Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 266 of 320
Found at i:86277696 original size:93 final size:95
Alignment explanation
Indices: 86277533--86277708 Score: 275
Period size: 93 Copynumber: 1.9 Consensus size: 95
86277523 CGCCCATAAG
* *
86277533 CGAACTCGGACTCAACTCAACGAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAA
1 CGAACTCGGACTCAACTCAAC-AAC-AGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAA
86277598 CTCAACGAGTTCGAATGCCTAGTTACATCTCA
64 CTCAACGAGTTCGAATGCCTAGTTACATCTCA
* *
86277630 CGAACTCGGACTCAACTCAAC-A-AGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACT
1 CGAACTCGGACTCAACTCAACAACAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACT
*
86277693 CAACGAGTTCGGATGC
66 CAACGAGTTCGAATGC
86277709 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
93 52 0.70
95 1 0.01
97 21 0.28
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (95 bp):
CGAACTCGGACTCAACTCAACAACAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACT
CAACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:86277702 original size:46 final size:46
Alignment explanation
Indices: 86277526--86277705 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 46
86277516 TGTAACCCGC
* * *
86277526 CCATAAGCGAACTCGGACTCAACTCAACGAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACT---C-AACGAGTTCGGACATTCGCAT
* * *
86277576 CCACAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* * *
86277622 ACATCTCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
86277669 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86277706 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 22
0.73 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 39 0.37
47 29 0.28
48 3 0.03
49 4 0.04
50 23 0.22
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86277724 original size:46 final size:44
Alignment explanation
Indices: 86277581--86277724 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
86277571 CGCATCCACA
*
86277581 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
86277628 CA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
86277674 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
86277720 AGTGA
1 AGTGA
86277725 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:86289474 original size:93 final size:93
Alignment explanation
Indices: 86289361--86289532 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86289351 CGCCCATAAG
* *
86289361 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86289426 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
86289454 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86289519 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86289533 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86289529 original size:46 final size:46
Alignment explanation
Indices: 86289354--86289529 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
86289344 TGTAACCCGC
* * *
86289354 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
86289400 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
86289450 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
86289493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86289530 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86317905 original size:10 final size:10
Alignment explanation
Indices: 86317892--86317924 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
86317882 TACTTTTAAA
86317892 TATTAAAAAT
1 TATTAAAAAT
86317902 TATTAAAAAT
1 TATTAAAAAT
86317912 T-TATAAAAAT
1 TAT-TAAAAAT
86317922 TAT
1 TAT
86317925 AATTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 1 0.05
10 19 0.90
11 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TATTAAAAAT
Found at i:86318087 original size:25 final size:27
Alignment explanation
Indices: 86318050--86318106 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
86318040 ATTTTAAATT
86318050 TTTTATAACTTTTTTA-TAA-TTAT-AA
1 TTTTATAA-TTTTTTAGTAATTTATAAA
*
86318075 TTTTATGATTTTTTAGTAATTTATAAA
1 TTTTATAATTTTTTAGTAATTTATAAA
86318102 TTTTA
1 TTTTA
86318107 AAAGGGCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.25
25 10 0.36
26 4 0.14
27 7 0.25
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTATAATTTTTTAGTAATTTATAAA
Found at i:86325481 original size:40 final size:41
Alignment explanation
Indices: 86325418--86325511 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
86325408 CTATGTTCGT
**
86325418 CACTAAGTGTGCG-GTTCGAAATAGCTTTGGCTACA-AATGG
1 CACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAA-GG
* * *
86325458 CACTAAGTGTGCGAGTT-GGAATAGCTTCAGCTATATGAGG
1 CACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAAGG
86325498 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
86325512 TACCGAGATA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (41 bp):
CACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAAGG
Found at i:86338366 original size:5 final size:5
Alignment explanation
Indices: 86338351--86338382 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
86338341 TAACCTTACT
86338351 ATAATA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAA-A ATAAA ATAAA ATAAA ATAAA ATAAA A
86338383 AAGGAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:86339858 original size:13 final size:13
Alignment explanation
Indices: 86339835--86339873 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
86339825 AATTTATGTT
*
86339835 TAAAGAATAAAGAA
1 TAAA-AATAAAAAA
86339849 TAAAAATAAAAAA
1 TAAAAATAAAAAA
86339862 TAAAAATAAAAA
1 TAAAAATAAAAA
86339874 CTAAGAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:86339866 original size:5 final size:6
Alignment explanation
Indices: 86339835--86339873 Score: 51
Period size: 7 Copynumber: 6.0 Consensus size: 6
86339825 AATTTATGTT
86339835 TAAAGAA TAAAGAA TAAAAA TAAAAAA TAAAAA TAAAAA
1 TAAA-AA TAAA-AA TAAAAA T-AAAAA TAAAAA TAAAAA
86339874 CTAAGAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 14 0.45
7 17 0.55
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (6 bp):
TAAAAA
Found at i:86340879 original size:3 final size:3
Alignment explanation
Indices: 86340871--86340896 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
86340861 TGCTTGCGGC
86340871 GTT GTT GTT GTT GTT GTT GTT GTT GT
1 GTT GTT GTT GTT GTT GTT GTT GTT GT
86340897 CGGGAGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (3 bp):
GTT
Found at i:86343859 original size:3 final size:3
Alignment explanation
Indices: 86343851--86343876 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
86343841 ATTAATTTCT
86343851 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
86343877 TATCTGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:86345270 original size:20 final size:19
Alignment explanation
Indices: 86345237--86345277 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
86345227 CAATTTATAT
*
86345237 TTTATAATAATTAATTTTA
1 TTTATAATAATTAAATTTA
*
86345256 TTTATAATTAGTTAAATTTA
1 TTTATAA-TAATTAAATTTA
86345276 TT
1 TT
86345278 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTATAATAATTAAATTTA
Found at i:86348854 original size:31 final size:30
Alignment explanation
Indices: 86348816--86348889 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
86348806 ATTTAAAGGT
86348816 AGAGTGACTAAAATTAACAACTTATCTAAC
1 AGAGTGACTAAAATTAACAACTTATCTAAC
* *
86348846 AAGAGTGACTAAAATTGACAATTTATCTAAC
1 -AGAGTGACTAAAATTAACAACTTATCTAAC
*
86348877 GGAAGTGACTAAA
1 AG-AGTGACTAAA
86348890 TAACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 38 0.97
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.26
Consensus pattern (30 bp):
AGAGTGACTAAAATTAACAACTTATCTAAC
Found at i:86350547 original size:41 final size:40
Alignment explanation
Indices: 86350489--86350686 Score: 215
Period size: 41 Copynumber: 4.8 Consensus size: 40
86350479 TTAAACAGAT
* * * *
86350489 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
86350531 -CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
86350571 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTGAAATGTA
86350612 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
86350651 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTG
86350687 TATTATATTC
Statistics
Matches: 138, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 10 0.07
41 122 0.88
42 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TCACCGGCATTAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:86350626 original size:82 final size:80
Alignment explanation
Indices: 86350489--86350686 Score: 238
Period size: 82 Copynumber: 2.4 Consensus size: 80
86350479 TTAAACAGAT
** * * *
86350489 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTGATTCAGTACACCGGCACTTAGCCTGCTAGAC
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAT-AGTACACCGGCACTTAGCCTGCTAGAC
*
86350554 ATATAGTCTGAAATGTA-
65 ATAAAGTCTG-AAT-TAC
*
86350571 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAA-ATGTATCACCGGCATTTAGCCTGCTAGA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATA-GTA-CACCGGCACTTAGCCTGCTAGA
*
86350635 CTTAAAGTCTGAATTAC
64 CATAAAGTCTGAATTAC
* *
86350652 TTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 -TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
86350687 TATTATATTC
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
80 3 0.03
81 6 0.06
82 93 0.91
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (80 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATAGTACACCGGCACTTAGCCTGCTAGACA
TAAAGTCTGAATTAC
Found at i:86358138 original size:41 final size:40
Alignment explanation
Indices: 86358080--86358277 Score: 215
Period size: 41 Copynumber: 4.8 Consensus size: 40
86358070 TTAAACAGAT
* * * *
86358080 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
86358122 -CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
86358162 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTGAAATGTA
86358203 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
86358242 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTG
86358278 TATTATATTC
Statistics
Matches: 138, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 10 0.07
41 122 0.88
42 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TCACCGGCATTAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:86358217 original size:82 final size:80
Alignment explanation
Indices: 86358080--86358277 Score: 238
Period size: 82 Copynumber: 2.4 Consensus size: 80
86358070 TTAAACAGAT
** * * *
86358080 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTGATTCAGTACACCGGCACTTAGCCTGCTAGAC
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAT-AGTACACCGGCACTTAGCCTGCTAGAC
*
86358145 ATATAGTCTGAAATGTA-
65 ATAAAGTCTG-AAT-TAC
*
86358162 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAA-ATGTATCACCGGCATTTAGCCTGCTAGA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATA-GTA-CACCGGCACTTAGCCTGCTAGA
*
86358226 CTTAAAGTCTGAATTAC
64 CATAAAGTCTGAATTAC
* *
86358243 TTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 -TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
86358278 TATTATATTC
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
80 3 0.03
81 6 0.06
82 93 0.91
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (80 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATAGTACACCGGCACTTAGCCTGCTAGACA
TAAAGTCTGAATTAC
Found at i:86362436 original size:97 final size:98
Alignment explanation
Indices: 86362269--86362447 Score: 229
Period size: 97 Copynumber: 1.8 Consensus size: 98
86362259 AATATAACTT
* **
86362269 ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTGACCGAGTTGGTGTCAAGCTGACTTCTGA
1 ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTAACCGAGTTGGTGTCAAGCTGAAATCTGA
86362334 GACTAACTC-ATCACACTCAAAAAATAATATAG
66 GACTAACTCAATCACACTCAAAAAATAATATAG
* * * ** *
86362366 ATTTAAAATATGTAATGTTATTTTAGT-ATTTTCCTTAACTGAGTTGGTGTCCTG-TTAAATCGT
1 ATTTAAAATATGTAAAGTTAATTTAGTGATTTT-CTTAACCGAGTTGGTGTCAAGCTGAAATC-T
*
86362429 GATACTAACTCAATCACAC
64 GAGACTAACTCAATCACAC
86362448 ACTTAAATAA
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
96 9 0.13
97 53 0.77
98 7 0.10
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (98 bp):
ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTAACCGAGTTGGTGTCAAGCTGAAATCTGA
GACTAACTCAATCACACTCAAAAAATAATATAG
Found at i:86362456 original size:97 final size:97
Alignment explanation
Indices: 86362269--86362468 Score: 224
Period size: 97 Copynumber: 2.0 Consensus size: 97
86362259 AATATAACTT
* **
86362269 ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTGACCGAGTTGGTGTCAAGCTGACTTCTGA
1 ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTAACCGAGTTGGTGTCAAGCTGAAATCTGA
*
86362334 GACTAACTCATCACACTCAAAAAATAATATAG
66 GACTAACTCATCACACACAAAAAATAATATAG
* * * ** *
86362366 ATTTAAAATATGTAATGTTATTTTAGT-ATTTTCCTTAACTGAGTTGGTGTCCTG-TTAAATCGT
1 ATTTAAAATATGTAAAGTTAATTTAGTGATTTT-CTTAACCGAGTTGGTGTCAAGCTGAAATC-T
* * *
86362429 GATACTAACTCAATCACACACTTAAATAATAGTATAG
64 GAGACTAACTC-ATCACACAC--AAAAAATAATATAG
86362466 ATT
1 ATT
86362469 ATGTGATTTG
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
96 9 0.11
97 53 0.62
98 8 0.09
100 15 0.18
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (97 bp):
ATTTAAAATATGTAAAGTTAATTTAGTGATTTTCTTAACCGAGTTGGTGTCAAGCTGAAATCTGA
GACTAACTCATCACACACAAAAAATAATATAG
Found at i:86369753 original size:11 final size:11
Alignment explanation
Indices: 86369737--86369764 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
86369727 AAAGGTCTTT
86369737 ACAGGGTTGTA
1 ACAGGGTTGTA
86369748 ACAGGGTTGTA
1 ACAGGGTTGTA
86369759 ACAGGG
1 ACAGGG
86369765 CTTGGGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.39, T:0.21
Consensus pattern (11 bp):
ACAGGGTTGTA
Found at i:86370963 original size:6 final size:6
Alignment explanation
Indices: 86370949--86371048 Score: 85
Period size: 6 Copynumber: 16.3 Consensus size: 6
86370939 ATAAGAAAAT
* * * * * * *
86370949 AACACA AACATA AACAGA AAAATA AAAATA AAAATA AAAATAA AAGATA
1 AACATA AACATA AACATA AACATA AACATA AACATA AACAT-A AACATA
* *
86370998 AAAATAA AAGATA AA-AGTA AACATA AACATA AACATA AACATA AACATA
1 AACAT-A AACATA AACA-TA AACATA AACATA AACATA AACATA AACATA
86371047 AA
1 AA
86371049 AAAAAATCAG
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
5 1 0.01
6 71 0.86
7 11 0.13
ACGTcount: A:0.73, C:0.09, G:0.04, T:0.14
Consensus pattern (6 bp):
AACATA
Found at i:86370973 original size:12 final size:12
Alignment explanation
Indices: 86370954--86371050 Score: 95
Period size: 12 Copynumber: 7.9 Consensus size: 12
86370944 AAAATAACAC
* *
86370954 AAACATAAACAG
1 AAACATAAAAAT
*
86370966 AAAAATAAAAAT
1 AAACATAAAAAT
*
86370978 AAAAATAAAAAT
1 AAACATAAAAAT
*
86370990 AAAAGATAAAAAT
1 -AAACATAAAAAT
* *
86371003 AAAAGATAAAAGT
1 -AAACATAAAAAT
*
86371016 AAACATAAACAT
1 AAACATAAAAAT
*
86371028 AAACATAAACAT
1 AAACATAAAAAT
86371040 AAACATAAAAA
1 AAACATAAAAA
86371051 AAAATCAGAC
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
12 52 0.69
13 23 0.31
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.14
Consensus pattern (12 bp):
AAACATAAAAAT
Found at i:86370987 original size:18 final size:18
Alignment explanation
Indices: 86370966--86371054 Score: 99
Period size: 18 Copynumber: 4.9 Consensus size: 18
86370956 ACATAAACAG
86370966 AAAAATAAAAATAAAAAT
1 AAAAATAAAAATAAAAAT
86370984 AAAAATAAAAGATAAAAAT
1 AAAAATAAAA-ATAAAAAT
* *
86371003 AAAAGATAAAAGTAAACAT
1 AAAA-ATAAAAATAAAAAT
* * *
86371022 AAACATAAACATAAACAT
1 AAAAATAAAAATAAAAAT
*
86371040 AAACATAAAAA-AAAA
1 AAAAATAAAAATAAAA
86371055 TCAGACTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
17 3 0.05
18 32 0.52
19 21 0.34
20 6 0.10
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (18 bp):
AAAAATAAAAATAAAAAT
Found at i:86370988 original size:13 final size:13
Alignment explanation
Indices: 86370966--86371018 Score: 72
Period size: 13 Copynumber: 4.2 Consensus size: 13
86370956 ACATAAACAG
86370966 AAAAATAAAAAT-
1 AAAAATAAAAATA
86370978 AAAAATAAAAATA
1 AAAAATAAAAATA
*
86370991 AAAGATAAAAATA
1 AAAAATAAAAATA
* *
86371004 AAAGATAAAAGTA
1 AAAAATAAAAATA
86371017 AA
1 AA
86371019 CATAAACATA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 12 0.32
13 26 0.68
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:86376691 original size:25 final size:25
Alignment explanation
Indices: 86376648--86376696 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
86376638 TAAATAGAAA
* *
86376648 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAATAAAT-AAATAC
86376674 ATTTAAAAACATAA-AAATAAATA
1 ATTTAAAAACATAATAAATAAATA
86376697 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 4 0.19
26 12 0.57
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (25 bp):
ATTTAAAAACATAATAAATAAATAC
Found at i:86376976 original size:32 final size:30
Alignment explanation
Indices: 86376931--86376990 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
86376921 AGTAGCAGCA
* *
86376931 AAACAGCACCAAAACAACATCAAAACAACACC
1 AAACAACAACAAAACAACA-CAAAA-AACACC
*
86376963 AAACAACAACAAAAGAACACAAAAAACA
1 AAACAACAACAAAACAACACAAAAAACA
86376991 ACATCACCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.16
31 5 0.20
32 16 0.64
ACGTcount: A:0.67, C:0.28, G:0.03, T:0.02
Consensus pattern (30 bp):
AAACAACAACAAAACAACACAAAAAACACC
Found at i:86376981 original size:11 final size:11
Alignment explanation
Indices: 86376929--86376993 Score: 64
Period size: 11 Copynumber: 6.2 Consensus size: 11
86376919 AAAGTAGCAG
* *
86376929 CAAAACAGCAC
1 CAAAACAACAA
*
86376940 CAAAACAACAT
1 CAAAACAACAA
86376951 CAAAACAAC-A
1 CAAAACAACAA
*
86376961 CCAAACAACAA
1 CAAAACAACAA
*
86376972 CAAAAGAAC-A
1 CAAAACAACAA
86376982 CAAAA-AACAA
1 CAAAACAACAA
86376992 CA
1 CA
86376994 TCACCAACAA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
9 3 0.07
10 17 0.37
11 26 0.57
ACGTcount: A:0.66, C:0.29, G:0.03, T:0.02
Consensus pattern (11 bp):
CAAAACAACAA
Found at i:86382589 original size:31 final size:30
Alignment explanation
Indices: 86382527--86382589 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
86382517 TATGTCGAAG
* *
86382527 AAAATTAAAAAAAAATAAAGCAACTAAAAC
1 AAAATTAAAAAAAAATAAAGAAAATAAAAC
86382557 AAAATTAAAAAGAAACATAAA-AAAATAAAAC
1 AAAATTAAAAA-AAA-ATAAAGAAAATAAAAC
86382588 AA
1 AA
86382590 CAATAGTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 11 0.38
31 13 0.45
32 5 0.17
ACGTcount: A:0.76, C:0.08, G:0.03, T:0.13
Consensus pattern (30 bp):
AAAATTAAAAAAAAATAAAGAAAATAAAAC
Found at i:86382737 original size:29 final size:27
Alignment explanation
Indices: 86382698--86382769 Score: 87
Period size: 25 Copynumber: 2.7 Consensus size: 27
86382688 TAAGTATAAG
*
86382698 AATAATAAATAAAATAAAAAGTTTAATA
1 AATAATAAATAAAATAAAAA-TATAATA
*
86382726 CAATAA-AAA-ATAA-AAAAATATAATA
1 -AATAATAAATAAAATAAAAATATAATA
86382751 AATAATAAATAAAATAAAA
1 AATAATAAATAAAATAAAA
86382770 TAAAAATAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
24 5 0.14
25 9 0.24
26 8 0.22
27 7 0.19
28 3 0.08
29 5 0.14
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (27 bp):
AATAATAAATAAAATAAAAATATAATA
Found at i:86382748 original size:10 final size:11
Alignment explanation
Indices: 86382722--86382777 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
86382712 TAAAAAGTTT
*
86382722 AATACAATAAA
1 AATATAATAAA
86382733 AA-ATAA-AAA
1 AATATAATAAA
86382742 AATATAATAAA
1 AATATAATAAA
86382753 TAATA-AAT-AA
1 -AATATAATAAA
*
86382763 AATAAAATAAA
1 AATATAATAAA
86382774 AATA
1 AATA
86382778 GGGTGATTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 9 0.23
10 12 0.31
11 14 0.36
12 4 0.10
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (11 bp):
AATATAATAAA
Found at i:86382750 original size:20 final size:21
Alignment explanation
Indices: 86382722--86382775 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
86382712 TAAAAAGTTT
*
86382722 AATACAATAAAAAATAAA-AA
1 AATAAAATAAAAAATAAATAA
* *
86382742 AATATAATAAATAATAAATAA
1 AATAAAATAAAAAATAAATAA
86382763 AATAAAATAAAAA
1 AATAAAATAAAAA
86382776 TAGGGTGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (21 bp):
AATAAAATAAAAAATAAATAA
Found at i:86382772 original size:24 final size:24
Alignment explanation
Indices: 86382698--86382777 Score: 83
Period size: 24 Copynumber: 3.2 Consensus size: 24
86382688 TAAGTATAAG
86382698 AATAATAAATAAAATAAAAAGTTTAATA
1 AATAATAAATAAAAT-AAAA---TAATA
*
86382726 CAATAAAAAATAAAA-AAATATAATA
1 -AATAATAAATAAAATAAA-ATAATA
86382751 AATAATAAATAAAATAAAATAA-A
1 AATAATAAATAAAATAAAATAATA
86382774 AATA
1 AATA
86382778 GGGTGATTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
23 5 0.11
24 17 0.36
25 8 0.17
27 3 0.06
28 1 0.02
29 13 0.28
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (24 bp):
AATAATAAATAAAATAAAATAATA
Found at i:86389157 original size:65 final size:64
Alignment explanation
Indices: 86389073--86389200 Score: 211
Period size: 65 Copynumber: 2.0 Consensus size: 64
86389063 TAAATCAACA
* *
86389073 ATATACAAACATTATAATACAGAATGCTGGAATCTACATTCGATACTTGAAGAAAAATAGGGTGT
1 ATATACAAACATTACAATACAGAATGCTGGAACCTACATTCGATACTT-AAGAAAAATAGGGTGT
* *
86389138 ATATACAAACATTACAATACAGAATGTTGGAACCTACATTCGATGCTTAAGAAAAATAGGGTG
1 ATATACAAACATTACAATACAGAATGCTGGAACCTACATTCGATACTTAAGAAAAATAGGGTG
86389201 CGTAAGTGGT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 15 0.25
65 44 0.75
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (64 bp):
ATATACAAACATTACAATACAGAATGCTGGAACCTACATTCGATACTTAAGAAAAATAGGGTGT
Found at i:86392335 original size:18 final size:18
Alignment explanation
Indices: 86392314--86392349 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86392304 GGTGAAAAAA
*
86392314 AATTATATTTAATTATTT
1 AATTATATTTAAATATTT
*
86392332 AATTATGTTTAAATATTT
1 AATTATATTTAAATATTT
86392350 TTATTTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
AATTATATTTAAATATTT
Found at i:86395719 original size:13 final size:15
Alignment explanation
Indices: 86395697--86395732 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
86395687 ACCAATTTGT
86395697 AACATATA-TTTTAA
1 AACATATATTTTTAA
86395711 AACAT-TATTTTTAA
1 AACATATATTTTTAA
86395725 AA-ATATAT
1 AACATATAT
86395733 AGTTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
AACATATATTTTTAA
Found at i:86396408 original size:20 final size:18
Alignment explanation
Indices: 86396385--86396421 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 18
86396375 AAAAATTATT
86396385 AAATTATTAAAAAAGAATAC
1 AAATTA-TAAAAAA-AATAC
86396405 AAATTATAAAAAAAATA
1 AAATTATAAAAAAAATA
86396422 TTTTTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (18 bp):
AAATTATAAAAAAAATAC
Found at i:86400697 original size:28 final size:28
Alignment explanation
Indices: 86400666--86400722 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
86400656 TTATCAACCC
86400666 TAAGTTATAAAACTCTTCCTATACCCCA
1 TAAGTTATAAAACTCTTCCTATACCCCA
* * *
86400694 TAAGTTATGAGACTTTTCCTATACCCCA
1 TAAGTTATAAAACTCTTCCTATACCCCA
86400722 T
1 T
86400723 TAATATGGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (28 bp):
TAAGTTATAAAACTCTTCCTATACCCCA
Found at i:86404841 original size:15 final size:15
Alignment explanation
Indices: 86404821--86404856 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
86404811 AGTGCTTGAA
86404821 GAAAGAATTTGAAAT
1 GAAAGAATTTGAAAT
86404836 GAAAGAATTTGAAAT
1 GAAAGAATTTGAAAT
86404851 GAAAGA
1 GAAAGA
86404857 CCTTGGAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (15 bp):
GAAAGAATTTGAAAT
Found at i:86406059 original size:28 final size:28
Alignment explanation
Indices: 86406019--86406081 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
86406009 GTCATTATCA
86406019 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
86406047 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
86406075 ACCCCAT
1 ACCCCAT
86406082 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:86406578 original size:21 final size:21
Alignment explanation
Indices: 86406551--86406605 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
86406541 ATAGCGGTGG
*
86406551 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
* * *
86406572 TGGTGAGATTGGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
86406593 CGGTGAGATTAGA
1 CGGTGAGATTAGA
86406606 AACAATGGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.07, G:0.35, T:0.31
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:86407339 original size:95 final size:95
Alignment explanation
Indices: 86407181--86407374 Score: 372
Period size: 95 Copynumber: 2.0 Consensus size: 95
86407171 AAATAACACT
86407181 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCAGTTGCTGTCG
1 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCAGTTGCTGTCG
86407246 TGTAGAAAAGAAGAGTAATCCCCATAAATA
66 TGTAGAAAAGAAGAGTAATCCCCATAAATA
86407276 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAA-CACGTTGCTGTC
1 CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCA-GTTGCTGTC
86407340 GTGTAGAAAAGAAGAGTAATCCCCATAAATA
65 GTGTAGAAAAGAAGAGTAATCCCCATAAATA
86407371 CAAT
1 CAAT
86407375 TTTATTATTT
Statistics
Matches: 98, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 2 0.02
95 96 0.98
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.18
Consensus pattern (95 bp):
CAATCTCACCACACCACAGAAAAACGGGCATCCAAAGGAGCCCTTAATCTAACCAGTTGCTGTCG
TGTAGAAAAGAAGAGTAATCCCCATAAATA
Found at i:86407736 original size:178 final size:179
Alignment explanation
Indices: 86407425--86407781 Score: 680
Period size: 178 Copynumber: 2.0 Consensus size: 179
86407415 CCATCGATTT
86407425 AAATATAATTTTTTTATTCTTATTTTAAATATTTATTTCTAAAAAGGAGGATGTGAAGGTAAATA
1 AAATATAATTTTTTTATTCTTATTTTAAATATTTATTTCTAAAAAGGAGGATGTGAAGGTAAATA
**
86407490 AATAAAGTATTTTTAATTTTATTGTGCAAAAATAAATTATATAATTTTAACTTTCAAACCTTATT
66 AATAAAGTATTTTTAATTTTATTGTGCAAAAATAAATTATATAATTTTAACTTTCAAACCAAATT
*
86407555 GATAAATGTGCCAACATCTCAGATGTATTTAAACGGTTAAAAAAGAAGA
131 GATAAATGTGCCAACATCTCAGATGCATTTAAACGGTTAAAAAAGAAGA
86407604 AAATATAA-TTTTTTATTCTTATTTTAAATATTTATTTCTAAAAAGGAGGATGTGAAGGTAAATA
1 AAATATAATTTTTTTATTCTTATTTTAAATATTTATTTCTAAAAAGGAGGATGTGAAGGTAAATA
86407668 AATAAAGTATTTTTAATTTTATTGTGCAAAAATAAATTATATAATTTTAACTTTCAAACCAAATT
66 AATAAAGTATTTTTAATTTTATTGTGCAAAAATAAATTATATAATTTTAACTTTCAAACCAAATT
86407733 GATAAATGTGCCAACATCTCAGATGCATTTAAACGGTTAAAAAAGAAGA
131 GATAAATGTGCCAACATCTCAGATGCATTTAAACGGTTAAAAAAGAAGA
86407782 GGCCGGGAGG
Statistics
Matches: 175, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
178 167 0.95
179 8 0.05
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.39
Consensus pattern (179 bp):
AAATATAATTTTTTTATTCTTATTTTAAATATTTATTTCTAAAAAGGAGGATGTGAAGGTAAATA
AATAAAGTATTTTTAATTTTATTGTGCAAAAATAAATTATATAATTTTAACTTTCAAACCAAATT
GATAAATGTGCCAACATCTCAGATGCATTTAAACGGTTAAAAAAGAAGA
Found at i:86409444 original size:31 final size:28
Alignment explanation
Indices: 86409405--86409475 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 28
86409395 TTAAATTAGT
86409405 AAATATAAAA-TTACATTTTAATTCTCTTAA
1 AAATATAAAATTTA-A-TTTAATT-TCTTAA
*
86409435 AAATAATAAAAATTTAATTTAATTTTTTAA
1 AAAT-AT-AAAATTTAATTTAATTTCTTAA
86409465 AAATTATAAAA
1 AAA-TATAAAA
86409476 ATATAAACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
29 4 0.11
30 14 0.39
31 10 0.28
32 5 0.14
33 3 0.08
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (28 bp):
AAATATAAAATTTAATTTAATTTCTTAA
Found at i:86435338 original size:33 final size:33
Alignment explanation
Indices: 86435300--86435366 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
86435290 AAATTAGGGG
86435300 TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
1 TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
* *
86435333 TTTTCTTATTTCCTTCTTTTTGGCAAAATTTCT
1 TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
86435366 T
1 T
86435367 CTCTTTCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.18, C:0.16, G:0.06, T:0.60
Consensus pattern (33 bp):
TTTTCTTATTTCCTTCTTTTTGGAAAAAATTCT
Found at i:86443633 original size:15 final size:15
Alignment explanation
Indices: 86443615--86443643 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
86443605 GACTCTATTT
86443615 TATTAAGATAATTAA
1 TATTAAGATAATTAA
86443630 TATTAAGATAATTA
1 TATTAAGATAATTA
86443644 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (15 bp):
TATTAAGATAATTAA
Found at i:86443695 original size:20 final size:20
Alignment explanation
Indices: 86443667--86443714 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
86443657 ATTTTAGGAT
*
86443667 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
86443686 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
86443706 TTTATCTTT
1 TTTATCTTT
86443715 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:86447388 original size:15 final size:14
Alignment explanation
Indices: 86447368--86447415 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
86447358 GGCAACCCAA
86447368 ATTTTATTTTTATTT
1 ATTTTATTTTTA-TT
*
86447383 ATTTTA-TCTTATT
1 ATTTTATTTTTATT
*
86447396 GTTTTATTATTTATT
1 ATTTTATT-TTTATT
86447411 ATTTT
1 ATTTT
86447416 CAGATATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 7 0.26
14 5 0.19
15 15 0.56
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (14 bp):
ATTTTATTTTTATT
Found at i:86450646 original size:30 final size:30
Alignment explanation
Indices: 86450612--86450669 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
86450602 TCCTTAACTC
86450612 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
86450642 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGCAAAATTACAATTTTGCCC
86450670 TTAGGCACGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:86452572 original size:27 final size:26
Alignment explanation
Indices: 86452512--86452573 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
86452502 ATAAGACTCT
86452512 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
86452538 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
86452566 ATTTTATT
1 ATTTTATT
86452574 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:86452588 original size:10 final size:10
Alignment explanation
Indices: 86452569--86452600 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
86452559 TTTTAGGATT
86452569 TTAT-TTTAA
1 TTATCTTTAA
86452578 TTATCTTTAA
1 TTATCTTTAA
86452588 TTATCTTTAA
1 TTATCTTTAA
86452598 TTA
1 TTA
86452601 ATTGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:86453887 original size:44 final size:42
Alignment explanation
Indices: 86453822--86453938 Score: 112
Period size: 42 Copynumber: 2.7 Consensus size: 42
86453812 ATATGTGTTA
* * * **
86453822 TCGTGTAAGACTACGTTTGGGACGTTGGCATAG-ACTTCTGTTT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATAGTA--TCTGACT
* *
86453865 TGCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGACT
1 T-CGTGTAAGACCATGTCTGGGACGTTGGCATAGTATCTGACT
*
86453908 TCGTGTAAGACCCTGTCTGGGACAG-TGGCAT
1 TCGTGTAAGACCATGTCTGGGAC-GTTGGCAT
86453939 CGATGTTTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.44
43 7 0.11
44 27 0.44
45 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATAGTATCTGACT
Found at i:86456889 original size:27 final size:26
Alignment explanation
Indices: 86456852--86456966 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
86456842 AGCATGGCTG
* *
86456852 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86456878 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
86456906 CGAGAACAAATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
86456933 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
86456960 CCAGAAC
1 CCAGAAC
86456967 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86456952 original size:54 final size:54
Alignment explanation
Indices: 86456852--86456966 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
86456842 AGCATGGCTG
* *
86456852 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * * *
86456906 CGAGAACAAATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGAACAAATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
86456960 CCAGAAC
1 CCAGAAC
86456967 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:86458590 original size:26 final size:26
Alignment explanation
Indices: 86458559--86458666 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
86458549 TGAAATGCCC
86458559 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
86458585 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
86458611 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
86458637 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
86458663 ATCA
1 ATCA
86458667 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 71 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:86460251 original size:17 final size:15
Alignment explanation
Indices: 86460221--86460259 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
86460211 TATGAACCCT
86460221 TCATTCTCTCATTCA
1 TCATTCTCTCATTCA
86460236 TCATCTCTCATCATTCA
1 TCAT-TCTC-TCATTCA
86460253 TCATTCT
1 TCATTCT
86460260 TTCTTCTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 7 0.32
17 11 0.50
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.46
Consensus pattern (15 bp):
TCATTCTCTCATTCA
Found at i:86462747 original size:6 final size:6
Alignment explanation
Indices: 86462736--86462786 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
86462726 TGTGTACCGC
* * *
86462736 TACTGT TACTGT TATTGC TACTGT TACTGT TACTGC TACTGT TACTGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT
86462784 TAC
1 TAC
86462787 CGATACAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:86462757 original size:18 final size:18
Alignment explanation
Indices: 86462734--86462786 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
86462724 TTTGTGTACC
*
86462734 GCTACTGTTACTGTTATT
1 GCTACTGTTACTGTTACT
86462752 GCTACTGTTACTGTTACT
1 GCTACTGTTACTGTTACT
86462770 GCTACTGTTACTGTTAC
1 GCTACTGTTACTGTTAC
86462787 CGATACAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (18 bp):
GCTACTGTTACTGTTACT
Found at i:86463006 original size:18 final size:18
Alignment explanation
Indices: 86462946--86463011 Score: 78
Period size: 18 Copynumber: 3.7 Consensus size: 18
86462936 TACTTAAAAA
*
86462946 AAATGATCATTACTGAAT
1 AAATGATTATTACTGAAT
* * *
86462964 AAACGACTGTTACTGAAT
1 AAATGATTATTACTGAAT
*
86462982 AGATGATTATTACTGAAT
1 AAATGATTATTACTGAAT
*
86463000 AATTGATTATTA
1 AAATGATTATTA
86463012 TTGATGACTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (18 bp):
AAATGATTATTACTGAAT
Found at i:86464896 original size:31 final size:31
Alignment explanation
Indices: 86464853--86464936 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
86464843 TTAGTCTTGA
86464853 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
86464883 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
86464914 CATATCACTGGGCCGAAGTCTTT
1 CATATCACTGGGCCGAAGCCTTT
86464937 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:86465185 original size:25 final size:25
Alignment explanation
Indices: 86465157--86465226 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
86465147 CTCTTTTAAT
*
86465157 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86465182 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86465207 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
86465227 AGCACTTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:86466063 original size:27 final size:27
Alignment explanation
Indices: 86466033--86466097 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
86466023 GGGCATATTC
*
86466033 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACA
* * *
86466060 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCATTTTACCATACAAGGGCTTTACA
*
86466087 GTCTTTTTACC
1 GTCATTTTACC
86466098 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:86466181 original size:27 final size:27
Alignment explanation
Indices: 86466151--86466236 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
86466141 GTAAATCTAC
86466151 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
86466178 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAAGGTATTTCTATAATTTTGT
* *
86466204 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAAGGTATTTCTATAATTTTGT
86466234 AAA
1 AAA
86466237 TCAGGGGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.43
28 7 0.14
29 20 0.39
30 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:86466256 original size:56 final size:54
Alignment explanation
Indices: 86466148--86466317 Score: 157
Period size: 54 Copynumber: 3.1 Consensus size: 54
86466138 TTGGTAAATC
* * * *
86466148 TACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCA-TAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * *
86466203 TAGAAAGTCAAGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTC-ATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** * ***
86466258 TACAAATTGAGGATATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTC-ATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
86466312 TACAAA
1 TACAAA
86466318 CTAGGGGTAT
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
54 45 0.47
55 14 0.15
56 35 0.37
57 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:86466329 original size:54 final size:53
Alignment explanation
Indices: 86466214--86466406 Score: 158
Period size: 54 Copynumber: 3.6 Consensus size: 53
86466204 AGAAAGTCAA
* *** * *
86466214 GGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTCGATAATTTCACAAACCA-GGGTATTTTGGTAATTTTACAAACTAG
*
86466267 AGGATATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG
1 -GGGTATTTCGATAATTTCACAAACCAG-GGTATTTTGGTAATTTTACAAACTAG
* * * * * * **
86466322 GGGTATTTTGGTAATTTTACAAACTAAGAGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTCGATAATTTCACAAAC-CAGGGTATTTTGGTAATTTTA-CAAACTAG
* *
86466376 GGGTATTTC-AGTAATTTCACAATCGAGGGTA
1 GGGTATTTCGA-TAATTTCACAAACCAGGGTA
86466407 AAACGATAAT
Statistics
Matches: 112, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
53 6 0.05
54 99 0.88
55 7 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGATAATTTCACAAACCAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:86466381 original size:81 final size:81
Alignment explanation
Indices: 86466239--86466397 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 81
86466229 TTTGTAAATC
* * * *
86466239 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGATAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGATATTTCGATAATTTCACAAACCAGGGGTATTTC
* *
86466304 GGTAATTTTACAAACT
66 AGTAATTTCACAAACT
* * **
86466320 AGGGGTATTTTGGTAATTTTACAAACTAA-GAGTATTTTGGTAA-TTCTATCCTA-CAGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGA-TATTTCGATAATTTC-A-CAAACCAGGGGTAT
86466382 TTCAGTAATTTCACAA
63 TTCAGTAATTTCACAA
86466398 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
80 5 0.08
81 58 0.89
82 2 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGATATTTCGATAATTTCACAAACCAGGGGTATTTC
AGTAATTTCACAAACT
Found at i:86466383 original size:27 final size:27
Alignment explanation
Indices: 86466239--86466364 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
86466229 TTTGTAAATC
86466239 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * * * *
86466265 TGAGGATATTTCGATAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
*
86466293 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
86466320 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
86466347 AAGAGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
86466365 CTATCCTACA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 80 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:86466430 original size:27 final size:27
Alignment explanation
Indices: 86466400--86466534 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
86466390 TTTCACAATC
*
86466400 GAGGGTAAAACGATAATTTTGTAAACT
1 GAGGGTAAAACGGTAATTTTGTAAACT
* *
86466427 GAGGGTAAAATGGTAATTTTATAAA-T
1 GAGGGTAAAACGGTAATTTTGTAAACT
* *
86466453 CGAGGGTAAAACGGTAATTCTGTAAATT
1 -GAGGGTAAAACGGTAATTTTGTAAACT
* * * *
86466481 GAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAACGGTAATTTTGTAAACT
*
86466508 GAGGGTAAAACGGTAATTTGGTAAACT
1 GAGGGTAAAACGGTAATTTTGTAAACT
86466535 AAAGTATTCT
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 91 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTTTGTAAACT
Found at i:86466471 original size:54 final size:54
Alignment explanation
Indices: 86466396--86466534 Score: 224
Period size: 54 Copynumber: 2.6 Consensus size: 54
86466386 GTAATTTCAC
* *
86466396 AATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
* *
86466450 AATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
* *
86466504 AATTGAGGGTAAAACGGTAATTTGGTAAACT
1 AATCGAGGGTAAAACGGTAATTTTGTAAACT
86466535 AAAGTATTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
Found at i:86468643 original size:21 final size:21
Alignment explanation
Indices: 86468619--86468678 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
86468609 TTACATTGTC
86468619 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* *
86468640 AACAGAAGCTCATAAGAGGTG
1 AACAGAAGCTCATAAGAGCTA
86468661 AACAGAAGCTCATAAGAG
1 AACAGAAGCTCATAAGAG
86468679 TTGATCTACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.47, C:0.17, G:0.23, T:0.13
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:86479251 original size:45 final size:45
Alignment explanation
Indices: 86479127--86479256 Score: 118
Period size: 45 Copynumber: 2.9 Consensus size: 45
86479117 GCTATACACC
* *
86479127 AAAAATGAGTAAGACCATAGCTGAAAGATGCTATGTCATCATGATG
1 AAAAA-GAATAAGACCATAGCTGAAAGATGCTATGACATCATGATG
* * ** * * ** * *
86479173 GAAATGTGTAAGACCATGGTTGAAAGACACTATGGCATCATGGT-
1 AAAAAGAATAAGACCATAGCTGAAAGATGCTATGACATCATGATG
*
86479217 AAACAAGAATAAGACCATAACTGAAAGATGCTATGACATC
1 AAA-AAGAATAAGACCATAGCTGAAAGATGCTATGACATC
86479257 CTTTGATAGT
Statistics
Matches: 64, Mismatches: 19, Indels: 3
0.74 0.22 0.03
Matches are distributed among these distances:
44 2 0.03
45 59 0.92
46 3 0.05
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.22
Consensus pattern (45 bp):
AAAAAGAATAAGACCATAGCTGAAAGATGCTATGACATCATGATG
Found at i:86479410 original size:27 final size:27
Alignment explanation
Indices: 86479380--86479437 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
86479370 ACATCATACA
86479380 TAGTCTGCCGGGACATTAAACA-AGGAG
1 TAGTCTGCCGGGACATTAAACATAGG-G
* *
86479407 TAGTCTGTCGGGATATTAAACATAGGG
1 TAGTCTGCCGGGACATTAAACATAGGG
86479434 TAGT
1 TAGT
86479438 TTGCTAGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (27 bp):
TAGTCTGCCGGGACATTAAACATAGGG
Found at i:86480327 original size:3 final size:3
Alignment explanation
Indices: 86480319--86480348 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
86480309 TAATCTAGAA
86480319 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
86480349 TTGTGCGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:86481246 original size:21 final size:21
Alignment explanation
Indices: 86481140--86481233 Score: 98
Period size: 21 Copynumber: 4.5 Consensus size: 21
86481130 GAGAAGCAGT
** *
86481140 ATACGACACATAAAGTGCCTG
1 ATACGACACACGAGGTGCCTG
* * *
86481161 TTACGACACACGAGGTTCTTG
1 ATACGACACACGAGGTGCCTG
* *
86481182 ATACGACACACGAGGTTCCCG
1 ATACGACACACGAGGTGCCTG
* *
86481203 TTACGACACACGAGGTACCTG
1 ATACGACACACGAGGTGCCTG
86481224 ATACGACACA
1 ATACGACACA
86481234 TAAAGTGCCT
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:86481675 original size:3 final size:3
Alignment explanation
Indices: 86481667--86481691 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
86481657 CGGCACTAAT
86481667 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
86481692 TGAATTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:86481736 original size:17 final size:18
Alignment explanation
Indices: 86481702--86481737 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86481692 TGAATTTCCA
86481702 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
86481720 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
86481737 T
1 T
86481738 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:86482431 original size:30 final size:28
Alignment explanation
Indices: 86482376--86482437 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
86482366 ATTATTTAAT
86482376 TAATAAATATCTTTTACTTAATAATAAA
1 TAATAAATATCTTTTACTTAATAATAAA
*
86482404 TAATAAATATCTATTTACTTAAATAATAAG
1 TAATAAATATCT-TTTACTT-AATAATAAA
86482434 TAAT
1 TAAT
86482438 TTAAATCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 7 0.23
30 12 0.39
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (28 bp):
TAATAAATATCTTTTACTTAATAATAAA
Found at i:86482959 original size:20 final size:20
Alignment explanation
Indices: 86482923--86482962 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
86482913 AAAAAGAAAC
**
86482923 ATAACTATTCATTTAATATT
1 ATAACTATTCAACTAATATT
86482943 ATAACTATTCAACTAATATT
1 ATAACTATTCAACTAATATT
86482963 GTTTGAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAACTATTCAACTAATATT
Found at i:86486409 original size:5 final size:6
Alignment explanation
Indices: 86486394--86486426 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
86486384 AAAGGAATGT
86486394 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
86486427 GAAGGGAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:86486601 original size:6 final size:7
Alignment explanation
Indices: 86486584--86486610 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
86486574 TCATTTAATT
86486584 TTTTTTA
1 TTTTTTA
86486591 TTTTTTA
1 TTTTTTA
86486598 TTTTTTA
1 TTTTTTA
86486605 TTTTTT
1 TTTTTT
86486611 GCGCAATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:86493561 original size:41 final size:41
Alignment explanation
Indices: 86493516--86493597 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
86493506 CTATTCAAAA
*
86493516 GTTTTCATTTAAGTCGCTAAACTATTTGAAAGCTTTTATTT
1 GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
86493557 GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
1 GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
86493598 AAGTCACTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (41 bp):
GTTTTCATTGAAGTCGCTAAACTATTTGAAAGCTTTTATTT
Found at i:86496007 original size:29 final size:29
Alignment explanation
Indices: 86495958--86496013 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
86495948 ATAGGGACTT
86495958 GATCAAATTAGTCTCTCTACTATTAAATA
1 GATCAAATTAGTCTCTCTACTATTAAATA
* *
86495987 GATCAATTTAGTC-CTTGTACTATTAAA
1 GATCAAATTAGTCTC-TCTACTATTAAA
86496014 AGAAAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 23 0.96
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (29 bp):
GATCAAATTAGTCTCTCTACTATTAAATA
Found at i:86501698 original size:25 final size:25
Alignment explanation
Indices: 86501648--86501708 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
86501638 TATCCATGAT
* * *
86501648 ATAAATATAAAAATTTTCTATTAAA
1 ATAAAAATAAAAATTTTCAATCAAA
86501673 ATAAAAATAAAAATTTAT-AATCAAA
1 ATAAAAATAAAAATTT-TCAATCAAA
86501698 ACT-AAAATAAA
1 A-TAAAAATAAA
86501709 TAATAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAAAAATAAAAATTTTCAATCAAA
Found at i:86507304 original size:17 final size:17
Alignment explanation
Indices: 86507279--86507312 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86507269 AAAATGCCAC
* *
86507279 TGTATCTCAATTTTTTG
1 TGTAGCTCAAATTTTTG
86507296 TGTAGCTCAAATTTTTG
1 TGTAGCTCAAATTTTTG
86507313 CGGCGTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.53
Consensus pattern (17 bp):
TGTAGCTCAAATTTTTG
Found at i:86507529 original size:15 final size:15
Alignment explanation
Indices: 86507511--86507544 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
86507501 AAATTTTAAG
86507511 TTTTTAAGTTTTTAT
1 TTTTTAAGTTTTTAT
**
86507526 TTTTTATTTTTTTAT
1 TTTTTAAGTTTTTAT
86507541 TTTT
1 TTTT
86507545 CAATTTTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTAAGTTTTTAT
Found at i:86507551 original size:7 final size:7
Alignment explanation
Indices: 86507541--86507572 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
86507531 ATTTTTTTAT
86507541 TTTTCAA
1 TTTTCAA
86507548 TTTTCAA
1 TTTTCAA
86507555 TTTTCAA
1 TTTTCAA
86507562 TTTTCAA
1 TTTTCAA
86507569 TTTT
1 TTTT
86507573 TTTAAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (7 bp):
TTTTCAA
Found at i:86508226 original size:6 final size:6
Alignment explanation
Indices: 86508217--86508253 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
86508207 TTTCAAAACC
*
86508217 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
86508254 TCATATGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:86508473 original size:20 final size:21
Alignment explanation
Indices: 86508450--86508488 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
86508440 TTATATTTCA
86508450 TTTTTATTTA-TTATCAATGT
1 TTTTTATTTATTTATCAATGT
86508470 TTTTTATTTATTTATCAAT
1 TTTTTATTTATTTATCAAT
86508489 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (21 bp):
TTTTTATTTATTTATCAATGT
Found at i:86508495 original size:21 final size:20
Alignment explanation
Indices: 86508451--86508495 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
86508441 TATATTTCAT
* *
86508451 TTTTATTTATTATCAATGTT
1 TTTTATTTATTATCAATATA
86508471 TTTTATTTATTTATCAATATA
1 TTTTATTTA-TTATCAATATA
86508492 TTTT
1 TTTT
86508496 TTAAATCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTATTTATTATCAATATA
Found at i:86509159 original size:8 final size:8
Alignment explanation
Indices: 86509130--86509172 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
86509120 ATAGATTAGT
86509130 GTTTAGGG
1 GTTTAGGG
* *
86509138 TTTTTGGG
1 GTTTAGGG
*
86509146 GGTTAGGG
1 GTTTAGGG
86509154 GTTTAGGG
1 GTTTAGGG
*
86509162 TTTTAGGG
1 GTTTAGGG
86509170 GTT
1 GTT
86509173 ATATAGACTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.09, C:0.00, G:0.47, T:0.44
Consensus pattern (8 bp):
GTTTAGGG
Found at i:86509278 original size:41 final size:41
Alignment explanation
Indices: 86509250--86509505 Score: 392
Period size: 41 Copynumber: 6.3 Consensus size: 41
86509240 CGTTTTTGGT
*
86509250 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTACCA
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
*
86509291 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGACA
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
*
86509332 AAAATGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
* * *
86509373 AAAATGCCGCTATTGCTCT-ATTTTTAGCGGAGCTTTGCCA
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
*
86509413 AAAACACCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
* * *
86509454 AAAATGCCGCTATTGCTCTG-TTTTTAGCGGCGTTTTTGGC-
1 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCG-CTTTGCCA
86509494 AAAACGCCGCTA
1 AAAACGCCGCTA
86509506 ATGTATAATT
Statistics
Matches: 198, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
40 59 0.30
41 139 0.70
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (41 bp):
AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
Found at i:86509449 original size:122 final size:122
Alignment explanation
Indices: 86509250--86509505 Score: 408
Period size: 122 Copynumber: 2.1 Consensus size: 122
86509240 CGTTTTTGGT
* * *
86509250 AAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGTTTT
1 AAAACGCCGCTATTGCTCTGATTTTTAGCGGAGCTTTACCAAAAACACCGCTATTGCTCTGTTTT
86509315 TTAGCGGCGCTTTGACAAAAATGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCA
66 TTAGCGGCGCTTTGACAAAAATGCCGCTATTGCTCTG-TTTTTAGCGGCGCTTTGCCA
* *
86509373 AAAATGCCGCTATTGCTCT-ATTTTTAGCGGAGCTTTGCCAAAAACACCGCTATTGCTCTGTTTT
1 AAAACGCCGCTATTGCTCTGATTTTTAGCGGAGCTTTACCAAAAACACCGCTATTGCTCTGTTTT
* * *
86509437 TTAGCGGCGCTTTGCCAAAAATGCCGCTATTGCTCTGTTTTTAGCGGCGTTTTTGGC-
66 TTAGCGGCGCTTTGACAAAAATGCCGCTATTGCTCTGTTTTTAGCGGCG-CTTTGCCA
86509494 AAAACGCCGCTA
1 AAAACGCCGCTA
86509506 ATGTATAATT
Statistics
Matches: 123, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 23 0.19
122 82 0.67
123 18 0.15
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (122 bp):
AAAACGCCGCTATTGCTCTGATTTTTAGCGGAGCTTTACCAAAAACACCGCTATTGCTCTGTTTT
TTAGCGGCGCTTTGACAAAAATGCCGCTATTGCTCTGTTTTTAGCGGCGCTTTGCCA
Found at i:86509518 original size:81 final size:81
Alignment explanation
Indices: 86509231--86509505 Score: 410
Period size: 81 Copynumber: 3.4 Consensus size: 81
86509221 GTTATATGAC
* * *
86509231 TTTTAGCGGCGTTTTTGG-TAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTACCAAAAA
1 TTTTAGCGGCG-CTTTGGCAAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAA
*
86509295 CGCCGCTATTGCTCTGTT
65 TGCCGCTATTGCTCTG-T
* *
86509313 TTTTAGCGGCGCTTTGACAAAAATGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAAT
1 TTTTAGCGGCGCTTTGGCAAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAAT
*
86509378 GCCGCTATTGCTCTAT
66 GCCGCTATTGCTCTGT
* * *
86509394 TTTTAGCGGAGCTTTGCCAAAAACACCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAAT
1 TTTTAGCGGCGCTTTGGCAAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAAT
86509459 GCCGCTATTGCTCTGT
66 GCCGCTATTGCTCTGT
*
86509475 TTTTAGCGGCGTTTTTGGC-AAAACGCCGCTA
1 TTTTAGCGGCG-CTTTGGCAAAAACGCCGCTA
86509506 ATGTATAATT
Statistics
Matches: 175, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
81 102 0.58
82 73 0.42
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (81 bp):
TTTTAGCGGCGCTTTGGCAAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTTGCCAAAAAT
GCCGCTATTGCTCTGT
Found at i:86509549 original size:12 final size:12
Alignment explanation
Indices: 86509534--86509559 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86509524 ATTTTTTCAT
86509534 AAAACGCCGCTA
1 AAAACGCCGCTA
86509546 AAAACGCCGCTA
1 AAAACGCCGCTA
86509558 AA
1 AA
86509560 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:86531327 original size:3 final size:3
Alignment explanation
Indices: 86531306--86531368 Score: 51
Period size: 3 Copynumber: 20.7 Consensus size: 3
86531296 TTTTTTAACC
* *
86531306 TTA TTT TTA -TA TTA TTTA TTA TAA TTA TT- TTA TTA TATA TTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
86531350 TATA TTA TTA TTA TCTA TT
1 T-TA TTA TTA TTA T-TA TT
86531369 GTATATTGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
2 5 0.10
3 34 0.69
4 10 0.20
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:86531339 original size:21 final size:19
Alignment explanation
Indices: 86531306--86531476 Score: 71
Period size: 20 Copynumber: 8.3 Consensus size: 19
86531296 TTTTTTAACC
*
86531306 TTATTTTTA-TATTATTTA
1 TTATTTATATTATTATTTA
* *
86531324 TTATAATTATTTTATTATATA
1 TTAT--TTATATTATTATTTA
86531345 TTATTTATATTATTA-TTA
1 TTATTTATATTATTATTTA
*
86531363 TCTATTGTATATTGTT-TTTCA
1 T-TATT-TATATTATTATTT-A
** * *
86531384 CAAATTATTATTATTTACATTA
1 TTATTTA-TATTA-TTA-TTTA
86531406 TTACTTATATATTATTATGTT-
1 TTA-TT-TATATTATTAT-TTA
*
86531427 TTACTTGTATTATATATTTATTAA
1 TTA-TT-TA-TAT-TA-TTATTTA
*
86531451 TTATTTATATATATTATGTA
1 TTATTTATAT-TATTATTTA
86531471 TTATTT
1 TTATTT
86531477 TTTTTGCATA
Statistics
Matches: 116, Mismatches: 19, Indels: 34
0.69 0.11 0.20
Matches are distributed among these distances:
18 7 0.06
19 16 0.14
20 30 0.26
21 29 0.25
22 12 0.10
23 13 0.11
24 9 0.08
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (19 bp):
TTATTTATATTATTATTTA
Found at i:86531344 original size:16 final size:16
Alignment explanation
Indices: 86531313--86531363 Score: 67
Period size: 15 Copynumber: 3.5 Consensus size: 16
86531303 ACCTTATTTT
86531313 TATATTA-TT-TATTA
1 TATATTATTTATATTA
86531327 TA-ATTATTT-TATTA
1 TATATTATTTATATTA
86531341 TATATTATTTATATTA
1 TATATTATTTATATTA
86531357 T-TATTAT
1 TATATTAT
86531364 CTATTGTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.12
14 11 0.32
15 13 0.38
16 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATATTATTTATATTA
Found at i:86531766 original size:19 final size:20
Alignment explanation
Indices: 86531744--86531781 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
86531734 TTTATATATA
86531744 TATTATATA-ATTATTTTAT
1 TATTATATACATTATTTTAT
* *
86531763 TATTTTATACATTCTTTTA
1 TATTATATACATTATTTTA
86531782 CATACTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTATATACATTATTTTAT
Found at i:86531771 original size:28 final size:27
Alignment explanation
Indices: 86531740--86531805 Score: 62
Period size: 28 Copynumber: 2.4 Consensus size: 27
86531730 TATATTTATA
*
86531740 TATATATTATATA-ATTATTTTATTATTT
1 TATATATTATATACA-TACTTT-TTATTT
* * *
86531768 TATACATTCTTTTACATACTTTTTATTT
1 TATATATT-ATATACATACTTTTTATTT
86531796 TATATATTAT
1 TATATATTAT
86531806 TTTTTTAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
27 1 0.03
28 20 0.67
29 8 0.27
30 1 0.03
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (27 bp):
TATATATTATATACATACTTTTTATTT
Found at i:86536682 original size:38 final size:38
Alignment explanation
Indices: 86536626--86536705 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
86536616 GATGTGTATT
* * * *
86536626 CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
86536664 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
86536702 CGGG
1 CGGG
86536706 CCTTCGTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:86536753 original size:43 final size:43
Alignment explanation
Indices: 86536677--86536852 Score: 284
Period size: 43 Copynumber: 4.1 Consensus size: 43
86536667 GATAAATCCC
* * *
86536677 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
86536718 GCAGGCTTAGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
86536761 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
86536804 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
86536847 GTAGGC
1 GCAGGC
86536853 GTATGCAGGT
Statistics
Matches: 126, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
41 15 0.12
42 2 0.02
43 109 0.87
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:86538406 original size:30 final size:30
Alignment explanation
Indices: 86538371--86538430 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86538361 TATTTTATTA
*
86538371 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
86538401 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
86538431 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:86538955 original size:24 final size:23
Alignment explanation
Indices: 86538911--86538967 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
86538901 TTAAGTAAAT
86538911 ATTTTTTAAAAAATTTAATTTCA
1 ATTTTTTAAAAAATTTAATTTCA
* *
86538934 ATTTGTTTGAAAACATTT-ATTTTA
1 ATTT-TTT-AAAAAATTTAATTTCA
86538958 ATATTTTTAA
1 AT-TTTTTAA
86538968 TATTTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 6 0.21
24 13 0.45
25 10 0.34
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
ATTTTTTAAAAAATTTAATTTCA
Found at i:86542738 original size:5 final size:5
Alignment explanation
Indices: 86542728--86542753 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
86542718 AAGAAATCAA
86542728 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
86542754 TCAAAGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:86544404 original size:16 final size:15
Alignment explanation
Indices: 86544348--86544405 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 15
86544338 AAAATTATAA
*
86544348 TGATAAATTTATTAT
1 TGATAAATTTATTTT
* *
86544363 T--TAAA-TCATATT
1 TGATAAATTTATTTT
86544375 T-ATAAATTTATTTT
1 TGATAAATTTATTTT
86544389 TGATAAATTATATTTT
1 TGATAAATT-TATTTT
86544405 T
1 T
86544406 TTTCTTGAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 5 0.15
13 8 0.24
14 6 0.18
15 8 0.24
16 7 0.21
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (15 bp):
TGATAAATTTATTTT
Found at i:86545812 original size:45 final size:45
Alignment explanation
Indices: 86545746--86545859 Score: 176
Period size: 45 Copynumber: 2.5 Consensus size: 45
86545736 TATACGCCTA
*
86545746 AAATGAGTAAGACCATAGCTGAAAGGTGCTATGACATCATGAT-T
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAT
86545790 AAGATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAT
1 AA-ATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAT
* * *
86545836 AAATGAGTAAAATCATGGCTGAAA
1 AAATGAGTAAGACCATAGCTGAAA
86545860 AACGGTTTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
44 2 0.03
45 59 0.92
46 3 0.05
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATAT
Found at i:86545871 original size:45 final size:45
Alignment explanation
Indices: 86545748--86545873 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
86545738 TACGCCTAAA
* ***
86545748 ATGAGTAAGACCATAGCTGAAAGGTGCTATGACATCATGATTAAG
1 ATGAGTAAAACCATAGCTGAAAAACGCTATGACATCATGATTAAG
* * *
86545793 ATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGATATAA-
1 ATGAGTAAAACCATAGCTGAAAAACGCTATGACATCATGAT-TAAG
* * * *
86545838 ATGAGTAAAATCATGGCTGAAAAACGGTTTGACATC
1 ATGAGTAAAACCATAGCTGAAAAACGCTATGACATC
86545874 CTAGTAATCC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 69 0.96
46 3 0.04
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (45 bp):
ATGAGTAAAACCATAGCTGAAAAACGCTATGACATCATGATTAAG
Found at i:86545976 original size:27 final size:27
Alignment explanation
Indices: 86545946--86546058 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
86545936 TTATCATAGA
* * *
86545946 TAGTCTGATAGGACGTTAAACAGGAAG
1 TAGTCCGATAGGACGTTAAACACGAGG
* *
86545973 TAGTCCGA-CGAGACGTTAAACATGAGG
1 TAGTCCGATAG-GACGTTAAACACGAGG
* * *
86546000 TAGTCTGATATGATGTTAAACACGAGG
1 TAGTCCGATAGGACGTTAAACACGAGG
* * *
86546027 TAGTCCAACAGGACGTTAAACACGAGA
1 TAGTCCGATAGGACGTTAAACACGAGG
86546054 TAGTC
1 TAGTC
86546059 TAACGAGACA
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 68 0.99
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (27 bp):
TAGTCCGATAGGACGTTAAACACGAGG
Found at i:86546009 original size:54 final size:54
Alignment explanation
Indices: 86545943--86546059 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
86545933 ATGTTATCAT
* * *
86545943 AGATAGTCTGATAGGACGTTAAACAGGAAGTAGTCCGAC-GAGACGTTAAACATG
1 AGATAGTCTGATAGGACGTTAAACACGAAGTAGTCCAACAG-GACGTTAAACACG
* * * *
86545997 AGGTAGTCTGATATGATGTTAAACACGAGGTAGTCCAACAGGACGTTAAACACG
1 AGATAGTCTGATAGGACGTTAAACACGAAGTAGTCCAACAGGACGTTAAACACG
86546051 AGATAGTCT
1 AGATAGTCT
86546060 AACGAGACAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
54 53 0.98
55 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.22
Consensus pattern (54 bp):
AGATAGTCTGATAGGACGTTAAACACGAAGTAGTCCAACAGGACGTTAAACACG
Found at i:86546072 original size:27 final size:27
Alignment explanation
Indices: 86546015--86546075 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
86546005 TGATATGATG
* *
86546015 TTAAACACGAGGTAGTCCAACAGGACG
1 TTAAACACGAGATAGTCCAACAGGACA
*
86546042 TTAAACACGAGATAGTCTAAC-GAGACA
1 TTAAACACGAGATAGTCCAACAG-GACA
86546069 TTAAACA
1 TTAAACA
86546076 AGGAATAGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
TTAAACACGAGATAGTCCAACAGGACA
Found at i:86556718 original size:26 final size:26
Alignment explanation
Indices: 86556671--86556720 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
86556661 AAATAGTAAA
* *
86556671 TAAATAATATTTATCACAATGATAAT
1 TAAATAATAGTTATCAAAATGATAAT
86556697 TAAATAATAGTTAT-AAATATGATA
1 TAAATAATAGTTATCAAA-ATGATA
86556721 CTATTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (26 bp):
TAAATAATAGTTATCAAAATGATAAT
Found at i:86558821 original size:19 final size:19
Alignment explanation
Indices: 86558778--86558826 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
86558768 ATTTTAATTC
* *
86558778 TTTTATTCATTTATTTACTT
1 TTTTATT-ATTCATTCACTT
*
86558798 ATTTATTATTCATTCACTT
1 TTTTATTATTCATTCACTT
*
86558817 TTTTAATATT
1 TTTTATTATT
86558827 TAAAATTGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTATTATTCATTCACTT
Found at i:86567249 original size:43 final size:43
Alignment explanation
Indices: 86567184--86567412 Score: 271
Period size: 43 Copynumber: 5.3 Consensus size: 43
86567174 TATTTAAAAA
* * *
86567184 AAACGCCGCTAAAGGCCATGACCTTTAGTGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGGCCGTGACCTTTAGCGGCGCTTTTCCCAC
* * * *
86567227 AAACGTCGCTAAAGGTCGTGACCTTTAACGGCACTTTTCCCAC
1 AAACGCCGCTAAAGGCCGTGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
86567270 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGTGCTTTTCCCAA
1 AAACGCCGCTAAAGGCCGTGACCTTTAGCGGCGCTTTTCCCAC
* * *
86567313 AAACGCTGCTAAAAGCCGCGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCGTGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
86567356 AGACG-CGCTAAAAGCCGCGACCTTTAGCGACACTTTTCCCAC
1 AAACGCCGCTAAAGGCCGTGACCTTTAGCGGCGCTTTTCCCAC
86567398 AAACGCCGCTAAAGG
1 AAACGCCGCTAAAGG
86567413 TCATGAAATT
Statistics
Matches: 157, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 38 0.24
43 119 0.76
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCGTGACCTTTAGCGGCGCTTTTCCCAC
Found at i:86567411 original size:128 final size:129
Alignment explanation
Indices: 86567182--86567417 Score: 357
Period size: 128 Copynumber: 1.8 Consensus size: 129
86567172 TTTATTTAAA
* * * * * * *
86567182 AAAAACGCCGCTAAAGGCCATGACCTTTAGTGGCGCTTTTTCCACAAACGTCGCTAAAGGTCGTG
1 AAAAACGCCGCTAAAAGCCACGACCTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAAGCCGCG
*
86567247 ACCTTTAACGGCACTTTTCCCACAAACGCCGCTAAAGGTCATGGCCTTTAGCGGTGCTTTTCCC
66 ACCTTTAACGACACTTTTCCCACAAACGCCGCTAAAGGTCATGGCCTTTAGCGGTGCTTTTCCC
* * *
86567311 AAAAACGCTGCTAAAAGCCGCGACCTTTAGCGGCGCTTTTCCCACAGACG-CGCTAAAAGCCGCG
1 AAAAACGCCGCTAAAAGCCACGACCTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAAGCCGCG
*
86567375 ACCTTTAGCGACACTTTTCCCACAAACGCCGCTAAAGGTCATG
66 ACCTTTAACGACACTTTTCCCACAAACGCCGCTAAAGGTCATG
86567418 AAATTTTAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
128 52 0.55
129 43 0.45
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (129 bp):
AAAAACGCCGCTAAAAGCCACGACCTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAAGCCGCG
ACCTTTAACGACACTTTTCCCACAAACGCCGCTAAAGGTCATGGCCTTTAGCGGTGCTTTTCCC
Found at i:86567722 original size:19 final size:19
Alignment explanation
Indices: 86567677--86567723 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
86567667 TAAATATTAA
*
86567677 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
86567696 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
86567715 AATAAAAAT
1 AATAAAAAT
86567724 TAGATTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:86571903 original size:49 final size:46
Alignment explanation
Indices: 86571815--86571911 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 46
86571805 CTTCAAATAC
* *
86571815 TAGTTAACTCCTAAACTTTAAACCCTAAACCGTACATCTTAAACCA
1 TAGTTAACTCATAAACTTTAAACCCTAAACCATACATCTTAAACCA
*
86571861 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAA-CT--TTAAACCCTAAACCATACATCTTAAACCA
86571910 TA
1 TA
86571912 AACCTTAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 14 0.31
47 2 0.04
49 29 0.64
ACGTcount: A:0.40, C:0.27, G:0.04, T:0.29
Consensus pattern (46 bp):
TAGTTAACTCATAAACTTTAAACCCTAAACCATACATCTTAAACCA
Found at i:86571908 original size:14 final size:14
Alignment explanation
Indices: 86571882--86571926 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
86571872 TAAACCTGCT
*
86571882 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
86571896 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
86571910 TAAACCTTAAACTA
1 TAAACCTTAAACCA
86571924 TAA
1 TAA
86571927 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:86572146 original size:41 final size:41
Alignment explanation
Indices: 86572084--86572168 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
86572074 GTTATATGAC
* *
86572084 TTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
86572125 TTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
86572166 TTT
1 TTT
86572169 AGCAGCGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (41 bp):
TTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
Found at i:86573773 original size:3 final size:3
Alignment explanation
Indices: 86573765--86573818 Score: 65
Period size: 3 Copynumber: 18.3 Consensus size: 3
86573755 AGGAAAAATA
* * * *
86573765 AAT AAT AAT GAT AAT AAT AAT ACT AAT AAT AAT AAT AAC AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
86573813 AA- AAT A
1 AAT AAT A
86573819 TAAAAGTACA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Done.