Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 270 of 320
Found at i:87460199 original size:22 final size:24
Alignment explanation
Indices: 87460136--87460200 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
87460126 CGTGATAATA
*
87460136 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
87460161 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
87460184 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
87460201 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:87460257 original size:25 final size:25
Alignment explanation
Indices: 87460221--87460352 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
87460211 AAAAAAATAT
*
87460221 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * *
87460246 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAATATTAA-AG
* *
87460271 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
87460295 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
87460317 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
87460340 AAATATA-ATAATA
1 ATATATACATAATA
87460353 ACAAAAAAAG
Statistics
Matches: 85, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 24 0.28
24 10 0.12
25 33 0.39
26 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:87460938 original size:30 final size:30
Alignment explanation
Indices: 87460845--87460944 Score: 139
Period size: 30 Copynumber: 3.3 Consensus size: 30
87460835 TAGGTACAAG
*
87460845 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* ** *
87460875 AGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
87460905 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAA-GTGTGGCTAGTGGAGT
87460935 TGGTGGTGGA
1 TGGTGGTGGA
87460945 AAAGAAGTGG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
29 2 0.03
30 58 0.97
ACGTcount: A:0.19, C:0.04, G:0.49, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:87460955 original size:30 final size:30
Alignment explanation
Indices: 87460891--87460959 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
87460881 TGGAGCAAGT
* * **
87460891 GTGGCTAGTGGATTTGGTGGTGGAGAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGAA
87460921 GTGGCTAGTGGAGTTGGTGGTGGAAAAGAA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGAA
87460951 GTGGCTAGT
1 GTGGCTAGT
87460960 TGAGAAAAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.20, C:0.04, G:0.48, T:0.28
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGAA
Found at i:87460955 original size:60 final size:60
Alignment explanation
Indices: 87460845--87460959 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
87460835 TAGGTACAAG
* * *
87460845 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGATT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAAGAGTGGCTAGTGGATT
* **
87460905 TGGTGGTGGAG-AAGGTGTGGCTAGTGGAGTTGGTGGTGGA-AAAGAAGTGGCTAGT
1 TGGTGGTGGAGCAA-GTGTGGCTAGTGGAGTAGGTAATGGAGAAAG-AGTGGCTAGT
87460960 TGAGAAAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 5 0.11
60 42 0.89
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (60 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGTAGGTAATGGAGAAAGAGTGGCTAGTGGATT
Found at i:87461665 original size:30 final size:30
Alignment explanation
Indices: 87461629--87461689 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
87461619 TTTGAAAAAT
87461629 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
87461659 AGAAATTAAAAAGCTCAACTCACCTCTCGC
1 AGAAATTAAAAAGCTCAACTCAACTCTCGC
87461689 A
1 A
87461690 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.20
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:87462010 original size:77 final size:77
Alignment explanation
Indices: 87461811--87462050 Score: 273
Period size: 77 Copynumber: 3.1 Consensus size: 77
87461801 AAAATAGATT
* ** * * * * *
87461811 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTAAGTTAATTTTTTT
1 TTGAAAATACCTCAACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTT
* * *
87461876 GAAAAATATAAA
66 GAAAGACAGAAA
* * * * *
87461888 TTGAAAAAATACCTCAATGTGTGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 TTG--AAAATACCTCAACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
87461953 TTGAAAGACAGAAA
64 TTGAAAGACAGAAA
* * *
87461967 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTT
* *
87462032 TAAAGGCAGAAA
66 GAAAGACAGAAA
87462044 TTGAAAA
1 TTGAAAA
87462051 ACAGAAAATG
Statistics
Matches: 138, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
77 74 0.54
79 64 0.46
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (77 bp):
TTGAAAATACCTCAACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTT
GAAAGACAGAAA
Found at i:87462063 original size:91 final size:90
Alignment explanation
Indices: 87461953--87462139 Score: 225
Period size: 91 Copynumber: 2.1 Consensus size: 90
87461943 GTTAATTTTT
* * * *
87461953 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAAATGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCACAATA
* * *
87462017 TGAGTTGATTTTTTTTA-AAGGCAGAAA
65 CGAGTTGATTGTTTTGACAA--CAGAAA
** * * *
87462044 TTGAAAAACAGAAAATGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAAATGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATAC
87462109 GAGTTGATTGTTTTGACAACAGAAA
66 GAGTTGATTGTTTTGACAACAGAAA
87462134 TTGAAA
1 TTGAAA
87462140 TTACCTCAGC
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
90 14 0.17
91 66 0.80
92 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (90 bp):
TTGAAAAACAGAAAATGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTGTTTTGACAACAGAAA
Found at i:87462068 original size:247 final size:242
Alignment explanation
Indices: 87461668--87462441 Score: 748
Period size: 247 Copynumber: 3.2 Consensus size: 242
87461658 CAGAAATTAA
*
87461668 AAAGCTCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTTGAAAAAAAAAAGAAATTGAAAATA
1 AAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG---AAAAACAGAAATTGAAAATA
* *
87461732 GCTCAGCACGTGAGCTAAGGCTCAACTCACTTCTCGCAATATGAGTT-A-ATTTTTGAAA-ACAG
63 GCTCAGCACGTGAGC-AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAGACAG
* *** *
87461794 -AATCTGAAAAATAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCA
127 AAAT-TGAAAAACAGAAAATGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCACA
** * * * *
87461858 ATGTAAGTTAATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAATGTGTGAT-CT
191 ATACAAGTTAATTGTTTTG-AAAACAGAAATTG--AAAATACCTC-A-GCGTG-TCCT
*
87461915 AAAGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTTGAAAGACAGAAATTGAAAATAGCT
1 AAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTGAAAATAGCT
* * *
87461979 CAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAA
66 CAGCACGTGAG-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAGACAGAAA
* * * * * *
87462044 TTGAAAAACAGAAAATGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
130 TTGAAAAACAGAAAATGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCACAATAC
* * * *
87462109 GAGTTGATTGTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
195 AAGTTAATTGTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCT
* * * *
87462157 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAATACCT
1 AAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTGAAAATAGCT
* ** * *
87462222 CAGCATGTTTTG--AGGCTCAACTCATTTCTCACAATATGAGTTGA-TTTTTTT-----------
66 CAGCACG-TGAGCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAGACAGAAA
* * * * ** * ** *
87462273 TTGAAGAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCGCTCGCAATAC
130 TTGAAAAACAGAAAATGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCACAATAC
* * * *
87462338 GAGTTGATT-TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCT
195 AAGTTAATTGTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCT
* * * * * **
87462385 GAGGCTCAACTCACCTCTAGCAATATGAGTT-CATTTTTTTTATGAACAGAAATTGAA
1 AAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTGAA
87462442 GAACAGAAAT
Statistics
Matches: 466, Mismatches: 52, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
227 21 0.05
228 68 0.15
229 68 0.15
240 7 0.02
241 30 0.06
242 35 0.08
243 36 0.08
244 72 0.15
245 2 0.00
246 20 0.04
247 104 0.22
248 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (242 bp):
AAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTGAAAATAGCT
CAGCACGTGAGCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAGACAGAAAT
TGAAAAACAGAAAATGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCACAATACA
AGTTAATTGTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCT
Found at i:87462206 original size:76 final size:76
Alignment explanation
Indices: 87462044--87462441 Score: 466
Period size: 76 Copynumber: 5.2 Consensus size: 76
87462034 AAGGCAGAAA
* ** * * *
87462044 TTGAAAAACAGAAAATGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
*
87462109 GAGTTGA-TTGTT
64 GAGTTGATTTTTT
* *
87462121 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
87462185 GTTGATTTTTT
66 GTTGATTTTTT
* ** ** *
87462196 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTTTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
87462261 GTTGATTTTTTT
66 GTTGA-TTTTTT
* * * * * *
87462273 TTGAAGAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
87462338 GAGTTGA--TTTT
64 GAGTTGATTTTTT
* * *
87462349 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
87462413 GTTCATTTTTT
66 GTTGATTTTTT
**
87462424 TT-ATGAACAGAAATTGAA
1 TTGAAAAACAGAAATTGAA
87462442 GAACAGAAAT
Statistics
Matches: 273, Mismatches: 40, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
73 30 0.11
74 33 0.12
75 53 0.19
76 90 0.33
77 40 0.15
79 27 0.10
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:87462447 original size:14 final size:14
Alignment explanation
Indices: 87462428--87462455 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87462418 TTTTTTTTAT
87462428 GAACAGAAATTGAA
1 GAACAGAAATTGAA
87462442 GAACAGAAATTGAA
1 GAACAGAAATTGAA
87462456 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:87462523 original size:89 final size:89
Alignment explanation
Indices: 87462354--87462530 Score: 234
Period size: 89 Copynumber: 2.0 Consensus size: 89
87462344 ATTTTTTGAC
** *
87462354 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTCAT
1 AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTCAT
* * **
87462419 TTTTTTTATGAACAGAAATTGAAG
66 ATTTTTGACAAACAGAAATTGAAG
*
87462443 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
87462507 -A-ATTTTTGACAAACAGAAATTGAA
63 CATATTTTTGACAAACAGAAATTGAA
87462531 ATTACCTCAG
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
89 41 0.53
90 1 0.01
91 33 0.43
92 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (89 bp):
AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTCAT
ATTTTTGACAAACAGAAATTGAAG
Found at i:87462572 original size:73 final size:74
Alignment explanation
Indices: 87462437--87462605 Score: 259
Period size: 73 Copynumber: 2.3 Consensus size: 74
87462427 TGAACAGAAA
* *
87462437 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGT-ACCCGAGGCTCAACTCACCTCTCGCAATAT
*
87462502 GAGTTAATTT
65 GAGTCAATTT
* **
87462512 TTGACAAACAGAAATTGAAATTACCTCAGCATGT-CCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTACCCGAGGCTCAACTCACCTCTCGCAATATG
*
87462576 AGTCGATTT
66 AGTCAATTT
87462585 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
87462606 CCAGAAATTG
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
73 55 0.65
75 30 0.35
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTCAATTT
Found at i:87462604 original size:14 final size:14
Alignment explanation
Indices: 87462585--87462619 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
87462575 GAGTCGATTT
87462585 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
87462599 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
87462613 TTGAAAA
1 TTGAAAA
87462620 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:87462663 original size:162 final size:161
Alignment explanation
Indices: 87462273--87462763 Score: 668
Period size: 162 Copynumber: 3.0 Consensus size: 161
87462263 TGATTTTTTT
* * *
87462273 TTGAAGAACAGAAATTGAAAATACCTCGGCGTGTGA-CCTAAGGCTCAACTCGCCGCTCGCAATA
1 TTGAAGAACAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
* *
87462337 CGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 TGAGTT-AATTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * **
87462402 TAGCAATATGAGTTC-ATTTTTTTTATGAACAGAAA
129 TCGCAATATGAG-TCGA--TTTTTGAAAAACAGAAA
* * *
87462437 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAGAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* *
87462502 GAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCT
66 GAGTTAATTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
87462567 CGCAATATGAGTCGATTTTTGAAAAACAGAAA
130 CGCAATATGAGTCGATTTTTGAAAAACAGAAA
*
87462599 TTGAA-AACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTGAAGAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
* * * * **
87462663 TGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 TGAGTTAATTTTTGA-CAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *
87462728 TCGCAATATGAGTTGA-TTTTGACAAACA-AAA
129 TCGCAATATGAGTCGATTTTTGAAAAACAGAAA
87462759 TTGAA
1 TTGAA
87462764 ATTACCTCAG
Statistics
Matches: 294, Mismatches: 28, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
160 8 0.03
161 13 0.04
162 142 0.48
163 11 0.04
164 118 0.40
165 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (161 bp):
TTGAAGAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTTAATTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTCGATTTTTGAAAAACAGAAA
Found at i:87462674 original size:89 final size:87
Alignment explanation
Indices: 87462512--87462696 Score: 232
Period size: 89 Copynumber: 2.1 Consensus size: 87
87462502 GAGTTAATTT
* *
87462512 TTGACAAA-CAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCATGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
87462576 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* * *
87462599 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCATGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
** *
87462664 GAG-CTAATTTTTGATGAACATAAA
64 GAGTC-AATTTTTGAAAAACAGAAA
87462688 TT-AAAACCA
1 TTGAAAACCA
87462697 CCTCAGCGTG
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
86 3 0.04
87 28 0.33
88 8 0.09
89 46 0.54
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCATGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:87462721 original size:326 final size:316
Alignment explanation
Indices: 87462126--87462747 Score: 788
Period size: 326 Copynumber: 1.9 Consensus size: 316
87462116 TTGTTTTGAC
** *
87462126 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *** **
87462191 TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTTTTGAGGCTCAACTCATTTCTCACAA
65 TATTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCACAA
* ** *
87462256 TATGAGTTGATTTTTTTTTGAAGAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAA
130 TATGAGTCGATTTTTAATTGAAGAACAGAAATTGAAAATACCTCAGCGTGTGACCTAAGGCTCAA
* * * * **
87462321 CTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
195 CTCACCGCTCGCAATACGAGCTGAATTTTTGACAACAGAAATTAAAACCACCTCAGCGTGTCCTG
87462386 AGGCTCAACTCACCTCTAGCAATATGAGTTCATTTTTTTTATGAACAGAAATTGAAG
260 AGGCTCAACTCACCTCTAGCAATATGAGTTCATTTTTTTTATGAACAGAAATTGAAG
87462443 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
87462507 -A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGC
63 GATATTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCAC
87462570 AATATGAGTCGATTTTTGAAAAACAGAAATTGAA-AACCAGAAATTGAAAATACCTCAGCGTGTG
128 AATATGAGTCGATTTTT----------AATTGAAGAA-CAGAAATTGAAAATACCTCAGCGTGTG
* * * * *
87462634 AGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCT-AATTTTTGATGAACATAAATTAAAACCA
182 A-CCTAAGGCTCAACTCACCGCTCGCAATACGAGCTGAATTTTTGA-CAACAGAAATTAAAACCA
* *
87462697 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
245 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTCATTTT
87462748 GACAAACAAA
Statistics
Matches: 260, Mismatches: 29, Indels: 23
0.83 0.09 0.07
Matches are distributed among these distances:
316 69 0.27
317 22 0.08
318 1 0.00
319 34 0.13
320 2 0.01
325 10 0.04
326 120 0.46
327 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (316 bp):
AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
ATTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCACAAT
ATGAGTCGATTTTTAATTGAAGAACAGAAATTGAAAATACCTCAGCGTGTGACCTAAGGCTCAAC
TCACCGCTCGCAATACGAGCTGAATTTTTGACAACAGAAATTAAAACCACCTCAGCGTGTCCTGA
GGCTCAACTCACCTCTAGCAATATGAGTTCATTTTTTTTATGAACAGAAATTGAAG
Found at i:87462734 original size:73 final size:71
Alignment explanation
Indices: 87462639--87462836 Score: 240
Period size: 69 Copynumber: 2.8 Consensus size: 71
87462629 GTGTGAGCCA
* * *
87462639 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
87462704 GTGTCCTG
66 --GTCCTG
** * **
87462712 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACA-AAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
87462775 GTCTTG
66 GTCCTG
* *
87462781 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-TTGAAACATAAATTTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATG-AACATAAA-TTAAAA
87462837 AATGAAAATT
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
69 36 0.34
70 8 0.07
71 19 0.18
72 15 0.14
73 29 0.27
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:87462977 original size:157 final size:155
Alignment explanation
Indices: 87462696--87462980 Score: 421
Period size: 157 Copynumber: 1.8 Consensus size: 155
87462686 AATTAAAACC
** *
87462696 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAATT
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAAACAAAATT
* ** * *
87462761 GAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAACA
66 GAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTGAAACA
87462826 TAAATTTAAAAAATGAAAATTGAAAAT
129 TAAATTTAAAAAATGAAAATTGAAAAT
87462853 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAAA
1 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAA-AC-AAAA
*
87462917 TTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAA
64 TTGAAAATACCTCAGCGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAA
87462981 AAGTAGAAAT
Statistics
Matches: 115, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
156 3 0.03
157 60 0.52
158 21 0.18
160 31 0.27
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (155 bp):
ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAAACAAAATT
GAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACATA
AATTTAAAAAATGAAAATTGAAAAT
Found at i:87463099 original size:54 final size:54
Alignment explanation
Indices: 87462945--87463087 Score: 250
Period size: 54 Copynumber: 2.6 Consensus size: 54
87462935 ACCCCGAGGC
* * *
87462945 TCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGT
87462999 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGT
87463053 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGA
87463088 CAAACAGAAA
Statistics
Matches: 85, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 81 0.95
55 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGT
Found at i:87463399 original size:72 final size:72
Alignment explanation
Indices: 87463181--87463746 Score: 448
Period size: 72 Copynumber: 7.5 Consensus size: 72
87463171 GTAATCTGAA
* * *
87463181 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----ATTTTGAAAACAGAAATTGAAATTACCTCAG
* *
87463246 CATGTGAAC-CGAG
62 C--GTG-TCTTGAG
* * * *
87463259 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTACCTCAGC
87463324 GTGTCTTGAG
63 GTGTCTTGAG
** *
87463334 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
87463399 TCCTGAG
66 TCTTGAG
* * * * ** **
87463406 GCTCAACTCACCTCTCGCAAAATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGA-AAACAGAAATT---GAA-ATTACC
* *
87463471 TGAAAAGACCTCAG-CATGTGA-
58 T---CAG-CGT--GTC-T-TGAG
*
87463492 GC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTAC
1 GCTC-A-ACTC-----ACCTCTCGCAATATGAGTTGAA-TTTTGA-AAACAGAAATTGAAATTAC
*
87463555 CTCAGCGTGTC-CGAG
57 CTCAGCGTGTCTTGAG
*
87463570 GCTCAACTCACCTTTCGCAATATGAGTTG-ATTTTGACAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAGCGT
*
87463634 GTCCTGAG
65 GTCTTGAG
* * * * *
87463642 GCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAACAAAAATTAAAAGTACCTCAACGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
87463706 TCTTGAG
66 TCTTGAG
*
87463713 GCTCAACTCATCTCTCGCAATATGAGTTG-ATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
87463747 CCTTGAAAAG
Statistics
Matches: 409, Mismatches: 49, Indels: 67
0.78 0.09 0.13
Matches are distributed among these distances:
71 99 0.24
72 120 0.29
74 1 0.00
75 39 0.10
76 10 0.02
77 38 0.09
78 32 0.08
79 5 0.01
80 4 0.01
81 2 0.00
82 2 0.00
83 2 0.00
84 2 0.00
85 5 0.01
86 7 0.02
87 6 0.01
89 16 0.04
91 1 0.00
92 18 0.04
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCTTGAG
Found at i:87463466 original size:14 final size:14
Alignment explanation
Indices: 87463447--87463474 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87463437 TTTTTTTTAC
87463447 GAACAGAAATTGAA
1 GAACAGAAATTGAA
87463461 GAACAGAAATTGAA
1 GAACAGAAATTGAA
87463475 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:87463482 original size:90 final size:90
Alignment explanation
Indices: 87463367--87463532 Score: 246
Period size: 92 Copynumber: 1.8 Consensus size: 90
87463357 AAGTTGAATT
** *
87463367 TTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAAAATG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAAAATG
*
87463430 AGTTGATTTTTTTTTACGAACAGAAA
65 AGTTAATTTTTTTTTACGAACAGAAA
*
87463456 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAAAAT
87463521 GAGTTAATTTTT
64 GAGTTAATTTTT
87463533 GACAAACAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
89 5 0.07
90 22 0.32
92 39 0.57
93 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (90 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAAAATGA
GTTAATTTTTTTTTACGAACAGAAA
Found at i:87463621 original size:71 final size:71
Alignment explanation
Indices: 87463462--87463746 Score: 401
Period size: 71 Copynumber: 3.9 Consensus size: 71
87463452 GAAATTGAAG
** * *
87463462 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAATTACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
87463527 ATTTTTGACA
63 A-TTTTGACA
*
87463537 AACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
87463602 TTGACA
66 TTGACA
*
87463608 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
87463673 TTTGA-A
65 TTTGACA
* * * * * *
87463679 AACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
87463744 TTT
65 TTT
87463747 CCTTGAAAAG
Statistics
Matches: 194, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
71 99 0.51
72 70 0.36
73 3 0.02
75 22 0.11
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (71 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTGACA
Found at i:87463634 original size:236 final size:238
Alignment explanation
Indices: 87463223--87463675 Score: 736
Period size: 236 Copynumber: 1.9 Consensus size: 238
87463213 TTTTTTTAAA
*
87463223 AACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
1 AACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
* * *
87463288 ATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
66 A-TATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTCGAGGCTCAACTCACTTCTCGCA
87463353 ATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
130 ATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
87463418 TCTCGCAAAATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
195 TCTAGCAAAATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
* *
87463462 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-
1 AACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
* *
87463526 A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC-CGAGGCTCAACTCACCTT-TCGC
66 ATATTTTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTCGAGGCTCAACTCA-CTTCTCGC
*
87463588 AATATGAGTTG-ATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
129 AATATAAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
*
87463652 CCTCTAGCAATATGAGTTGATTTT
193 CCTCTAGCAAAATGAGTTGATTTT
87463676 GAAAACAAAA
Statistics
Matches: 200, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
235 7 0.04
236 101 0.50
237 30 0.15
238 1 0.00
239 61 0.31
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (238 bp):
AACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTG
ATATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTCGAGGCTCAACTCACTTCTCGCAA
TATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
CTAGCAAAATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
Found at i:87473059 original size:25 final size:23
Alignment explanation
Indices: 87473026--87473084 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
87473016 AAAATTTACA
*
87473026 ACAATAATATAAAATAATGATATGT
1 ACAAAAATATAAAAT-ATG-TATGT
*
87473051 ACAAAAATAT-ATATATGTATGT
1 ACAAAAATATAAAATATGTATGT
87473073 ACATAAAATATA
1 ACA-AAAATATA
87473085 CACTAATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 8 0.27
23 10 0.33
24 3 0.10
25 9 0.30
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (23 bp):
ACAAAAATATAAAATATGTATGT
Found at i:87473794 original size:27 final size:26
Alignment explanation
Indices: 87473742--87473792 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
87473732 GGTTTCTTGG
87473742 TTTTTTTTTGGGGGGGTTAGGTTTTTC
1 TTTTTTTTT-GGGGGGTTAGGTTTTTC
87473769 TTTTTTTTT-GGGGGTTAGGTTTTT
1 TTTTTTTTTGGGGGGTTAGGTTTTT
87473793 TTTGGGGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 15 0.62
27 9 0.38
ACGTcount: A:0.04, C:0.02, G:0.31, T:0.63
Consensus pattern (26 bp):
TTTTTTTTTGGGGGGTTAGGTTTTTC
Found at i:87477519 original size:20 final size:20
Alignment explanation
Indices: 87477481--87477519 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
87477471 TAACATTAAT
* *
87477481 AATAAATATAGTAGGAATAA
1 AATAAATATAATAAGAATAA
*
87477501 AATAAATATAATAATAATA
1 AATAAATATAATAAGAATA
87477520 TACACACAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (20 bp):
AATAAATATAATAAGAATAA
Found at i:87484416 original size:18 final size:17
Alignment explanation
Indices: 87484384--87484417 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87484374 AATCATAGAT
87484384 ATCAAAATAAAATATAA
1 ATCAAAATAAAATATAA
*
87484401 ATCAAAGATAATATATA
1 ATCAAA-ATAAAATATA
87484418 TGTGTTTGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
ATCAAAATAAAATATAA
Found at i:87488558 original size:60 final size:60
Alignment explanation
Indices: 87488465--87488584 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
87488455 AGCAATCTTC
* *
87488465 TCATTATACCTTAAGACTCTATCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTA
1 TCATTATACCTCAAGACTCTATCAGCCCTACCACCACTACAAAACCTGATGAAAATCCTA
87488525 TCATTATACCTCAAGACTCTATCAGCCCTACCACCACTACAAAACCTGATGAAAATCCTA
1 TCATTATACCTCAAGACTCTATCAGCCCTACCACCACTACAAAACCTGATGAAAATCCTA
87488585 CAGCCACTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.36, C:0.33, G:0.07, T:0.24
Consensus pattern (60 bp):
TCATTATACCTCAAGACTCTATCAGCCCTACCACCACTACAAAACCTGATGAAAATCCTA
Found at i:87491565 original size:132 final size:130
Alignment explanation
Indices: 87491325--87491571 Score: 334
Period size: 132 Copynumber: 1.9 Consensus size: 130
87491315 TCAGACATGA
* * * * *
87491325 ATACAGTATCAAACGCATGCAGTGACAAACATCTTGTTTGTCATAAGTAATCTACTTAGAGCTAG
1 ATACAATATCAAACACATGCAGTGACAAACATCTTATTTATCATAAGTAATCTACTCAGAGCTAG
* *
87491390 ACACATGCATAATTTCTCAAAACATCTACAGTGAAACCACCAGAGTTGTAAATTACCCTTAAACT
66 ACACATACATAATTTCTCAAAACACCTACAGTGAAACCACCAGAGTTGTAAATTACCCTTAAACT
* * * *
87491455 ATACAATATCAAACACATGCTGTGACCAACATTTTATTTATCATAGGTAATATCTACTCAGAGCT
1 ATACAATATCAAACACATGCAGTGACAAACATCTTATTTATCATAAGT-A-ATCTACTCAGAGCT
* * *
87491520 AGACGCATACAT-ATTTCCTCAAAATACCTACAGTGAAACCTCCAGAGTTGTA
64 AGACACATACATAATTT-CTCAAAACACCTACAGTGAAACCACCAGAGTTGTA
87491572 TGACACCCTT
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
130 40 0.40
131 5 0.05
132 55 0.55
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (130 bp):
ATACAATATCAAACACATGCAGTGACAAACATCTTATTTATCATAAGTAATCTACTCAGAGCTAG
ACACATACATAATTTCTCAAAACACCTACAGTGAAACCACCAGAGTTGTAAATTACCCTTAAACT
Found at i:87496143 original size:13 final size:13
Alignment explanation
Indices: 87496127--87496165 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
87496117 TTAAAATTAT
87496127 TTTTACTTATAAA
1 TTTTACTTATAAA
87496140 TTTTA-TTAT---
1 TTTTACTTATAAA
87496149 TTTTACTTATAAA
1 TTTTACTTATAAA
87496162 TTTT
1 TTTT
87496166 CTTTTATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
9 5 0.23
10 4 0.18
12 4 0.18
13 9 0.41
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTACTTATAAA
Found at i:87496148 original size:22 final size:22
Alignment explanation
Indices: 87496122--87496165 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
87496112 TGTTTTTAAA
87496122 ATTATTTTTACTTATAAATTTT
1 ATTATTTTTACTTATAAATTTT
87496144 ATTATTTTTACTTATAAATTTT
1 ATTATTTTTACTTATAAATTTT
87496166 CTTTTATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTATTTTTACTTATAAATTTT
Found at i:87501394 original size:21 final size:20
Alignment explanation
Indices: 87501361--87501405 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
87501351 TAACCACAAG
*
87501361 TTGACCTATGTTGATCGACA
1 TTGACCTATGTTGATCAACA
* *
87501381 TTGACTTAGTGTTGATTAACA
1 TTGACCTA-TGTTGATCAACA
87501402 TTGA
1 TTGA
87501406 TAGATTAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (20 bp):
TTGACCTATGTTGATCAACA
Found at i:87504129 original size:52 final size:51
Alignment explanation
Indices: 87504021--87504168 Score: 237
Period size: 52 Copynumber: 2.9 Consensus size: 51
87504011 CCATGACAAC
*
87504021 AAGTGATAAGTGATAGCTTCGGCTACACTTATT-TGATCAAGAACAAGTGA
1 AAGTGATAAATGATAGCTTCGGCTACACTTATTCTGATCAAGAACAAGTGA
87504071 AAGTGATAAATGATAGCTTCGGCTACACTTATCTCTGATCAAGAACAAGTGA
1 AAGTGATAAATGATAGCTTCGGCTACACTTAT-TCTGATCAAGAACAAGTGA
* * *
87504123 AAGTGATAAATGATAGCTTCGACTACACCTA-TCTGATCAAGGACAA
1 AAGTGATAAATGATAGCTTCGGCTACACTTATTCTGATCAAGAACAA
87504169 ATGGCAAGTG
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
50 45 0.49
51 1 0.01
52 46 0.50
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (51 bp):
AAGTGATAAATGATAGCTTCGGCTACACTTATTCTGATCAAGAACAAGTGA
Found at i:87504213 original size:31 final size:31
Alignment explanation
Indices: 87504175--87504353 Score: 295
Period size: 31 Copynumber: 5.8 Consensus size: 31
87504165 ACAAATGGCA
* * *
87504175 AGTGAAAAGTAGTAGCTTCGACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
87504206 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
87504237 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
87504268 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
87504299 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
87504330 AGTGAATAGTGGTAGCTTCAGCTA
1 AGTGAAAAGTGGTAGCTTCGGCTA
87504354 TAAGTGACAA
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 139 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:87505955 original size:26 final size:26
Alignment explanation
Indices: 87505921--87505984 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
87505911 ATTTTACCTT
*
87505921 GTAAGATTTTGACAATTTTA-CTCGC-G
1 GTAAAATTTTGACAATTTTAGC-C-CTG
*
87505947 GTAAAATTTTGACGATTTTAGCCCTG
1 GTAAAATTTTGACAATTTTAGCCCTG
87505973 GTAAAATTTTGA
1 GTAAAATTTTGA
87505985 AAAAATTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 1 0.03
26 32 0.94
27 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (26 bp):
GTAAAATTTTGACAATTTTAGCCCTG
Found at i:87509818 original size:19 final size:18
Alignment explanation
Indices: 87509790--87509827 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
87509780 TTGAATTGTG
*
87509790 ATTGAAAGTGAATTTGAA
1 ATTGAAAGTGAATTAGAA
87509808 ATTGAAAAGTGAATTAGAA
1 ATTG-AAAGTGAATTAGAA
87509827 A
1 A
87509828 CCCTATTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (18 bp):
ATTGAAAGTGAATTAGAA
Found at i:87516012 original size:20 final size:19
Alignment explanation
Indices: 87515982--87516029 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
87515972 GGCTAAGGTT
87515982 TTCTTTTCTTTTCTTCTTC
1 TTCTTTTCTTTTCTTCTTC
* *
87516001 TTCTTCTTCTTTTTTTCTTT
1 TTCTT-TTCTTTTCTTCTTC
*
87516021 TTTTTTTCT
1 TTCTTTTCT
87516030 ATTTTTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (19 bp):
TTCTTTTCTTTTCTTCTTC
Found at i:87516034 original size:12 final size:11
Alignment explanation
Indices: 87515980--87516035 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
87515970 CGGGCTAAGG
*
87515980 TTTTC-TTTTC
1 TTTTCTTTTTT
*
87515990 TTTTCTTCTTCT
1 TTTTCTT-TTTT
* *
87516002 TCTTCTTCTTT
1 TTTTCTTTTTT
87516013 TTTTCTTTTTT
1 TTTTCTTTTTT
87516024 TTTTCTATTTTT
1 TTTTCT-TTTTT
87516036 GAATCTATCT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
10 5 0.14
11 18 0.50
12 13 0.36
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:87516776 original size:12 final size:12
Alignment explanation
Indices: 87516761--87516808 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
87516751 TATTTCTCTC
87516761 TTTATATTTATG
1 TTTATATTTATG
87516773 TTTATATTTTATG
1 TTTATA-TTTATG
** *
87516786 TATTATACCTATC
1 T-TTATATTTATG
87516799 TTTATATTTA
1 TTTATATTTA
87516809 CGCATGAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 13 0.45
13 11 0.38
14 5 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (12 bp):
TTTATATTTATG
Found at i:87517000 original size:22 final size:22
Alignment explanation
Indices: 87516975--87517016 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
87516965 TAACGTGCTA
* *
87516975 TTATTACTATTATTTTTATTTT
1 TTATTACCATTATTGTTATTTT
87516997 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
87517017 GTATTTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTT
Found at i:87517010 original size:25 final size:28
Alignment explanation
Indices: 87516982--87517042 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
87516972 CTATTATTAC
*
87516982 TATTATT-TT-TATTTT-TTATTACCAT
1 TATTATTATTGTATTTTGTTAATACCAT
*
87517007 TATTGTTATTGTATTTTGTTAATACCAT
1 TATTATTATTGTATTTTGTTAATACCAT
87517035 TATTATTA
1 TATTATTA
87517043 CTACTTCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 6 0.20
26 2 0.07
27 6 0.20
28 16 0.53
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (28 bp):
TATTATTATTGTATTTTGTTAATACCAT
Found at i:87530326 original size:25 final size:24
Alignment explanation
Indices: 87530284--87530330 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
87530274 ATTCAAGAAA
87530284 TTTTAAAATATTAGTTTATTTTAC
1 TTTTAAAATATTAGTTTATTTTAC
*
87530308 TTTTAAATATATTATTTTATTTT
1 TTTTAAA-ATATTAGTTTATTTT
87530331 TATTTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (24 bp):
TTTTAAAATATTAGTTTATTTTAC
Found at i:87540802 original size:6 final size:6
Alignment explanation
Indices: 87540791--87540885 Score: 56
Period size: 6 Copynumber: 15.7 Consensus size: 6
87540781 ATATAGTTCA
* * *
87540791 AAAAAT AAAAATT AAAAGT -ACAAG AA-AAT AAAAAT AAAAAT AAAACA-
1 AAAAAT AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT
* *
87540838 AAACAATT AAAAAT AACAAAA ATAAAAT -AAAAT -AAAAT AAAAAG AAAA
1 AAA-AA-T AAAAAT AA-AAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAA
87540886 CAAATAAAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
5 16 0.23
6 35 0.49
7 16 0.23
8 4 0.06
ACGTcount: A:0.78, C:0.04, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:87540828 original size:22 final size:21
Alignment explanation
Indices: 87540775--87540829 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
87540765 AGAAACAGCC
* *
87540775 ATAAAAAT-ATAGTTCAAAAA
1 ATAAAAATAAAAGTACAAAAA
87540795 ATAAAAATTAAAAGTACAAGAAA
1 ATAAAAA-TAAAAGTACAA-AAA
87540818 ATAAAAATAAAA
1 ATAAAAATAAAA
87540830 ATAAAACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 7 0.23
21 1 0.03
22 12 0.40
23 10 0.33
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (21 bp):
ATAAAAATAAAAGTACAAAAA
Found at i:87540858 original size:9 final size:9
Alignment explanation
Indices: 87540826--87540894 Score: 50
Period size: 10 Copynumber: 7.1 Consensus size: 9
87540816 AAATAAAAAT
87540826 AAAAATAAA
1 AAAAATAAA
* *
87540835 ACAAAACAATT
1 A-AAAATAA-A
*
87540846 AAAAATAAC
1 AAAAATAAA
87540855 AAAAATAAA
1 AAAAATAAA
87540864 ATAAAATAAA
1 A-AAAATAAA
87540874 ATAAAA-AGAA
1 A-AAAATA-AA
87540884 AACAAATAAA
1 AA-AAATAAA
87540894 A
1 A
87540895 TCTATGATTC
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
9 12 0.24
10 35 0.71
11 2 0.04
ACGTcount: A:0.80, C:0.06, G:0.01, T:0.13
Consensus pattern (9 bp):
AAAAATAAA
Found at i:87540895 original size:5 final size:5
Alignment explanation
Indices: 87540792--87540879 Score: 54
Period size: 5 Copynumber: 16.8 Consensus size: 5
87540782 TATAGTTCAA
* * *
87540792 AAAAT AAAAATT AAAAGT ACAAG AAAAT AAAAAT AAAAAT AAAAC AAAA-
1 AAAAT -AAAA-T AAAA-T AAAAT AAAAT -AAAAT -AAAAT AAAAT AAAAT
* * *
87540841 CAATT AAAAAT AACA- AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
87540880 AGAAAACAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
4 5 0.08
5 33 0.51
6 26 0.40
7 1 0.02
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:87548822 original size:34 final size:34
Alignment explanation
Indices: 87548776--87548845 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
87548766 ATCAATGACT
87548776 TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA
1 TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA
*
87548810 TGGTTTTGGGAATCTTGGAGCTTCTAAAGTATCA
1 TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA
87548844 TG
1 TG
87548846 CCCGTGTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (34 bp):
TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA
Found at i:87550952 original size:12 final size:12
Alignment explanation
Indices: 87550919--87550953 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
87550909 TGAGACAAAA
87550919 TATTCTTTAAAT
1 TATTCTTTAAAT
*
87550931 TACTCTTTTAAAT
1 TATTC-TTTAAAT
87550944 TATTCTTTAA
1 TATTCTTTAA
87550954 GTAACATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:87551072 original size:23 final size:22
Alignment explanation
Indices: 87551025--87551078 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
87551015 AAGTAGGTTG
*
87551025 TATATTATTTTTTGTAATATTA
1 TATATTATTTTTTGTAATATCA
*
87551047 TATATATATTTTTTATTAAT-TCA
1 TATAT-TATTTTTT-GTAATATCA
*
87551070 TATTTTATT
1 TATATTATT
87551079 AATTGTTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 9 0.33
23 14 0.52
24 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TATATTATTTTTTGTAATATCA
Found at i:87551388 original size:16 final size:16
Alignment explanation
Indices: 87551379--87551440 Score: 70
Period size: 16 Copynumber: 3.9 Consensus size: 16
87551369 CTATTACAGT
* *
87551379 TATATTCTATTATAAC
1 TATATTCCATTACAAC
* *
87551395 TCTATTCCATTACAAT
1 TATATTCCATTACAAC
* *
87551411 TCTATTCCATTACAGC
1 TATATTCCATTACAAC
87551427 TATATTCCATTACA
1 TATATTCCATTACA
87551441 CTAAACCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.44
Consensus pattern (16 bp):
TATATTCCATTACAAC
Found at i:87551417 original size:32 final size:32
Alignment explanation
Indices: 87551371--87551440 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
87551361 TTGAATTTCT
* * * *
87551371 ATTACAGTTATATTCTATTATAACTCTATTCC
1 ATTACAATTATATTCCATTACAACTATATTCC
* *
87551403 ATTACAATTCTATTCCATTACAGCTATATTCC
1 ATTACAATTATATTCCATTACAACTATATTCC
87551435 ATTACA
1 ATTACA
87551441 CTAAACCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.43
Consensus pattern (32 bp):
ATTACAATTATATTCCATTACAACTATATTCC
Found at i:87553853 original size:6 final size:6
Alignment explanation
Indices: 87553842--87553870 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
87553832 TAACTATATA
87553842 ATTTAT ATTTAT ATTTAT ATTT-T ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT
87553871 TATTAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTAT
Found at i:87556881 original size:50 final size:50
Alignment explanation
Indices: 87556806--87556905 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
87556796 CTCTCTATGC
87556806 ACAAGAGCAAAGAAGAACAAACAGAATGGAAGAGCACTCTGAAGGAGCTT
1 ACAAGAGCAAAGAAGAACAAACAGAATGGAAGAGCACTCTGAAGGAGCTT
*
87556856 ACAAGAGCAAAGAAGAGCAAACAGAATGGAAGAGCACTCTGAAGGAGCTT
1 ACAAGAGCAAAGAAGAACAAACAGAATGGAAGAGCACTCTGAAGGAGCTT
87556906 TTCAGGCTAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.47, C:0.16, G:0.27, T:0.10
Consensus pattern (50 bp):
ACAAGAGCAAAGAAGAACAAACAGAATGGAAGAGCACTCTGAAGGAGCTT
Found at i:87556936 original size:6 final size:6
Alignment explanation
Indices: 87556925--87556951 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
87556915 GGTGTAGAGA
87556925 AAGCTC AAGCTC AAGCTC AAGCTC AAG
1 AAGCTC AAGCTC AAGCTC AAGCTC AAG
87556952 TTATAAAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.30, G:0.19, T:0.15
Consensus pattern (6 bp):
AAGCTC
Found at i:87561279 original size:20 final size:20
Alignment explanation
Indices: 87561256--87561296 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
87561246 TCAATTGTTT
87561256 ATTGTTTGAA-TCGATTCAAA
1 ATTGTTT-AACTCGATTCAAA
*
87561276 ATTGTTTAACTCGATTTAAA
1 ATTGTTTAACTCGATTCAAA
87561296 A
1 A
87561297 CCCAACAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (20 bp):
ATTGTTTAACTCGATTCAAA
Found at i:87562876 original size:33 final size:33
Alignment explanation
Indices: 87562839--87562974 Score: 167
Period size: 33 Copynumber: 4.3 Consensus size: 33
87562829 GTCTGCTTTA
*
87562839 TGTTTCTCTATTTTCTGTTTCTGTACCGTGTTT
1 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
*
87562872 TGTTTCTTTATTTTCTGTTTCTGTACCATGTTT
1 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
* * *
87562905 TGTTCCTCTATTTTCTGTAGT-GGT----T-TTT
1 TGTTTCTCTATTTTCTGT-TTCTGTACCATGTTT
87562933 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
1 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
*
87562966 TGTTCCTCT
1 TGTTTCTCT
87562975 TGCCATTTTT
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
27 1 0.01
28 22 0.26
29 1 0.01
32 1 0.01
33 60 0.70
34 1 0.01
ACGTcount: A:0.07, C:0.18, G:0.14, T:0.61
Consensus pattern (33 bp):
TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
Found at i:87562877 original size:18 final size:17
Alignment explanation
Indices: 87562854--87562908 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
87562844 CTCTATTTTC
87562854 TGTTTCTGTACCGTGTTT
1 TGTTTCTGTACC-TGTTT
*
87562872 TGTTTCTTTA--T-TTT
1 TGTTTCTGTACCTGTTT
87562886 CTGTTTCTGTACCATGTTT
1 -TGTTTCTGTACC-TGTTT
87562905 TGTT
1 TGTT
87562909 CCTCTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.07, C:0.15, G:0.16, T:0.62
Consensus pattern (17 bp):
TGTTTCTGTACCTGTTT
Found at i:87562920 original size:27 final size:28
Alignment explanation
Indices: 87562889--87562950 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
87562879 TTATTTTCTG
87562889 TTTCTGTA-CCATGTTTTGTTCCTCTAT
1 TTTCTGTAGCCATGTTTTGTTCCTCTAT
*** * *
87562916 TTTCTGTAGTGGTTTTTTGTTTCTCTAT
1 TTTCTGTAGCCATGTTTTGTTCCTCTAT
87562944 TTTCTGT
1 TTTCTGT
87562951 TTCTGTACCA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.08, C:0.16, G:0.15, T:0.61
Consensus pattern (28 bp):
TTTCTGTAGCCATGTTTTGTTCCTCTAT
Found at i:87564069 original size:21 final size:22
Alignment explanation
Indices: 87564043--87564098 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 22
87564033 AGTTTCCCCC
87564043 GTTTGCAGTGGCTATACAA-TT
1 GTTTGCAGTGGCTATACAATTT
*
87564064 GTTTGCAGTGGCTATATAATTT
1 GTTTGCAGTGGCTATACAATTT
*
87564086 ATTTGCAGTGGCT
1 GTTTGCAGTGGCT
87564099 CCATCTGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.41
Consensus pattern (22 bp):
GTTTGCAGTGGCTATACAATTT
Found at i:87567554 original size:11 final size:11
Alignment explanation
Indices: 87567538--87567564 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
87567528 TAGAAATTAG
87567538 TTTGTGAAACT
1 TTTGTGAAACT
87567549 TTTGTGAAACT
1 TTTGTGAAACT
87567560 TTTGT
1 TTTGT
87567565 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:87569097 original size:93 final size:92
Alignment explanation
Indices: 87568965--87569159 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
87568955 TTGATTTTAG
* *
87568965 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
87569029 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
87569057 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
87569122 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
87569150 CAAATTCATA
1 TAAATTCATA
87569160 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:87569217 original size:17 final size:17
Alignment explanation
Indices: 87569192--87569225 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87569182 ATAATTTTAA
*
87569192 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
87569209 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
87569226 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:87569227 original size:15 final size:16
Alignment explanation
Indices: 87569192--87569230 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
87569182 ATAATTTTAA
*
87569192 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
87569209 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
87569224 ATTTAAT
1 ATTTAAT
87569231 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:87569234 original size:17 final size:18
Alignment explanation
Indices: 87569196--87569235 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
87569186 TTTTAAATTT
*
87569196 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
87569214 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
87569230 TATTAA
1 TATTAA
87569236 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:87569350 original size:15 final size:15
Alignment explanation
Indices: 87569315--87569449 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
87569305 TTAAGAATTT
*
87569315 TATTAAATTAT-ATA
1 TATTTAATTATAATA
87569329 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
87569343 TATTTAATAATAAT-
1 TATTTAATTATAATA
87569357 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
87569371 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
*
87569386 TATTATGATTTGAGTAAATTCA
1 TATT-T-AATT-A-T-AA-T-A
*
87569408 TATTAAATTAT-ATA
1 TATTTAATTATAATA
87569422 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
87569436 TATTTAATAATAAT
1 TATTTAATTATAAT
87569450 TATGTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 17 0.18
15 32 0.34
16 3 0.03
17 2 0.02
18 3 0.03
19 2 0.02
20 4 0.04
21 1 0.01
22 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:87569357 original size:120 final size:119
Alignment explanation
Indices: 87569191--87569409 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
87569181 AATAATTTTA
* *
87569191 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATATTAATTAT-TTGAAATTT-TCTTT
1 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTT--AATTTATATTT
*
87569254 TATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
64 TACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
*
87569310 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTTAATTTATATTT
1 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATAATAATTATGTTAATTTATATTT
87569374 TACAGTATCATATATTATGATTTGAGTAAATTCATA
64 TACAGTATCATATATTATGATTTGAGTAAATTCATA
87569410 TTAAATTATA
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 23 0.25
120 64 0.70
121 5 0.05
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTTAATTTATATTTTA
CAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
Found at i:87569438 original size:16 final size:16
Alignment explanation
Indices: 87569417--87569458 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
87569407 ATATTAAATT
*
87569417 ATATATTTTAATTATA
1 ATATATTTTAATAATA
87569433 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
87569448 AT-TATGTTTAA
1 ATATAT-TTTAA
87569459 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:87569566 original size:154 final size:156
Alignment explanation
Indices: 87569408--87569705 Score: 537
Period size: 154 Copynumber: 1.9 Consensus size: 156
87569398 AGTAAATTCA
*
87569408 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
87569473 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
87569536 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
87569562 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
* *
87569627 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTATCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
87569692 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
87569706 GGGTATTCTA
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 59 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:87569586 original size:18 final size:17
Alignment explanation
Indices: 87569558--87569592 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87569548 ATTATTAAGA
*
87569558 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
87569575 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
87569593 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:87569846 original size:16 final size:16
Alignment explanation
Indices: 87569825--87569863 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
87569815 TTGATTTGCT
*
87569825 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
87569841 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
87569857 ATTACAC
1 ATTACAC
87569864 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:87569864 original size:16 final size:16
Alignment explanation
Indices: 87569838--87569894 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
87569828 ACACAGCTTT
* *
87569838 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
87569854 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
87569870 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
87569886 TCCAATACA
1 TCCAATACA
87569895 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:87573389 original size:21 final size:21
Alignment explanation
Indices: 87573346--87573401 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
87573336 AAGCAGATGG
*
87573346 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAA-CAATTATAT
*
87573368 AGCCACTGCAAACAATTGTAT
1 AGCCACTGCAAACAATTATAT
87573389 AGCCACTGCAAAC
1 AGCCACTGCAAAC
87573402 GGGGGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.21
Consensus pattern (21 bp):
AGCCACTGCAAACAATTATAT
Found at i:87574512 original size:33 final size:33
Alignment explanation
Indices: 87574470--87574605 Score: 167
Period size: 33 Copynumber: 4.3 Consensus size: 33
87574460 AAAAATGGCA
*
87574470 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
**
87574503 AGAGAAACAAAA-A----ACCA-CTACAGAAAAT
1 AGAGAAACAAAACATGGTA-CAGAAACAGAAAAT
*
87574531 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
* *
87574564 AAAGAAACAAAACACGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
87574597 AGAGAAACA
1 AGAGAAACA
87574606 TAAAGCAGAC
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
28 21 0.24
29 3 0.03
32 3 0.03
33 59 0.69
ACGTcount: A:0.61, C:0.14, G:0.18, T:0.07
Consensus pattern (33 bp):
AGAGAAACAAAACATGGTACAGAAACAGAAAAT
Found at i:87574589 original size:18 final size:17
Alignment explanation
Indices: 87574536--87574590 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
87574526 AAAATAGAGG
87574536 AACAAAACATGGTACAGA
1 AACAAAACA-GGTACAGA
*
87574554 AACAGAAA-A--TAAAGA
1 AACA-AAACAGGTACAGA
87574569 AACAAAACACGGTACAGA
1 AACAAAACA-GGTACAGA
87574587 AACA
1 AACA
87574591 GAAAATAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.62, C:0.16, G:0.15, T:0.07
Consensus pattern (17 bp):
AACAAAACAGGTACAGA
Found at i:87575137 original size:11 final size:11
Alignment explanation
Indices: 87575121--87575147 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
87575111 GCCCCGTTAG
87575121 TTTGTGAAACT
1 TTTGTGAAACT
87575132 TTTGTGAAACT
1 TTTGTGAAACT
87575143 TTTGT
1 TTTGT
87575148 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:87576680 original size:93 final size:92
Alignment explanation
Indices: 87576548--87576742 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
87576538 TTGATTTTAG
* *
87576548 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
87576612 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
87576640 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
87576705 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
87576733 CAAATTCATA
1 TAAATTCATA
87576743 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:87576800 original size:17 final size:17
Alignment explanation
Indices: 87576775--87576808 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87576765 ATAATTTTAA
*
87576775 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
87576792 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
87576809 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:87576810 original size:15 final size:16
Alignment explanation
Indices: 87576775--87576813 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
87576765 ATAATTTTAA
*
87576775 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
87576792 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
87576807 ATTTAAT
1 ATTTAAT
87576814 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:87576817 original size:17 final size:18
Alignment explanation
Indices: 87576779--87576818 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
87576769 TTTTAAATTT
*
87576779 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
87576797 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
87576813 TATTAA
1 TATTAA
87576819 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:87576933 original size:15 final size:15
Alignment explanation
Indices: 87576898--87577032 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
87576888 TTAAGAATTT
*
87576898 TATTAAATTAT-ATA
1 TATTTAATTATAATA
87576912 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
87576926 TATTTAATAATAAT-
1 TATTTAATTATAATA
87576940 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
87576954 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
*
87576969 TATTATGATTTGAGTAAATTCA
1 TATT-T-AATT-A-T-AA-T-A
*
87576991 TATTAAATTAT-ATA
1 TATTTAATTATAATA
87577005 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
87577019 TATTTAATAATAAT
1 TATTTAATTATAAT
87577033 TATGTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 17 0.18
15 32 0.34
16 3 0.03
17 2 0.02
18 3 0.03
19 2 0.02
20 4 0.04
21 1 0.01
22 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:87576940 original size:120 final size:119
Alignment explanation
Indices: 87576774--87576992 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
87576764 AATAATTTTA
* *
87576774 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATATTAATTAT-TTGAAATTT-TCTTT
1 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTT--AATTTATATTT
*
87576837 TATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
64 TACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
*
87576893 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTTAATTTATATTT
1 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATAATAATTATGTTAATTTATATTT
87576957 TACAGTATCATATATTATGATTTGAGTAAATTCATA
64 TACAGTATCATATATTATGATTTGAGTAAATTCATA
87576993 TTAAATTATA
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 23 0.25
120 64 0.70
121 5 0.05
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTTAATTTATATTTTA
CAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
Found at i:87577021 original size:16 final size:16
Alignment explanation
Indices: 87577000--87577041 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
87576990 ATATTAAATT
*
87577000 ATATATTTTAATTATA
1 ATATATTTTAATAATA
87577016 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
87577031 AT-TATGTTTAA
1 ATATAT-TTTAA
87577042 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:87577149 original size:154 final size:156
Alignment explanation
Indices: 87576991--87577288 Score: 537
Period size: 154 Copynumber: 1.9 Consensus size: 156
87576981 AGTAAATTCA
*
87576991 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
87577056 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
87577119 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
87577145 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
* *
87577210 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTATCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
87577275 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
87577289 GGGTATTCTA
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 59 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:87577169 original size:18 final size:17
Alignment explanation
Indices: 87577141--87577175 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87577131 ATTATTAAGA
*
87577141 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
87577158 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
87577176 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:87577429 original size:16 final size:16
Alignment explanation
Indices: 87577408--87577446 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
87577398 TTGATTTGCT
*
87577408 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
87577424 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
87577440 ATTACAC
1 ATTACAC
87577447 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:87577447 original size:16 final size:16
Alignment explanation
Indices: 87577421--87577477 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
87577411 ACACAGCTTT
* *
87577421 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
87577437 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
87577453 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
87577469 TCCAATACA
1 TCCAATACA
87577478 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:87593603 original size:16 final size:16
Alignment explanation
Indices: 87593582--87593638 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
87593572 TTTGGTTCGC
*
87593582 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
87593598 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
87593614 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
87593630 TGTAATGGA
1 TGTAATGGA
87593639 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:87593905 original size:18 final size:17
Alignment explanation
Indices: 87593884--87593918 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87593874 TTATTATTAA
*
87593884 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
87593902 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
87593919 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:87594055 original size:16 final size:16
Alignment explanation
Indices: 87594018--87594059 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
87594008 TTAATCATAT
*
87594018 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
87594034 TT-AAATATATTATAA
1 TTAAAATATATTATAA
87594049 TTAAAATATAT
1 TTAAAATATAT
87594060 AATTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:87594061 original size:154 final size:156
Alignment explanation
Indices: 87593771--87594068 Score: 528
Period size: 154 Copynumber: 1.9 Consensus size: 156
87593761 TAGAATACCC
87593771 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
* *
87593836 TTATTAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
87593901 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
* * *
87593928 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
87593991 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
87594056 ATATAATTTAATA
131 ATATAATTTAATA
87594069 TGAATTTACT
Statistics
Matches: 136, Mismatches: 5, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
154 76 0.56
155 1 0.01
157 59 0.43
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:87594066 original size:14 final size:15
Alignment explanation
Indices: 87594027--87594161 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
87594017 TTTAAACATA
*
87594027 ATTATTATTAAATAT
1 ATTATAATTAAATAT
87594042 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
87594056 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
87594070 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
87594092 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
87594107 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
87594120 ATTATTATTAAATAT
1 ATTATAATTAAATAT
87594135 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
87594149 A-TATAATTTAATA
1 ATTATAATTAAATA
87594162 AAATTCTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 33
0.67 0.09 0.24
Matches are distributed among these distances:
12 3 0.03
13 22 0.24
14 16 0.17
15 30 0.33
16 5 0.05
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:87594125 original size:154 final size:155
Alignment explanation
Indices: 87593810--87594125 Score: 392
Period size: 154 Copynumber: 2.0 Consensus size: 155
87593800 ATTGTTATTG
*
87593810 TTATTTAAATTTTAATAAGATTATTATTATTAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTA-TATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
* *
87593875 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCATAAATT
65 TATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA-TAGCATAAATA
** * * *** **
87593940 TGTTTTGGTAAATTATTATTGTTATTG
129 TGTACTGGTAAAATATAATTAACATAA
87593967 TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAACATAATT
1 TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
* * *
87594030 ATTATTAAATATATTATAATTAAAATATATAATTTAATATGAA-T-TTACTCAA-ATCATAATAT
66 ATTATTAAATATATTATAATTAAAATATATAATTTAATA-AAATTCTTAAT-AATAGCATAA-AT
87594092 ATGATACT-GTAAAATATAAATTAACATAA
128 ATG-TACTGGTAAAATAT-AATTAACATAA
87594121 TTATT
1 TTATT
87594126 ATTAAATATA
Statistics
Matches: 139, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
152 6 0.04
153 16 0.12
154 91 0.65
155 3 0.02
157 23 0.17
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (155 bp):
TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATAGCATAAATATG
TACTGGTAAAATATAATTAACATAA
Found at i:87594176 original size:44 final size:43
Alignment explanation
Indices: 87594087--87594177 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
87594077 CTCAAATCAT
* * *
87594087 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
87594130 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
87594174 AATA
1 AATA
87594178 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:87594202 original size:120 final size:119
Alignment explanation
Indices: 87594067--87594285 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
87594057 TATAATTTAA
* * *
87594067 TATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-TT-AACATAATTATTATTA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTTCAA-ATAATTAATATTA
87594130 AATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
64 AATATGATT-TAATT-AAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
87594187 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
*
87594252 TATGATTTAATTAAATATATGATTTAATAAAATT
66 TATGATTTAATTAAATATATAATTTAATAAAATT
87594286 TAAAATTATT
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 24 0.26
120 63 0.68
121 5 0.05
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (119 bp):
TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
TATGATTTAATTAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
Found at i:87594266 original size:15 final size:15
Alignment explanation
Indices: 87594246--87594284 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
87594236 AATAATTAAT
87594246 ATTAAATATGATTTA
1 ATTAAATATGATTTA
87594261 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
87594278 ATAAAAT
1 ATTAAAT
87594285 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:87594271 original size:17 final size:17
Alignment explanation
Indices: 87594251--87594284 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87594241 TTAATATTAA
*
87594251 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
87594268 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
87594285 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:87594427 original size:93 final size:92
Alignment explanation
Indices: 87594317--87594511 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
87594307 GATTATAGTT
* * *
87594317 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
87594380 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
87594410 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
87594475 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
87594502 TATGAATTTA
1 TATGAATTTA
87594512 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:87595926 original size:11 final size:11
Alignment explanation
Indices: 87595912--87595938 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
87595902 AAAAATCAAT
87595912 ACAAAAGTTTC
1 ACAAAAGTTTC
87595923 ACAAAAGTTTC
1 ACAAAAGTTTC
87595934 ACAAA
1 ACAAA
87595939 CTAACGGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:87596491 original size:33 final size:33
Alignment explanation
Indices: 87596454--87596589 Score: 167
Period size: 33 Copynumber: 4.3 Consensus size: 33
87596444 GTCTGCTTTA
*
87596454 TGTTTCTCTATTTTCTGTTTCTGTACCGTGTTT
1 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
*
87596487 TGTTTCTTTATTTTCTGTTTCTGTACCATGTTT
1 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
* * *
87596520 TGTTCCTCTATTTTCTGTAGT-GGT----T-TTT
1 TGTTTCTCTATTTTCTGT-TTCTGTACCATGTTT
87596548 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
1 TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
*
87596581 TGTTCCTCT
1 TGTTTCTCT
87596590 TGCCATTTTT
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
27 1 0.01
28 22 0.26
29 1 0.01
32 1 0.01
33 60 0.70
34 1 0.01
ACGTcount: A:0.07, C:0.18, G:0.14, T:0.61
Consensus pattern (33 bp):
TGTTTCTCTATTTTCTGTTTCTGTACCATGTTT
Found at i:87596492 original size:18 final size:17
Alignment explanation
Indices: 87596469--87596523 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
87596459 CTCTATTTTC
87596469 TGTTTCTGTACCGTGTTT
1 TGTTTCTGTACC-TGTTT
*
87596487 TGTTTCTTTA--T-TTT
1 TGTTTCTGTACCTGTTT
87596501 CTGTTTCTGTACCATGTTT
1 -TGTTTCTGTACC-TGTTT
87596520 TGTT
1 TGTT
87596524 CCTCTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.07, C:0.15, G:0.16, T:0.62
Consensus pattern (17 bp):
TGTTTCTGTACCTGTTT
Found at i:87596535 original size:27 final size:28
Alignment explanation
Indices: 87596504--87596565 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
87596494 TTATTTTCTG
87596504 TTTCTGTA-CCATGTTTTGTTCCTCTAT
1 TTTCTGTAGCCATGTTTTGTTCCTCTAT
*** * *
87596531 TTTCTGTAGTGGTTTTTTGTTTCTCTAT
1 TTTCTGTAGCCATGTTTTGTTCCTCTAT
87596559 TTTCTGT
1 TTTCTGT
87596566 TTCTGTACCA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.08, C:0.16, G:0.15, T:0.61
Consensus pattern (28 bp):
TTTCTGTAGCCATGTTTTGTTCCTCTAT
Found at i:87597684 original size:21 final size:22
Alignment explanation
Indices: 87597658--87597713 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 22
87597648 AGTTTCCCCC
87597658 GTTTGCAGTGGCTATACAA-TT
1 GTTTGCAGTGGCTATACAATTT
*
87597679 GTTTGCAGTGGCTATATAATTT
1 GTTTGCAGTGGCTATACAATTT
*
87597701 ATTTGCAGTGGCT
1 GTTTGCAGTGGCT
87597714 CCATCTGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.41
Consensus pattern (22 bp):
GTTTGCAGTGGCTATACAATTT
Found at i:87601186 original size:16 final size:16
Alignment explanation
Indices: 87601165--87601221 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
87601155 TTTGGTTCGC
*
87601165 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
87601181 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
87601197 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
87601213 TGTAATGGA
1 TGTAATGGA
87601222 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:87601488 original size:18 final size:17
Alignment explanation
Indices: 87601467--87601501 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
87601457 TTATTATTAA
*
87601467 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
87601485 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
87601502 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:87601638 original size:16 final size:16
Alignment explanation
Indices: 87601601--87601642 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
87601591 TTAATCATAT
*
87601601 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
87601617 TT-AAATATATTATAA
1 TTAAAATATATTATAA
87601632 TTAAAATATAT
1 TTAAAATATAT
87601643 AATTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:87601639 original size:154 final size:156
Alignment explanation
Indices: 87601354--87601651 Score: 537
Period size: 154 Copynumber: 1.9 Consensus size: 156
87601344 TAGAATACCC
87601354 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
87601419 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
87601484 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
* * *
87601511 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
87601574 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
87601639 ATATAATTTAATA
131 ATATAATTTAATA
87601652 TGAATTTACT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 77 0.56
155 1 0.01
157 59 0.43
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGATAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:87601649 original size:14 final size:15
Alignment explanation
Indices: 87601610--87601744 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
87601600 TTTAAACATA
*
87601610 ATTATTATTAAATAT
1 ATTATAATTAAATAT
87601625 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
87601639 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
87601653 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
87601675 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
87601690 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
87601703 ATTATTATTAAATAT
1 ATTATAATTAAATAT
87601718 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
87601732 A-TATAATTTAATA
1 ATTATAATTAAATA
87601745 AAATTCTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 33
0.67 0.09 0.24
Matches are distributed among these distances:
12 3 0.03
13 22 0.24
14 16 0.17
15 30 0.33
16 5 0.05
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:87601708 original size:154 final size:155
Alignment explanation
Indices: 87601393--87601708 Score: 401
Period size: 154 Copynumber: 2.0 Consensus size: 155
87601383 ATTGTTATTG
87601393 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTA-TATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
* *
87601458 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCATAAATT
65 TATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA-TAGCATAAATA
** * * *** **
87601523 TGTTTTGGTAAATTATTATTGTTATTG
129 TGTACTGGTAAAATATAATTAACATAA
87601550 TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAACATAATT
1 TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
* * *
87601613 ATTATTAAATATATTATAATTAAAATATATAATTTAATATGAA-T-TTACTCAA-ATCATAATAT
66 ATTATTAAATATATTATAATTAAAATATATAATTTAATA-AAATTCTTAAT-AATAGCATAA-AT
87601675 ATGATACT-GTAAAATATAAATTAACATAA
128 ATG-TACTGGTAAAATAT-AATTAACATAA
87601704 TTATT
1 TTATT
87601709 ATTAAATATA
Statistics
Matches: 140, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
152 6 0.04
153 16 0.11
154 92 0.66
155 3 0.02
157 23 0.16
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (155 bp):
TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATAGCATAAATATG
TACTGGTAAAATATAATTAACATAA
Found at i:87601759 original size:44 final size:43
Alignment explanation
Indices: 87601670--87601760 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
87601660 CTCAAATCAT
* * *
87601670 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
87601713 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
87601757 AATA
1 AATA
87601761 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:87601785 original size:120 final size:119
Alignment explanation
Indices: 87601650--87601868 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
87601640 TATAATTTAA
* * *
87601650 TATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-TT-AACATAATTATTATTA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTTCAA-ATAATTAATATTA
87601713 AATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
64 AATATGATT-TAATT-AAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
87601770 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
*
87601835 TATGATTTAATTAAATATATGATTTAATAAAATT
66 TATGATTTAATTAAATATATAATTTAATAAAATT
87601869 TAAAATTATT
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 24 0.26
120 63 0.68
121 5 0.05
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (119 bp):
TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
TATGATTTAATTAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
Found at i:87601849 original size:15 final size:15
Alignment explanation
Indices: 87601829--87601867 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
87601819 AATAATTAAT
87601829 ATTAAATATGATTTA
1 ATTAAATATGATTTA
87601844 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
87601861 ATAAAAT
1 ATTAAAT
87601868 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:87601854 original size:17 final size:17
Alignment explanation
Indices: 87601834--87601867 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87601824 TTAATATTAA
*
87601834 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
87601851 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
87601868 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:87601980 original size:92 final size:92
Alignment explanation
Indices: 87601900--87602093 Score: 277
Period size: 92 Copynumber: 2.1 Consensus size: 92
87601890 GATTATAGTT
* * *
87601900 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
87601963 ATAAAATTCTTGATAATAAAATTTTCTTA
64 ATAAAATTCTTAATAATAAAATTTACTTA
* *
87601992 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
87602057 AAAATTCTTAATAATAAAATGTT-CTTA
66 AAAATTCTTAATAATAAAAT-TTACTTA
87602084 TATGAATTTA
1 TATGAATTTA
87602094 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
92 87 0.94
93 6 0.06
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATTTACTTA
Found at i:87603506 original size:11 final size:11
Alignment explanation
Indices: 87603492--87603518 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
87603482 AAAAATCAAT
87603492 ACAAAAGTTTC
1 ACAAAAGTTTC
87603503 ACAAAAGTTTC
1 ACAAAAGTTTC
87603514 ACAAA
1 ACAAA
87603519 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:87607001 original size:21 final size:21
Alignment explanation
Indices: 87606958--87607013 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
87606948 AAGCAGATGG
*
87606958 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAA-CAATTATAT
*
87606980 AGCCACTGCAAACAATTGTAT
1 AGCCACTGCAAACAATTATAT
87607001 AGCCACTGCAAAC
1 AGCCACTGCAAAC
87607014 GGGGGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.21
Consensus pattern (21 bp):
AGCCACTGCAAACAATTATAT
Found at i:87608123 original size:33 final size:33
Alignment explanation
Indices: 87608081--87608216 Score: 167
Period size: 33 Copynumber: 4.3 Consensus size: 33
87608071 AAAAATGGCA
*
87608081 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
**
87608114 AGAGAAACAAAA-A----ACCA-CTACAGAAAAT
1 AGAGAAACAAAACATGGTA-CAGAAACAGAAAAT
*
87608142 AGAGGAACAAAACATGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
* *
87608175 AAAGAAACAAAACACGGTACAGAAACAGAAAAT
1 AGAGAAACAAAACATGGTACAGAAACAGAAAAT
87608208 AGAGAAACA
1 AGAGAAACA
87608217 TAAAGCAGAC
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
28 21 0.24
29 3 0.03
32 3 0.03
33 59 0.69
ACGTcount: A:0.61, C:0.14, G:0.18, T:0.07
Consensus pattern (33 bp):
AGAGAAACAAAACATGGTACAGAAACAGAAAAT
Found at i:87608200 original size:18 final size:17
Alignment explanation
Indices: 87608147--87608201 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
87608137 AAAATAGAGG
87608147 AACAAAACATGGTACAGA
1 AACAAAACA-GGTACAGA
*
87608165 AACAGAAA-A--TAAAGA
1 AACA-AAACAGGTACAGA
87608180 AACAAAACACGGTACAGA
1 AACAAAACA-GGTACAGA
87608198 AACA
1 AACA
87608202 GAAAATAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.10
15 10 0.33
18 14 0.47
19 3 0.10
ACGTcount: A:0.62, C:0.16, G:0.15, T:0.07
Consensus pattern (17 bp):
AACAAAACAGGTACAGA
Found at i:87608914 original size:23 final size:24
Alignment explanation
Indices: 87608882--87608933 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
87608872 ATTATTCATT
**
87608882 TTTTATTTTTTTAA-TTTAACTACA
1 TTTTATTTTTAAAATTTTAA-TACA
87608906 TTTTA-TTTTAAAATTTTAATACA
1 TTTTATTTTTAAAATTTTAATACA
87608929 TTTTA
1 TTTTA
87608934 AATAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTATTTTTAAAATTTTAATACA
Done.