Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 27 of 320
Found at i:7610765 original size:27 final size:25
Alignment explanation
Indices: 7610711--7610765 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 25
7610701 TTTTGAGTAA
7610711 TTTAATTTTTTTTCTTTTATATTCT
1 TTTAATTTTTTTTCTTTTATATTCT
*
7610736 TTTAACTTTTCTTTT-TTTTTTCATTCT
1 TTTAA-TTTT-TTTTCTTTTAT-ATTCT
7610763 TTT
1 TTT
7610766 TTGCTTCTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 5 0.19
26 9 0.35
27 12 0.46
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTAATTTTTTTTCTTTTATATTCT
Found at i:7613313 original size:27 final size:27
Alignment explanation
Indices: 7613253--7613339 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
7613243 GTAATGCAAA
* * *
7613253 AATCTAACCGTTACAATATGATTGTTGG
1 AATCTGACCGTTACAATATG-CTATTGG
*
7613281 AATCTGACCATTACAATATGCTATTGG
1 AATCTGACCGTTACAATATGCTATTGG
*
7613308 AATCTGACCGTTACAATATGCCATTGG
1 AATCTGACCGTTACAATATGCTATTGG
7613335 AATCT
1 AATCT
7613340 AGTCGTTGCA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 35 0.66
28 18 0.34
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (27 bp):
AATCTGACCGTTACAATATGCTATTGG
Found at i:7624143 original size:26 final size:27
Alignment explanation
Indices: 7624114--7624170 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7624104 CCTGAATTTG
* *
7624114 ATTTTTTTTACT-AATTTGATACTTAA
1 ATTTTTTTAACTCAATTAGATACTTAA
* *
7624140 ATTTTTTTAATTCAATTAGATATTTAA
1 ATTTTTTTAACTCAATTAGATACTTAA
7624167 ATTT
1 ATTT
7624171 GACACTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (27 bp):
ATTTTTTTAACTCAATTAGATACTTAA
Found at i:7626155 original size:49 final size:49
Alignment explanation
Indices: 7626041--7626155 Score: 135
Period size: 49 Copynumber: 2.4 Consensus size: 49
7626031 GGACATGTGG
* * * *
7626041 GGGA-ACACGAGCGTGTACGATTACACGGTCAAATTAGGTAGGCCGTGT
1 GGGACACACGAGCGTGTGCAATTACACGGGCAAATCAGGTAGGCCGTGT
* * *
7626089 -GGAGCACACGGGTGTGTGCAATTACACGGGCAAATCAGGTAGGTCGTGT
1 GGGA-CACACGAGCGTGTGCAATTACACGGGCAAATCAGGTAGGCCGTGT
*
7626138 GGGACACACAAGCGTGTG
1 GGGACACACGAGCGTGTG
7626156 AAATCACATA
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
47 3 0.06
49 48 0.89
50 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.36, T:0.19
Consensus pattern (49 bp):
GGGACACACGAGCGTGTGCAATTACACGGGCAAATCAGGTAGGCCGTGT
Found at i:7627554 original size:31 final size:31
Alignment explanation
Indices: 7627513--7627571 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
7627503 AAGGTCACTA
*
7627513 AACTATTTGAAAGTTTTCATTTAAGTCATTG
1 AACTAGTTGAAAGTTTTCATTTAAGTCATTG
*
7627544 AACTAGTTGAAAGTTTTTATTTAAGTCA
1 AACTAGTTGAAAGTTTTCATTTAAGTCA
7627572 CTGGACTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (31 bp):
AACTAGTTGAAAGTTTTCATTTAAGTCATTG
Found at i:7629269 original size:243 final size:243
Alignment explanation
Indices: 7628837--7629328 Score: 921
Period size: 243 Copynumber: 2.0 Consensus size: 243
7628827 TTCCTCATCC
7628837 GGAATGTCCAAATCCCATACCCTGAAGATATCCACTGTTGATGAATTCATCTCTTCTGCAGATAA
1 GGAATGTCCAAATCCCATACCCTGAAGATATCCACTGTTGATGAATTCATCTCTTCTGCAGATAA
7628902 GCTTGATTTAACTCCTGAATCAACAGCACTATCCTTTCTTTCATTCTCCTTGTAGGTGGGTCGGA
66 GCTTGATTTAACTCCTGAATCAACAGCACTATCCTTTCTTTCATTCTCCTTGTAGGTGGGTCGGA
* *
7628967 AAGGATCTCCCCGAAACATTTTAGTGGAATCTTCCTGAAGAAATTGCAGCTGAGTACCAGTCCTC
131 AAGGATCTCCCCAAAACATTTCAGTGGAATCTTCCTGAAGAAATTGCAGCTGAGTACCAGTCCTC
*
7629032 TTTTTGATAGGAATGTTGTTGGTGTTTATTCCATTGTCTCCATCCACT
196 TTTTTGATAGGAATGTTGTTGGTGTTCATTCCATTGTCTCCATCCACT
*
7629080 GGAATGTCCAAATCCCATACCCTGAAGATATCCGCTGTTGATGAATTCATCTCTTCTGCAGATAA
1 GGAATGTCCAAATCCCATACCCTGAAGATATCCACTGTTGATGAATTCATCTCTTCTGCAGATAA
7629145 GCTTGATTTAACTCCTGAATCAACAGCACTATCCTTTCTTTCATTCTCCTTGTAGGTGGGTCGGA
66 GCTTGATTTAACTCCTGAATCAACAGCACTATCCTTTCTTTCATTCTCCTTGTAGGTGGGTCGGA
* *
7629210 AAGGATCTCCCCAAAACATTTCAGTGGAATCTTCCTGAAGAAATTGCTGCTGGGTACCAGTCCTC
131 AAGGATCTCCCCAAAACATTTCAGTGGAATCTTCCTGAAGAAATTGCAGCTGAGTACCAGTCCTC
*
7629275 TTTTTGATAGGAATGTTGTTGGTGTTCATTCCATTTTCTCCATCCACT
196 TTTTTGATAGGAATGTTGTTGGTGTTCATTCCATTGTCTCCATCCACT
7629323 GGAATG
1 GGAATG
7629329 ACAAGAAGAT
Statistics
Matches: 242, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
243 242 1.00
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (243 bp):
GGAATGTCCAAATCCCATACCCTGAAGATATCCACTGTTGATGAATTCATCTCTTCTGCAGATAA
GCTTGATTTAACTCCTGAATCAACAGCACTATCCTTTCTTTCATTCTCCTTGTAGGTGGGTCGGA
AAGGATCTCCCCAAAACATTTCAGTGGAATCTTCCTGAAGAAATTGCAGCTGAGTACCAGTCCTC
TTTTTGATAGGAATGTTGTTGGTGTTCATTCCATTGTCTCCATCCACT
Found at i:7633493 original size:18 final size:18
Alignment explanation
Indices: 7633450--7633493 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7633440 TTAGTAGTGC
7633450 TAAAAAAAATATTTCTGA
1 TAAAAAAAATATTTCTGA
*** *
7633468 TTTCAAAAATATTTTTGA
1 TAAAAAAAATATTTCTGA
7633486 TAAAAAAA
1 TAAAAAAA
7633494 GTTGTACTAA
Statistics
Matches: 19, Mismatches: 7, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
TAAAAAAAATATTTCTGA
Found at i:7634098 original size:16 final size:16
Alignment explanation
Indices: 7634077--7634117 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
7634067 TTACAAAAAG
7634077 AATACAAGAGAAATAT
1 AATACAAGAGAAATAT
7634093 AATACAAGAGAAATAT
1 AATACAAGAGAAATAT
*
7634109 AATATAAGA
1 AATACAAGA
7634118 TACACACGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.20
Consensus pattern (16 bp):
AATACAAGAGAAATAT
Found at i:7635049 original size:21 final size:21
Alignment explanation
Indices: 7635023--7635098 Score: 64
Period size: 24 Copynumber: 3.5 Consensus size: 21
7635013 TTAGATATTA
7635023 TTATTATCATTACTATTTTTG
1 TTATTATCATTACTATTTTTG
* *
7635044 TTATTATTTTTATTACTATTTCTG
1 TTATTA---TCATTACTATTTTTG
** *
7635068 TTATTATTTTTACTATTATT-
1 TTATTATCATTACTATTTTTG
*
7635088 TTACTATCATT
1 TTATTATCATT
7635099 TTTTTTATAT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
20 8 0.18
21 17 0.39
24 19 0.43
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.64
Consensus pattern (21 bp):
TTATTATCATTACTATTTTTG
Found at i:7635051 original size:12 final size:12
Alignment explanation
Indices: 7635018--7635089 Score: 72
Period size: 12 Copynumber: 6.0 Consensus size: 12
7635008 TACTATTAGA
*
7635018 TATTATTATTAT
1 TATTATTATTTT
* *
7635030 CATTACTATTTT
1 TATTATTATTTT
*
7635042 TGTTATTATTTT
1 TATTATTATTTT
* *
7635054 TATTACTATTTC
1 TATTATTATTTT
*
7635066 TGTTATTATTTT
1 TATTATTATTTT
*
7635078 TACTATTATTTT
1 TATTATTATTTT
7635090 ACTATCATTT
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.24, C:0.07, G:0.03, T:0.67
Consensus pattern (12 bp):
TATTATTATTTT
Found at i:7635058 original size:24 final size:24
Alignment explanation
Indices: 7635020--7635089 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
7635010 CTATTAGATA
* *
7635020 TTATTATTATCATTACTATTTTTG
1 TTATTATTTTTATTACTATTTTTG
*
7635044 TTATTATTTTTATTACTATTTCTG
1 TTATTATTTTTATTACTATTTTTG
* *
7635068 TTATTATTTTTACTATTATTTT
1 TTATTATTTTTATTACTATTTT
7635090 ACTATCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (24 bp):
TTATTATTTTTATTACTATTTTTG
Found at i:7635803 original size:35 final size:34
Alignment explanation
Indices: 7635757--7635980 Score: 263
Period size: 35 Copynumber: 6.5 Consensus size: 34
7635747 TTTCCTTATT
* *
7635757 GAAATACCATACCTACATTTCACAACTCGGTATGG
1 GAAATACCATACCTACGTTTCACAACTCAGTAT-G
* ** *
7635792 GAAATGCCATACCTACG-TTCTTAACTTAGTATG
1 GAAATACCATACCTACGTTTCACAACTCAGTATG
*
7635825 GATAATATCATACCTACGTTTCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
*
7635860 GATGATACCATACCTACGTTTCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
* *
7635895 GTTAATACCATATCTAC-TTTCACAACTCAGTATG
1 G-AAATACCATACCTACGTTTCACAACTCAGTATG
* *
7635929 GATGATACCATACCTACGTTTCACAACTCGGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
*
7635964 GTTAATACCATACCTAC
1 G-AAATACCATACCTAC
7635981 TGTTAGAATT
Statistics
Matches: 161, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
33 3 0.02
34 54 0.34
35 104 0.65
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (34 bp):
GAAATACCATACCTACGTTTCACAACTCAGTATG
Found at i:7635875 original size:69 final size:69
Alignment explanation
Indices: 7635759--7635981 Score: 315
Period size: 69 Copynumber: 3.2 Consensus size: 69
7635749 TCCTTATTGA
* * * ** *
7635759 AATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATACCTACG-TTCTTAACTTAGT
1 AATACCATACCTAC-TTTCACAACTCAGTAT-GGATGATACCATACCTACGTTTCACAACTCAGT
*
7635822 ATGGAT
64 ATGGTT
*
7635828 AATATCATACCTACGTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTAC-TTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
7635893 TGGTT
65 TGGTT
* *
7635898 AATACCATATCTACTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCGGTAT
1 AATACCATACCTACTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTAT
7635963 GGTT
66 GGTT
7635967 AATACCATACCTACT
1 AATACCATACCTACT
7635982 GTTAGAATTA
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
68 3 0.02
69 109 0.78
70 27 0.19
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (69 bp):
AATACCATACCTACTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTAT
GGTT
Found at i:7635894 original size:104 final size:104
Alignment explanation
Indices: 7635759--7635980 Score: 309
Period size: 104 Copynumber: 2.1 Consensus size: 104
7635749 TCCTTATTGA
* * ** *
7635759 AATACCATACCTACATTTCACAACTCGGTATGGGAAATGCCATACCTACGTTCTTAACTTAGTAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACGTTCACAACTCAGTAT
*
7635824 GGATAATATCATACCTACGTTTCACAACTCAGTATGGAT
66 GGATAATACCATACCTACGTTTCACAACTCAGTATGGAT
* * ** * *
7635863 GATACCATACCTACGTTTCACAACTCAGTATGGTTAATACCATATCTACTTTCACAACTCAGTAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACGTTCACAACTCAGTAT
* * *
7635928 GGATGATACCATACCTACGTTTCACAACTCGGTATGGTT
66 GGATAATACCATACCTACGTTTCACAACTCAGTATGGAT
7635967 AATACCATACCTAC
1 AATACCATACCTAC
7635981 TGTTAGAATT
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
104 102 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (104 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACGTTCACAACTCAGTAT
GGATAATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:7640733 original size:125 final size:126
Alignment explanation
Indices: 7640467--7640753 Score: 310
Period size: 125 Copynumber: 2.3 Consensus size: 126
7640457 TTGGAAGTTT
* * **
7640467 GAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTACATTCAACTGAAATATGGAATACCTT
1 GAGAAATCGTGCCCAATCGTGCTGGGTTTCGA-TTTTTACATTCAACTAAAATACAGAATACCTT
* * * * ** *
7640532 TGTGAAATTTCGTCCACGTTTTCTTAAATTAAAACGAGGCAATATTTTGTGTTCGGGAGTTT
65 TGTGAAATTTCATCCACGTTTTCTTAAATTAAAACGAGGCAATATTCTGTATTCGGAAAATC
* ** *
7640594 GAGAGATCAAGCCCAATCGTGCTGGGTTTCGATTTTT-CATTCGAC-AAAAGTACAGAATATCCT
1 GAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTACATTCAACTAAAA-TACAGAATA-CCT
** * * * *
7640657 TT-TGAAATTTCATTTATGTTTTCTTAAATTAAAATGAGGCAATATTCTGTATTTGTAAAATC
64 TTGTGAAATTTCATCCACGTTTTCTTAAATTAAAACGAGGCAATATTCTGTATTCGGAAAATC
* * *
7640719 GATAAATCGTGCCCAATCGTGCTAGGTTGCGATTT
1 GAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
7640754 ATCGTTTGGC
Statistics
Matches: 133, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
124 3 0.02
125 90 0.68
126 10 0.08
127 30 0.23
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (126 bp):
GAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTACATTCAACTAAAATACAGAATACCTTT
GTGAAATTTCATCCACGTTTTCTTAAATTAAAACGAGGCAATATTCTGTATTCGGAAAATC
Found at i:7648334 original size:30 final size:31
Alignment explanation
Indices: 7648294--7648351 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
7648284 ACTTATAAAT
*
7648294 ATTATTAAAAAATC-TAATAAA-ATTTAATAA
1 ATTATAAAAAAATCATAA-AAATATTTAATAA
*
7648324 ATTATAAAAAATTCATAAAAATATTTAA
1 ATTATAAAAAAATCATAAAAATATTTAA
7648352 AATGTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (31 bp):
ATTATAAAAAAATCATAAAAATATTTAATAA
Found at i:7648353 original size:20 final size:19
Alignment explanation
Indices: 7648331--7648382 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
7648321 TAAATTATAA
7648331 AAAATTCATAAAAA-TATTT
1 AAAATTCATAAAAACT-TTT
7648350 AAAATGTCATAAAAACTTTT
1 AAAAT-TCATAAAAACTTTT
*
7648370 AAAATTCTTAAAA
1 AAAATTCATAAAA
7648383 CAATTATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 12 0.40
20 17 0.57
21 1 0.03
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAATTCATAAAAACTTTT
Found at i:7648354 original size:29 final size:27
Alignment explanation
Indices: 7648289--7648364 Score: 64
Period size: 31 Copynumber: 2.5 Consensus size: 27
7648279 TATATACTTA
7648289 TAAATATTATTAAAAAATCTAATAAAATT
1 TAAA-ATTA-TAAAAAATCTAATAAAATT
7648318 TAATAAATTATAAAAAATTCATAA-AAATATT
1 T-A-AAATTATAAAAAA-TC-TAATAAA-ATT
7648349 TAAAATGTCATAAAAA
1 TAAAAT-T-ATAAAAA
7648365 CTTTTAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
29 12 0.30
30 12 0.30
31 16 0.40
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (27 bp):
TAAAATTATAAAAAATCTAATAAAATT
Found at i:7649059 original size:9 final size:9
Alignment explanation
Indices: 7649042--7649239 Score: 57
Period size: 10 Copynumber: 20.4 Consensus size: 9
7649032 ATTTTAAGTT
7649042 TTTTAATAA
1 TTTTAATAA
7649051 CTTTT-ATAA
1 -TTTTAATAA
7649060 TTTTCAATAA
1 TTTT-AATAA
* *
7649070 TTTCTTATGAT
1 TTT-TAAT-AA
*
7649081 TTTTTATAA
1 TTTTAATAA
*
7649090 GTTTTTAAGAA
1 --TTTTAATAA
* *
7649101 TTTTTATATG
1 TTTTAATA-A
*
7649111 TTTTTATAAGA
1 TTTTAAT-A-A
7649122 TTTTAA-ATA
1 TTTTAATA-A
7649131 TTTTAAATACA
1 TTTT-AATA-A
*
7649142 TTTTATTAA
1 TTTTAATAA
*
7649151 TTTTATAAAA
1 TTTTA-ATAA
7649161 TTTT-ATAA
1 TTTTAATAA
*
7649169 TTTATTAA-CA
1 -TT-TTAATAA
*
7649179 TTTTTATAA
1 TTTTAATAA
*
7649188 TATTATATTAA
1 T-TT-TAATAA
7649199 TTTTGAATAA
1 TTTT-AATAA
7649209 TATTT--TAA
1 T-TTTAATAA
7649217 TATTTAATAA
1 T-TTTAATAA
*
7649227 TTTTCATAA
1 TTTTAATAA
7649236 TTTT
1 TTTT
7649240 GTCCTGATAT
Statistics
Matches: 143, Mismatches: 24, Indels: 43
0.68 0.11 0.20
Matches are distributed among these distances:
8 18 0.13
9 41 0.29
10 51 0.36
11 33 0.23
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (9 bp):
TTTTAATAA
Found at i:7649086 original size:30 final size:30
Alignment explanation
Indices: 7649052--7649125 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 30
7649042 TTTTAATAAC
*
7649052 TTTTATAA-TTTTCAATAATTTCTTATGAT-T
1 TTTTATAAGTTTTCAAGAATTT-TTAT-ATGT
*
7649082 TTTTATAAGTTTTTAAGAATTTTTATATGT
1 TTTTATAAGTTTTCAAGAATTTTTATATGT
7649112 TTTTATAAGATTTT
1 TTTTATAAG-TTTT
7649126 AAATATTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 2 0.05
30 22 0.56
31 15 0.38
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.61
Consensus pattern (30 bp):
TTTTATAAGTTTTCAAGAATTTTTATATGT
Found at i:7649134 original size:30 final size:30
Alignment explanation
Indices: 7649052--7649134 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
7649042 TTTTAATAAC
*
7649052 TTTTAT-A-ATTTTCAATAATTTCTTATGATT
1 TTTTATAAGATTTTAAAT-ATTT-TTATGATT
*
7649082 TTTTATAAGTTTTTAAGA-ATTTTTAT-ATGT
1 TTTTATAAGATTTTAA-ATATTTTTATGAT-T
7649112 TTTTATAAGATTTTAAATATTTT
1 TTTTATAAGATTTTAAATATTTT
7649135 AAATACATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
29 3 0.07
30 31 0.69
31 5 0.11
32 5 0.11
33 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (30 bp):
TTTTATAAGATTTTAAATATTTTTATGATT
Found at i:7649171 original size:18 final size:18
Alignment explanation
Indices: 7649112--7649235 Score: 65
Period size: 19 Copynumber: 6.4 Consensus size: 18
7649102 TTTTATATGT
* *
7649112 TTTTATAAGATTTTAAATA
1 TTTTATAAAATTTTATA-A
7649131 TTTTA-AATACATTTTATTAA
1 TTTTATAA-A-ATTTTA-TAA
7649151 TTTTATAAAATTTTATAA
1 TTTTATAAAATTTTATAA
*
7649169 -TTTATTAACATTTTTATAA
1 TTTTA-TAA-AATTTTATAA
* *
7649188 TATTATATTAATTTTGAATAA
1 TTTTATA-AAATTTT--ATAA
* *
7649209 TATTT-TAATATTTAATAA
1 T-TTTATAAAATTTTATAA
7649227 TTTTCATAA
1 TTTT-ATAA
7649236 TTTTGTCCTG
Statistics
Matches: 82, Mismatches: 10, Indels: 26
0.69 0.08 0.22
Matches are distributed among these distances:
17 7 0.09
18 13 0.16
19 30 0.37
20 20 0.24
21 10 0.12
22 2 0.02
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTTATAAAATTTTATAA
Found at i:7649230 original size:48 final size:48
Alignment explanation
Indices: 7649145--7649236 Score: 109
Period size: 48 Copynumber: 1.9 Consensus size: 48
7649135 AAATACATTT
* *
7649145 TATTAATTTTATAAAATTTTATAATTTATTAACATTTTTATAATATTA
1 TATTAATTTTATAAAATTTTATAATTTAATAACATTTTCATAATATTA
*
7649193 TATTAATTTTGAATAATATTTTA-ATATTTAAT-A-ATTTTCATAAT
1 TATTAATTTT--ATAAAATTTTATA-ATTTAATAACATTTTCATAAT
7649237 TTTGTCCTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
48 20 0.53
49 2 0.05
50 16 0.42
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (48 bp):
TATTAATTTTATAAAATTTTATAATTTAATAACATTTTCATAATATTA
Found at i:7653187 original size:24 final size:23
Alignment explanation
Indices: 7653160--7653219 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
7653150 TGAAAAAAAT
*
7653160 TTTAAATTAAAATTTTGAGTTGAG
1 TTTAAATTAAAAATTTG-GTTGAG
*
7653184 TTT-AATTAAATAAATTTGTTTGAG
1 TTTAAATT-AA-AAATTTGGTTGAG
7653208 -TTAAATTAAAAA
1 TTTAAATTAAAAA
7653220 AATTAATGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
22 3 0.10
23 8 0.26
24 14 0.45
25 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (23 bp):
TTTAAATTAAAAATTTGGTTGAG
Found at i:7655019 original size:16 final size:16
Alignment explanation
Indices: 7654998--7655029 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7654988 ATATATTTTC
*
7654998 TTTTAAACAGTAATTA
1 TTTTAAACAATAATTA
7655014 TTTTAAACAATAATTA
1 TTTTAAACAATAATTA
7655030 GCCCAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (16 bp):
TTTTAAACAATAATTA
Found at i:7662682 original size:39 final size:39
Alignment explanation
Indices: 7662634--7662711 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
7662624 TGTGCCTTTT
*
7662634 ATCCCATTTATATAAGCATTCTCATTACATTAAAGAGGG
1 ATCCCATTTATATAAGCATTCTCATTACACTAAAGAGGG
* *
7662673 ATCCTATTTATATAAGCATTCTCCTTACACTAAAGAGGG
1 ATCCCATTTATATAAGCATTCTCATTACACTAAAGAGGG
7662712 GGATAATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (39 bp):
ATCCCATTTATATAAGCATTCTCATTACACTAAAGAGGG
Found at i:7663143 original size:21 final size:22
Alignment explanation
Indices: 7663105--7663145 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7663095 GCTAATGTGG
*
7663105 GATTCAAATTTAAGTTTTAACA
1 GATTCAAAATTAAGTTTTAACA
*
7663127 GATT-AAAATTAATTTTTAA
1 GATTCAAAATTAAGTTTTAA
7663146 TAATGAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (22 bp):
GATTCAAAATTAAGTTTTAACA
Found at i:7663290 original size:69 final size:69
Alignment explanation
Indices: 7663144--7663292 Score: 185
Period size: 69 Copynumber: 2.2 Consensus size: 69
7663134 ATTAATTTTT
* * * * *
7663144 AATAATGAA-AAGTGAGTTATGGGAGTATTCTCTAGTCAATTTGGGATTAAAATTGACTTTTTAA
1 AATAATGAAGAAGTGAGTTATGAGAGTATTCTCTAGTCAATGTAGGATTAAAATTAAATTTTTAA
* *
7663208 TGAC
66 TAAA
* * *
7663212 TATAGTGAAGAAGTTA-TCTATGAGAGTATTCTCTAGTCAATGTAGGATTAAAATTAAATTTTTA
1 AATAATGAAGAAGTGAGT-TATGAGAGTATTCTCTAGTCAATGTAGGATTAAAATTAAATTTTTA
7663276 ATAAA
65 ATAAA
7663281 AATAATGAAGAA
1 AATAATGAAGAA
7663293 ATTGTCACTT
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
68 8 0.12
69 59 0.88
ACGTcount: A:0.40, C:0.06, G:0.18, T:0.36
Consensus pattern (69 bp):
AATAATGAAGAAGTGAGTTATGAGAGTATTCTCTAGTCAATGTAGGATTAAAATTAAATTTTTAA
TAAA
Found at i:7666545 original size:70 final size:68
Alignment explanation
Indices: 7666410--7666606 Score: 227
Period size: 70 Copynumber: 2.9 Consensus size: 68
7666400 GTGAGATATT
* * * * * * *
7666410 GGAGTGTTGTCTAGCCAATGTAGGATTAAAATTAATTTTTAATGAAAACAGTGAATACGCGAGCT
1 GGAGTATTCTCTAGTCAATGTGGGATTAAAATTAATTTTTAATGAAAATAGTGAAGAAGCGAGCT
7666475 AT-
66 ATA
* * **
7666477 GAGAGTATAT-TTTAGTTAATGTGGGATTAAAATTAACTTTTTTAATGAAAATAGTGAAGAAGTT
1 G-GAGTAT-TCTCTAGTCAATGTGGGATTAAAATTAA--TTTTTAATGAAAATAGTGAAGAAGCG
7666541 AGCTATA
62 AGCTATA
*
7666548 GGAGTATTCTCTAGTCAATGTGGGATTAAAATTAAATTTTTAATAAAAATAGTGAAGAA
1 GGAGTATTCTCTAGTCAATGTGGGATTAAAATT-AATTTTTAATGAAAATAGTGAAGAA
7666607 ATTATCATTT
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
67 1 0.01
68 27 0.25
69 24 0.22
70 55 0.50
71 3 0.03
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (68 bp):
GGAGTATTCTCTAGTCAATGTGGGATTAAAATTAATTTTTAATGAAAATAGTGAAGAAGCGAGCT
ATA
Found at i:7670117 original size:11 final size:11
Alignment explanation
Indices: 7670084--7670117 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7670074 GGCAAACAGT
7670084 AAAGAAATTTA
1 AAAGAAATTTA
*
7670095 AAA-AAGTTTA
1 AAAGAAATTTA
7670105 AAAGAAATTTA
1 AAAGAAATTTA
7670116 AA
1 AA
7670118 CATGTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (11 bp):
AAAGAAATTTA
Found at i:7670289 original size:16 final size:16
Alignment explanation
Indices: 7670270--7670302 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7670260 AAATAATCAG
7670270 TTTTAAAAAAACATAT
1 TTTTAAAAAAACATAT
*
7670286 TTTTAAAAAAATATAT
1 TTTTAAAAAAACATAT
7670302 T
1 T
7670303 ATTAGCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTTAAAAAAACATAT
Found at i:7677414 original size:6 final size:6
Alignment explanation
Indices: 7677403--7677434 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
7677393 GAAAAACCAA
7677403 AGGCAC AGGCAC AGGCAC AGGCAC AGGCAC AG
1 AGGCAC AGGCAC AGGCAC AGGCAC AGGCAC AG
7677435 CTTCCTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00
Consensus pattern (6 bp):
AGGCAC
Found at i:7687954 original size:26 final size:26
Alignment explanation
Indices: 7687925--7688005 Score: 72
Period size: 28 Copynumber: 3.0 Consensus size: 26
7687915 GCCCTTTGAA
* * *
7687925 TCATTTGATATTTTGCACACTAAGTG
1 TCATTTAATATCTCGCACACTAAGTG
7687951 TCATTCTTAATATCTCGCACACTAAGTG
1 TCA-T-TTAATATCTCGCACACTAAGTG
* * *
7687979 CCATTCTCAATATTTCGTACACTAAGT
1 TCATT-T-AATATCTCGCACACTAAGT
7688006 ACCATATTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.09
27 3 0.07
28 38 0.84
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.38
Consensus pattern (26 bp):
TCATTTAATATCTCGCACACTAAGTG
Found at i:7687970 original size:28 final size:28
Alignment explanation
Indices: 7687939--7688010 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
7687929 TTGATATTTT
* *
7687939 GCACACTAAGTGTCATTCTTAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
7687967 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
7687995 GTACACTAAGTACCAT
1 GCACACTAAGTGCCAT
7688011 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:7691030 original size:43 final size:43
Alignment explanation
Indices: 7690982--7691107 Score: 180
Period size: 43 Copynumber: 2.9 Consensus size: 43
7690972 GTTATCGATA
* * *
7690982 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
7691025 TGTGATTACGTGTAAGACCATGTCTGGGACATTGACATCGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
7691068 TATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
7691108 ACATGTGATA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:7695888 original size:43 final size:40
Alignment explanation
Indices: 7695822--7695935 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 40
7695812 AGCTCGTACA
** * * *
7695822 ATGCCAATGTCCCAGATGTGGTCTTACATGTAATCAAATATC
1 ATGCC-ATGTCCCAGACATGGTCTTACACGAAATAAAATA-C
*
7695864 GATGCCATTGTCCCAGACAAGGTCTTACACGAAATAAAATAC
1 -ATGCCA-TGTCCCAGACATGGTCTTACACGAAATAAAATAC
*
7695906 AGTACCGATGTCCCAGACATGGTCTTACAC
1 A-TGCC-ATGTCCCAGACATGGTCTTACAC
7695936 ATAAATCTCA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 33 0.55
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATAAAATAC
Found at i:7697591 original size:125 final size:125
Alignment explanation
Indices: 7697258--7697652 Score: 476
Period size: 127 Copynumber: 3.1 Consensus size: 125
7697248 GGCCAAACAT
* * *
7697258 GAACTACCGTAGAAAAA-AAGCATCCACGA-GGGAGCTTTTTTCATAAATTTTGCTGACAGTGCA
1 GAACTACTGTAGAAAAAGAA-CGTCCAC-ATGGGAGCTTTTTTCAT-AATTTTGCTGACAATGCA
* * * * * *
7697321 CCCTACTTCAAGCGTTTTTGACACCATTTATTCAGAACTGTCTTCTCAAAATTATTTTTTTTAG
63 TCCTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTA-TTTTTTTAG
* * * *
7697385 GAACTACTGTAGAAAAATAACGTCCACTTAGGAGCTTTTTTCAATATTTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAACGTCCACATGGGAGCTTTTTTC-ATAATTTTGCTGACAATGCATC
* *
7697450 CTGCTTAAAGTGTTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTATTTTTTTAG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTTAG
* * *
7697511 GAATTACTGTAGAAGAAGAGCGTCCACATGGGAG-TTTTTTCAGTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAACGTCCACATGGGAGCTTTTTTCA-TAATTTTGCTGACAATGCATC
* * * *
7697575 ATGCTTGAAGCATTTTTGACATTATCTTGTT-AGAACCGTCTTCTCAAAATTATTTTTTCT-G
65 CTGCTTAAAGCGTTTTTGACACTAT-TTGTTCAGAACCGTCTTCTCAAAATTATTTTTT-TAG
*
7697636 AAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
7697653 AAAAGCAAAA
Statistics
Matches: 232, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
124 1 0.00
125 88 0.38
126 43 0.19
127 96 0.41
128 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAACGTCCACATGGGAGCTTTTTTCATAATTTTGCTGACAATGCATCC
TGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTTAG
Found at i:7697796 original size:68 final size:68
Alignment explanation
Indices: 7697723--7697850 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
7697713 ACAAAATTAT
* *
7697723 TTTAAAAAAACTAAACCCTAATTTAATTAATTTTCTTT-AAAACTTTAAACCCTAATTTAACTTA
1 TTTAAAAAAACTAAAACCTAATTTAATT-ATTTTCTTTAAAAACTCTAAACCCTAATTTAACTTA
7697787 TTTA
65 TTTA
*** * *
7697791 TTTAAAACCCCTAAAACCTAATTTAATTATTTTTTTTAAAAAACTCTAAATCCTAATTTA
1 TTTAAAAAAACTAAAACCTAATTTAATTATTTTCTTT-AAAAACTCTAAACCCTAATTTA
7697851 TTTTTTAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 8 0.16
68 24 0.47
69 19 0.37
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (68 bp):
TTTAAAAAAACTAAAACCTAATTTAATTATTTTCTTTAAAAACTCTAAACCCTAATTTAACTTAT
TTA
Found at i:7697840 original size:35 final size:34
Alignment explanation
Indices: 7697722--7697850 Score: 136
Period size: 34 Copynumber: 3.8 Consensus size: 34
7697712 GACAAAATTA
**
7697722 TTTTAAAAAAACTAAACCCTAATTTAATTAATTTT
1 TTTTAAAAACTCTAAACCCTAATTTAATT-ATTTT
* *
7697757 CTTT-AAAACTTTAAACCCTAATTTAACTTA-TTT
1 TTTTAAAAACTCTAAACCCTAATTTAA-TTATTTT
* * * *
7697790 ATTTAAAACCCCTAAAACCTAATTTAATTATTTT
1 TTTTAAAAACTCTAAACCCTAATTTAATTATTTT
*
7697824 TTTTAAAAAACTCTAAATCCTAATTTA
1 TTTT-AAAAACTCTAAACCCTAATTTA
7697851 TTTTTTAAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
33 9 0.12
34 44 0.57
35 24 0.31
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.43
Consensus pattern (34 bp):
TTTTAAAAACTCTAAACCCTAATTTAATTATTTT
Found at i:7697910 original size:34 final size:33
Alignment explanation
Indices: 7697865--7697965 Score: 150
Period size: 34 Copynumber: 3.0 Consensus size: 33
7697855 TTAAAATTCT
7697865 ACCCTACACCTAAATTATTTTAACAAAACTTTAA
1 ACCCTA-ACCTAAATTATTTTAACAAAACTTTAA
**
7697899 ACCCTGAACCTAAATTATTTTAACAAAACCCT-A
1 ACCCT-AACCTAAATTATTTTAACAAAACTTTAA
7697932 ACCCTAACCCTAAATTATTTTAACAAAACTTTAA
1 ACCCTAA-CCTAAATTATTTTAACAAAACTTTAA
7697966 CCTTAAACCT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
32 2 0.03
33 28 0.47
34 29 0.48
35 1 0.02
ACGTcount: A:0.44, C:0.25, G:0.01, T:0.31
Consensus pattern (33 bp):
ACCCTAACCTAAATTATTTTAACAAAACTTTAA
Found at i:7697967 original size:33 final size:33
Alignment explanation
Indices: 7697865--7697967 Score: 147
Period size: 33 Copynumber: 3.1 Consensus size: 33
7697855 TTAAAATTCT
7697865 ACCCT-ACACCTAAATTATTTTAACAAAACTTTAA
1 ACCCTAAC-CCTAAATTATTTTAACAAAACTTT-A
**
7697899 ACCCTGAA-CCTAAATTATTTTAACAAAACCCTA
1 ACCCT-AACCCTAAATTATTTTAACAAAACTTTA
7697932 ACCCTAACCCTAAATTATTTTAACAAAACTTTA
1 ACCCTAACCCTAAATTATTTTAACAAAACTTTA
7697965 ACC
1 ACC
7697968 TTAAACCTTG
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
32 2 0.03
33 32 0.52
34 27 0.44
36 1 0.02
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.30
Consensus pattern (33 bp):
ACCCTAACCCTAAATTATTTTAACAAAACTTTA
Found at i:7702239 original size:22 final size:22
Alignment explanation
Indices: 7702196--7702240 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7702186 CACATTTGGG
* *
7702196 AAAATCTTATAATATTTTTAAA
1 AAAATCTTATAATAATTCTAAA
7702218 AAAATCTCTATAA-AATTCTAAA
1 AAAATCT-TATAATAATTCTAAA
7702240 A
1 A
7702241 CTTTAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATCTTATAATAATTCTAAA
Found at i:7704380 original size:13 final size:13
Alignment explanation
Indices: 7704362--7704388 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7704352 GCTCGGCAGG
7704362 GACACGCCCGTGT
1 GACACGCCCGTGT
7704375 GACACGCCCGTGT
1 GACACGCCCGTGT
7704388 G
1 G
7704389 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:7705300 original size:9 final size:9
Alignment explanation
Indices: 7705286--7705315 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7705276 TATACATAGT
7705286 TTTTATTTC
1 TTTTATTTC
7705295 TTTTATTTC
1 TTTTATTTC
*
7705304 TTTTTTTTC
1 TTTTATTTC
7705313 TTT
1 TTT
7705316 AAGAACAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTATTTC
Found at i:7708025 original size:230 final size:230
Alignment explanation
Indices: 7707622--7708085 Score: 802
Period size: 230 Copynumber: 2.0 Consensus size: 230
7707612 GTCAACTGCT
* * *
7707622 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATGGGCCCATGAAATCGATACCCCAGACGTT
1 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCCATGAAATCGATACCCCAAACGTC
* *
7707687 AAATATTTCACATGAAATCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTGTCC
66 AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
* *
7707752 GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAATAAGAA
131 GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
*
7707817 CCTGATTCAAGTACTTTGTGTGTGGTCTTAGTTCC
196 CCTGATTCAAGTACTTTGTGTGCGGTCTTAGTTCC
*
7707852 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCTATGAAATCGATACCCCAAACGTC
1 ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCCATGAAATCGATACCCCAAACGTC
*
7707917 AAATATTTTACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
66 AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
* * *
7707982 GTTGGCATTTGTCACATGAAGTAATATACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
131 GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
*
7708047 CCTGATTCAAGTATTTTGTGTGCGGTCTTAGTTCC
196 CCTGATTCAAGTACTTTGTGTGCGGTCTTAGTTCC
7708082 ACTA
1 ACTA
7708086 TAGTGTCCTC
Statistics
Matches: 220, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
230 220 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (230 bp):
ACTAAGATGTATTTATTCCCAAATGAACTGGGGAATAGGCCCATGAAATCGATACCCCAAACGTC
AAATATTTCACATGAAAGCATATAGTTTTGAGGCATTTCATCACGTTTAGATATGTTACCTATCC
GTTGGCATTTGTCACATAAAGTAACACACCTGATAGCGTCTTTGAATAACGAAGGCCAAAAAAAA
CCTGATTCAAGTACTTTGTGTGCGGTCTTAGTTCC
Found at i:7718068 original size:24 final size:24
Alignment explanation
Indices: 7718034--7718085 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7718024 TTTCTAGAAG
* *
7718034 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
* *
7718058 ATTTAGCATTTGTTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
7718082 ATTT
1 ATTT
7718086 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:7719800 original size:24 final size:19
Alignment explanation
Indices: 7719751--7719795 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
7719741 CAATCAAATT
7719751 ATAAAATTTAATATTTTTA
1 ATAAAATTTAATATTTTTA
7719770 ATAAAATTTAATATTTTTA
1 ATAAAATTTAATATTTTTA
*
7719789 ATTAAAT
1 ATAAAAT
7719796 AAAATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAAAATTTAATATTTTTA
Found at i:7719820 original size:19 final size:19
Alignment explanation
Indices: 7719754--7719820 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
7719744 TCAAATTATA
*
7719754 AAATTTAATATTTTTAATA
1 AAATTTAATATTTTTAATT
7719773 AAATTTAATATTTTTAATT
1 AAATTTAATATTTTTAATT
** **
7719792 AAATAAAATATTTAAAATT
1 AAATTTAATATTTTTAATT
*
7719811 AAGTTTAATA
1 AAATTTAATA
7719821 AAATTTAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (19 bp):
AAATTTAATATTTTTAATT
Found at i:7721033 original size:8 final size:8
Alignment explanation
Indices: 7721020--7721048 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7721010 TTTGGATATA
7721020 TATATAGT
1 TATATAGT
7721028 TATATAGT
1 TATATAGT
7721036 TATATAGT
1 TATATAGT
7721044 TATAT
1 TATAT
7721049 GGTACATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (8 bp):
TATATAGT
Found at i:7723739 original size:2 final size:2
Alignment explanation
Indices: 7723732--7723757 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7723722 ACTCCACTAA
7723732 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
7723758 AGGAGGGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7725130 original size:29 final size:29
Alignment explanation
Indices: 7725097--7725184 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
7725087 AATGTATTTC
7725097 AATATTTTCAATAAATTTTATTATTAACA
1 AATATTTTCAATAAATTTTATTATTAACA
* *
7725126 AATA-TTTGAATTAAA---TA-T-TTAA-T
1 AATATTTTCAA-TAAATTTTATTATTAACA
*
7725149 AATATTTTCAA-CAATCTTTATTATTAACA
1 AATATTTTCAATAAAT-TTTATTATTAACA
7725178 AATATTT
1 AATATTT
7725185 GAATTAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 18
0.66 0.07 0.26
Matches are distributed among these distances:
22 2 0.04
23 4 0.09
24 9 0.20
25 1 0.02
26 4 0.09
27 1 0.02
28 9 0.20
29 15 0.33
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (29 bp):
AATATTTTCAATAAATTTTATTATTAACA
Found at i:7725616 original size:19 final size:19
Alignment explanation
Indices: 7725592--7725660 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
7725582 ATTATATTTT
7725592 ATCATAAAAATTGTTAAAA
1 ATCATAAAAATTGTTAAAA
* *
7725611 ATCATAAAAAATATTAAAA
1 ATCATAAAAATTGTTAAAA
* *
7725630 TTGATAAAAATTCG-TAAAA
1 ATCATAAAAATT-GTTAAAA
* *
7725649 CTTATAAAAATT
1 ATCATAAAAATT
7725661 ATAAAATTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (19 bp):
ATCATAAAAATTGTTAAAA
Found at i:7725639 original size:10 final size:9
Alignment explanation
Indices: 7725595--7725671 Score: 64
Period size: 9 Copynumber: 8.2 Consensus size: 9
7725585 ATATTTTATC
7725595 ATAAAAATT
1 ATAAAAATT
* *
7725604 GTTAAAAATC
1 -ATAAAAATT
*
7725614 ATAAAAAAT
1 ATAAAAATT
*
7725623 ATTAAAATT
1 ATAAAAATT
7725632 GATAAAAATT
1 -ATAAAAATT
* *
7725642 CGTAAAACTT
1 -ATAAAAATT
7725652 ATAAAAATT
1 ATAAAAATT
*
7725661 ATAAAATTT
1 ATAAAAATT
7725670 AT
1 AT
7725672 TATAAAGTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
9 30 0.58
10 22 0.42
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:7726676 original size:22 final size:21
Alignment explanation
Indices: 7726630--7726683 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
7726620 ATTAATCATA
*
7726630 TTTAT-ACTTTTTTTATGTATC
1 TTTATAAC-TTTTTTATGAATC
7726651 -TTATAACTTTTTTATGAATC
1 TTTATAACTTTTTTATGAATC
7726671 TTTTATAA-TTTTT
1 -TTTATAACTTTTT
7726684 AAAAGTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 16 0.55
21 7 0.24
22 6 0.21
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTATAACTTTTTTATGAATC
Found at i:7726732 original size:18 final size:16
Alignment explanation
Indices: 7726700--7726770 Score: 54
Period size: 18 Copynumber: 4.1 Consensus size: 16
7726690 TTATAGAAAG
7726700 TTTTTAATATTTTTTA
1 TTTTTAATATTTTTTA
7726716 TTTTTAATATATCTTTTAA
1 TTTTTAATAT-T-TTTT-A
*
7726735 GTTTTT-ATGATTTTTAA
1 -TTTTTAAT-ATTTTTTA
*
7726752 TTTTTTTATAGTTTTTTA
1 -TTTTTAATA-TTTTTTA
7726770 T
1 T
7726771 GAGAAATAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 10 0.22
17 9 0.20
18 15 0.33
19 4 0.09
20 7 0.16
ACGTcount: A:0.24, C:0.01, G:0.04, T:0.70
Consensus pattern (16 bp):
TTTTTAATATTTTTTA
Found at i:7735743 original size:19 final size:19
Alignment explanation
Indices: 7735719--7735755 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7735709 GGCAAAAATT
*
7735719 AAATACTATTAAATTAATA
1 AAATACTATTAAAATAATA
7735738 AAATACTATTAAAATAAT
1 AAATACTATTAAAATAAT
7735756 TATTAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
AAATACTATTAAAATAATA
Found at i:7745495 original size:16 final size:16
Alignment explanation
Indices: 7745471--7745509 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7745461 TTTCATTAAG
*
7745471 AAAACCAGTTAAACCA
1 AAAATCAGTTAAACCA
7745487 AAAATCAGTTAAACCA
1 AAAATCAGTTAAACCA
7745503 AAAATCA
1 AAAATCA
7745510 TGCTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.59, C:0.21, G:0.05, T:0.15
Consensus pattern (16 bp):
AAAATCAGTTAAACCA
Found at i:7745516 original size:17 final size:16
Alignment explanation
Indices: 7745480--7745516 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
7745470 GAAAACCAGT
*
7745480 TAAACCAAAAATCAGT
1 TAAACCAAAAATCAGC
7745496 TAAACCAAAAATCATGC
1 TAAACCAAAAATCA-GC
7745513 TAAA
1 TAAA
7745517 AAAATCAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.57, C:0.19, G:0.05, T:0.19
Consensus pattern (16 bp):
TAAACCAAAAATCAGC
Found at i:7750657 original size:46 final size:46
Alignment explanation
Indices: 7750584--7751035 Score: 674
Period size: 46 Copynumber: 9.8 Consensus size: 46
7750574 TGATGTCATA
* * * * * *
7750584 GTATCTTTCAGCTATGGTTTTACTCATTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATG
** ***
7750630 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGG-TGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GGTTGCCATG
* *
7750677 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
** *
7750723 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
7750769 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
* *
7750815 GTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
7750861 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
* *
7750907 GTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
7750953 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
7750999 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7751036 ATAGCACACT
Statistics
Matches: 379, Mismatches: 24, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
45 2 0.01
46 340 0.90
47 36 0.09
48 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
Found at i:7756981 original size:22 final size:22
Alignment explanation
Indices: 7756953--7756994 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7756943 GAGGTAGGAA
7756953 TCTGCATCTGTATCTGATATGT
1 TCTGCATCTGTATCTGATATGT
*
7756975 TCTGCATCTGTATTTGATAT
1 TCTGCATCTGTATCTGATAT
7756995 TCTCTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (22 bp):
TCTGCATCTGTATCTGATATGT
Found at i:7758643 original size:46 final size:46
Alignment explanation
Indices: 7758589--7758703 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
7758579 CGAGCTTTTA
*
7758589 CATATGTTGTGGACTTGAGAATACAAGTATAGGTTCTGAGCT-CTAG
1 CATATGTTGTGGACTTGAGAATACAAGTATAGGTTCCGAGCTCCT-G
* * * *
7758635 CA-AGTGTTGCGGACTCGAGAATACAGGTTTAGGTTCCGAGCTCCTG
1 CATA-TGTTGTGGACTTGAGAATACAAGTATAGGTTCCGAGCTCCTG
7758681 CATATGTTGCT-GACTTGAGAATA
1 CATATGTTG-TGGACTTGAGAATA
7758704 TAGGAATATT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.02
46 54 0.93
47 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (46 bp):
CATATGTTGTGGACTTGAGAATACAAGTATAGGTTCCGAGCTCCTG
Found at i:7761403 original size:47 final size:46
Alignment explanation
Indices: 7761285--7761411 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 46
7761275 GGATGGTTGA
* *
7761285 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGAAT
*
7761333 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAA-T
7761376 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGT
7761412 TTATGGGCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 11
0.84 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 31 0.44
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAAT
Found at i:7771455 original size:3 final size:3
Alignment explanation
Indices: 7771441--7771477 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7771431 AAATTAAGAT
*
7771441 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7771478 AGAAACAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7772404 original size:3 final size:3
Alignment explanation
Indices: 7772391--7772433 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
7772381 TGAACTCCTC
*
7772391 TGA TTA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
7772434 TCTGGTGATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.37
Consensus pattern (3 bp):
TGA
Found at i:7775079 original size:13 final size:15
Alignment explanation
Indices: 7775057--7775089 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
7775047 TATTTTAATT
7775057 TTTTCTTTTTGT-TA
1 TTTTCTTTTTGTATA
7775071 TTTTC-TTTTGTATA
1 TTTTCTTTTTGTATA
7775085 TTTTC
1 TTTTC
7775090 ATTCTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTCTTTTTGTATA
Found at i:7776128 original size:125 final size:125
Alignment explanation
Indices: 7775906--7776139 Score: 301
Period size: 125 Copynumber: 1.9 Consensus size: 125
7775896 AAAAAACCTC
* * * *
7775906 TTAAAACGAGGCAATATTTCGTATTTAGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCG
1 TTAAAACGACGCAATATTTCGTATTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCG
* ** *
7775971 ATTTTTCATTCGACTAAAATACAGAATATCCTTTTGAAATTTCATCTATGTTTTCTTAAA
66 ATCTACCATTCGACTAAAATACAGAATATCCTTTTAAAATTTCATCTATGTTTTCTTAAA
* * *
7776031 TTAAAATGACGCAATATTTCGTATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGGTTTCG
1 TTAAAACGACGCAATATTTCGTATTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCG
* * * *
7776096 ATCTACCGTTTGGC-CAAATAGCCA-AATATCCTTTTAAAATTTCA
66 ATCTACCATTCGACTAAAATA--CAGAATATCCTTTTAAAATTTCA
7776140 AATGCATGAG
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
124 5 0.05
125 85 0.92
126 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
TTAAAACGACGCAATATTTCGTATTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCG
ATCTACCATTCGACTAAAATACAGAATATCCTTTTAAAATTTCATCTATGTTTTCTTAAA
Found at i:7781955 original size:233 final size:231
Alignment explanation
Indices: 7781514--7781980 Score: 889
Period size: 233 Copynumber: 2.0 Consensus size: 231
7781504 CTGAGCAGAA
*
7781514 TAGGATTGTTTCTTTGGGCTTTTGTCAAGAATACCAGCCAAACAAGATGACAATTAATACGTCAG
1 TAGGATTGTTTCTTTGGGCTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCAG
*
7781579 TGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAATGGGCATTTCTCATGA
66 TGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAGGGGCATTTCTCATGA
7781644 CATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGAT
131 CATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGAT
7781709 CATAGCATCCTAATTATTTGGCATAAGTATCACATC
196 CATAGCATCCTAATTATTTGGCATAAGTATCACATC
*
7781745 TAGGATTGTTTCTTTGGGTTTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCA
1 TAGGATTGTTTCTTTGGG-CTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCA
7781810 GTGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAAGGGGCATTTCTCAT
65 GTGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCAT-AAAAAAGGGGCATTTCTCAT
7781875 GACATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTG
129 GACATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTG
7781940 ATCATAGCATCCTAATTATTTGGCATAAGTATCACATC
194 ATCATAGCATCCTAATTATTTGGCATAAGTATCACATC
7781978 TAG
1 TAG
7781981 CTAGGAGCAT
Statistics
Matches: 231, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
231 18 0.08
232 88 0.38
233 125 0.54
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (231 bp):
TAGGATTGTTTCTTTGGGCTTTTGTCAAGAATACCAGCCAAACAAGATGAAAATTAATACGTCAG
TGATAAGACCCTGATGAATAATGAGTGATGACACTTTAAGCATAAAAAAGGGGCATTTCTCATGA
CATTTTACATTCATACCAATGTCATTCATAGTACATCTAGTTAAGAGCATTTGATTCATTTTGAT
CATAGCATCCTAATTATTTGGCATAAGTATCACATC
Found at i:7781992 original size:64 final size:64
Alignment explanation
Indices: 7781909--7782032 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
7781899 CATTCATAGT
* *
7781909 ACATCTAGTTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAGTATC
1 ACATCTAGCTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAAATATTTGGCATAAGTATC
* *
7781973 ACATCTAGCTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAAATGTTTGGCATAAG
1 ACATCTAGCTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAAATATTTGGCATAAG
7782033 CATATATACA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (64 bp):
ACATCTAGCTAAGAGCATTTGATTCATTTTGATCATAGCATCCTAAATATTTGGCATAAGTATC
Found at i:7782320 original size:45 final size:45
Alignment explanation
Indices: 7782263--7782356 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
7782253 AGTTGCAGGA
* *
7782263 AGCAGACTGAAAATTAC-AGATCTTATCTCCATGTATCGGCTATAG
1 AGCAGACTGAAAATGACGAG-TCTTATCTCCATGTATAGGCTATAG
* *
7782308 AGCAGA-TCGAAAATGGCGAGTCTTATCTCCATGTATAGGCTATGG
1 AGCAGACT-GAAAATGACGAGTCTTATCTCCATGTATAGGCTATAG
7782353 AGCA
1 AGCA
7782357 AATTTTAGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 1 0.02
45 40 0.93
46 2 0.05
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (45 bp):
AGCAGACTGAAAATGACGAGTCTTATCTCCATGTATAGGCTATAG
Found at i:7782421 original size:133 final size:133
Alignment explanation
Indices: 7782140--7782401 Score: 359
Period size: 133 Copynumber: 2.0 Consensus size: 133
7782130 AACAGGCTTC
*
7782140 AAATTATAGATCTTATCTCCATGTATCAGCTATGAAGCAGATCAGAAATGGCGAGTCTTATCTCC
1 AAATTACAGATCTTATCTCCATGTATCAGCTATGAAGCAGATCAGAAATGGCGAGTCTTATCTCC
* * **** * *
7782205 ATGTATCGGGTATGGAACAAATTTTAGCCACTGGTGTTATCCTCCTGAAGTTGCAGGAAGCAGAC
66 ATGTATAGGCTATGGAACAAATTTTAGCCACTAACCTTATCCTCCTGAAGTAGCAAGAAGCAGAC
7782270 TGA
131 TGA
*
7782273 AAATTACAGATCTTATCTCCATGTATCGGCTAT-AGAGCAGATC-GAAAATGGCGAGTCTTATCT
1 AAATTACAGATCTTATCTCCATGTATCAGCTATGA-AGCAGATCAG-AAATGGCGAGTCTTATCT
* *
7782336 CCATGTATAGGCTATGGAGCAAATTTTAGCCACTAACCTTAT-CTCTCTGAGGTAGCAAGAGAGC
64 CCATGTATAGGCTATGGAACAAATTTTAGCCACTAACCTTATCCTC-CTGAAGTAGCAAGA-AGC
7782400 AG
127 AG
7782402 GTTAAAGATA
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
132 5 0.04
133 103 0.91
134 5 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (133 bp):
AAATTACAGATCTTATCTCCATGTATCAGCTATGAAGCAGATCAGAAATGGCGAGTCTTATCTCC
ATGTATAGGCTATGGAACAAATTTTAGCCACTAACCTTATCCTCCTGAAGTAGCAAGAAGCAGAC
TGA
Found at i:7782453 original size:177 final size:175
Alignment explanation
Indices: 7782241--7783112 Score: 1117
Period size: 177 Copynumber: 4.9 Consensus size: 175
7782231 GCCACTGGTG
7782241 TTATCCTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTATCCTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* * *
7782306 AGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATAGGCTATGGAGCAAATTTTAGCCACTA
66 -GAGCAGATC-AAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTG
* *
7782371 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTC
129 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
** * *
7782418 TTATTTTCCTGAAATTGTAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTATCCTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* **
7782483 GGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCA
66 -GAGCAGAT-CAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTG
* *
7782548 ACCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTC
129 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
*
7782595 TTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATCCTCCTGAAGTTGCAGGAAGCAGACTG-AAAATTACAGATCTTATCTCCATGTATCGGCTA
* *
7782660 TGAAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCTGCTATGGAGCAGATTTTAGCCAAC
65 TG-AGCAGATCA-AAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC-AC
* *
7782725 -GACCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATACGAGCC
127 TGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* * **** * *
7782773 TTAACCCCCT-AAGCAATAGGGTAA-TAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCT
1 TTATCCTCCTGAAGTTGCA-GG-AAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
* * * *
7782836 ATGGAGTAGATAAAAAATGGAGAGTCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCAC
64 AT-GAGCAGAT-CAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
* * * **
7782901 TGGCATTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGGGCC
127 TGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* * * * *
7782950 TTAACC-CCT-AAGTAGTAGGGTAA-CAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCT
1 TTATCCTCCTGAAGTTGCA-GG-AAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
* * *
7783012 ATGAAGCAGATCAGAAATGGCAAGTCTTATCTCCATGTCTCGGCTATGGAGCAGATTTTAGCCGC
64 ATG-AGCAGATCA-AAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
* * * * *
7783077 GGGCCTTATCTATCTGAGGTAGCAAAATAGCAGGTT
127 TGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
7783113 AAAGGTATGA
Statistics
Matches: 624, Mismatches: 59, Indels: 25
0.88 0.08 0.04
Matches are distributed among these distances:
175 2 0.00
176 138 0.22
177 333 0.53
178 147 0.24
179 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (175 bp):
TTATCCTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GAGCAGATCAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGAC
CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
Found at i:7782668 original size:46 final size:45
Alignment explanation
Indices: 7782615--7782714 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
7782605 GAAGTTGCAG
* *
7782615 GAAGCAGACTGAAAAATTAC-AGATCTTATCTCCATGTATCGGCTAT
1 GAAGCAGA-TCAAAAATGACGA-ATCTTATCTCCATGTATCGGCTAT
* * *
7782661 GAAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCTGCTAT
1 GAAGCAGATCAAAAATGACGAATCTTATCTCCATGTATCGGCTAT
*
7782706 GGAGCAGAT
1 GAAGCAGAT
7782715 TTTAGCCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 38 0.81
46 9 0.19
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (45 bp):
GAAGCAGATCAAAAATGACGAATCTTATCTCCATGTATCGGCTAT
Found at i:7782807 original size:355 final size:354
Alignment explanation
Indices: 7782241--7783170 Score: 1272
Period size: 355 Copynumber: 2.6 Consensus size: 354
7782231 GCCACTGGTG
7782241 TTATCCTCCTGAAGTTGCAGGAAGCAGACTG-AAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTAT-CTCCTGAAGTTGCAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * *
7782305 T-AGAGCAGATC-GAAAATGGCGAGTCTTATCTCCATGTATAGGCTATGGAGCAAATTTTAGCCA
65 TGA-AGCAGATCAG-AAATGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
** * * **** *
7782368 CTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTCTTATTTTCCT--GAA
128 CGGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACGAGCCTTAACCCCCTAAGCA
* * *
7782431 ATTGTAGG-AAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAA
193 ATAG--GGTAA-TAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAA
* * *
7782495 AAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTT
255 AAATGGAGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACATTATCTCTC
* *
7782560 TGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTC
320 TAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGCC
7782595 TTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 TTATC-TCCTGAAGTTGCAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTA
*
7782660 TGAAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCTGCTATGGAGCAGATTTTAGCCAAC
65 TGAAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC-AC
* *
7782725 -GACCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAA
129 GGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACGAGCCTTAACCCCCTAAGCAA
*
7782789 TAGGGTAATAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATAAAAAAT
194 TAGGGTAATAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAAAT
* ***
7782854 GGAGAGTCTTATCTTCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGCATTATCTCTCTAAG
259 GGAGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACATTATCTCTCTAAG
**
7782919 GTAGCAAGAGAGCAGGTTGAAGATACGGGCC
324 GTAGCAAGAGAGCAGGTTGAAGATACAAGCC
* * * * *
7782950 TTAACCCCT-AAGTAGTAGGGTAA-CAGGCT-AAAAATTACAGATCTTATCTCCATGTATCGGCT
1 TTATCTCCTGAAGTTGCA-GG-AAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCT
* *
7783012 ATGAAGCAGATCAGAAATGGC-AAGTCTTATCTCCATGTCTCGGCTATGGAGCAGATTTTAGCCG
64 ATGAAGCAGATCAGAAATGGCGAA-TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
* * * * * *
7783076 CGGGCCTTATCTATCTGAGGTAGCAAAATAGCAGGTTAAAGGTATGAGCCTTAACCCCCTAAGCA
128 CGGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACGAGCCTTAACCCCCTAAGCA
*
7783141 GTAGGGTAATAGGCTGGAAAA-TACAGATCT
193 ATAGGGTAATAGGCT-GAAAATTACAGATCT
7783171 CCCCTAAAAA
Statistics
Matches: 517, Mismatches: 46, Indels: 27
0.88 0.08 0.05
Matches are distributed among these distances:
352 3 0.01
353 176 0.34
354 44 0.09
355 283 0.55
356 6 0.01
357 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (354 bp):
TTATCTCCTGAAGTTGCAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GAAGCAGATCAGAAATGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACGG
ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACGAGCCTTAACCCCCTAAGCAATA
GGGTAATAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAAAAAATGG
AGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACATTATCTCTCTAAGGT
AGCAAGAGAGCAGGTTGAAGATACAAGCC
Found at i:7783275 original size:84 final size:84
Alignment explanation
Indices: 7783122--7783594 Score: 553
Period size: 84 Copynumber: 5.6 Consensus size: 84
7783112 TAAAGGTATG
* *
7783122 AGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTCCCCTAAA-AAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTCCCTAAACAA-TAGT
7783186 GGAGCAGATCGAAGATAGCA
65 GGAGCAGATCGAAGATAGCA
* * * * * * *
7783206 AGCCTTAACCTCCTAAGTAGTAGGGTAGCAGGTTGGGAAATACAGATCTTCGCTAAACAATAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTCCCTAAACAATAGTG
* *
7783271 GAGCAGATCGAAGACAGTA
66 GAGCAGATCGAAGATAGCA
* * *
7783290 AGCCTTAACCCCCTACGCAGTAGGGTAACAGGCTGAAAAATACAGAT-TTCCCCTAAACAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTT-CCCTAAACAATAGT
7783354 GGAGCAGATCGAAGATAGCA
65 GGAGCAGATCGAAGATAGCA
* * *
7783374 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGATC-TCCCTTAAGCACTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTCCC-TAAACAATAGT
* * **
7783438 GAAGCAGATCGAAGATGGTG
65 GGAGCAGATCGAAGATAGCA
* * * *
7783458 AGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGC-AGAAGATTACAGATCTTATCTGCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAA-AATACAGATC-T-TC--CCTAAACAA
* * *
7783521 TAGTGGAGCAGATCAAAGACAGTA
61 TAGTGGAGCAGATCGAAGATAGCA
* *
7783545 AGCCTTACCCCCCTAAGCAGTAGGGAAACAGGCT-GAAAATTACAGATCTT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAA-TACAGATCTT
7783595 ATCTCCCTAA
Statistics
Matches: 332, Mismatches: 44, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
82 2 0.01
83 38 0.11
84 217 0.65
85 2 0.01
86 3 0.01
87 34 0.10
88 36 0.11
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (84 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTTCCCTAAACAATAGTG
GAGCAGATCGAAGATAGCA
Found at i:7783315 original size:168 final size:168
Alignment explanation
Indices: 7783122--7783593 Score: 612
Period size: 168 Copynumber: 2.8 Consensus size: 168
7783112 TAAAGGTATG
* *
7783122 AGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTCCCCTAAAAAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
* * * *
7783187 GAGCAGATCGAAGATAGCAAGCCTTAACCTCCTAAGTAGTAGGGTAGCAGGTTGGGAAATACAGA
66 GAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGA
*
7783252 TCTTCGC-TAAACAATAGT-AGAGCAGATCGAAGACAGTA
131 TC-TCCCTTAAACAATAGTGA-AGCAGATCGAAGACAGTA
* * *
7783290 AGCCTTAACCCCCTACGCAGTAGGGTAACAGGCTGAAAAATACAGATTTCCCCTAAACAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
7783355 GAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGA
66 GAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGA
* * ** *
7783420 TCTCCCTTAAGCACTAGTGAAGCAGATCGAAGATGGTG
131 TCTCCCTTAAACAATAGTGAAGCAGATCGAAGACAGTA
* * * *
7783458 AGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGC-AGAAGATTACAGATCTTATCTGCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAA-AATACAGATC---TC-CCCTAAACAG
* * * * * *
7783521 TAGTGGAGCAGATCAAAGACAGTAAGCCTTACCCCCCTAAGCAGTAGGGAAACAGGCT-GAAAAT
61 TAGTGGAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAA-
7783585 TACAGATCT
125 TACAGATCT
7783594 TATCTCCCTA
Statistics
Matches: 268, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
166 2 0.01
167 34 0.13
168 155 0.58
169 1 0.00
170 6 0.02
171 70 0.26
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (168 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAGTG
GAGCAGATCGAAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGA
TCTCCCTTAAACAATAGTGAAGCAGATCGAAGACAGTA
Found at i:7783401 original size:252 final size:258
Alignment explanation
Indices: 7783122--7783621 Score: 685
Period size: 252 Copynumber: 2.0 Consensus size: 258
7783112 TAAAGGTATG
* *
7783122 AGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTCCCCTAAAAAGTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAAAACTAGTG
* * * **
7783187 GAGCAGATCGAAGATAGCAAGCCTTAACCTCCTAAGTAGTAGGGTAGCAGGTTGGGAA-A-TACA
66 AAGCAGATCGAAGATAGCAAGCCTTAACC-CCTAAGCAGTAGGGTAACAGG--CAGAAGATTACA
* *
7783250 GATC-T-TC-G-CTAAACAATAGTAGAGCAGATCGAAGACAGTAAGCCTTAACCCCCTACGCAGT
128 GATCTTATCTGCCTAAACAATAGTAGAGCAGATCAAAGACAGTAAGCCTTAACCCCCTAAGCAGT
*
7783311 AGGGTAACAGGCTGAAAAATACAGA-TT-TC-CCCTAAACAGTAGTGGAGCAGATCGAAGATAGC
193 AGGGAAACAGGCTGAAAAATACAGACTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGATAGC
7783373 A
258 A
* * **
7783374 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGGAAATACAGATCTCCCTTAAGCACTAGTG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAAAACTAGTG
* **
7783439 AAGCAGATCGAAGATGGTGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGAT
66 AAGCAGATCGAAGATAGCAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGAT
* * * *
7783504 CTTATCTGCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTAAGCCTTACCCCCCTAAGCAGTAGG
131 CTTATCTGCCTAAACAATAGTAGAGCAGATCAAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGG
* * *
7783569 GAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGAT
196 GAAACAGGCTGAAAAATACAGA-CTTATCTCCCTAAACAGTAGTGGAGCAGAT
7783622 TGAAACGAAA
Statistics
Matches: 214, Mismatches: 24, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
249 3 0.01
250 1 0.00
251 27 0.13
252 85 0.40
253 2 0.01
254 1 0.00
255 70 0.33
257 2 0.01
258 2 0.01
259 21 0.10
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (258 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAAAACTAGTG
AAGCAGATCGAAGATAGCAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGAT
CTTATCTGCCTAAACAATAGTAGAGCAGATCAAAGACAGTAAGCCTTAACCCCCTAAGCAGTAGG
GAAACAGGCTGAAAAATACAGACTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGATAGCA
Found at i:7783518 original size:44 final size:43
Alignment explanation
Indices: 7783467--7783611 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 43
7783457 GAGCCTTAAC
7783467 CCCTAAGCAGTAGGGTAACAGGCAGAAGATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCAGAAGATTACAGATCTTATCT
* * * * * * *
7783511 GCCTAAGCAGTAGTGGAGCAGATCA-AAGACAGTA-AG-CCTTACCC
1 CCCTAAGCAGTAG-GGAACAG-GCAGAAG--ATTACAGATCTTATCT
* *
7783555 CCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCAGAAGATTACAGATCTTATCT
7783599 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
7783612 TGGAGTAGAT
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
42 3 0.04
43 5 0.06
44 60 0.78
45 6 0.08
46 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAACAGGCAGAAGATTACAGATCTTATCT
Found at i:7783626 original size:44 final size:45
Alignment explanation
Indices: 7783495--7783627 Score: 121
Period size: 44 Copynumber: 3.0 Consensus size: 45
7783485 CAGGCAGAAG
* **
7783495 ATTACAGATCTTATCTGCCTAAGCAGTAGTGGAGCAGATCAAAGAC
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAA-AC
* * * * * **
7783541 AGTA-AG-CCTTACCCCCCTAAGCAGTAG-GGAAACAGGCTGAAA-
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATTGAAAC
*
7783583 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAAC
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAC
7783628 GAAAATTCCT
Statistics
Matches: 64, Mismatches: 18, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
42 3 0.05
43 5 0.08
44 49 0.77
45 4 0.06
46 3 0.05
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (45 bp):
ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAC
Found at i:7784368 original size:14 final size:14
Alignment explanation
Indices: 7784349--7784381 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7784339 TATTTTAAAT
7784349 TTTTCTTGTTGT-TA
1 TTTTCTT-TTGTATA
7784363 TTTTCTTTTGTATA
1 TTTTCTTTTGTATA
7784377 TTTTC
1 TTTTC
7784382 ATTCTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.73
Consensus pattern (14 bp):
TTTTCTTTTGTATA
Found at i:7784525 original size:20 final size:21
Alignment explanation
Indices: 7784500--7784542 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7784490 ATATTATTTA
7784500 TTTGTATAT-ATATATAATGT
1 TTTGTATATCATATATAATGT
*
7784520 TTTGTATATCATTTATAATGT
1 TTTGTATATCATATATAATGT
7784541 TT
1 TT
7784543 CGTTACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.58
Consensus pattern (21 bp):
TTTGTATATCATATATAATGT
Found at i:7785417 original size:125 final size:125
Alignment explanation
Indices: 7785199--7785432 Score: 308
Period size: 125 Copynumber: 1.9 Consensus size: 125
7785189 AAAAAACCTC
* * * *
7785199 TTAAAATGAGGCAATATTCCGTATCTAGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCG
1 TTAAAATGAGGCAATATTCCGTATCTAGAAATTCGAGAAATCGTGCCCAATCGTGCTAGGTTTCG
** * * *
7785264 ATTTTTCATTTGACTAAAATACAGAATATCCTTTTGAAATTTCATCCATGTTTTCTTAAA
66 ATTTACCATTTGACCAAAAGACAGAATATCCTTTTAAAATTTCATCCATGTTTTCTTAAA
* * * *
7785324 TTAAAATGAGGCAATATTTCGTATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTAGGTTTCG
1 TTAAAATGAGGCAATATTCCGTATCTAGAAATTCGAGAAATCGTGCCCAATCGTGCTAGGTTTCG
* * *
7785389 ATTTACCGTTTGGCCAAAGAGCCA-AATATCCTTTTAAAATTTCA
66 ATTTACCATTTGACCAAA-AGACAGAATATCCTTTTAAAATTTCA
7785433 AATGCACGAG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
125 89 0.97
126 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
TTAAAATGAGGCAATATTCCGTATCTAGAAATTCGAGAAATCGTGCCCAATCGTGCTAGGTTTCG
ATTTACCATTTGACCAAAAGACAGAATATCCTTTTAAAATTTCATCCATGTTTTCTTAAA
Found at i:7788369 original size:19 final size:19
Alignment explanation
Indices: 7788345--7788382 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7788335 GAAATGAATA
*
7788345 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
7788364 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
7788383 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:7789289 original size:19 final size:19
Alignment explanation
Indices: 7789265--7789303 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7789255 ATGTATATAT
7789265 ATAAAATAA-AGAAAATGAA
1 ATAAAATAACA-AAAATGAA
7789284 ATAAAATAACAAAAATGAA
1 ATAAAATAACAAAAATGAA
7789303 A
1 A
7789304 AATGAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (19 bp):
ATAAAATAACAAAAATGAA
Found at i:7795533 original size:48 final size:52
Alignment explanation
Indices: 7795463--7795561 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
7795453 AATAATTATT
7795463 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
7795511 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
7795562 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:7795543 original size:17 final size:17
Alignment explanation
Indices: 7795518--7795551 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7795508 ATAATTTTAA
*
7795518 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
7795535 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
7795552 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:7795568 original size:17 final size:16
Alignment explanation
Indices: 7795523--7795570 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
7795513 TTTAAATTTT
7795523 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
7795540 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
7795554 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
7795571 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:7795625 original size:54 final size:54
Alignment explanation
Indices: 7795567--7795745 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
7795557 ATAATCATAT
7795567 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * *
7795621 ATTATATATTTTAATTATATT-ATATTTAATAATAATTATGTTATTTTA-TATTTTACAGTATCA
1 ATTAT-GA-TTTGAGTAAATTCATA--TAAGAAT-ATTA-ATTA-TTAAGAATTTT--A-T-T-A
7795684 TA
54 -A
*
7795686 TATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
7795741 ATTAT
1 ATTAT
7795746 ATATTTTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 10 0.11
57 7 0.08
58 5 0.05
59 9 0.10
60 6 0.07
61 9 0.10
62 5 0.05
63 7 0.08
64 10 0.11
65 4 0.04
66 5 0.05
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:7795628 original size:61 final size:61
Alignment explanation
Indices: 7795563--7795750 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
7795553 AGTTATAATC
7795563 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
7795624 ATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATTA-AATT
*
7795683 ATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
7795744 ATATATT
1 ATATATT
7795751 TTAATTAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 30 0.32
60 14 0.15
61 38 0.40
62 6 0.06
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:7795642 original size:18 final size:17
Alignment explanation
Indices: 7795611--7795645 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7795601 ATTATTAAGA
7795611 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
7795628 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
7795646 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:7795684 original size:120 final size:120
Alignment explanation
Indices: 7795560--7795782 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
7795550 ATTAGTTATA
7795560 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
7795625 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
*
7795680 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
7795745 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
7795783 TAATATGATT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
Found at i:7795759 original size:18 final size:17
Alignment explanation
Indices: 7795731--7795765 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7795721 ATTATTAAGA
*
7795731 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7795748 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7795766 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7795777 original size:54 final size:54
Alignment explanation
Indices: 7795594--7795779 Score: 142
Period size: 54 Copynumber: 3.2 Consensus size: 54
7795584 TTCATATAAG
* *
7795594 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
7795648 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
7795711 AAG
53 -TT
* *
7795714 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
7795768 AATAATAATTAT
1 AATAATAATTAT
7795780 GTTTAATATG
Statistics
Matches: 99, Mismatches: 17, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 4 0.04
54 24 0.24
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 13 0.13
67 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:7795881 original size:143 final size:147
Alignment explanation
Indices: 7795719--7795989 Score: 478
Period size: 143 Copynumber: 1.9 Consensus size: 147
7795709 ATAAGAATAT
*
7795719 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
7795784 -AATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
7795845 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
7795862 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
7795927 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
7795990 CAATAATCAT
Statistics
Matches: 120, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
143 64 0.53
144 26 0.22
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:7795902 original size:18 final size:17
Alignment explanation
Indices: 7795874--7795908 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7795864 ATTATTAAGA
*
7795874 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7795891 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7795909 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7796119 original size:44 final size:45
Alignment explanation
Indices: 7796070--7796164 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
7796060 TTACACCTCT
* *
7796070 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
7796114 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
7796159 ATTACA
1 ATTACA
7796165 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:7796164 original size:16 final size:16
Alignment explanation
Indices: 7796143--7796175 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7796133 TTGATTTGCT
*
7796143 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
7796159 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
7796175 A
1 A
7796176 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:7796185 original size:21 final size:21
Alignment explanation
Indices: 7796156--7796198 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7796146 ACACCTCTAT
*
7796156 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
7796177 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
7796198 T
1 T
7796199 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:7800669 original size:19 final size:20
Alignment explanation
Indices: 7800632--7800670 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7800622 CAACTAATTG
7800632 GTGATGTAATCATATATTTT
1 GTGATGTAATCATATATTTT
7800652 GTGAT-TAAT-ATATAATTTT
1 GTGATGTAATCATAT-ATTTT
7800671 TAATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (20 bp):
GTGATGTAATCATATATTTT
Found at i:7803925 original size:22 final size:23
Alignment explanation
Indices: 7803879--7803926 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
7803869 AAAACATTAG
*
7803879 AAACCAGAAATTTTTGGGATCAA
1 AAACCAGAAATTTTTGGGATAAA
7803902 AAACCAGAAATTTTTGGGA-AAA
1 AAACCAGAAATTTTTGGGATAAA
7803924 AAA
1 AAA
7803927 TAAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (23 bp):
AAACCAGAAATTTTTGGGATAAA
Found at i:7805492 original size:11 final size:11
Alignment explanation
Indices: 7805476--7805500 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7805466 AGTTGGAGCA
7805476 AACCCGAAGGC
1 AACCCGAAGGC
7805487 AACCCGAAGGC
1 AACCCGAAGGC
7805498 AAC
1 AAC
7805501 TAGTGTTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.36, G:0.24, T:0.00
Consensus pattern (11 bp):
AACCCGAAGGC
Found at i:7812755 original size:93 final size:93
Alignment explanation
Indices: 7812559--7812876 Score: 323
Period size: 93 Copynumber: 3.4 Consensus size: 93
7812549 TATTTGGGCA
* *** *
7812559 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT-GGATGCGAATGTTTGAACTCGTTGAGTTG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGCCCGAGCTCGTTGAGTTG
* * *
7812623 AGTCCGAGTTC-GTGA--GATG-TAACTAGG
66 AGTCCGAGTTCACTTATGGATGCGAA-T--G
7812650 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGCCCGAGCTCGTTGAGT
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGCCCGAGCTCGTTGAGT
7812715 TGAGTCCGAGTTCACTTATGGATGCGAATG
64 TGAGTCCGAGTTCACTTATGGATGCGAATG
** * * * *
7812745 TTTGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAGATG-TAACTAGGCATCCGAGCTCGTTG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAAC---GC--CCGAGCTCGTTG
*
7812805 AGTTGAGTCCGAGTTCACTTATGGGATGCGAACG
61 AGTTGAGTCCGAGTTCACTTAT-GGATGCGAATG
*
7812839 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
7812877 CGGGTTACAT
Statistics
Matches: 189, Mismatches: 21, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
88 3 0.02
89 6 0.03
91 3 0.02
93 94 0.50
94 69 0.37
95 3 0.02
96 1 0.01
97 5 0.03
98 5 0.03
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (93 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGCCCGAGCTCGTTGAGTTG
AGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7812812 original size:140 final size:140
Alignment explanation
Indices: 7812560--7812875 Score: 632
Period size: 140 Copynumber: 2.3 Consensus size: 140
7812550 ATTTGGGCAT
7812560 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAACTCGTTGAGTTGAG
7812625 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
7812690 ATGCGAACGC
131 ATGCGAACGC
7812700 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAACTCGTTGAGTTGAG
7812765 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
7812830 ATGCGAACGC
131 ATGCGAACGC
7812840 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7812876 GCGGGTTACA
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 176 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (140 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAACTCGTTGAGTTGAG
TCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
ATGCGAACGC
Found at i:7812868 original size:47 final size:47
Alignment explanation
Indices: 7812560--7812876 Score: 316
Period size: 47 Copynumber: 6.8 Consensus size: 47
7812550 ATTTGGGCAT
* *
7812560 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT-GGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
** * * * *
7812606 TTGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAGATG-TAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAAC---GC
7812651 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
* *
7812700 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT-GGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
** * * * *
7812746 TTGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAGATG-TAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAAC---GC
7812791 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
7812840 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
7812877 CGGGTTACAT
Statistics
Matches: 219, Mismatches: 30, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.04
44 2 0.01
45 2 0.01
46 58 0.26
47 119 0.54
49 6 0.03
51 12 0.05
52 6 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (47 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGATGCGAACGC
Found at i:7818933 original size:46 final size:45
Alignment explanation
Indices: 7818878--7819053 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 45
7818868 TATTTGGGCA
7818878 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
7818924 TTCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
7818969 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
7819017 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7819054 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:7819033 original size:93 final size:93
Alignment explanation
Indices: 7818874--7819045 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
7818864 GGAATATTTG
* **
7818874 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
7818939 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
7818967 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
7819032 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
7819046 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:7830832 original size:26 final size:26
Alignment explanation
Indices: 7830772--7830826 Score: 89
Period size: 23 Copynumber: 2.2 Consensus size: 26
7830762 TACTTATCAC
7830772 ATATTTTAACCTAGTATAAAATATGA
1 ATATTTTAACCTAGTATAAAATATGA
7830798 ATATTTTAA-CTA-TAT-AAATATGA
1 ATATTTTAACCTAGTATAAAATATGA
7830821 ATATTT
1 ATATTT
7830827 GTTTAAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 14 0.48
24 3 0.10
25 3 0.10
26 9 0.31
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.44
Consensus pattern (26 bp):
ATATTTTAACCTAGTATAAAATATGA
Found at i:7832358 original size:15 final size:15
Alignment explanation
Indices: 7832340--7832374 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
7832330 TAATAATAAT
7832340 AATAACAACAACAAC
1 AATAACAACAACAAC
7832355 AATAACAACAACAAC
1 AATAACAACAACAAC
7832370 AATAA
1 AATAA
7832375 TAATAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.69, C:0.23, G:0.00, T:0.09
Consensus pattern (15 bp):
AATAACAACAACAAC
Found at i:7835168 original size:19 final size:20
Alignment explanation
Indices: 7835133--7835170 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7835123 CCCTCATTCT
7835133 AAATAAAAATAAAATATTTC
1 AAATAAAAATAAAATATTTC
*
7835153 AAATAAAAA-AATATATTT
1 AAATAAAAATAAAATATTT
7835171 TACTAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATAAAAATAAAATATTTC
Found at i:7836586 original size:21 final size:22
Alignment explanation
Indices: 7836541--7836588 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7836531 ATTATTCTAT
* *
7836541 TTTTTTTAAATTTCTTTATATA
1 TTTTTTTAAATTTCTTAATAAA
*
7836563 TTTTTTTGAATTT-TTAATAAA
1 TTTTTTTAAATTTCTTAATAAA
7836584 TTTTT
1 TTTTT
7836589 AAAAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTTTTAAATTTCTTAATAAA
Found at i:7836634 original size:18 final size:19
Alignment explanation
Indices: 7836613--7836653 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7836603 ATTTTATATT
*
7836613 TTTTATAAA-TATTTTGAA
1 TTTTAAAAACTATTTTGAA
7836631 TTTTAAAAACTATTTTGAA
1 TTTTAAAAACTATTTTGAA
7836650 TTTT
1 TTTT
7836654 TTTATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTTAAAAACTATTTTGAA
Found at i:7837062 original size:18 final size:19
Alignment explanation
Indices: 7837040--7837084 Score: 83
Period size: 18 Copynumber: 2.4 Consensus size: 19
7837030 GATATATTAA
7837040 AAAATTAAATTAAATTGTT
1 AAAATTAAATTAAATTGTT
7837059 -AAATTAAATTAAATTGTT
1 AAAATTAAATTAAATTGTT
7837077 AAAATTAA
1 AAAATTAA
7837085 GTTTAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
AAAATTAAATTAAATTGTT
Found at i:7837079 original size:13 final size:13
Alignment explanation
Indices: 7837044--7837068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7837034 TATTAAAAAA
7837044 TTAAATTAAATTG
1 TTAAATTAAATTG
7837057 TTAAATTAAATT
1 TTAAATTAAATT
7837069 AAATTGTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
TTAAATTAAATTG
Found at i:7843130 original size:117 final size:117
Alignment explanation
Indices: 7842924--7843153 Score: 397
Period size: 117 Copynumber: 2.0 Consensus size: 117
7842914 CCGAATTGAC
* * *
7842924 AATTGATGGAGATTACCGAAGCAACCTAATCACCCATAATTAGATTTGATTTATTCTTCCTTTTT
1 AATTGATGGAGATTACCGAAACAAACTAATCACCCATAATCAGATTTGATTTATTCTTCCTTTTT
*
7842989 AATCTTTTAAATTTTAATCTTTTATGTTGTTTTATTTTTATCATTATATGAA
66 AATCTTTTAAATTTTAATCTTTTATGTTGTTTTACTTTTATCATTATATGAA
* *
7843041 AATTGATGGAGATTACCGAAACAAACTAATCACCCATAATCATATTTGATTTATTCTTCTTTTTT
1 AATTGATGGAGATTACCGAAACAAACTAATCACCCATAATCAGATTTGATTTATTCTTCCTTTTT
*
7843106 AATCTTTTAAATTTTATTCTTTTATGTTGTTTTACTTTTATCATTATA
66 AATCTTTTAAATTTTAATCTTTTATGTTGTTTTACTTTTATCATTATA
7843154 AAACCCCAAA
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 106 1.00
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.49
Consensus pattern (117 bp):
AATTGATGGAGATTACCGAAACAAACTAATCACCCATAATCAGATTTGATTTATTCTTCCTTTTT
AATCTTTTAAATTTTAATCTTTTATGTTGTTTTACTTTTATCATTATATGAA
Found at i:7855894 original size:43 final size:43
Alignment explanation
Indices: 7855833--7855914 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
7855823 AGAGGACCAG
7855833 TTGGAAATAGACATGTTTGGATCATATTGCATATAATTTTCAT
1 TTGGAAATAGACATGTTTGGATCATATTGCATATAATTTTCAT
* *
7855876 TTGGAAATAGACATGTTTGGATTATATTGCATGTAATTT
1 TTGGAAATAGACATGTTTGGATCATATTGCATATAATTT
7855915 ACATACTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (43 bp):
TTGGAAATAGACATGTTTGGATCATATTGCATATAATTTTCAT
Found at i:7857721 original size:25 final size:26
Alignment explanation
Indices: 7857686--7857752 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 26
7857676 ACACACCATA
*
7857686 GCTCTCTTGAGCTTTC-CGATACTTG
1 GCTCTCATGAGCTTTCTCGATACTTG
*
7857711 GCTCTCATGAGC-TTCTCGATATTTG
1 GCTCTCATGAGCTTTCTCGATACTTG
*
7857736 GCT-TGCAAGAGCTTTCT
1 GCTCT-CATGAGCTTTCT
7857753 GATGTACAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.11
25 28 0.78
26 4 0.11
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (26 bp):
GCTCTCATGAGCTTTCTCGATACTTG
Found at i:7866284 original size:35 final size:35
Alignment explanation
Indices: 7866241--7866374 Score: 160
Period size: 35 Copynumber: 3.8 Consensus size: 35
7866231 GTTTGGCGTG
* *
7866241 TTTCGGTTGGACCAACTCTTATGAGCATTGGCATA
1 TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
* * *
7866276 TTTTGGTTGGACTAGCTCTTATGAGCATTGGCGTG
1 TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
* * *
7866311 TTTCGGTTGGATTAGCTCTTATGAGCACTGGCATG
1 TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
* * * *
7866346 TTACGATTAGACTAGCTCTTGTGAGCATT
1 TTTCGGTTGGACTAGCTCTTATGAGCATT
7866375 TGATGTGTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 84 1.00
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.37
Consensus pattern (35 bp):
TTTCGGTTGGACTAGCTCTTATGAGCATTGGCATA
Found at i:7866359 original size:70 final size:70
Alignment explanation
Indices: 7866233--7866374 Score: 194
Period size: 70 Copynumber: 2.0 Consensus size: 70
7866223 TACTCTTTGT
* ** * *
7866233 TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCATTGGCATATTTTGGTTGGACTAGCTCTTAT
1 TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCACTGGCATATTACGATTAGACTAGCTCTTAT
7866298 GAGCA
66 GAGCA
** * * *
7866303 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCACTGGCATGTTACGATTAGACTAGCTCTTGT
1 TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCACTGGCATATTACGATTAGACTAGCTCTTAT
7866368 GAGCA
66 GAGCA
7866373 TT
1 TT
7866375 TGATGTGTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.37
Consensus pattern (70 bp):
TTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCACTGGCATATTACGATTAGACTAGCTCTTAT
GAGCA
Found at i:7866532 original size:22 final size:22
Alignment explanation
Indices: 7866486--7866550 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
7866476 TGGTAAGGTA
*
7866486 ATGTTCAATGAAAGT-ATG-TTT
1 ATGTTC-ATGAAATTGATGATTT
7866507 ATGTTCATGAAATTGATGATTT
1 ATGTTCATGAAATTGATGATTT
*
7866529 ATGTTCATGAAGTTGATGATTT
1 ATGTTCATGAAATTGATGATTT
7866551 CAAATGATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
20 7 0.17
21 9 0.22
22 24 0.60
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.45
Consensus pattern (22 bp):
ATGTTCATGAAATTGATGATTT
Found at i:7871573 original size:40 final size:40
Alignment explanation
Indices: 7871486--7871589 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
7871476 ACTCGATATC
* * *
7871486 TCACACACTAAGTGCCGTACATAGCTAAATCTATCTCAAA
1 TCACACACTAAGTGCCATATATAGCTAAAGCTATCTCAAA
* **
7871526 TCACACACTAAGTGCCATATATAGCTAAAGCTATGTTGAA
1 TCACACACTAAGTGCCATATATAGCTAAAGCTATCTCAAA
** *
7871566 TTGCACACTAAGTGTCATATATAG
1 TCACACACTAAGTGCCATATATAG
7871590 TGTCATATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCTAAAGCTATCTCAAA
Found at i:7871593 original size:12 final size:12
Alignment explanation
Indices: 7871576--7871602 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7871566 TTGCACACTA
7871576 AGTGTCATATAT
1 AGTGTCATATAT
7871588 AGTGTCATATAT
1 AGTGTCATATAT
7871600 AGT
1 AGT
7871603 CGAAGCTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (12 bp):
AGTGTCATATAT
Done.