCA-A
1 AATTACAAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTA-CAGA
85806646 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
**
85806664 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACAGAAA
1 AATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACAGAAA
85806729 TAC
66 TAC
85806732 TGTTGACTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 2 0.03
81 58 0.95
82 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:85806806 original size:27 final size:27
Alignment explanation
Indices: 85806745--85806797 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
85806735 TGACTTTCTA
85806745 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
85806772 AAAATTACTGAAATACCCTTGGTTTA
1 AAAATTACTGAAATACCATTGGTTTA
85806798 TAGATTTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:85806914 original size:27 final size:27
Alignment explanation
Indices: 85806837--85806914 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
85806827 AAATGACTAA
*
85806837 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGAAT-GGTAAAATGACCGT
* * *
85806864 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGAATGGTAAAATGACCGT
*
85806891 AATACCCCTGCATGGTAAAATGAC
1 AATACCCCTGAATGGTAAAATGAC
85806915 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (27 bp):
AATACCCCTGAATGGTAAAATGACCGT
Found at i:85807647 original size:20 final size:20
Alignment explanation
Indices: 85807622--85807725 Score: 129
Period size: 20 Copynumber: 5.2 Consensus size: 20
85807612 GATATGATAT
*
85807622 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
**
85807642 ACATGATATGTACAAAATGC
1 ACATGATATGTATGAAATGC
* *
85807662 AGATGATATGTATGAAATGT
1 ACATGATATGTATGAAATGC
85807682 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
* *
85807702 ATATGATATATATGAAATGC
1 ACATGATATGTATGAAATGC
85807722 ACAT
1 ACAT
85807726 ACTGTATTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
20 69 0.97
21 2 0.03
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:85807692 original size:11 final size:11
Alignment explanation
Indices: 85807621--85807693 Score: 50
Period size: 11 Copynumber: 7.2 Consensus size: 11
85807611 GGATATGATA
85807621 TACATGAT-TG
1 TACATGATATG
*
85807631 -ATATGATATG
1 TACATGATATG
*
85807641 CACATGATATG
1 TACATGATATG
*
85807652 TACA--AAATG
1 TACATGATATG
* *
85807661 CAGATGATATG
1 TACATGATATG
*
85807672 T--ATGAAATG
1 TACATGATATG
85807681 TACATGATATG
1 TACATGATATG
85807692 TA
1 TA
85807694 TGAAATGCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
9 20 0.43
10 2 0.04
11 25 0.53
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (11 bp):
TACATGATATG
Found at i:85807875 original size:25 final size:26
Alignment explanation
Indices: 85807778--85807888 Score: 147
Period size: 26 Copynumber: 4.3 Consensus size: 26
85807768 GAGGAAGTGC
85807778 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
85807804 AAAAGGGATTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
85807830 AAAGGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
85807856 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
85807879 AAAAGAGGCT
1 AAAAG-GGCT
85807889 AGGCTTCCAG
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 5 0.07
24 9 0.12
25 8 0.11
26 52 0.70
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:85808101 original size:42 final size:42
Alignment explanation
Indices: 85808021--85808112 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
85808011 TAGTCTCCCC
* * ** *
85808021 AAATGGGCTTGCATAGATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
85808063 AAATGGGCTTGCATACATCCGTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
85808105 AAATGGGC
1 AAATGGGC
85808113 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:85808171 original size:31 final size:31
Alignment explanation
Indices: 85808136--85808214 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
85808126 CGTTTACAGG
85808136 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
85808167 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
85808198 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
85808215 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:85812491 original size:16 final size:16
Alignment explanation
Indices: 85812454--85812492 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
85812444 GTGAGGTGGA
*
85812454 TATTTATTGGATTTTTG
1 TATTT-TTGGATTTCTG
*
85812471 GATTTTTGGATTTCTG
1 TATTTTTGGATTTCTG
85812487 TATTTT
1 TATTTT
85812493 GGTATGTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.15, C:0.03, G:0.18, T:0.64
Consensus pattern (16 bp):
TATTTTTGGATTTCTG
Found at i:85819269 original size:20 final size:20
Alignment explanation
Indices: 85819232--85819273 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
85819222 AGGCTAAAGC
85819232 TAAATTAATAAAATAAATAA
1 TAAATTAATAAAATAAATAA
85819252 TAAA-TAATAAAATAAAATAA
1 TAAATTAATAAAAT-AAATAA
85819272 TA
1 TA
85819274 TCTTCTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAATTAATAAAATAAATAA
Found at i:85820549 original size:7 final size:7
Alignment explanation
Indices: 85820537--85820570 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
85820527 ATTATTTCAT
85820537 TTTATTA
1 TTTATTA
85820544 TTTATTA
1 TTTATTA
85820551 TTTATTA
1 TTTATTA
85820558 TTTATTA
1 TTTATTA
85820565 TTTATT
1 TTTATT
85820571 TTATTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:85825396 original size:33 final size:33
Alignment explanation
Indices: 85825354--85825418 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
85825344 TAACAATATT
85825354 ACTTTCTTTAAATTTTAGTTTTTAAAATCTAAA
1 ACTTTCTTTAAATTTTAGTTTTTAAAATCTAAA
85825387 ACTTTCTTTAAATTTTAGTTTTTAAAATCTAA
1 ACTTTCTTTAAATTTTAGTTTTTAAAATCTAA
85825419 CATACTAACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.03, T:0.52
Consensus pattern (33 bp):
ACTTTCTTTAAATTTTAGTTTTTAAAATCTAAA
Found at i:85829828 original size:25 final size:25
Alignment explanation
Indices: 85829781--85829829 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
85829771 TCCGAGCTAA
*
85829781 TCAGGAAACTCATAAGAGTTTTTAC
1 TCAGGAAACTCATAAGAGCTTTTAC
*
85829806 TCAGGAAGCTCATAA-AGCCTTTTA
1 TCAGGAAACTCATAAGAG-CTTTTA
85829830 GATATCTCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (25 bp):
TCAGGAAACTCATAAGAGCTTTTAC
Found at i:85831058 original size:16 final size:16
Alignment explanation
Indices: 85831037--85831068 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
85831027 TCCTGTTAAC
85831037 AAAAAAAATAAAAATG
1 AAAAAAAATAAAAATG
85831053 AAAAAAAATAAAAATG
1 AAAAAAAATAAAAATG
85831069 GGAAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAAAAATAAAAATG
Found at i:85835143 original size:42 final size:41
Alignment explanation
Indices: 85835097--85835237 Score: 151
Period size: 42 Copynumber: 3.3 Consensus size: 41
85835087 CATAGTTCAA
85835097 CTATGGTCTTACACATCTTCACATAATGATGCCATATCCCAG
1 CTATGGTCTTACACAT-TTCACATAATGATGCCATATCCCAG
* *
85835139 CTATGGTCTTACACATATTCATAT-ATCGATGCCATAACCCAG
1 CTATGGTCTTACACAT-TTCACATAAT-GATGCCATATCCCAG
*
85835181 CTATGGTCTTACACGA-ATCACATATCTCACTGATGCCATATCCCAG
1 CTATGGTCTTACAC-ATTTCACATA----A-TGATGCCATATCCCAG
*
85835227 ATATGGTCTTA
1 CTATGGTCTTA
85835238 TACAGTAGCA
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
41 7 0.08
42 50 0.60
43 1 0.01
46 25 0.30
47 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (41 bp):
CTATGGTCTTACACATTTCACATAATGATGCCATATCCCAG
Found at i:85835287 original size:47 final size:46
Alignment explanation
Indices: 85835124--85835284 Score: 181
Period size: 47 Copynumber: 3.6 Consensus size: 46
85835114 TTCACATAAT
*
85835124 GATGCCATATCCCAGCTATGGTCTTACACA-TATTCATATAT----C
1 GATGCCATATCCCAGATATGGTCTTACACAGTA-TCATATATCCACC
* * * * *
85835166 GATGCCATAACCCAGCTATGGTCTTACAC-GAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTACACAGTATCATATATC-CACC
* *
85835212 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTACACAGTATCATATATC-CACC
85835259 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
85835285 TACGGAAATC
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
41 7 0.07
42 29 0.29
46 26 0.26
47 38 0.38
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTACACAGTATCATATATCCACC
Found at i:85835351 original size:31 final size:31
Alignment explanation
Indices: 85835316--85835495 Score: 254
Period size: 31 Copynumber: 5.8 Consensus size: 31
85835306 CTTGTCACTT
*
85835316 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
85835347 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
85835378 GTACCCGGAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
85835409 GTAGTCGGAA-CTACCACTTTTCACTGATCAG
1 GTAG-CCGAAGCTACCACTTTTCACTGATCAG
* *
85835440 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
85835471 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
85835496 TGTCATTTGT
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 4 0.03
31 128 0.95
32 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:85835581 original size:50 final size:51
Alignment explanation
Indices: 85835471--85835599 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
85835461 CACTAATCAG
* * *
85835471 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
85835522 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
*
85835572 GTAGTCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
85835600 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:85839496 original size:13 final size:13
Alignment explanation
Indices: 85839478--85839503 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85839468 AAGTAATCGT
85839478 ACACGGGCGTGTC
1 ACACGGGCGTGTC
85839491 ACACGGGCGTGTC
1 ACACGGGCGTGTC
85839504 CCTCCCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:85843611 original size:55 final size:55
Alignment explanation
Indices: 85843527--85843630 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 55
85843517 GCGACATGGC
* *
85843527 CGTGGGCAAGCCTGCCAAATCAACACAGGCGTGAAACACACCCGTGCCTTGAAAT
1 CGTGGCCAAACCTGCCAAATCAACACAGGCGTGAAACACACCCGTGCCTTGAAAT
* * ** *
85843582 CGTGGCCAAACCTGTCAAATTAACACAGGCGTGCGACACGCCCGTGCCT
1 CGTGGCCAAACCTGCCAAATCAACACAGGCGTGAAACACACCCGTGCCT
85843631 AGCAACCTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.28, C:0.33, G:0.24, T:0.15
Consensus pattern (55 bp):
CGTGGCCAAACCTGCCAAATCAACACAGGCGTGAAACACACCCGTGCCTTGAAAT
Found at i:85843649 original size:55 final size:55
Alignment explanation
Indices: 85843526--85843662 Score: 139
Period size: 55 Copynumber: 2.5 Consensus size: 55
85843516 TGCGACATGG
* * * * *
85843526 CCGTGGGCAAGCCTGCCAAATCAACACAGGCGTGAAACACACCCGTGCCTTGAAA
1 CCGTGGCCAAACCTGTCAAATTAACACAGGCGTGAAACACACCCGTGCCTAGAAA
* ** * *
85843581 TCGTGGCCAAACCTGTCAAATTAACACAGGCGTGCGACACGCCCGTGCCTAGCAA
1 CCGTGGCCAAACCTGTCAAATTAACACAGGCGTGAAACACACCCGTGCCTAGAAA
* * * * *
85843636 CCTTGGTCTAACCTGTTAGATTAACAC
1 CCGTGGCCAAACCTGTCAAATTAACAC
85843663 GGGTATGTGA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.18
Consensus pattern (55 bp):
CCGTGGCCAAACCTGTCAAATTAACACAGGCGTGAAACACACCCGTGCCTAGAAA
Found at i:85844206 original size:12 final size:13
Alignment explanation
Indices: 85844181--85844219 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
85844171 TTCTATTGTC
85844181 TTACTCATGC-CA
1 TTACTCATGCTCA
85844193 TTACT-ATGCTCA
1 TTACTCATGCTCA
85844205 TT-CTCATGCT-A
1 TTACTCATGCTCA
85844216 TTAC
1 TTAC
85844220 CATACTAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.41
Consensus pattern (13 bp):
TTACTCATGCTCA
Found at i:85849365 original size:16 final size:16
Alignment explanation
Indices: 85849346--85849376 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85849336 CTTATTCACT
85849346 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
85849362 TACTTACTTACTTAA
1 TACTCACTTACTTAA
85849377 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:85849382 original size:20 final size:20
Alignment explanation
Indices: 85849343--85849382 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
85849333 AAACTTATTC
* *
85849343 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
85849363 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
85849383 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:85849493 original size:23 final size:24
Alignment explanation
Indices: 85849455--85849499 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
85849445 TTTGCTCTTC
*
85849455 TAGTATGAACTTGTCTTACCTTTT
1 TAGTATGAACTCGTCTTACCTTTT
85849479 TAGTAT-AACTCGTCTTACCTT
1 TAGTATGAACTCGTCTTACCTT
85849500 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (24 bp):
TAGTATGAACTCGTCTTACCTTTT
Found at i:85849754 original size:55 final size:53
Alignment explanation
Indices: 85849568--85849822 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
85849558 ACGCGGGTAC
* * * * * *
85849568 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TTGA-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAGAA
* * *
85849617 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTACGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAGAA
* * *
85849670 CTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTA-AG-AA
* *
85849725 CTTATCAATGCCATGTCTTAACATGGTCTTACAT--GATTACCTTGCCTT-AGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGA-T-CCTTGCCTTAAG-AA
* * * *
85849778 CCTTACCAATTGACATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
85849823 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
49 40 0.23
52 2 0.01
53 52 0.30
54 9 0.05
55 66 0.39
56 1 0.01
57 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAGAA
Found at i:85849759 original size:108 final size:110
Alignment explanation
Indices: 85849615--85849815 Score: 293
Period size: 108 Copynumber: 1.8 Consensus size: 110
85849605 ATCCTTTTGA
* * *
85849615 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGCCTTACG-AA-CTCACCA
1 AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATTA-CCTTGCCTTA-GAAACCTCACCA
* *
85849677 A-TGCCATGTCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
64 ATTGACATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
* *
85849723 AACTTATCAATGCCATGTCTTAACATGGTCTTACATGATTACCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATTACCTTGCCTTAGAAACCTCACCAAT
85849788 TGACATGCCTTGGCATGGTCTTACATGG
66 TGACATGCCTTGGCATGGTCTTACATGG
85849816 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
107 1 0.01
108 46 0.56
109 9 0.11
110 26 0.32
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATTACCTTGCCTTAGAAACCTCACCAAT
TGACATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
Found at i:85855577 original size:40 final size:40
Alignment explanation
Indices: 85855498--85855715 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
85855488 AAGCCAGGTA
* * * *
85855498 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
85855537 CCTTCGGGACATAGCCCGGATGTAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
85855577 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85855617 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
85855657 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
85855697 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
85855716 TTATCATCCG
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 143 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85859588 original size:39 final size:40
Alignment explanation
Indices: 85859493--85859754 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
85859483 TTGAATGATG
*
85859493 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
85859531 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
85859572 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
85859611 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
85859650 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
85859689 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
85859728 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
85859755 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:85876805 original size:7 final size:7
Alignment explanation
Indices: 85876795--85876845 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
85876785 ATCAAGTATT
*
85876795 GAAACAA
1 GAAAAAA
85876802 GAAAAAA
1 GAAAAAA
85876809 G--AAAA
1 GAAAAAA
85876814 -AAAAAA
1 GAAAAAA
85876820 GAAAAAA
1 GAAAAAA
85876827 GAAAAAA
1 GAAAAAA
*
85876834 AAAACAAA
1 GAAA-AAA
85876842 GAAA
1 GAAA
85876846 GAAAATGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
5 4 0.11
6 4 0.11
7 23 0.62
8 6 0.16
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:85876819 original size:11 final size:11
Alignment explanation
Indices: 85876803--85876850 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
85876793 TTGAAACAAG
85876803 AAAAAAGAAAA
1 AAAAAAGAAAA
85876814 AAAAAAGAAAA
1 AAAAAAGAAAA
85876825 AAGAAAA-AAAA
1 AA-AAAAGAAAA
*
85876836 AACAAAGAAAGA
1 AAAAAAGAAA-A
85876848 AAA
1 AAA
85876851 TGAATAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 3 0.09
11 22 0.69
12 7 0.22
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:85876823 original size:18 final size:18
Alignment explanation
Indices: 85876800--85876850 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
85876790 GTATTGAAAC
85876800 AAGAAAAAAGAAAAAAAA
1 AAGAAAAAAGAAAAAAAA
85876818 AAGAAAAAAGAAAAAAAA
1 AAGAAAAAAGAAAAAAAA
*
85876836 AACAAAGAAAGAAAA
1 AAGAAA-AAAGAAAA
85876851 TGAATAAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 23 0.74
19 8 0.26
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAGAAAAAAAA
Found at i:85876829 original size:25 final size:26
Alignment explanation
Indices: 85876795--85876850 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
85876785 ATCAAGTATT
*
85876795 GAAACAAGAAAAAAGAAAA-AAA-AAA
1 GAAAAAAGAAAAAA-AAAACAAAGAAA
85876820 GAAAAAAGAAAAAAAAAACAAAGAAA
1 GAAAAAAGAAAAAAAAAACAAAGAAA
85876846 GAAAA
1 GAAAA
85876851 TGAATAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 4 0.14
25 16 0.57
26 8 0.29
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (26 bp):
GAAAAAAGAAAAAAAAAACAAAGAAA
Found at i:85876833 original size:15 final size:15
Alignment explanation
Indices: 85876803--85876850 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
85876793 TTGAAACAAG
*
85876803 AAAAAAGAAA-AAAA
1 AAAAAACAAAGAAAA
85876817 AAAGAAA-AAAGAAAA
1 AAA-AAACAAAGAAAA
85876832 AAAAAACAAAGAAAGA
1 AAAAAACAAAGAAA-A
85876848 AAA
1 AAA
85876851 TGAATAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.30
15 17 0.57
16 4 0.13
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAACAAAGAAAA
Found at i:85884467 original size:30 final size:30
Alignment explanation
Indices: 85884432--85884490 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
85884422 ATTTTATTGC
85884432 TAATTTTAG-TATTATTTTAAAGACATTTGT
1 TAATTTT-GTTATTATTTTAAAGACATTTGT
*
85884462 TAATTTTGTTATTATTTTAGAGACATTTG
1 TAATTTTGTTATTATTTTAAAGACATTTG
85884491 ATTGTTAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGACATTTGT
Found at i:85891696 original size:38 final size:38
Alignment explanation
Indices: 85891654--85891730 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
85891644 TTAGAGACAT
85891654 GGCCTACCAATAGTCATATAATAACTATTTTTAGTTAA
1 GGCCTACCAATAGTCATATAATAACTATTTTTAGTTAA
85891692 GGCCTACCAATAGTCATATAATAACTATTTTTAGTTAA
1 GGCCTACCAATAGTCATATAATAACTATTTTTAGTTAA
85891730 G
1 G
85891731 CCTCGAGACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (38 bp):
GGCCTACCAATAGTCATATAATAACTATTTTTAGTTAA
Found at i:85893527 original size:24 final size:23
Alignment explanation
Indices: 85893500--85893682 Score: 79
Period size: 24 Copynumber: 7.7 Consensus size: 23
85893490 ACACACTTTA
85893500 GCTCTTATGAGCTTCCCGATTATG
1 GCTCTTATGAGCTTCCCG-TTATG
* *
85893524 GCTCTTCATGAGCTTCTCGTTAATTT
1 GCTCTT-ATGAGCTTCCCGTT-A-TG
* *
85893550 GCTCTTTGTGAGCTTCCCGATATG
1 GCTC-TTATGAGCTTCCCGTTATG
*
85893574 G--C-T-TGAACTTCCCGATATATG
1 GCTCTTATGAGCTTCCCG-T-TATG
* * *** *
85893595 GTTATCCGGAGCTTCCTGTTAATG
1 GCTCTTATGAGCTTCCCGTT-ATG
* *
85893619 GCTCTT-CGAAGCTACCCGTTATTG
1 GCTCTTATG-AGCTTCCCGTTA-TG
* * * *
85893643 GCTCGTATGAGCTTTCCGGCTATA
1 GCTCTTATGAGC-TTCCCGTTATG
85893667 GCTCTTATGAGCTTCC
1 GCTCTTATGAGCTTCC
85893683 TGTTTTAGCC
Statistics
Matches: 118, Mismatches: 26, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
19 10 0.08
20 1 0.01
21 5 0.04
22 1 0.01
23 7 0.06
24 48 0.41
25 28 0.24
26 16 0.14
27 2 0.02
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.37
Consensus pattern (23 bp):
GCTCTTATGAGCTTCCCGTTATG
Found at i:85898569 original size:23 final size:19
Alignment explanation
Indices: 85898515--85898571 Score: 51
Period size: 23 Copynumber: 2.7 Consensus size: 19
85898505 GCTATATTAT
85898515 AAATATTGTTTTTATTTAA
1 AAATATTGTTTTTATTTAA
* *
85898534 AAACATCTATTTTTATTTTTAAA
1 AAATAT-TGTTTTTA--TTT-AA
85898557 AAATATGTGTTTTTA
1 AAATAT-TGTTTTTA
85898572 AACTTAAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
19 5 0.17
20 7 0.24
22 3 0.10
23 14 0.48
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (19 bp):
AAATATTGTTTTTATTTAA
Found at i:85899711 original size:13 final size:13
Alignment explanation
Indices: 85899695--85899719 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85899685 AATTTTGGAT
85899695 GAAAATATAAAAG
1 GAAAATATAAAAG
85899708 GAAAATATAAAA
1 GAAAATATAAAA
85899720 CCGCCGAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
GAAAATATAAAAG
Found at i:85901230 original size:47 final size:47
Alignment explanation
Indices: 85901161--85901265 Score: 165
Period size: 47 Copynumber: 2.2 Consensus size: 47
85901151 GAGGAAACTT
*
85901161 AATTATGCATGATTGAAACTTATTAATGGATTCCACTTCCCTTTCTC
1 AATTATGCATGATTGAAACTTATCAATGGATTCCACTTCCCTTTCTC
* *
85901208 AATTATGCATGATTGAAGCTTATCAATTGATTCCACTTCCCTTTCTC
1 AATTATGCATGATTGAAACTTATCAATGGATTCCACTTCCCTTTCTC
* *
85901255 AGTTATACATG
1 AATTATGCATG
85901266 CGTAATTCGA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (47 bp):
AATTATGCATGATTGAAACTTATCAATGGATTCCACTTCCCTTTCTC
Found at i:85901290 original size:18 final size:18
Alignment explanation
Indices: 85901267--85901310 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
85901257 TTATACATGC
*
85901267 GTAATTCGAATAATTCGG
1 GTAATTCGAATAATTCAG
*
85901285 GTAATTCGATTAATTCAG
1 GTAATTCGAATAATTCAG
*
85901303 TTAATTCG
1 GTAATTCG
85901311 GTTAATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (18 bp):
GTAATTCGAATAATTCAG
Found at i:85907235 original size:14 final size:14
Alignment explanation
Indices: 85907216--85907245 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
85907206 TTATATCGAG
85907216 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
85907230 ACCAATCCAATTCA
1 ACCAATCCAAATCA
85907244 AC
1 AC
85907246 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:85918970 original size:27 final size:27
Alignment explanation
Indices: 85918931--85918982 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
85918921 TGATGAACTT
85918931 TTTCACCGCTCAGATATCTAAAATGGG
1 TTTCACCGCTCAGATATCTAAAATGGG
* * *
85918958 TTTCACCGTTCAGATCTCTCAAATG
1 TTTCACCGCTCAGATATCTAAAATG
85918983 CGTTGGTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (27 bp):
TTTCACCGCTCAGATATCTAAAATGGG
Found at i:85924323 original size:19 final size:18
Alignment explanation
Indices: 85924299--85924341 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
85924289 TTCAAAACAA
85924299 TCATTT-ATCAAATATCAT
1 TCATTTAAT-AAATATCAT
85924317 CTCATTTCAATAAATATCAT
1 -TCATTT-AATAAATATCAT
85924337 TCATT
1 TCATT
85924342 CACATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 9 0.41
21 2 0.09
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (18 bp):
TCATTTAATAAATATCAT
Found at i:85925400 original size:11 final size:11
Alignment explanation
Indices: 85925384--85925413 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
85925374 CCGGCCGTAT
85925384 TTATTTTTATA
1 TTATTTTTATA
85925395 TTA-TTTTATA
1 TTATTTTTATA
85925405 TTATTTTTA
1 TTATTTTTA
85925414 AATATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:85927381 original size:42 final size:44
Alignment explanation
Indices: 85927275--85927381 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 44
85927265 ATATGTTCTA
* * * *
85927275 CGTGTAAGACCACGTCTGAGACATTTGCATCAATTTCTATTTTG
1 CGTGTAAGACCATGTCTGGGACATTGGCATCAATATCTATTTTG
* *
85927319 CGTGTAAGACCATGTTTGGGACATTGGCATC-GTATCTGA-TTT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCAATATCT-ATTTTG
*
85927361 CGTGTAAGACCTTGTCTGGGA
1 CGTGTAAGACCATGTCTGGGA
85927382 TAGTGGTATC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 19 0.35
43 7 0.13
44 28 0.52
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCAATATCTATTTTG
Found at i:85928693 original size:13 final size:13
Alignment explanation
Indices: 85928675--85928703 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85928665 CACACGGGCA
85928675 TGTCTTGTGGCCG
1 TGTCTTGTGGCCG
85928688 TGTCTTGTGGCCG
1 TGTCTTGTGGCCG
85928701 TGT
1 TGT
85928704 GGATAAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.21, G:0.38, T:0.41
Consensus pattern (13 bp):
TGTCTTGTGGCCG
Found at i:85929517 original size:45 final size:45
Alignment explanation
Indices: 85929448--85929558 Score: 132
Period size: 45 Copynumber: 2.4 Consensus size: 45
85929438 AGCTCCTCCT
* * *
85929448 GAGCTGATGAACAATAAACTCTATCAAGCTGAACAATAAACTCGTAC
1 GAGCTGA--AACAGTAAGCTCTATCAAGCTGAACAATAAACTCATAC
* * * *
85929495 GAGCTGAAACGGTAAGCTCTATCAAGCTGAACAGTAAGCTTATAC
1 GAGCTGAAACAGTAAGCTCTATCAAGCTGAACAATAAACTCATAC
*
85929540 GAGCTGAAATAGTAAGCTC
1 GAGCTGAAACAGTAAGCTC
85929559 CAATGAGCTG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 48 0.87
47 7 0.13
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (45 bp):
GAGCTGAAACAGTAAGCTCTATCAAGCTGAACAATAAACTCATAC
Found at i:85929534 original size:22 final size:22
Alignment explanation
Indices: 85929455--85929558 Score: 86
Period size: 22 Copynumber: 4.6 Consensus size: 22
85929445 CCTGAGCTGA
* *
85929455 TGAACAATAAACTCTATCAAGC
1 TGAACAGTAAGCTCTATCAAGC
* * *
85929477 TGAACAATAAACTCGTA-CGAGC
1 TGAACAGTAAGCTC-TATCAAGC
*
85929499 TGAAACGGTAAGCTCTATCAAGC
1 TG-AACAGTAAGCTCTATCAAGC
*
85929522 TGAACAGTAAGCT-TATACGAGC
1 TGAACAGTAAGCTCTAT-CAAGC
*
85929544 TGAAATAGTAAGCTC
1 TG-AACAGTAAGCTC
85929559 CAATGAGCTG
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.04
22 38 0.56
23 27 0.40
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCAAGC
Found at i:85929556 original size:23 final size:24
Alignment explanation
Indices: 85929492--85929617 Score: 102
Period size: 23 Copynumber: 5.3 Consensus size: 24
85929482 AATAAACTCG
**
85929492 TACGAGCTGAAACGGTAAGCTCTA
1 TACGAGCTGAAATAGTAAGCTCTA
* *
85929516 T-CAAGCTG-AACAGTAAGCT-TA
1 TACGAGCTGAAATAGTAAGCTCTA
*
85929537 TACGAGCTGAAATAGTAAGCTCCA
1 TACGAGCTGAAATAGTAAGCTCTA
*
85929561 -ATGAGCTGAAAATAGTAAGCTCT-
1 TACGAGCTG-AAATAGTAAGCTCTA
* *
85929584 TACGAGTTGATATATCGGTAAGCTC-A
1 TACGAGCTGA-A-AT-AGTAAGCTCTA
85929610 TACGAGCT
1 TACGAGCT
85929618 ATGGTGAGTC
Statistics
Matches: 82, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
21 3 0.04
22 16 0.20
23 24 0.29
24 22 0.27
25 2 0.02
26 15 0.18
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (24 bp):
TACGAGCTGAAATAGTAAGCTCTA
Found at i:85929568 original size:45 final size:45
Alignment explanation
Indices: 85929470--85929574 Score: 115
Period size: 45 Copynumber: 2.4 Consensus size: 45
85929460 AATAAACTCT
* * *
85929470 ATCAAGCTGAACAATAAACTCGTACGAGCTGAAACGGTAAGCTCT
1 ATCAAGCTGAACAATAAACTCATACGAGCTGAAACAGTAAGCTCA
* * * *
85929515 ATCAAGCTGAACAGTAAGCTTATACGAGCTGAAATAGTAAGCTCCA
1 ATCAAGCTGAACAATAAACTCATACGAGCTGAAACAGTAAGCT-CA
*
85929561 AT-GAGCTGAA-AATA
1 ATCAAGCTGAACAATA
85929575 GTAAGCTCTT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
44 3 0.06
45 44 0.88
46 3 0.06
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (45 bp):
ATCAAGCTGAACAATAAACTCATACGAGCTGAAACAGTAAGCTCA
Found at i:85933532 original size:23 final size:24
Alignment explanation
Indices: 85933498--85933542 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
85933488 TTTTGAAATC
*
85933498 TAAAAACTAAAAT-AATAAATTTT
1 TAAAAACTAAAATCAAGAAATTTT
85933521 TAAAAA-TAAAAATCAAGAAATT
1 TAAAAACT-AAAATCAAGAAATT
85933543 ACTTTCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 1 0.05
23 11 0.58
24 7 0.37
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
TAAAAACTAAAATCAAGAAATTTT
Found at i:85934542 original size:88 final size:88
Alignment explanation
Indices: 85934393--85934568 Score: 334
Period size: 88 Copynumber: 2.0 Consensus size: 88
85934383 AAGGCATCCA
85934393 ACTTTTTGACCAAATGACAGTTCCTACAATATAGTAGGAAAAATATTATTTAGTAGAAAGTAATT
1 ACTTTTTGACCAAATGACAGTTCCTACAATATAGTAGGAAAAATATTATTTAGTAGAAAGTAATT
85934458 AATATTTGACACAATTAAAAAAT
66 AATATTTGACACAATTAAAAAAT
* *
85934481 ACTTTTTGACCGAATGACAGTTCCTACAATATAGTAGGAAAAATATTATTTAGTGGAAAGTAATT
1 ACTTTTTGACCAAATGACAGTTCCTACAATATAGTAGGAAAAATATTATTTAGTAGAAAGTAATT
85934546 AATATTTGACACAATTAAAAAAT
66 AATATTTGACACAATTAAAAAAT
85934569 TCAAACTACC
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.33
Consensus pattern (88 bp):
ACTTTTTGACCAAATGACAGTTCCTACAATATAGTAGGAAAAATATTATTTAGTAGAAAGTAATT
AATATTTGACACAATTAAAAAAT
Found at i:85935218 original size:18 final size:18
Alignment explanation
Indices: 85935192--85935234 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
85935182 TGCCAGGTGC
*
85935192 GTATTCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
85935210 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
85935228 GTTTCCT
1 GTATCCT
85935235 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.07, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:85938965 original size:126 final size:126
Alignment explanation
Indices: 85938740--85938994 Score: 411
Period size: 126 Copynumber: 2.0 Consensus size: 126
85938730 TTATAGCCTC
* ** *
85938740 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTACTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAACACCCACGTGGGAGCTTCTTTCAGAAATTTTACTA
* * *
85938805 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
66 ACAGTGCATCCTACTTGAAGCATTTTCGACACTATTTGTCCAGAAACATCTACTCAAAATT
* *
85938866 ATTTTTCTACGAACTACTGTAGCAAAAGAACACCCACGTGGGAGCTTCTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAACACCCACGTGGGAGCTTCTTTCAGAAATTTTACTA
* *
85938931 ACAGTGCATCCTATTTGAAGCATTTTTGACACTATTTGTCCAGAAACATCTACTCAAAATT
66 ACAGTGCATCCTACTTGAAGCATTTTCGACACTATTTGTCCAGAAACATCTACTCAAAATT
85938992 ATT
1 ATT
85938995 CTTGCAGAAA
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 118 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAACACCCACGTGGGAGCTTCTTTCAGAAATTTTACTA
ACAGTGCATCCTACTTGAAGCATTTTCGACACTATTTGTCCAGAAACATCTACTCAAAATT
Found at i:85939558 original size:19 final size:19
Alignment explanation
Indices: 85939534--85939595 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
85939524 ACCATTATGT
85939534 ATCAATTTACCCTAAATTA
1 ATCAATTTACCCTAAATTA
*
85939553 ATCAATTAACCCTAAATTTA
1 ATCAATTTACCCTAAA-TTA
*
85939573 ATCAA--T-CCCTAATTTA
1 ATCAATTTACCCTAAATTA
85939589 ATCAATT
1 ATCAATT
85939596 AACTCTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.22
17 6 0.16
19 15 0.41
20 8 0.22
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
ATCAATTTACCCTAAATTA
Found at i:85939588 original size:16 final size:17
Alignment explanation
Indices: 85939541--85939594 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 17
85939531 TGTATCAATT
*
85939541 TACCCTAAATTAATCAA
1 TACCCTAATTTAATCAA
85939558 TTAACCCTAAATTTAATCAA
1 -T-ACCCT-AATTTAATCAA
85939578 T-CCCTAATTTAATCAA
1 TACCCTAATTTAATCAA
85939594 T
1 T
85939595 TAACTCTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 12 0.36
17 4 0.12
18 1 0.03
19 6 0.18
20 10 0.30
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (17 bp):
TACCCTAATTTAATCAA
Found at i:85939740 original size:13 final size:14
Alignment explanation
Indices: 85939704--85939731 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
85939694 CTAAACCCTA
85939704 AAAAACCCTAACCT
1 AAAAACCCTAACCT
85939718 AAAAACCCTAACCT
1 AAAAACCCTAACCT
85939732 TAAATCCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAACCCTAACCT
Found at i:85939751 original size:22 final size:22
Alignment explanation
Indices: 85939707--85939758 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
85939697 AACCCTAAAA
85939707 AACCCT-AA-CCTAAAAACCCT
1 AACCCTAAATCCTAAAAACCCT
* **
85939727 AACCTTAAATCCTAAAAACTTT
1 AACCCTAAATCCTAAAAACCCT
85939749 AACCCTAAAT
1 AACCCTAAAT
85939759 TAGTTAAACC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 5 0.19
21 2 0.08
22 19 0.73
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (22 bp):
AACCCTAAATCCTAAAAACCCT
Found at i:85940199 original size:29 final size:30
Alignment explanation
Indices: 85940167--85940225 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
85940157 TATGGTTTAA
85940167 TGTGCAATTATATACATG-AATTTTGATTT
1 TGTGCAATTATATACATGAAATTTTGATTT
* * * *
85940196 TGTGTAATTTTATACTTGAAATTTTTATTT
1 TGTGCAATTATATACATGAAATTTTGATTT
85940226 GATCCAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54
Consensus pattern (30 bp):
TGTGCAATTATATACATGAAATTTTGATTT
Found at i:85945990 original size:32 final size:32
Alignment explanation
Indices: 85945951--85946011 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
85945941 TTCGATATTG
* *
85945951 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCCTGTTAGATATTGAATTT
*
85945983 ATTATGTTTCAAGCCTGTTGGATATTGAA
1 ATTATGTTTCAAGCCTGTTAGATATTGAA
85946012 ATGATTAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.48
Consensus pattern (32 bp):
ATTATGTTTCAAGCCTGTTAGATATTGAATTT
Found at i:85947807 original size:21 final size:22
Alignment explanation
Indices: 85947783--85947830 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
85947773 CTTTTTACGA
*
85947783 TTTTTATAAAAG-TTTACAGTT
1 TTTTTATAAAAGTTTTACAATT
85947804 TTTTTATAAAAGTTTTACAATT
1 TTTTTATAAAAGTTTTACAATT
85947826 TTTTT
1 TTTTT
85947831 CTAATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.58
Consensus pattern (22 bp):
TTTTTATAAAAGTTTTACAATT
Found at i:85947838 original size:19 final size:18
Alignment explanation
Indices: 85947816--85947876 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 18
85947806 TTTATAAAAG
85947816 TTTTACAATTTTTTTCTAA
1 TTTTACAATTTTTTT-TAA
*
85947835 TTTTTA-ATTTTTTATTTAAA
1 -TTTTACAATTTTT-TTT-AA
* *
85947855 TTTAACAATTTTTATTAA
1 TTTTACAATTTTTTTTAA
85947873 TTTT
1 TTTT
85947877 TATTTTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
18 5 0.15
19 13 0.39
20 15 0.45
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTACAATTTTTTTTAA
Found at i:85947839 original size:20 final size:19
Alignment explanation
Indices: 85947816--85947878 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
85947806 TTTATAAAAG
85947816 TTTTACAATTTTTTTCTAAT
1 TTTTACAATTTTTTT-TAAT
* *
85947836 TTTTA-ATTTTTTATTTAAA
1 TTTTACAATTTTT-TTTAAT
* *
85947855 TTTAACAATTTTTATTAAT
1 TTTTACAATTTTTTTTAAT
85947874 TTTTA
1 TTTTA
85947879 TTTTTTATCA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
19 21 0.62
20 13 0.38
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTACAATTTTTTTTAAT
Found at i:85947863 original size:39 final size:38
Alignment explanation
Indices: 85947803--85947886 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 38
85947793 AGTTTACAGT
* *
85947803 TTTTTTA-TAAAAGTTTTACAATTTTTTTCTAATTTTTAA
1 TTTTTTATTAAAAGTTTAACAATTTTTAT-TAATTTTT-A
*
85947842 TTTTTTATTTAAA-TTTAACAATTTTTATTAATTTTTA
1 TTTTTTATTAAAAGTTTAACAATTTTTATTAATTTTTA
85947879 TTTTTTAT
1 TTTTTTAT
85947887 CATTTTTTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
37 9 0.22
38 8 0.20
39 20 0.49
40 4 0.10
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (38 bp):
TTTTTTATTAAAAGTTTAACAATTTTTATTAATTTTTA
Found at i:85955107 original size:15 final size:16
Alignment explanation
Indices: 85955081--85955113 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
85955071 TTATTTCTAA
85955081 AAATATTAATTAATTT
1 AAATATTAATTAATTT
85955097 AAATA-TAATTAATTT
1 AAATATTAATTAATTT
85955112 AA
1 AA
85955114 TTAAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATATTAATTAATTT
Found at i:85957506 original size:22 final size:21
Alignment explanation
Indices: 85957477--85957519 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
85957467 ATTATTTTAT
85957477 AATTTTAA-AATTTTTAAAAAA
1 AATTTTAATAA-TTTTAAAAAA
*
85957498 AATTATTAATCATTTTAAAAAA
1 AATT-TTAATAATTTTAAAAAA
85957520 TTAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 14 0.74
23 1 0.05
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
AATTTTAATAATTTTAAAAAA
Found at i:85965314 original size:38 final size:38
Alignment explanation
Indices: 85965263--85965542 Score: 389
Period size: 38 Copynumber: 7.3 Consensus size: 38
85965253 ATATTCGATG
85965263 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
85965301 TATATCCGAGTTAAATCCCGCAGGCTTCGTGCTAGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
85965339 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
85965379 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
85965417 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTAGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
85965457 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * * *
85965495 TATATCCGAGATAAATCCCGCAGGCCTAGTGCCGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
85965533 TATATTCGGG
1 TATATCCGGG
85965543 CCTTCGTGCC
Statistics
Matches: 213, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
38 135 0.63
39 20 0.09
40 58 0.27
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:85965366 original size:78 final size:76
Alignment explanation
Indices: 85965263--85965519 Score: 397
Period size: 78 Copynumber: 3.3 Consensus size: 76
85965253 ATATTCGATG
* ** *
85965263 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAAACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTT
*
85965328 CGTGCTAGTAT
66 CGTGCTGGTAT
85965339 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
1 TATATCCGGG-TTAAA-ACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
85965404 TTCGTGCTGGTAT
64 TTCGTGCTGGTAT
*
85965417 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTAGTAAAATATCCGGGTTAAATCCCGCAGGC
1 TATATCCGGG-TTAAA-ACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
85965482 TTCGTGCTGGTAT
64 TTCGTGCTGGTAT
* * *
85965495 TATATCCGAGATAAATCCCGCAGGC
1 TATATCCGGGTTAAAACCCGCAGGC
85965520 CTAGTGCCGG
Statistics
Matches: 170, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
76 19 0.11
77 9 0.05
78 142 0.84
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (76 bp):
TATATCCGGGTTAAAACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTT
CGTGCTGGTAT
Found at i:85965477 original size:116 final size:117
Alignment explanation
Indices: 85965264--85965543 Score: 413
Period size: 116 Copynumber: 2.4 Consensus size: 117
85965254 TATTCGATGT
* *
85965264 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGAG-TTAAATCCCGCAGGCTT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAACCCGCAGGCTT
**
85965328 CGTGCTAGTATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAA
66 CGTGCTAGTAAAATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAA
85965380 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACCCGCAGGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAA-ACCCGCAGGCT
* **
85965445 TCGTGCTAGTAAAATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATT
65 TCGTGCTAGTAAAATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAA
* * * * * *
85965496 ATATCCGAGATAAATCCCGCAGGCCTAGTGCCGGTATTATATTCGGGC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGC
85965544 CTTCGTGCCT
Statistics
Matches: 149, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
116 109 0.73
117 10 0.07
118 30 0.20
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (117 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAACCCGCAGGCTT
CGTGCTAGTAAAATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAA
Found at i:85968450 original size:22 final size:22
Alignment explanation
Indices: 85968425--85968467 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
85968415 GTCCTTAACT
85968425 TGTTTTGAT-TTATTTATTTTTC
1 TGTTTT-ATATTATTTATTTTTC
85968447 TGTTTTATCATTATTTATTTT
1 TGTTTTAT-ATTATTTATTTT
85968468 AAATCTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 2 0.11
22 6 0.32
23 11 0.58
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.72
Consensus pattern (22 bp):
TGTTTTATATTATTTATTTTTC
Done.