Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 272 of 320
Found at i:87925889 original size:19 final size:18
Alignment explanation
Indices: 87925841--87925897 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
87925831 AATTTCAGTA
* *
87925841 TTTTATATTTTTAGAATT
1 TTTTCTATTTTTATAATT
*
87925859 CTTTTTTA-TTTTATAATT
1 -TTTTCTATTTTTATAATT
87925877 TTTCTCTATTTTTAATAATT
1 TTT-TCTATTTTT-ATAATT
87925897 T
1 T
87925898 AAAAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.09
18 12 0.38
19 10 0.31
20 7 0.22
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTCTATTTTTATAATT
Found at i:87925981 original size:9 final size:9
Alignment explanation
Indices: 87925967--87925993 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
87925957 TAAAAAAAAT
87925967 TATTTTTTA
1 TATTTTTTA
87925976 TATTTTTTA
1 TATTTTTTA
87925985 TATTTTTTA
1 TATTTTTTA
87925994 AAATAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TATTTTTTA
Found at i:87926021 original size:19 final size:19
Alignment explanation
Indices: 87925997--87926040 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
87925987 TTTTTTAAAA
87925997 TAATTTT-AATACTTTTTTG
1 TAATTTTAAAT-CTTTTTTG
*
87926016 TAATTTTTAAATTTTTTTTG
1 TAA-TTTTAAATCTTTTTTG
87926036 TAATT
1 TAATT
87926041 CTACATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 5 0.23
20 14 0.64
21 3 0.14
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (19 bp):
TAATTTTAAATCTTTTTTG
Found at i:87926050 original size:20 final size:20
Alignment explanation
Indices: 87926009--87926052 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
87925999 ATTTTAATAC
*
87926009 TTTTTTGTAATTTTTAAATT
1 TTTTTTGTAATTTCTAAATT
*
87926029 TTTTTTGTAA-TTCTACATT
1 TTTTTTGTAATTTCTAAATT
87926048 TTTTT
1 TTTTT
87926053 CTATTTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTTTGTAATTTCTAAATT
Found at i:87926081 original size:20 final size:20
Alignment explanation
Indices: 87926009--87926083 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 20
87925999 ATTTTAATAC
87926009 TTTTTTGTAATTTTTAAATT
1 TTTTTTGTAATTTTTAAATT
* *
87926029 TTTTTTGTAA-TTCTACA-T
1 TTTTTTGTAATTTTTAAATT
* * **
87926047 TTTTTTCTATTTTTTGTATT
1 TTTTTTGTAATTTTTAAATT
*
87926067 TTTTTTGTAACTTTTAA
1 TTTTTTGTAATTTTTAA
87926084 GGTTTGTTCC
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
18 9 0.22
19 9 0.22
20 23 0.56
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTTTTGTAATTTTTAAATT
Found at i:87930227 original size:60 final size:60
Alignment explanation
Indices: 87930134--87930246 Score: 167
Period size: 60 Copynumber: 1.9 Consensus size: 60
87930124 TCTACACCAC
* *
87930134 ATTCTTCTCCAGTTGATGCTTGTTCTAATTCCCATTCAGCTCCTGGCAATACTCAGATTG
1 ATTCTTCTCCAGCTGATGCATGTTCTAATTCCCATTCAGCTCCTGGCAATACTCAGATTG
*
87930194 ATTCTTCTCCAGCT-ACTGCATGTTC-AGATTCCCATTCAGCTCCTGGCAGTACT
1 ATTCTTCTCCAGCTGA-TGCATGTTCTA-ATTCCCATTCAGCTCCTGGCAATACT
87930247 TAAGTTGTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
59 2 0.04
60 46 0.96
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.36
Consensus pattern (60 bp):
ATTCTTCTCCAGCTGATGCATGTTCTAATTCCCATTCAGCTCCTGGCAATACTCAGATTG
Found at i:87935809 original size:93 final size:93
Alignment explanation
Indices: 87935657--87935828 Score: 229
Period size: 93 Copynumber: 1.8 Consensus size: 93
87935647 TACCACATTA
* *
87935657 CTCTCCTATTTCTAGTGAGACTATTGGTTCCAGGCTTAATGCCAGTGTTGAACCCTCTTCTGATA
1 CTCTCCTATTTCTAGTGAGAATATTGGTTCCAGGCCTAATGCCAGTGTTGAACCCTCTTCTGATA
*
87935722 CTCAGGCACCATTGCATGTGTCACGTAG
66 ATCAGGCACCATTGCATGTGTCACGTAG
* * * * * * * *
87935750 CTCTCCTATGTT-TGGTGAGAATGTTGGTTCTAGGCCTAATGCTAGTTTTGAGCCTTCTTCTGCT
1 CTCTCCTAT-TTCTAGTGAGAATATTGGTTCCAGGCCTAATGCCAGTGTTGAACCCTCTTCTGAT
87935814 AATCAGGCACCATTG
65 AATCAGGCACCATTG
87935829 TTACTTATGA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
93 65 0.97
94 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (93 bp):
CTCTCCTATTTCTAGTGAGAATATTGGTTCCAGGCCTAATGCCAGTGTTGAACCCTCTTCTGATA
ATCAGGCACCATTGCATGTGTCACGTAG
Found at i:87941852 original size:23 final size:22
Alignment explanation
Indices: 87941800--87941854 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
87941790 TCGCTCGCCT
* *
87941800 TTAAAAATT-AAAATTATTTAA
1 TTAAAAATTAAAAATAATTAAA
*
87941821 TATATAAATTAAAAATAATATAAA
1 T-TAAAAATTAAAAATAAT-TAAA
87941845 TTAAAAATTA
1 TTAAAAATTA
87941855 GCTATATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 1 0.04
22 7 0.26
23 15 0.56
24 4 0.15
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAAATTAAAAATAATTAAA
Found at i:87941860 original size:18 final size:16
Alignment explanation
Indices: 87941822--87941852 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
87941812 ATTATTTAAT
87941822 ATATAAATTAAAAATA
1 ATATAAATTAAAAATA
87941838 ATATAAATTAAAAAT
1 ATATAAATTAAAAAT
87941853 TAGCTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATATAAATTAAAAATA
Found at i:87942021 original size:26 final size:26
Alignment explanation
Indices: 87941955--87942015 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
87941945 TATTTAAAAT
87941955 AATTA-GATAAAATTTGAAATCTTGAA
1 AATTATGA-AAAATTTGAAATCTTGAA
* *
87941981 AATTATTAAAAATTTGAAATCTTTAA
1 AATTATGAAAAATTTGAAATCTTGAA
87942007 AATT-TGAAA
1 AATTATGAAA
87942016 TTATTTAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.13
26 26 0.84
27 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (26 bp):
AATTATGAAAAATTTGAAATCTTGAA
Found at i:87942022 original size:17 final size:17
Alignment explanation
Indices: 87941966--87942023 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
87941956 ATTAGATAAA
*
87941966 ATTTGAAATCTTGAAAATT
1 ATTTAAAAT-TTG-AAATT
*
87941985 ATTAAAAATTTGAAA-T
1 ATTTAAAATTTGAAATT
*
87942001 CTTTAAAATTTGAAATT
1 ATTTAAAATTTGAAATT
87942018 ATTTAA
1 ATTTAA
87942024 TATATAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 14 0.42
17 9 0.27
18 3 0.09
19 7 0.21
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (17 bp):
ATTTAAAATTTGAAATT
Found at i:87942838 original size:7 final size:7
Alignment explanation
Indices: 87942826--87942932 Score: 54
Period size: 7 Copynumber: 15.1 Consensus size: 7
87942816 ATTAATTAAT
87942826 CTAAACC
1 CTAAACC
87942833 CTAAACC
1 CTAAACC
* *
87942840 TTTAACC
1 CTAAACC
* *
87942847 CTTATCC
1 CTAAACC
* *
87942854 TATAAACA
1 -CTAAACC
*
87942862 CTAAACT
1 CTAAACC
87942869 CTAAACC
1 CTAAACC
*
87942876 CTTAACCC
1 C-TAAACC
*
87942884 CTAACCC
1 CTAAACC
*
87942891 CTACACC
1 CTAAACC
* **
87942898 TTAAATT
1 CTAAACC
87942905 CT-AACC
1 CTAAACC
87942911 CTAAACC
1 CTAAACC
* *
87942918 ATAATCC
1 CTAAACC
87942925 CTAAACC
1 CTAAACC
87942932 C
1 C
87942933 ATAATCCATC
Statistics
Matches: 72, Mismatches: 25, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
6 4 0.06
7 59 0.82
8 9 0.12
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.24
Consensus pattern (7 bp):
CTAAACC
Found at i:87942928 original size:14 final size:15
Alignment explanation
Indices: 87942909--87942939 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87942899 TAAATTCTAA
87942909 CCCTAAA-CCATAAT
1 CCCTAAACCCATAAT
87942923 CCCTAAACCCATAAT
1 CCCTAAACCCATAAT
87942938 CC
1 CC
87942940 ATCATAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.39, C:0.42, G:0.00, T:0.19
Consensus pattern (15 bp):
CCCTAAACCCATAAT
Found at i:87943129 original size:7 final size:7
Alignment explanation
Indices: 87943117--87943224 Score: 65
Period size: 7 Copynumber: 15.1 Consensus size: 7
87943107 ATTAATTAAT
87943117 CTAAACC
1 CTAAACC
87943124 CTAAACTC
1 CTAAAC-C
*
87943132 CTAATCC
1 CTAAACC
**
87943139 CTAATTC
1 CTAAACC
*
87943146 CTAAACT
1 CTAAACC
*
87943153 ATAAACC
1 CTAAACC
* *
87943160 TTAAATC
1 CTAAACC
*
87943167 CTAAAAC
1 CTAAACC
*
87943174 ATAAACC
1 CTAAACC
*
87943181 CTTAACCC
1 C-TAAACC
87943189 CTAAACC
1 CTAAACC
*
87943196 C-CAACC
1 CTAAACC
87943202 CTTAAACC
1 C-TAAACC
* *
87943210 ATAACCC
1 CTAAACC
87943217 CTAAACC
1 CTAAACC
87943224 C
1 C
87943225 ATAATACATA
Statistics
Matches: 75, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
6 5 0.07
7 54 0.72
8 16 0.21
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:87943191 original size:22 final size:22
Alignment explanation
Indices: 87943148--87943193 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
87943138 CCTAATTCCT
*
87943148 AAACTATAAACCTTAAATCCTA
1 AAACTATAAACCTTAAACCCTA
*
87943170 AAAC-ATAAACCCTTAACCCCTA
1 AAACTATAAA-CCTTAAACCCTA
87943192 AA
1 AA
87943194 CCCCAACCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (22 bp):
AAACTATAAACCTTAAACCCTA
Found at i:87943485 original size:41 final size:41
Alignment explanation
Indices: 87943416--87943561 Score: 222
Period size: 41 Copynumber: 3.6 Consensus size: 41
87943406 TGTTTTTTGC
87943416 GGCGTTTTTCCAAAAGCG-CGCTAAAACCTCGATCTATAGT
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
* *
87943456 GGCGCTTTTCCAAAAGTGCCGCTAAAACCTCGATCTATAGT
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
** *
87943497 GGCGTTTTTTTAAAAGCGCCGCTAAAACCTCGATCTATAGC
1 GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
* *
87943538 GGCGTTTTTCTAAAAGCGCTGCTA
1 GGCGTTTTTCCAAAAGCGCCGCTA
87943562 TTGTTCAGTT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 16 0.17
41 80 0.83
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (41 bp):
GGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
Found at i:87943602 original size:41 final size:41
Alignment explanation
Indices: 87943549--87943656 Score: 153
Period size: 41 Copynumber: 2.6 Consensus size: 41
87943539 GCGTTTTTCT
* * *
87943549 AAAAGCGCTGCTATTGTTCAGTTTTTAACGGCGTTTGGACA
1 AAAAACGCTGCTATTGCTCAGTTTTTAACGGCGTTTGAACA
* *
87943590 AAAAACGCTGCTATTGCTCAGTTTTTAGCGGCGTTTGAACC
1 AAAAACGCTGCTATTGCTCAGTTTTTAACGGCGTTTGAACA
* *
87943631 GAAAACGCCGCTATTGCTCAGTTTTT
1 AAAAACGCTGCTATTGCTCAGTTTTT
87943657 TGAGGCGTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (41 bp):
AAAAACGCTGCTATTGCTCAGTTTTTAACGGCGTTTGAACA
Found at i:87946170 original size:19 final size:19
Alignment explanation
Indices: 87946146--87946183 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
87946136 AATTTTTAAC
87946146 AAAAATGACCAAAATGAAT
1 AAAAATGACCAAAATGAAT
*
87946165 AAAAATTACCAAAATGAAT
1 AAAAATGACCAAAATGAAT
87946184 TGCGATCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.63, C:0.11, G:0.08, T:0.18
Consensus pattern (19 bp):
AAAAATGACCAAAATGAAT
Found at i:87949993 original size:18 final size:18
Alignment explanation
Indices: 87949970--87950006 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
87949960 CATTGGAAGG
87949970 TTAGCATAATTCCTTGGC
1 TTAGCATAATTCCTTGGC
87949988 TTAGCATAATTCCTTGGC
1 TTAGCATAATTCCTTGGC
87950006 T
1 T
87950007 ATTCCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (18 bp):
TTAGCATAATTCCTTGGC
Found at i:87951587 original size:42 final size:42
Alignment explanation
Indices: 87951486--87951767 Score: 307
Period size: 42 Copynumber: 6.6 Consensus size: 42
87951476 TTATGTAAAA
* *
87951486 AAACGCAGCTATAGAACATGACCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGC-TTTTCCAC
* *
87951529 AAACGCCACTATAGAACATGACCTTTAGCGGCGCTTTACCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCAC
* * * ** *
87951571 AAATGCCGCTAAAGAACATGACTTTTAATGGTGCTTTTCCTAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCC-AC
* * * *
87951614 AAACGCCGCTAAATAACATGACCTTTAACAGCGCTTTTCTCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTC-CAC
* *
87951657 AAACGCCGCTATAGAACAT-ACCTTTAGTGGCGCTTTTGCTAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTT-CCAC
* * * *
87951699 AAATGGCACTATAGAATA-GACCTTTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTC-CAC
* *
87951741 AAACGCCACTAAAGAACATGACCTTTA
1 AAACGCCGCTATAGAACATGACCTTTA
87951768 AAAAATATTT
Statistics
Matches: 199, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 103 0.52
43 94 0.47
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCAC
Found at i:87951648 original size:85 final size:86
Alignment explanation
Indices: 87951486--87951768 Score: 340
Period size: 85 Copynumber: 3.3 Consensus size: 86
87951476 TTATGTAAAA
* * ** *
87951486 AAACGCAGCTATAGAACATGACCTTTAGCGGCACTTTTTCC-ACAAACGCCACTATAGAACATGA
1 AAACGCCGCTAAAGAACATGACCTTTAATGGCGC-TTTTCCTACAAACGCCACTATAGAACATGA
*
87951550 CCTTTAGCGGCGCTTTAC-CAC
65 CCTTTAGCGGCGCTTTTCTCAC
* * * * * *
87951571 AAATGCCGCTAAAGAACATGACTTTTAATGGTGCTTTTCCTACAAACGCCGCTAAATAACATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAATGGCGCTTTTCCTACAAACGCCACTATAGAACATGAC
* *
87951636 CTTTAACAGCGCTTTTCTCAC
66 CTTTAGCGGCGCTTTTCTCAC
* * * * * *
87951657 AAACGCCGCTATAGAACAT-ACCTTTAGTGGCGCTTTTGCTACAAATGGCACTATAGAATA-GAC
1 AAACGCCGCTAAAGAACATGACCTTTAATGGCGCTTTTCCTACAAACGCCACTATAGAACATGAC
87951720 CTTTAGCGGCGCTTTTCTCAC
66 CTTTAGCGGCGCTTTTCTCAC
*
87951741 AAACGCCACTAAAGAACATGACCTTTAA
1 AAACGCCGCTAAAGAACATGACCTTTAA
87951769 AAAATATTTT
Statistics
Matches: 164, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
84 45 0.27
85 99 0.60
86 20 0.12
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (86 bp):
AAACGCCGCTAAAGAACATGACCTTTAATGGCGCTTTTCCTACAAACGCCACTATAGAACATGAC
CTTTAGCGGCGCTTTTCTCAC
Found at i:87954303 original size:11 final size:12
Alignment explanation
Indices: 87954276--87954300 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
87954266 ATAATAAGGC
87954276 TTAATTTTTATA
1 TTAATTTTTATA
87954288 TTAATTTTTATA
1 TTAATTTTTATA
87954300 T
1 T
87954301 AATAAACCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTAATTTTTATA
Found at i:87955260 original size:115 final size:113
Alignment explanation
Indices: 87955086--87955425 Score: 378
Period size: 115 Copynumber: 3.0 Consensus size: 113
87955076 GAAATCAACC
* * * * *
87955086 TTTGCGGCGTTTATC-CACTAGCGCCACTAAATCCCTACATATTGCGGCGTTTAACCAAAAAACG
1 TTTGCGGCATTTTTCAC-CTAGCGCCGCTAAAGCCCAACATATTGCGGCGTTTAA-C-AAAAACG
* *
87955150 CCACTAAAAAACCTATAAAAAGGCACTGTTTTGATTAAAACAAAATAACAT
63 CCACTAAAAAACCAATAAAACGGCACTGTTTTGATTAAAACAAAATAACAT
* *
87955201 TTTGCGGCATTTTTCACCTAGCGCCGCTAAAGCCCGACCTATTGCGGCGTTTTAACAAAAACGCC
1 TTTGCGGCATTTTTCACCTAGCGCCGCTAAAGCCCAACATATTGCGGCG-TTTAACAAAAACGCC
* * * *
87955266 ACTAAAAAATCAAATAAAACGGCATTGTTTTGATTAAAACAGAATAACTT
65 ACTAAAAAA-CCAATAAAACGGCACTGTTTTGATTAAAACAAAATAACAT
** * ** *
87955316 TTTGCGGTGTTTTTTCA-CTAGCGCCGCTAAAGCCTAACATATTGCGGCGTTTCGCCAAAAGCGC
1 TTTGCGG-CATTTTTCACCTAGCGCCGCTAAAGCCCAACATATTGCGGCGTTT-AACAAAAACGC
* * * * *
87955380 CACTAAGAAATCCAATAGAACGGCGCCGTTTTTATTAAAACAAAAT
64 CACTAA-AAAACCAATAAAACGGCACTGTTTTGATTAAAACAAAAT
87955426 TATTTTTGCA
Statistics
Matches: 191, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
114 21 0.11
115 154 0.81
116 16 0.08
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (113 bp):
TTTGCGGCATTTTTCACCTAGCGCCGCTAAAGCCCAACATATTGCGGCGTTTAACAAAAACGCCA
CTAAAAAACCAATAAAACGGCACTGTTTTGATTAAAACAAAATAACAT
Found at i:87956334 original size:22 final size:21
Alignment explanation
Indices: 87956283--87956383 Score: 87
Period size: 21 Copynumber: 4.8 Consensus size: 21
87956273 ACCCTTATCC
*
87956283 CCTAACCCTTAAATCATAAAA
1 CCTAACCCTTAAACCATAAAA
* * *
87956304 CATAACCCTTAAACCGTGAACA
1 CCTAACCCTTAAACCAT-AAAA
* *
87956326 CCTAACCCTTAAACCTTAAAC
1 CCTAACCCTTAAACCATAAAA
* *
87956347 CCCAACCCCTAAACCAT-AAA
1 CCTAACCCTTAAACCATAAAA
* *
87956367 CCATAAACCATAAACCA
1 CC-TAACCCTTAAACCA
87956384 CAATCCATAA
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
20 4 0.06
21 41 0.65
22 18 0.29
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.18
Consensus pattern (21 bp):
CCTAACCCTTAAACCATAAAA
Found at i:87956380 original size:21 final size:21
Alignment explanation
Indices: 87956356--87956436 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
87956346 CCCCAACCCC
87956356 TAAACCATAAACCATAAACCA
1 TAAACCATAAACCATAAACCA
* * * *
87956377 TAAACCACAATCCATAAGCCT
1 TAAACCATAAACCATAAACCA
*
87956398 TAAA--ATAGTAACTCATAAACCC
1 TAAACCATA--AAC-CATAAACCA
* *
87956420 TAAACCCTAAACTATAA
1 TAAACCATAAACCATAA
87956437 TGATAATTAA
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
19 2 0.04
21 27 0.60
22 14 0.31
24 2 0.04
ACGTcount: A:0.51, C:0.27, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCA
Found at i:87956383 original size:7 final size:7
Alignment explanation
Indices: 87956356--87956393 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
87956346 CCCCAACCCC
87956356 TAAACCA
1 TAAACCA
87956363 TAAACCA
1 TAAACCA
87956370 TAAACCA
1 TAAACCA
87956377 TAAACCA
1 TAAACCA
* *
87956384 CAATCCA
1 TAAACCA
87956391 TAA
1 TAA
87956394 GCCTTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCA
Found at i:87956898 original size:95 final size:95
Alignment explanation
Indices: 87956730--87956910 Score: 245
Period size: 95 Copynumber: 1.9 Consensus size: 95
87956720 CAGATAAAAT
* * * * * * ***
87956730 ATTTTTTGCGGCGTTTTTGACAAAGTGCTGCTAAAGCTTGATCTATAATGGTGTTTTTCAAAAAG
1 ATTTTTTGCGGCGTTTTTCAAAAAGCGCCGCTAAAGCTAGATCTATAACGGCAATTTTCAAAAAG
**
87956795 CGTTGCTAATGCCACTAAAGCCCTTACTGA
66 CGCCGCTAATGCCACTAAAGCCCTTACTGA
* *
87956825 ATTTTTTGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAACGGCAATTTTCAAAAAT
1 ATTTTTTGCGGCGTTTTTCAAAAAGCGCCGCTAAAGCTAGATCTATAACGGCAATTTTCAAAAAG
87956890 CGCCGCTAATGCCACTAAAGC
66 CGCCGCTAATGCCACTAAAGC
87956911 TCAACATAAA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (95 bp):
ATTTTTTGCGGCGTTTTTCAAAAAGCGCCGCTAAAGCTAGATCTATAACGGCAATTTTCAAAAAG
CGCCGCTAATGCCACTAAAGCCCTTACTGA
Found at i:87957026 original size:40 final size:41
Alignment explanation
Indices: 87956948--87957079 Score: 96
Period size: 40 Copynumber: 3.3 Consensus size: 41
87956938 AATTTTTTTA
* * * * *
87956948 CGGC-GTTTTTCAAAAAGCACCGCTAA-TGATCAACCTATAG
1 CGGCTGTTTTTAAAAAAGCGCCTCTAACT-ATCGATCTATAG
* * * *
87956988 CGGCT-TTTTTAAAAAAGCGCCAT-TAATTCTTGATCTATAA
1 CGGCTGTTTTTAAAAAAGCGCC-TCTAACTATCGATCTATAG
* *
87957028 CTG-TGTTTTTCAAAAAGCGCCTCTAACTATCGATCTATAG
1 CGGCTGTTTTTAAAAAAGCGCCTCTAACTATCGATCTATAG
87957068 CGGC-GCTTTTTA
1 CGGCTG-TTTTTA
87957080 TCCAAACGCC
Statistics
Matches: 69, Mismatches: 16, Indels: 13
0.70 0.16 0.13
Matches are distributed among these distances:
39 2 0.03
40 61 0.88
41 6 0.09
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (41 bp):
CGGCTGTTTTTAAAAAAGCGCCTCTAACTATCGATCTATAG
Found at i:87967073 original size:28 final size:26
Alignment explanation
Indices: 87967024--87967075 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 26
87967014 ACTTTTTACA
87967024 TTTAAATTTTAATTATCTTACTTTAT
1 TTTAAATTTTAATTATCTTACTTTAT
87967050 TTTAAATAATTTAATATATC-TACTTT
1 TTTAAAT--TTTAAT-TATCTTACTTT
87967076 TTGTATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 7 0.30
28 12 0.52
29 4 0.17
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTAAATTTTAATTATCTTACTTTAT
Found at i:87967140 original size:14 final size:14
Alignment explanation
Indices: 87967123--87967156 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
87967113 TTAATTACAT
87967123 TTTAAAAATTAAAA
1 TTTAAAAATTAAAA
*
87967137 TTTAAAGATTAAAA
1 TTTAAAAATTAAAA
87967151 TTTAAA
1 TTTAAA
87967157 TTTAAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
TTTAAAAATTAAAA
Found at i:87969407 original size:19 final size:19
Alignment explanation
Indices: 87969380--87969416 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
87969370 AATAACAAAG
*
87969380 AGTGATTGGTTGATTTCCA
1 AGTGATTGGTTGACTTCCA
*
87969399 AGTGGTTGGTTGACTTCC
1 AGTGATTGGTTGACTTCC
87969417 GAATTAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.14, G:0.30, T:0.41
Consensus pattern (19 bp):
AGTGATTGGTTGACTTCCA
Found at i:87971212 original size:30 final size:30
Alignment explanation
Indices: 87971178--87971240 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
87971168 ACTTAACAAG
*
87971178 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAAAAACAAAATTAA
87971208 CAAATGCCTTTAAAATAAAAACAAAATTAA
1 CAAATGCCTTTAAAATAAAAACAAAATTAA
87971238 CAA
1 CAA
87971241 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAAAAACAAAATTAA
Found at i:87975610 original size:18 final size:18
Alignment explanation
Indices: 87975589--87975624 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
87975579 AAACAACAAG
87975589 CTAATGTAACAATTAAAT
1 CTAATGTAACAATTAAAT
*
87975607 CTAATGTAACGATTAAAT
1 CTAATGTAACAATTAAAT
87975625 GTGTGGAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.33
Consensus pattern (18 bp):
CTAATGTAACAATTAAAT
Found at i:87976121 original size:15 final size:16
Alignment explanation
Indices: 87976072--87976124 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
87976062 TATTTAAAAC
87976072 ATTTTATATTTATATAA
1 ATTTTATA-TTATATAA
*
87976089 CTTGTTATATTA-AT-A
1 ATT-TTATATTATATAA
87976104 ATTTT-TATTATATAA
1 ATTTTATATTATATAA
87976119 ATTTTA
1 ATTTTA
87976125 ACATGTTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 5 0.17
14 4 0.13
15 9 0.30
16 2 0.07
17 5 0.17
18 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (16 bp):
ATTTTATATTATATAA
Found at i:87982418 original size:38 final size:39
Alignment explanation
Indices: 87982334--87982468 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
87982324 ACCAATATGG
*
87982334 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
87982373 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
87982411 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
87982452 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
87982469 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:87984050 original size:5 final size:5
Alignment explanation
Indices: 87984032--87984062 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
87984022 TTTCTTTTAT
87984032 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
87984063 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:87987716 original size:9 final size:9
Alignment explanation
Indices: 87987689--87987790 Score: 50
Period size: 9 Copynumber: 11.3 Consensus size: 9
87987679 ATATTTAATT
*
87987689 AATTTTTAA
1 AATTTTAAA
87987698 AATTTT-AA
1 AATTTTAAA
87987706 AATTTTAAA
1 AATTTTAAA
** *
87987715 AA-AATAAT
1 AATTTTAAA
*
87987723 TATTTT-AA
1 AATTTTAAA
87987731 AA-TTTAAA
1 AATTTTAAA
*
87987739 AATCATTAAA
1 AAT-TTTAAA
*
87987749 ATTATTTAAA
1 AAT-TTTAAA
*
87987759 AATTATAAA
1 AATTTTAAA
**
87987768 AATTATTTTTA
1 AA-T-TTTAAA
87987779 AATTTTAAA
1 AATTTTAAA
87987788 AAT
1 AAT
87987791 AATTAAATGT
Statistics
Matches: 67, Mismatches: 19, Indels: 14
0.67 0.19 0.14
Matches are distributed among these distances:
7 3 0.04
8 18 0.27
9 25 0.37
10 16 0.24
11 5 0.07
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTTTAAA
Found at i:87987716 original size:17 final size:17
Alignment explanation
Indices: 87987692--87987768 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 17
87987682 TTTAATTAAT
87987692 TTTTAAAATTTT-AAAA
1 TTTTAAAATTTTAAAAA
*** **
87987708 TTTTAAAAAAATAATTA
1 TTTTAAAATTTTAAAAA
87987725 TTTTAAAA-TTTAAAAA
1 TTTTAAAATTTTAAAAA
*
87987741 TCATTAAAATTATTTAAAAA
1 T-TTTAAAA-T-TTTAAAAA
*
87987761 TTATAAAA
1 TTTTAAAA
87987769 ATTATTTTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
16 14 0.32
17 16 0.36
19 5 0.11
20 9 0.20
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTTAAAATTTTAAAAA
Found at i:87987740 original size:8 final size:8
Alignment explanation
Indices: 87987693--87987771 Score: 50
Period size: 8 Copynumber: 9.2 Consensus size: 8
87987683 TTAATTAATT
*
87987693 TTTAAAAT
1 TTTAAAAA
*
87987701 TTTAAAAT
1 TTTAAAAA
87987709 TTTAAAAA
1 TTTAAAAA
** **
87987717 AATAATTA
1 TTTAAAAA
*
87987725 TTTTAAAA
1 TTTAAAAA
87987733 TTTAAAAA
1 TTTAAAAA
87987741 TCATTAAAATTA
1 T--TTAAAA--A
87987753 TTTAAAAA
1 TTTAAAAA
87987761 TTATAAAAA
1 TT-TAAAAA
87987770 TT
1 TT
87987772 ATTTTTAAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
8 33 0.60
9 8 0.15
10 12 0.22
12 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (8 bp):
TTTAAAAA
Found at i:87987749 original size:10 final size:10
Alignment explanation
Indices: 87987734--87987797 Score: 53
Period size: 9 Copynumber: 6.5 Consensus size: 10
87987724 ATTTTAAAAT
*
87987734 TTAAAAATCA
1 TTAAAAATTA
87987744 TT-AAAATTA
1 TTAAAAATTA
87987753 TTTAAAAATTA
1 -TTAAAAATTA
87987764 -TAAAAATTA
1 TTAAAAATTA
**
87987773 TTTTTAAATT-
1 -TTAAAAATTA
*
87987783 TTAAAAATAA
1 TTAAAAATTA
87987793 TTAAA
1 TTAAA
87987798 TGTTGACATG
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
9 21 0.49
10 9 0.21
11 13 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:87987781 original size:20 final size:20
Alignment explanation
Indices: 87987732--87987790 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
87987722 TTATTTTAAA
* *
87987732 ATTTAAAAATCATTAAAATT
1 ATTTAAAAATTATAAAAATT
87987752 ATTTAAAAATTATAAAAATT
1 ATTTAAAAATTATAAAAATT
** *
87987772 ATTTTTAAATTTTAAAAAT
1 ATTTAAAAATTATAAAAAT
87987791 AATTAAATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAAAAATTATAAAAATT
Found at i:87987988 original size:32 final size:32
Alignment explanation
Indices: 87987927--87987988 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
87987917 AAGTAAATAA
* * *
87987927 AAAATTAAAATAACATTTTTTTGACAAAAATT
1 AAAATAAAAATAACATTTTTTTAAAAAAAATT
*
87987959 AAAATAAAAATAACTTTTTTTTAAAAAAAA
1 AAAATAAAAATAACATTTTTTTAAAAAAAA
87987989 AGTAAAGAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (32 bp):
AAAATAAAAATAACATTTTTTTAAAAAAAATT
Found at i:87990256 original size:21 final size:21
Alignment explanation
Indices: 87990232--87990275 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
87990222 GCAAAGTCTA
87990232 AGAAGAA-TG-GAAGCCAAGAGG
1 AGAAGAAGTGAGAAG-CAA-AGG
87990253 AGAAGAAGTGAGAAGCAAAGG
1 AGAAGAAGTGAGAAGCAAAGG
87990274 AG
1 AG
87990276 TTCGAGAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 12 0.57
22 5 0.24
23 4 0.19
ACGTcount: A:0.50, C:0.07, G:0.39, T:0.05
Consensus pattern (21 bp):
AGAAGAAGTGAGAAGCAAAGG
Found at i:87996424 original size:29 final size:31
Alignment explanation
Indices: 87996372--87996429 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
87996362 TTAATTATTT
*
87996372 AATTATCAACAAAATTACATTTTAATCACAA
1 AATTATCAACAAAATTACAATTTAATCACAA
*
87996403 AATTAT-AA-AAAATTATAATTTAATCAC
1 AATTATCAACAAAATTACAATTTAATCAC
87996430 TTAATTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 17 0.68
30 2 0.08
31 6 0.24
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (31 bp):
AATTATCAACAAAATTACAATTTAATCACAA
Found at i:87996435 original size:29 final size:29
Alignment explanation
Indices: 87996361--87996455 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
87996351 AAACTACATT
* * * *
87996361 TTTAATTATTTAATTATCAACAAAATTACAT
1 TTTAATCACTTAATTAT-AA-AAAATTATAA
**
87996392 TTTAATCACAAAATTATAAAAAATTATAA
1 TTTAATCACTTAATTATAAAAAATTATAA
** *
87996421 TTTAATCACTTAATTATTCAAAATTGATTA
1 TTTAATCACTTAATTATAAAAAATT-ATAA
87996451 TTTAA
1 TTTAA
87996456 GTCATATCTT
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
29 29 0.56
30 10 0.19
31 13 0.25
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.43
Consensus pattern (29 bp):
TTTAATCACTTAATTATAAAAAATTATAA
Found at i:87998029 original size:27 final size:27
Alignment explanation
Indices: 87997988--87998040 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
87997978 ACCCGAATGG
*
87997988 GTCGAGCCTGTCAGGTAGGCACGACTA
1 GTCGAGCCTGACAGGTAGGCACGACTA
* *
87998015 GTCGCGCCTGACAGGTAGGCTCGACT
1 GTCGAGCCTGACAGGTAGGCACGACT
87998041 GCCACGTCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (27 bp):
GTCGAGCCTGACAGGTAGGCACGACTA
Found at i:87999406 original size:30 final size:30
Alignment explanation
Indices: 87999370--87999428 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
87999360 TTAGTAAAAA
*
87999370 TAAAATTATACTTTAA-CTTCTTAAAAATGT
1 TAAAATTATAATTTAATCTT-TTAAAAATGT
87999400 TAAAATTATAATTTAATCTTTTAAAAATG
1 TAAAATTATAATTTAATCTTTTAAAAATG
87999429 ATATTTTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (30 bp):
TAAAATTATAATTTAATCTTTTAAAAATGT
Found at i:87999426 original size:22 final size:24
Alignment explanation
Indices: 87999401--87999461 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 24
87999391 TAAAAATGTT
87999401 AAAATTATAATTTAATCT-TT-TA
1 AAAATTATAATTTAATCTATTATA
* * *
87999423 AAAATGATATTTTTA-CTATTATA
1 AAAATTATAATTTAATCTATTATA
87999446 AAAATTATAATTTAAT
1 AAAATTATAATTTAAT
87999462 TTTAACTCCT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 2 0.07
22 14 0.47
23 14 0.47
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
AAAATTATAATTTAATCTATTATA
Found at i:88002929 original size:48 final size:48
Alignment explanation
Indices: 88002858--88002953 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
88002848 AGAGGCCAAG
* * *
88002858 GGCTTTTCTTGTTGTTTCTGCTGCACTTTTTCTTTCTTTGAAACATTA
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
88002906 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
88002954 CTTTCATCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.14, C:0.21, G:0.15, T:0.51
Consensus pattern (48 bp):
GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTA
Found at i:88003176 original size:793 final size:790
Alignment explanation
Indices: 88001314--88003620 Score: 3984
Period size: 793 Copynumber: 2.9 Consensus size: 790
88001304 AGAGGCCAAG
*
88001314 GGCTTTTCTTGTTGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
* *
88001379 GCAATGATACCAATATAACTTAAAGCTGAAAAGTTACCACAAGATCTCGAATTTCTTGTAGATTG
66 GCAATGATACCAATATAACTT-AAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTG
* * *
88001444 TATATGAAACCCCAAATATAAGCATCGTAAGCGTAATATGGAGCCCATGTTACTTGGATGTGAGT
130 TATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGT
* * *
88001509 ATTGGATACGGACATGTTATTCAGTATGCTTGATTTCTTCTCAGCTTTATCATATATTTAGAGCA
195 ATTGGATACGGACATGTAATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCA
*
88001574 TTATTGGAAACAAATACCGGATATCAAACTCTTAAAAGAAAGTTTTTCTTTCCCAAAGATATCCT
260 TTATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAG-------
** *
88001639 ATATCTAATATTTGATAGAGGTGGGGGAAAAGATTAGTCTACACTGAAGAACACTGCATAAAACA
318 ATATCTAATATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACA
88001704 ACTCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGA
383 ACTCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGA
* * *
88001769 GATGCAATTGAGTATGCTCAAATCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACC
448 GATGCGATTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACC
* * *
88001834 TCTATACTCTCTATACTCATTTCCAAATATGTGATCAGACATAAATATTGACATCAATATTTTAG
513 TCTATACTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAA
*
88001899 AAGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAACATAGATGTAG
578 AAGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAG
*
88001964 GGAGAAAAAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTGCAACAG
643 GGAG-AAAAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAG
*
88002029 TTGCTGCAAGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTTCAC
707 TTGCTGCAAGCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTGCAC
88002094 TTCTTTCTTTGAAACATTA
772 TTCTTTCTTTGAAACATTA
* *
88002113 GGCTTTTCTTGTAGTTTCTCCTGCACTTTTTCTTCCTCTGAAACGTTACTTTCATCTTCCGAACT
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
* *
88002178 GCAATGATACCGATATAACTTAAGCTGAAAAGTTCCCACAAGTTCTAGAATTTCTTGTAGATTGT
66 GCAATGATACCAATATAACTTAAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
* *
88002243 ATATGAAACCCCAACTATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGCA
131 ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGTA
*
88002308 TTGGATACGGACATGTAATCGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
196 TTGGATACGGACATGTAATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
88002373 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGATATCTAA
261 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGATATCTAA
88002438 TATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAACTCAAAT
326 TATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAACTCAAAT
* * * *
88002503 ATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGGGTGTCAAATATGGAAATTCGAT
391 ATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAGATGCGAT
* *
88002568 TGAGCATGCTCGATTCTTCTTAGTTCTTTCATTTACTTGGAGCATCATATTCATACCTCTATACT
456 TGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCTCTATACT
* * *
88002633 CACTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAACCTTTTAAAAGAAGGT
521 CTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAAAGAAAGT
88002698 CTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGGGAGAAAA
586 CTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGGGAGAAAA
88002763 GAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGTTGCTGCAA
651 GAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGTTGCTGCAA
*
88002828 GCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTGTTGTTTCTGCTGCACTTTTTCTTT
716 GCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTGCAC---TTCTTT
88002893 CTTTGAAACATTA
778 CTTTGAAACATTA
*
88002906 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCTGAACT
1 GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
*
88002971 GCAATGATACCAATATAACTTCAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
66 GCAATGATACCAATATAACTTAAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
*
88003036 ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAACCCATGTTACTTGGATATGAGTA
131 ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGTA
* * *
88003101 TTGGATACGGACATGTGATTGAGTATGCTTGATTTCTTGTCAGTTTTCTCATATATTTAGAGCAT
196 TTGGATACGGACATGTAATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
88003166 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGATATGCTA
261 TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGATAT-CTA
* *
88003231 TATCTAATATGTGATAAAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATACAACAA
325 -A--T-AT-T-TGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAA
*
88003296 CCCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAG
384 CTCAAATATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAG
*
88003361 ATGCGATTGAGTATGCTCGATTCTTCTTAGTTTTTTAATTTACTTGGAGCATCATATTCATACCT
449 ATGCGATTGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCT
*
88003426 CTATCCTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAA
514 CTATACTCTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAA
88003491 AGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGG
579 AGAAAGTCTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGG
88003556 GAGAAGAAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGT
644 GAGAA-AAGAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGT
88003621 AGCACAACGC
Statistics
Matches: 1431, Mismatches: 66, Indels: 20
0.94 0.04 0.01
Matches are distributed among these distances:
790 122 0.09
791 310 0.22
793 327 0.23
794 3 0.00
795 1 0.00
797 1 0.00
798 220 0.15
799 83 0.06
800 305 0.21
801 59 0.04
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (790 bp):
GGCTTTTCTTGTAGTTTCTGCTGCACTTTTTCTTCCTCTGAAACATTACTTTCATCTTCCGAACT
GCAATGATACCAATATAACTTAAGCTGAAAAGTTCCCACAAGATCTAGAATTTCTTGTAGATTGT
ATATGAAACCCCAAATATAAGCATCGTAAGCATAATATGCAGCCCATGTTACTTGGATATGAGTA
TTGGATACGGACATGTAATTGAGTATGCTTGATTTCTTCTCAGTTTTATCATATATTTAGAGCAT
TATTGGAAACAAATACCGGATATCAAACTTTTAAAAGAAAGTTTTTCTTTCCCAAAGATATCTAA
TATTTGATAGAGGTGGGGGAAAAGAGAAGTCTACACTGAAGAAAACTGCATAAAACAACTCAAAT
ATATGCATCATAAGTGCAGCCTATGTTAATTGGACATGAGTGAGTGTCAGATATGGAGATGCGAT
TGAGTATGCTCGATTCTTCTTAGTTTTTTCATTTACTTGGAGCATCATATTCATACCTCTATACT
CTCTATACTCATTTCCAAATATGTGATCAGACACAAATATTGACATCAATCTTTTAAAAGAAAGT
CTTTCTTGCCCAAAGATCTACTTATATCTAATTTTTGATACAGTAGCATAGATGTAGGGAGAAAA
GAGAAACATACTCTGAACAACAACAGCAGAATCTTTTCAAGCTGCAGTTCCAACAGTTGCTGCAA
GCTGATTTCGATTTCAATGCAGAGGCCAAGGGCTTTTCTTCTTGTTTCTGCTGCACTTCTTTCTT
TGAAACATTA
Found at i:88003677 original size:30 final size:30
Alignment explanation
Indices: 88003615--88003684 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
88003605 CTGCAGTTCC
* * **
88003615 AACAGTAGCACAACGCACAGCTATAATTAG
1 AACAGTAGCACAAAGCACAGCTACAACCAG
* *
88003645 AACAGTAGCAGAAAGCCCAGCTACAACCAG
1 AACAGTAGCACAAAGCACAGCTACAACCAG
*
88003675 AACAGGAGCA
1 AACAGTAGCA
88003685 TGATGGCCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.26, G:0.20, T:0.10
Consensus pattern (30 bp):
AACAGTAGCACAAAGCACAGCTACAACCAG
Found at i:88006801 original size:36 final size:36
Alignment explanation
Indices: 88006761--88006835 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
88006751 CTCTTTCACC
88006761 TTTTATATTTCAAAATTCAAACTCAACTTTTTTATA
1 TTTTATATTTCAAAATTCAAACTCAACTTTTTTATA
*
88006797 TTTTATATTTCAAAATTTAAACTCAACTTTTTTATA
1 TTTTATATTTCAAAATTCAAACTCAACTTTTTTATA
88006833 TTT
1 TTT
88006836 CAAAACAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (36 bp):
TTTTATATTTCAAAATTCAAACTCAACTTTTTTATA
Found at i:88013896 original size:18 final size:18
Alignment explanation
Indices: 88013873--88013908 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
88013863 TATATATTTT
88013873 ATTTTCTTCTATCAATAA
1 ATTTTCTTCTATCAATAA
* *
88013891 ATTTTCTTTTATTAATAA
1 ATTTTCTTCTATCAATAA
88013909 TAATAGCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTCTTCTATCAATAA
Found at i:88014127 original size:2 final size:2
Alignment explanation
Indices: 88014115--88014167 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
88014105 CATGATATCT
*
88014115 TC TC AC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
88014157 TC TC TC TC TC T
1 TC TC TC TC TC T
88014168 TTTTTCTAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:88019285 original size:9 final size:9
Alignment explanation
Indices: 88019271--88019295 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
88019261 TTTCAAATGT
88019271 TTTATTTTC
1 TTTATTTTC
88019280 TTTATTTTC
1 TTTATTTTC
88019289 TTTATTT
1 TTTATTT
88019296 AATTGTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTC
Found at i:88024947 original size:23 final size:25
Alignment explanation
Indices: 88024921--88024969 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
88024911 TGAATTTTTA
*
88024921 TATTGTTATTG-TG-TTTTTACTGT
1 TATTATTATTGTTGATTTTTACTGT
*
88024944 TATTATTATTGTTGATTTTTATTGT
1 TATTATTATTGTTGATTTTTACTGT
88024969 T
1 T
88024970 TTTTGTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 10 0.45
24 2 0.09
25 10 0.45
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.67
Consensus pattern (25 bp):
TATTATTATTGTTGATTTTTACTGT
Found at i:88025129 original size:39 final size:38
Alignment explanation
Indices: 88025006--88025135 Score: 140
Period size: 39 Copynumber: 3.4 Consensus size: 38
88024996 AAAAAAAACC
* * *
88025006 TTATTATTATTGCTAGTAAAAAGCCTTATTATTGTTAG
1 TTATTATTATTGTTAGTAAAAAACCCTATTATTGTTAG
88025044 TTATTATTATTGTTAGTAAAAAA--CTATTATTAGGATT-G
1 TTATTATTATTGTTAGTAAAAAACCCTATTATT--G-TTAG
* *
88025082 TTGCTTATTATTGTTAGTAAAAAACCCCAATTATTGTTAG
1 TT-ATTATTATTGTTAGTAAAAAA-CCCTATTATTGTTAG
*
88025122 TTATTATTGTTGTT
1 TTATTATTATTGTT
88025136 GATTTATATT
Statistics
Matches: 77, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
36 7 0.09
38 25 0.32
39 34 0.44
40 4 0.05
42 7 0.09
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.48
Consensus pattern (38 bp):
TTATTATTATTGTTAGTAAAAAACCCTATTATTGTTAG
Found at i:88027844 original size:53 final size:53
Alignment explanation
Indices: 88027649--88027856 Score: 195
Period size: 55 Copynumber: 3.8 Consensus size: 53
88027639 ATTAGGGTTT
* ** *
88027649 AAGGATACCATGTAAGACCATGCCAAGGCATCACAATTGGTAAGGTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * **
88027704 AAGGATACCATGTAAGACCATGTCAAGACAAGGCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * * *
88027759 AA-AAGTCCCATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGA-TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
** * *
88027812 AAGGATACCATGTAAGACCATATCTAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
88027857 TCAAAAGGAC
Statistics
Matches: 122, Mismatches: 26, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 9 0.07
55 68 0.56
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:88028116 original size:16 final size:16
Alignment explanation
Indices: 88028095--88028125 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88028085 ATAAATTTGA
88028095 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
88028111 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
88028126 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:88030545 original size:520 final size:520
Alignment explanation
Indices: 88029564--88030598 Score: 1628
Period size: 520 Copynumber: 2.0 Consensus size: 520
88029554 CGATGTCCCT
* * * * *
88029564 GATGATATTAATGATGAAGACGTGAATTTCGATGGAAACATTAACGCGTTTTTGGTCGGGAATCA
1 GATGATATTAACGATGAAGACGTGAATTTCGATGGAAACATTAACGCGTCTTCGATAGGGAATCA
* * * *
88029629 TATGCGATGTATTGTGATACATAATAATCCTGGGCCACACACGTCGCTTATAAACCCTGATGCGG
66 TATGCGACGTATTGTGATACACAATAATCCTGGGCCACACACGTCGCTAATAAACCCTGACGCGG
* * * * * *
88029694 CGCATGTAGCTGAGTTCTCAGAGTATCCTGAAATACTTTCCGTTCACCGGCTGGCCTTAAATTTT
131 CGCATGTAGCTGAGTTCCCAAAGTATCCTGAAATACGTTCCGCTCACCGGCTGGCCATAAATTTC
* * *
88029759 GATCCTAAGGAGTTTTTCGTAGGCCAGAGATTCAAAAGTAAAGAAGAGCGAGTATTTGCTATTAA
196 GATCCTAAGGAGTTGTTCGTAGGCCAGAAATTCAAAAGTAAAGAAGAGCGAGTATTTACTATTAA
*
88029824 GCGGTATAGCATGAATAAATCAATGGATTACAAAGTTGCAGTGTCTAAATCAACATTATATATTA
261 GCGGTATAGCATAAATAAATCAATGGATTACAAAGTTGCAGTGTCTAAATCAACATTATATATTA
*
88029889 GGGAGTGGTGGAAGTCAAGGAAGGCTGCAATTGGCGGGTACGAGCTATATTTATTCAAATTTCGT
326 GGGAGTGGTGGAAGTCAAGGAAGGCTGCAATTGGCGGGTACGAGCTATATTTATTCAAATTTCAT
** * * * *
88029954 AAATGTGGGAGATATGCAAATGTGTTGGGCCTCACATATGTACATCAACATGTATGATCGAAGAT
391 AAATGTGGGAGATACACAAATGTGTTAGGCCTCACACATGCACATCAACATGTATGATAGAAGAT
88030019 CATCGAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATGCCGAC
456 CATCGAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATGCCGAC
*
88030084 GATGATATTAACGATGAAGATGTGAATGTT-GATGGAAACATTAACGCGTCTTCGATAGGGAATC
1 GATGATATTAACGATGAAGACGTGAAT-TTCGATGGAAACATTAACGCGTCTTCGATAGGGAATC
* * * *
88030148 ATATGTGACGTATTGTGATACACAATAATCTTGGGCCACACACGTTGCTAATAGACCCTGACGCG
65 ATATGCGACGTATTGTGATACACAATAATCCTGGGCCACACACGTCGCTAATAAACCCTGACGCG
*
88030213 GCGCATGTAGCTGAGTTCCCAAAGTA-CCTTGAAATA-GTTCCTGCTCACCGGCTGGTCATAAAT
130 GCGCATGTAGCTGAGTTCCCAAAGTATCC-TGAAATACGTTCC-GCTCACCGGCTGGCCATAAAT
* * *
88030276 TTCGATCCTGAGGAGTTGTTCGTAGGCCA-AAATTCAAAAGTAAATAAGAGCGTGTATTTACTAT
193 TTCGATCCTAAGGAGTTGTTCGTAGGCCAGAAATTCAAAAGTAAAGAAGAGCGAGTATTTACTAT
*
88030340 TAAGCGGTATAGCATAAATAAATCAATGGATTACAAAGTTGCAGTGTCTAAATCGACATTATATA
258 TAAGCGGTATAGCATAAATAAATCAATGGATTACAAAGTTGCAGTGTCTAAATCAACATTATATA
* *
88030405 TTAGGGAGTGTTGGAAGTCAACGGAAGGCTGCAATTGGCGGGTACGAGCTGTATTTATTCAAATT
323 TTAGGGAGTGGTGGAAGTCAA-GGAAGGCTGCAATTGGCGGGTACGAGCTATATTTATTCAAATT
* * * *
88030470 TCATAGATGTGGGAGATACACAAATTTGTTAGGCCTCACACGTGCGCATCAACATGTATGATAGA
387 TCATAAATGTGGGAGATACACAAATGTGTTAGGCCTCACACATGCACATCAACATGTATGATAGA
88030535 AGATCATCGAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATG
452 AGATCATCGAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATG
88030599 TAGACCATTA
Statistics
Matches: 469, Mismatches: 42, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
519 120 0.26
520 347 0.74
521 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (520 bp):
GATGATATTAACGATGAAGACGTGAATTTCGATGGAAACATTAACGCGTCTTCGATAGGGAATCA
TATGCGACGTATTGTGATACACAATAATCCTGGGCCACACACGTCGCTAATAAACCCTGACGCGG
CGCATGTAGCTGAGTTCCCAAAGTATCCTGAAATACGTTCCGCTCACCGGCTGGCCATAAATTTC
GATCCTAAGGAGTTGTTCGTAGGCCAGAAATTCAAAAGTAAAGAAGAGCGAGTATTTACTATTAA
GCGGTATAGCATAAATAAATCAATGGATTACAAAGTTGCAGTGTCTAAATCAACATTATATATTA
GGGAGTGGTGGAAGTCAAGGAAGGCTGCAATTGGCGGGTACGAGCTATATTTATTCAAATTTCAT
AAATGTGGGAGATACACAAATGTGTTAGGCCTCACACATGCACATCAACATGTATGATAGAAGAT
CATCGAAAACTTGATTCTAAAACTATCTGTACGTGTATCATGCCAATGGTGAAGGACATGCCGAC
Found at i:88032271 original size:17 final size:17
Alignment explanation
Indices: 88032246--88032321 Score: 71
Period size: 18 Copynumber: 4.2 Consensus size: 17
88032236 TTGCAAAGTT
88032246 TGTTCTAATTAGATTAA
1 TGTTCTAATTAGATTAA
* *
88032263 TGTTGTAATGTATTTAATTAA
1 TGTTCTAAT-TA---GATTAA
*
88032284 TGTTCCAATTAGATTAA
1 TGTTCTAATTAGATTAA
*
88032301 TGTATTTAATTAGATTAA
1 TGT-TCTAATTAGATTAA
88032319 TGT
1 TGT
88032322 GTTTTAATGT
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
17 16 0.34
18 17 0.36
20 2 0.04
21 12 0.26
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (17 bp):
TGTTCTAATTAGATTAA
Found at i:88032745 original size:33 final size:32
Alignment explanation
Indices: 88032677--88032754 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 32
88032667 AGTGGAGTAT
* *
88032677 TGCGGTGGATACGGGCCGGAGTAGTGTTGTAC
1 TGCGGTGGATATGGGCCGGAGAAGTGTTGTAC
* *
88032709 TGCGGTGGATATGGGTCGGGAGAAGTGTTGTGC
1 TGCGGTGGATATGGG-CCGGAGAAGTGTTGTAC
*
88032742 TGCGATGGATATG
1 TGCGGTGGATATG
88032755 ACCCAAAGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 14 0.35
33 26 0.65
ACGTcount: A:0.17, C:0.12, G:0.45, T:0.27
Consensus pattern (32 bp):
TGCGGTGGATATGGGCCGGAGAAGTGTTGTAC
Found at i:88032931 original size:24 final size:24
Alignment explanation
Indices: 88032885--88032949 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
88032875 CGACCTCCAA
* *
88032885 CTGTGGCTCAGGCTCTAGCTCTGG
1 CTGTGGCTCGGGCTCTAGATCTGG
* *
88032909 CTCG-GGTTCGGGCTCTGGATCTGG
1 CT-GTGGCTCGGGCTCTAGATCTGG
88032933 CTGTGGCTCGGGCTCTA
1 CTGTGGCTCGGGCTCTA
88032950 TATTGGCCAC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 1 0.03
24 31 0.94
25 1 0.03
ACGTcount: A:0.06, C:0.28, G:0.37, T:0.29
Consensus pattern (24 bp):
CTGTGGCTCGGGCTCTAGATCTGG
Found at i:88035252 original size:147 final size:145
Alignment explanation
Indices: 88034987--88035668 Score: 918
Period size: 147 Copynumber: 4.6 Consensus size: 145
88034977 TTTTTTTCGG
* *
88034987 TGATTTTGGCCCTTTGCTTGTATTTTTCTTAATTCTCGGATTTTATTTTTTAAAATATACCATTT
1 TGATTTTGGCCCTTTGTTTGTATTTTT-TT-A-----GGATTTTATTTTTTAAAATATACTATTT
* *
88035052 TCATA-TTT-TATTTTTATATTATTTTAGTATATAATATTTCAAATGTATTATTTTAGTGTTTTT
59 TCGTATTTTATATTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTT
88035115 TATATTAATTTAGTAAAAAATCC
124 TATATTAATTTAGTAAAAAA-CC
*
88035138 TGATTTTGACCCTTTGTTTGTATTTTTTTAGGATTTT-TTTTTCTAAAATATACTATTTTCGTAT
1 TGATTTTGGCCCTTTGTTTGTATTTTTTTAGGATTTTATTTTT-TAAAATATACTATTTTCGTAT
*
88035202 TTTATATTTTTATATTATTTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTTATAT
65 TTTATATTTTTATATTA-TTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTTTATAT
88035267 TAATTTAGTAAAAAACC
129 TAATTTAGTAAAAAACC
88035284 TTGAATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTT
1 -TG-ATTTTGGCCCTTTGTTTGTATTTTTTTA-----GGATTTTATTTTTTAAAATATACTATTT
* * *
88035349 TCGTATTTTAT-TTTTTATACTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-ATTTT
59 TCGTATTTTATATTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTT
88035412 TATATTAATTTAGTAAAAAACCC
124 TATATTAATTTAGTAAAAAA-CC
* * *
88035435 TGATTTTGGCCATTTGTTTATATTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTTTCG
1 TGATTTTGGCCCTTTGTTTGTA--TTTT-TT-TAGGATTTTATTTTTTAAAATATACTATTTTCG
* *
88035500 TA-TTT-TATTTTTATATTATTTTAGTACATAATGTTTCAAGTGTATTATTTTAGTGTTTTTTTA
62 TATTTTATATTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTG-TTTTTTA
88035563 TATTAATTTAGTAAAAAACAC
126 TATTAATTTAGTAAAAAAC-C
* * *
88035584 TGATTTTGGCCCTTTATTTGTATTATTTT---ATTTTATTTTTTAAAATATACTATTTTCATATT
1 TGATTTTGGCCCTTTGTTTGTATTTTTTTAGGATTTTATTTTTTAAAATATACTATTTTCGTATT
88035646 TTAT-TTTTTATATTATTTTAGTA
66 TTATATTTTTATATTATTTTAGTA
88035669 AAAACCCGCC
Statistics
Matches: 487, Mismatches: 21, Indels: 54
0.87 0.04 0.10
Matches are distributed among these distances:
142 30 0.06
143 27 0.06
144 26 0.05
145 4 0.01
146 18 0.04
147 113 0.23
148 61 0.13
149 63 0.13
150 28 0.06
151 66 0.14
152 12 0.02
153 34 0.07
154 5 0.01
ACGTcount: A:0.27, C:0.07, G:0.08, T:0.57
Consensus pattern (145 bp):
TGATTTTGGCCCTTTGTTTGTATTTTTTTAGGATTTTATTTTTTAAAATATACTATTTTCGTATT
TTATATTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTTTATATTA
ATTTAGTAAAAAACC
Found at i:88035402 original size:298 final size:297
Alignment explanation
Indices: 88034987--88035668 Score: 1016
Period size: 298 Copynumber: 2.3 Consensus size: 297
88034977 TTTTTTTCGG
* * *
88034987 TGATTTTGGCCCTTTGCTTGTATTTTTCTTAATTCTCGGATTTTATTTTTTAAAATATACCATTT
1 TGATTTTGGCCCTTTGTTTGTATTTTT-TT-ATTCTTGGATTTTATTTTTTAAAATATACTATTT
* *
88035052 TCATATTTTA-TTTTTATATTATTTTAGTATATAATATTTCAAATGTATTATTTTAGTGTTTTTT
64 TCATATTTTATTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGT-ATTTTT
* * *
88035116 ATATTAATTTAGTAAAAAATCCTGATTTTGACCCTTTGTTTGTA-TTTT-TT-TAGGATTTT-TT
128 ATATTAATTTAGTAAAAAACCCTGATTTTGACCATTTGTTTATATTTTTATTCTAGGATTTTATT
88035177 TTTCTAAAATATACTATTTTCGTATTTTATATTTTTATATTATTTTTAGTACATAATATTTCAAA
193 TTT-TAAAATATACTATTTTCGTA-TTT-TATTTTTATATTA-TTTTAGTACATAATATTTCAAA
88035242 TGTATTATTTTAGT-ATTTTTTATATTAATTTAGTAAAAAAC-C
254 TGTATTATTTTAGTGATTTTTTATATTAATTTAGTAAAAAACAC
88035284 TTGAATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTT
1 -TG-ATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTT
* * *
88035349 TCGTATTTTATTTTTTATACTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTA
64 TCATATTTTATTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTA
* *
88035414 TATTAATTTAGTAAAAAACCCTGATTTTGGCCATTTGTTTATATTTTTTATTCTTGGATTTTATT
129 TATTAATTTAGTAAAAAACCCTGATTTTGACCATTTGTTTATA-TTTTTATTCTAGGATTTTATT
* *
88035479 TTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATGTTTCAAGTGTA
193 TTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATATTTCAAATGTA
*
88035544 TTATTTTAGTGTTTTTTTATATTAATTTAGTAAAAAACAC
258 TTATTTTAGTGATTTTTTATATTAATTTAGTAAAAAACAC
*
88035584 TGATTTTGGCCCTTTATTTGTA-----TTATT-TT--ATTTTATTTTTTAAAATATACTATTTTC
1 TGATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTTTC
88035641 ATATTTTATTTTTTATATTATTTTAGTA
66 ATATTTTATTTTTTATATTATTTTAGTA
88035669 AAAACCCGCC
Statistics
Matches: 356, Mismatches: 19, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
290 54 0.15
292 2 0.01
293 5 0.01
297 86 0.24
298 101 0.28
299 69 0.19
300 6 0.02
301 28 0.08
302 5 0.01
ACGTcount: A:0.27, C:0.07, G:0.08, T:0.57
Consensus pattern (297 bp):
TGATTTTGGCCCTTTGTTTGTATTTTTTTATTCTTGGATTTTATTTTTTAAAATATACTATTTTC
ATATTTTATTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTATA
TTAATTTAGTAAAAAACCCTGATTTTGACCATTTGTTTATATTTTTATTCTAGGATTTTATTTTT
TAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATATTTCAAATGTATTA
TTTTAGTGATTTTTTATATTAATTTAGTAAAAAACAC
Found at i:88036842 original size:5 final size:5
Alignment explanation
Indices: 88036832--88036864 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
88036822 TTTCACCCAA
88036832 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
88036865 TACAAACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:88036940 original size:11 final size:11
Alignment explanation
Indices: 88036926--88036955 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
88036916 AATAAATTTA
88036926 AAAATTAAATC
1 AAAATTAAATC
88036937 AAAATTAAATC
1 AAAATTAAATC
88036948 AAAATTAA
1 AAAATTAA
88036956 TTAACAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (11 bp):
AAAATTAAATC
Found at i:88037089 original size:39 final size:40
Alignment explanation
Indices: 88037035--88037112 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
88037025 TAAAAAATTA
*
88037035 CTTTTTTTTCTTCTTTTTC-TTT-CTTTTTCCTTCCCTCC
1 CTTTTTTTTCCTCTTTTTCTTTTCCTTTTTCCTTCCCTCC
*
88037073 CTTTTTTTCTCCTCTTTTTCTTTTCCTTTTTTCTTCCCTC
1 CTTTTTTT-TCCTCTTTTTCTTTTCCTTTTTCCTTCCCTC
88037113 ACCAGTGCCG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
38 8 0.23
39 10 0.29
40 3 0.09
41 14 0.40
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (40 bp):
CTTTTTTTTCCTCTTTTTCTTTTCCTTTTTCCTTCCCTCC
Found at i:88038080 original size:30 final size:30
Alignment explanation
Indices: 88038022--88038080 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
88038012 GTTGAAATTT
* * *
88038022 TTTTAAATTTGATTATTTATGTTGTTTTTC
1 TTTTAAATTTGATTATATATATTATTTTTC
88038052 TTTTAAATTT-ATTGATATATATTATTTTT
1 TTTTAAATTTGATT-ATATATATTATTTTT
88038081 GGAGAGAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.66
Consensus pattern (30 bp):
TTTTAAATTTGATTATATATATTATTTTTC
Found at i:88040065 original size:53 final size:54
Alignment explanation
Indices: 88039984--88040134 Score: 193
Period size: 53 Copynumber: 2.8 Consensus size: 54
88039974 TTTACACGGT
*
88039984 TCACATATCATACCGA-AGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATA-CCATAGCCCAGACTATGGTCTTATACGGAATCACATTA
*
88040039 TCACATTATACCGATACCATAGCCCAG-CTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATACCATAGCCCAGACTATGGTCTTATACGGAATCACATTA
** * *
88040092 TCACATTGCACCGATGCCATAGCCCA-ACTATGGTCTTAAACGG
1 TCACATTATACCGATACCATAGCCCAGACTATGGTCTTATACGG
88040135 GCACACTTAT
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
52 1 0.01
53 78 0.90
54 2 0.02
55 6 0.07
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (54 bp):
TCACATTATACCGATACCATAGCCCAGACTATGGTCTTATACGGAATCACATTA
Found at i:88042161 original size:22 final size:24
Alignment explanation
Indices: 88042113--88042158 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
88042103 GTAAGGCCCT
*
88042113 TTCTCTTGCTGCTGTTCAATTTCCG
1 TTCTCTTGCTGCTGGT-AATTTCCG
88042138 TTCTCTTGCTGCTGGT-ATTTC
1 TTCTCTTGCTGCTGGTAATTTC
88042159 GTTTCCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
25 15 0.75
ACGTcount: A:0.07, C:0.26, G:0.17, T:0.50
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTCCG
Found at i:88042204 original size:2 final size:2
Alignment explanation
Indices: 88042197--88042225 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
88042187 TCTCATGCAA
88042197 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
88042226 TTCGCAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:88044643 original size:46 final size:46
Alignment explanation
Indices: 88044590--88044762 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
88044580 TGGTTGAGCA
88044590 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
88044636 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
88044681 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
88044729 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
88044763 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:88044746 original size:93 final size:93
Alignment explanation
Indices: 88044587--88044757 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
88044577 GGATGGTTGA
* * *
88044587 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
88044652 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
88044680 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
88044745 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
88044758 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:88047008 original size:22 final size:20
Alignment explanation
Indices: 88046968--88047016 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
88046958 CAATTTAAAA
88046968 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
88046988 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
88047008 TGTAAAAAT
1 TATAAAAAT
88047017 AACTTTTACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:88053082 original size:109 final size:109
Alignment explanation
Indices: 88052891--88053111 Score: 442
Period size: 109 Copynumber: 2.0 Consensus size: 109
88052881 AGAAGGTAAT
88052891 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
1 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
88052956 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
66 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
88053000 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
1 CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
88053065 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
66 AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
88053109 CTC
1 CTC
88053112 AGACTCGGAT
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 112 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (109 bp):
CTCTATGAAAATTTTCCAAGGAAAAACTTATATGGATTGAAGTTGGTTGACTTTGCAAAAAAATA
AAATGATAAGCAATACTTGGTAATATGCAATACATCCTATGTTA
Found at i:88053889 original size:117 final size:117
Alignment explanation
Indices: 88053650--88053881 Score: 371
Period size: 117 Copynumber: 2.0 Consensus size: 117
88053640 TTTACTGAAT
* *
88053650 TATTATCATTCATTTTGAGTATGCAGAAAGCTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
1 TATTATCAGTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
88053715 TCAAGTGATCCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
66 TCAAGTGA-CCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
* *
88053768 -ATTATCAGTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTTTTACTTTTGC-AAT
1 TATTATCAGTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
* * *
88053831 TCAGGTG-CTGTTTATTAAAGAATAAACTAATTCCAACCCCAATTAATTATA
66 TCAAGTGACCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
88053882 ACTATTATGA
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
114 42 0.39
116 9 0.08
117 56 0.52
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (117 bp):
TATTATCAGTCATTTTGAGTATGCAGAAAACTGTATGATACAAAAGCACTGTAACTTTTGCAAAT
TCAAGTGACCGTTTATTAAAGAATAAACTAATTCCAACCCAAATTAATTATA
Found at i:88056572 original size:27 final size:26
Alignment explanation
Indices: 88056499--88056572 Score: 60
Period size: 27 Copynumber: 2.7 Consensus size: 26
88056489 TACGAATAAT
* *
88056499 TTTAAAGTAAATAAT-ATATATATACA
1 TTTAAAGTAAA-AATAATATATAAAAA
* *
88056525 TGTAAAAGTATGAAAAAAATATATAAAAA
1 T-TTAAAGTA--AAAATAATATATAAAAA
88056554 TTTAAAGTAAACAATAATA
1 TTTAAAGTAAA-AATAATA
88056573 AAAAATATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
26 3 0.08
27 13 0.35
28 9 0.24
29 12 0.32
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (26 bp):
TTTAAAGTAAAAATAATATATAAAAA
Found at i:88060554 original size:21 final size:21
Alignment explanation
Indices: 88060530--88060619 Score: 130
Period size: 21 Copynumber: 4.3 Consensus size: 21
88060520 CCATCACTGT
88060530 TGCCTCTGCCTCCCTCGCTAG-
1 TGCCTCTGCCTCCCTCGCT-GC
88060551 TGCCTCTGCCTCCCTCGCTGC
1 TGCCTCTGCCTCCCTCGCTGC
*
88060572 TGCCGCTGCCTCCCTCGCTGC
1 TGCCTCTGCCTCCCTCGCTGC
*
88060593 TG-CTGCTGCCTCCCTCTCTGC
1 TGCCT-CTGCCTCCCTCGCTGC
88060614 TGCCTC
1 TGCCTC
88060620 CGCTCTAAGT
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.03
21 59 0.94
22 2 0.03
ACGTcount: A:0.01, C:0.50, G:0.20, T:0.29
Consensus pattern (21 bp):
TGCCTCTGCCTCCCTCGCTGC
Found at i:88061060 original size:13 final size:14
Alignment explanation
Indices: 88061033--88061061 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
88061023 GGATGAATCG
88061033 AATTAAACAATTAT
1 AATTAAACAATTAT
88061047 AATTAAAC-ATTAT
1 AATTAAACAATTAT
88061060 AA
1 AA
88061062 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:88061250 original size:17 final size:16
Alignment explanation
Indices: 88061228--88061266 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
88061218 AAAATATTAT
88061228 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
88061245 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
88061261 TTAATA
1 TTAATA
88061267 AATTCATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:88061471 original size:9 final size:9
Alignment explanation
Indices: 88061450--88061565 Score: 57
Period size: 9 Copynumber: 13.1 Consensus size: 9
88061440 TATGTATTAC
*
88061450 GTAAGTTAA
1 GTAAGTTAT
88061459 GTAAGCTT-T
1 GTAAG-TTAT
88061468 GTAAGTTAT
1 GTAAGTTAT
88061477 GTAAGTTAT
1 GTAAGTTAT
* *
88061486 GTTA-TGAT
1 GTAAGTTAT
* *
88061494 ATACATTTAT
1 GTA-AGTTAT
88061504 GTAAAG-TAT
1 GT-AAGTTAT
88061513 GTAAGTTAT
1 GTAAGTTAT
* *
88061522 GATATGATAT
1 G-TAAGTTAT
*
88061532 AT-A-TTGAT
1 GTAAGTT-AT
88061540 GT-A-TTAT
1 GTAAGTTAT
*
88061547 GTAAGTTGT
1 GTAAGTTAT
88061556 GTAAGTTAT
1 GTAAGTTAT
88061565 G
1 G
88061566 ATATGATATA
Statistics
Matches: 81, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
7 5 0.06
8 16 0.20
9 46 0.57
10 13 0.16
11 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:88061514 original size:36 final size:36
Alignment explanation
Indices: 88061474--88061542 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
88061464 CTTTGTAAGT
* *
88061474 TATGTAAGTTATGTTATGATATACATTTATGTAAAG
1 TATGTAAGTTATGATATGATATACATTGATGTAAAG
*
88061510 TATGTAAGTTATGATATGATATATATTGATGTA
1 TATGTAAGTTATGATATGATATACATTGATGTA
88061543 TTATGTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.45
Consensus pattern (36 bp):
TATGTAAGTTATGATATGATATACATTGATGTAAAG
Found at i:88061559 original size:43 final size:43
Alignment explanation
Indices: 88061500--88061608 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
88061490 TGATATACAT
* *
88061500 TTATGTAAAGTATGTAAGTTATGATATGATATATATTGATGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTGATATA
* * *
88061543 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATATA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTGATATA
* *
88061586 TTTTGTAAGGTATATAAGTTATG
1 TTATGTAAGGTATGTAAGTTATG
88061609 TAAGTTATTA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (43 bp):
TTATGTAAGGTATGTAAGTTATGATATGATATATATTGATATA
Found at i:88061621 original size:43 final size:44
Alignment explanation
Indices: 88061467--88061632 Score: 144
Period size: 43 Copynumber: 3.8 Consensus size: 44
88061457 AAGTAAGCTT
* * * *
88061467 TGTAAGTTATG-TAAGTTATGTTATGATATACATTTATGTAAAGTA
1 TGTAAGTTATGATAAGATAT-ATATGATATATATTT-TGTAAGGTA
* * * * *
88061512 TGTAAGTTATGATATGATATATAT--TGATGTATTATGTAAGTTG
1 TGTAAGTTATGATAAGATATATATGAT-ATATATTTTGTAAGGTA
* *
88061555 TGTAAGTTATGATATGATATATAT-TTATATATTTTGTAAGGTA
1 TGTAAGTTATGATAAGATATATATGATATATATTTTGTAAGGTA
* *
88061598 TATAAGTTATG-TAAGTTATTATATGATATATATTT
1 TGTAAGTTATGATAAGATA-TATATGATATATATTT
88061633 ATGATATATA
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 5 0.05
43 59 0.60
44 15 0.15
45 14 0.14
46 6 0.06
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.48
Consensus pattern (44 bp):
TGTAAGTTATGATAAGATATATATGATATATATTTTGTAAGGTA
Found at i:88061637 original size:13 final size:13
Alignment explanation
Indices: 88061614--88061647 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
88061604 TTATGTAAGT
88061614 TATTATATGATATA
1 TATT-TATGATATA
88061628 TATTTATGATATA
1 TATTTATGATATA
88061641 TATTTAT
1 TATTTAT
88061648 TTATTATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
TATTTATGATATA
Found at i:88061648 original size:17 final size:18
Alignment explanation
Indices: 88061613--88061651 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
88061603 GTTATGTAAG
*
88061613 TTATTATATGATATATAT
1 TTATGATATGATATATAT
*
88061631 TTATGATAT-ATATTTAT
1 TTATGATATGATATATAT
88061648 TTAT
1 TTAT
88061652 TATGTAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (18 bp):
TTATGATATGATATATAT
Found at i:88061755 original size:11 final size:11
Alignment explanation
Indices: 88061735--88061766 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
88061725 ATTATTTTAA
*
88061735 TTAAATAAATT
1 TTAAAAAAATT
88061746 TTAAAAAAATT
1 TTAAAAAAATT
88061757 TTAAAAAAAT
1 TTAAAAAAAT
88061767 CACATGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TTAAAAAAATT
Found at i:88062777 original size:19 final size:19
Alignment explanation
Indices: 88062753--88062792 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
88062743 TACAAAGCTC
88062753 GTTGGTATATCAAATTATA
1 GTTGGTATATCAAATTATA
88062772 GTTGGTATATCAAATTATA
1 GTTGGTATATCAAATTATA
88062791 GT
1 GT
88062793 CAAATCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.42
Consensus pattern (19 bp):
GTTGGTATATCAAATTATA
Found at i:88065827 original size:14 final size:14
Alignment explanation
Indices: 88065792--88065827 Score: 65
Period size: 13 Copynumber: 2.6 Consensus size: 14
88065782 TATTATCTCT
88065792 TAAATAATTTAATC
1 TAAATAATTTAATC
88065806 TAAA-AATTTAATC
1 TAAATAATTTAATC
88065819 TAAATAATT
1 TAAATAATT
88065828 CCATTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:88066069 original size:36 final size:36
Alignment explanation
Indices: 88066029--88066098 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
88066019 ACATGTAACC
88066029 ATTAACCATATAA-ACATAAACCCTAAACCATAATTT
1 ATTAACCATA-AACACATAAACCCTAAACCATAATTT
* * * *
88066065 ATTAACCCTAAACCCATAACCCCTAATCCATAAT
1 ATTAACCATAAACACATAAACCCTAAACCATAAT
88066099 CCATAAACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 2 0.07
36 27 0.93
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (36 bp):
ATTAACCATAAACACATAAACCCTAAACCATAATTT
Found at i:88066862 original size:39 final size:39
Alignment explanation
Indices: 88066759--88066862 Score: 97
Period size: 39 Copynumber: 2.6 Consensus size: 39
88066749 AAAATTTGCA
*
88066759 GCGTTTTTTAACAAACGCCGCT-ATATGCATACCTTTAGCG
1 GCGTTTTTT-ACAAACGCCGCTAATATGCATA-CTATAGCG
* * * *
88066799 GCGCTTCTTTAAAAATGCCACTAATACTG-AT-CTATAGCG
1 GCG-TTTTTTACAAACGCCGCTAATA-TGCATACTATAGCG
88066838 GCGTTTTTGTACAAACGCCGCTAAT
1 GCGTTTTT-TACAAACGCCGCTAAT
88066863 GCCATTGAAG
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
38 4 0.08
39 23 0.45
40 12 0.24
41 10 0.20
42 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (39 bp):
GCGTTTTTTACAAACGCCGCTAATATGCATACTATAGCG
Found at i:88074675 original size:13 final size:13
Alignment explanation
Indices: 88074655--88074687 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
88074645 TGTATATGGT
88074655 AAAAATTTATT-A
1 AAAAATTTATTCA
88074667 AACAAATTTATTCA
1 AA-AAATTTATTCA
88074681 AAAAATT
1 AAAAATT
88074688 ACAAGTAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 14 0.74
14 3 0.16
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAAATTTATTCA
Found at i:88075867 original size:49 final size:49
Alignment explanation
Indices: 88075809--88075907 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
88075799 ATGTGAAGTT
88075809 AGGAAAATGATTGAAATAGTGAATAGTATTTTATAATAAATACTAAATA
1 AGGAAAATGATTGAAATAGTGAATAGTATTTTATAATAAATACTAAATA
88075858 AGGAAAATGATTGAAATAGTGAATAGTATTTTATAATAAATACTAAATA
1 AGGAAAATGATTGAAATAGTGAATAGTATTTTATAATAAATACTAAATA
88075907 A
1 A
88075908 TTTAGAAGTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.32
Consensus pattern (49 bp):
AGGAAAATGATTGAAATAGTGAATAGTATTTTATAATAAATACTAAATA
Found at i:88076959 original size:52 final size:53
Alignment explanation
Indices: 88076808--88076963 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 53
88076798 GGACCATGGC
* * *
88076808 AACAAGTGATAAGCGATATCTGTATAAGACCATAGCTAGGCTATGGCATCGGAA
1 AACAAGTGATAAGTGAT-TCTGTATAAGACCATAGCTGGGCTATGGCATCAGAA
* *
88076862 AACAAGTGATAAGTGATTCCCGTATAAGACCATAGCTGGGCTATGGCATCAGAG
1 AACAAGTGATAAGTGATT-CTGTATAAGACCATAGCTGGGCTATGGCATCAGAA
* * * * *
88076916 AA-AAGTGATAAGTGCTTCTGTGTAAGACCATATCCGGGATATGGCATC
1 AACAAGTGATAAGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATC
88076964 GATATGATAT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 26 0.29
53 15 0.17
54 49 0.54
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (53 bp):
AACAAGTGATAAGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCAGAA
Found at i:88087758 original size:20 final size:18
Alignment explanation
Indices: 88087733--88087769 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
88087723 ATTGCTAAGT
88087733 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
88087753 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
88087770 TATGAGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:88097590 original size:17 final size:17
Alignment explanation
Indices: 88097568--88097605 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
88097558 ACTAAAGTTA
88097568 TCTTACATTTTCATCAT
1 TCTTACATTTTCATCAT
88097585 TCTTACATTTTCATCAT
1 TCTTACATTTTCATCAT
88097602 TCTT
1 TCTT
88097606 TCTTCCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (17 bp):
TCTTACATTTTCATCAT
Found at i:88098491 original size:37 final size:37
Alignment explanation
Indices: 88098441--88098511 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
88098431 CTTAAATTAC
88098441 AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
1 AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
*
88098478 AAGTATATGGTTATTTGATATGTGTACGAAAATG
1 AAGTATATGGTTATTTGATATGTGAACGAAAATG
88098512 TTCAAAAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.37
Consensus pattern (37 bp):
AAGTATATGGTTATTTGATATGTGAACGAAAATGAAT
Found at i:88098905 original size:17 final size:17
Alignment explanation
Indices: 88098875--88098907 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
88098865 TTAAATAATT
88098875 ATTTAGTTTATATTTTC
1 ATTTAGTTTATATTTTC
88098892 ATTTA-TTTATTATTTT
1 ATTTAGTTTA-TATTTT
88098908 TTGACTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
ATTTAGTTTATATTTTC
Found at i:88108796 original size:3 final size:3
Alignment explanation
Indices: 88108788--88108816 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
88108778 TTTGCTTGAG
88108788 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
88108817 ATATGTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:88109728 original size:15 final size:15
Alignment explanation
Indices: 88109708--88109738 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
88109698 ACTAATTATC
88109708 TTGTTTCAAATATTA
1 TTGTTTCAAATATTA
88109723 TTGTTTCAAATATTA
1 TTGTTTCAAATATTA
88109738 T
1 T
88109739 CTTAAGTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (15 bp):
TTGTTTCAAATATTA
Found at i:88110446 original size:17 final size:18
Alignment explanation
Indices: 88110424--88110471 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
88110414 CAAAATTATT
*
88110424 TTTTAAAATATT-TTTAA
1 TTTTAAAATATTAATTAA
*
88110441 TTTTAAAAAATTAATTAA
1 TTTTAAAATATTAATTAA
*
88110459 TTATTAATATATT
1 TT-TTAAAATATT
88110472 GTGTCAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 6 0.24
19 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAAAATATTAATTAA
Found at i:88110458 original size:18 final size:17
Alignment explanation
Indices: 88110415--88110465 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
88110405 CAACTATAAC
88110415 AAAATTATT--TTTTAA
1 AAAATTATTAATTTTAA
* *
88110430 AATATTTTTAATTTTAA
1 AAAATTATTAATTTTAA
88110447 AAAATTAATTAATTATTAA
1 AAAATT-ATTAATT-TTAA
88110466 TATATTGTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 7 0.25
17 11 0.39
18 6 0.21
19 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAAATTATTAATTTTAA
Found at i:88111997 original size:18 final size:18
Alignment explanation
Indices: 88111974--88112016 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
88111964 GAATAATTAT
*
88111974 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAA
* *
88111992 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAA
88112010 TTATTCA
1 TTATTCA
88112017 ATAATAACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:88112016 original size:36 final size:36
Alignment explanation
Indices: 88111974--88112244 Score: 145
Period size: 36 Copynumber: 7.3 Consensus size: 36
88111964 GAATAATTAT
*
88111974 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * ** * * *
88112010 TTATTCAATAATAACCAGTTATTCAATATCGATCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
*
88112046 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAGTCAGTTATTCAGTAACAATCA-A
* * * *
88112090 -TATTCAGTAACTATTAAGTTATTCAGTAGCAGTC-A
1 TTATTCAGTAAC-AGTCAGTTATTCAGTAACAATCAA
* * * **
88112125 TTCATTCAGTGACAATCAATTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * * *
88112162 TTATTCAGTAATATTCAGTAATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATC-AA
* * * * * * *
88112199 -TATCCAGTAACAGTAAATTATCCGGTAATAGTCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
88112234 TTATTCAGTAA
1 TTATTCAGTAA
88112245 TAATAAGTTA
Statistics
Matches: 172, Mismatches: 47, Indels: 32
0.69 0.19 0.13
Matches are distributed among these distances:
35 10 0.06
36 117 0.68
37 19 0.11
42 2 0.01
43 6 0.03
44 18 0.10
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
Found at i:88112186 original size:72 final size:71
Alignment explanation
Indices: 88112055--88112252 Score: 229
Period size: 72 Copynumber: 2.7 Consensus size: 71
88112045 ATTGATCGGT
* * *
88112055 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAGTAG
1 TATCCAGTAACAGTCAATTATTCAGTAATATCA-ATTATTCAGTAA-TATTAAGTAATTCAGTAA
*
88112119 CAGTC-AT
64 CAGTCTAA
* * * *
88112126 TCATTCAGTGACAATCAATTATTCAGTAATGATCAATTATTCAGTAATATTCAGTAATTCAGTAA
1 T-ATCCAGTAACAGTCAATTATTCAGTAAT-ATCAATTATTCAGTAATATTAAGTAATTCAGTAA
88112191 CAGTCTAA
64 CAGTCTAA
* * * *
88112199 TATCCAGTAACAGTAAATTATCCGGTAATAGTCAATTATTCAGTAATAATAAGT
1 TATCCAGTAACAGTCAATTATTCAGTAATA-TCAATTATTCAGTAATATTAAGT
88112253 TATTTTATTC
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
71 2 0.02
72 88 0.83
73 16 0.15
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (71 bp):
TATCCAGTAACAGTCAATTATTCAGTAATATCAATTATTCAGTAATATTAAGTAATTCAGTAACA
GTCTAA
Found at i:88112246 original size:18 final size:18
Alignment explanation
Indices: 88112054--88112244 Score: 142
Period size: 18 Copynumber: 10.6 Consensus size: 18
88112044 AATTGATCGG
*
88112054 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
*
88112072 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
*
88112090 -TATTCAGTAACTA-TTAA
1 TTATTCAGTAAC-AGTCAA
*
88112107 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* *
88112125 TTCATTCAGTGACAATCAA
1 TT-ATTCAGTAACAGTCAA
*
88112144 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
88112162 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
*
88112180 TAATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
* *
88112199 -TATCCAGTAACAGTAAA
1 TTATTCAGTAACAGTCAA
* * *
88112216 TTATCCGGTAATAGTCAA
1 TTATTCAGTAACAGTCAA
88112234 TTATTCAGTAA
1 TTATTCAGTAA
88112245 TAATAAGTTA
Statistics
Matches: 135, Mismatches: 26, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
17 19 0.14
18 100 0.74
19 16 0.12
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:88112480 original size:45 final size:45
Alignment explanation
Indices: 88112427--88112626 Score: 260
Period size: 45 Copynumber: 4.5 Consensus size: 45
88112417 AACAAATCTG
* * * *
88112427 GAAT-AGTAACAGTAACAATAACAGTATTCAACACACAAAGTGCT
1 GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCC
* *
88112471 GAATCAGTAACGGTAACAGTAACAATATTCGACACACACAGTGCC
1 GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCC
* *
88112516 GAATC-GATAACGGTAACAGTAACAATACTCGACACACAAAGTGCC
1 GAATCAG-TAACAGTAACAGTAACAATATTCGACACACAAAGTGCC
* * *
88112561 GAATCGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTACC
1 GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCC
* *
88112606 GAATCGGTAACAGTAGCAGTA
1 GAATCAGTAACAGTAACAGTA
88112627 GCGTTAACAA
Statistics
Matches: 141, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
44 5 0.04
45 135 0.96
46 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.18
Consensus pattern (45 bp):
GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCC
Found at i:88113053 original size:5 final size:5
Alignment explanation
Indices: 88113035--88113076 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
88113025 AATTAATCAT
* *
88113035 AATTC CATTC AATTT AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
88113077 CTTTTCCACT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTC
Found at i:88114395 original size:17 final size:16
Alignment explanation
Indices: 88114371--88114404 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
88114361 AATTTTCCCT
88114371 TTTCTCCCTTTCTTTC
1 TTTCTCCCTTTCTTTC
88114387 TTTCTTCCCTTTCTTTC
1 TTTC-TCCCTTTCTTTC
88114404 T
1 T
88114405 CGCCTGTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCTCCCTTTCTTTC
Found at i:88117441 original size:30 final size:32
Alignment explanation
Indices: 88117407--88117476 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 32
88117397 TGGCCCAAGA
* *
88117407 GTAAATATTCAAAA-TTTGAAGGATTAA-AGT
1 GTAAATATTCAAAATTTTAAAGGACTAATAGT
*
88117437 GTAAATA-TGAAAATTTTAAAGGACTAATAGT
1 GTAAATATTCAAAATTTTAAAGGACTAATAGT
*
88117468 GCAAATATT
1 GTAAATATT
88117477 TTAAGGACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 5 0.15
30 18 0.55
31 9 0.27
32 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33
Consensus pattern (32 bp):
GTAAATATTCAAAATTTTAAAGGACTAATAGT
Found at i:88117723 original size:8 final size:8
Alignment explanation
Indices: 88117712--88117736 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
88117702 TTTAATAAGA
88117712 TATTTTAT
1 TATTTTAT
88117720 TATTTTAT
1 TATTTTAT
88117728 TATTTTAT
1 TATTTTAT
88117736 T
1 T
88117737 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:88119018 original size:43 final size:43
Alignment explanation
Indices: 88118970--88119142 Score: 205
Period size: 43 Copynumber: 4.0 Consensus size: 43
88118960 AGCTCGTACA
* *
88118970 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
*
88119013 ATGCC-ACTGTCCCAG--GTAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACGT--GGTCTTACACGTAATCAAATATCG
*
88119055 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AAT-CAAATATCG
*
88119099 ATGCCAACGTCCCAGACGTGGTCTTACACG-ATATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTA-ATCAAATATCG
88119142 A
1 A
88119143 AAATCCTATG
Statistics
Matches: 112, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
41 2 0.02
42 30 0.27
43 43 0.38
44 37 0.33
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:88119111 original size:44 final size:43
Alignment explanation
Indices: 88118970--88119128 Score: 195
Period size: 44 Copynumber: 3.7 Consensus size: 43
88118960 AGCTCGTACA
* * *
88118970 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCCAA-ATCG
88119013 ATGCC-ACTGTCCCAG--GTAAGGTCTTACACG-AAAT-CAAATACG
1 ATGCCAAC-GTCCCAGACGT--GGTCTTACACGTAAATCCAAAT-CG
88119055 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAT-CCAAATCG
88119099 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
88119129 ATATCACATA
Statistics
Matches: 102, Mismatches: 3, Indels: 21
0.81 0.02 0.17
Matches are distributed among these distances:
41 4 0.04
42 29 0.28
43 30 0.29
44 34 0.33
45 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCCAAATCG
Found at i:88124101 original size:15 final size:15
Alignment explanation
Indices: 88124083--88124133 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
88124073 CCGTTGTTGG
88124083 TGTGGTAGGAGTCCC
1 TGTGGTAGGAGTCCC
* *
88124098 TGTGGTTGGTGT---
1 TGTGGTAGGAGTCCC
88124110 TGTGGTAGGAGTCCC
1 TGTGGTAGGAGTCCC
88124125 TGTGGTAGG
1 TGTGGTAGG
88124134 TGTTGTTGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
12 10 0.34
15 19 0.66
ACGTcount: A:0.10, C:0.12, G:0.45, T:0.33
Consensus pattern (15 bp):
TGTGGTAGGAGTCCC
Found at i:88124113 original size:27 final size:27
Alignment explanation
Indices: 88124083--88124163 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
88124073 CCGTTGTTGG
*
88124083 TGTGGTAGGAGTCCCTGTGGTTGGTGT
1 TGTGGTAGGAGTCCCTGTGGTAGGTGT
88124110 TGTGGTAGGAGTCCCTGTGGTAGGTGT
1 TGTGGTAGGAGTCCCTGTGGTAGGTGT
* *
88124137 TGT--T-GGAGTCCCTGTAGTAGGAGT
1 TGTGGTAGGAGTCCCTGTGGTAGGTGT
88124161 TGT
1 TGT
88124164 CGGAGTCCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
24 21 0.41
25 1 0.02
27 29 0.57
ACGTcount: A:0.11, C:0.11, G:0.42, T:0.36
Consensus pattern (27 bp):
TGTGGTAGGAGTCCCTGTGGTAGGTGT
Found at i:88124210 original size:24 final size:24
Alignment explanation
Indices: 88124059--88124211 Score: 128
Period size: 24 Copynumber: 6.2 Consensus size: 24
88124049 TGCTTGTCCC
* * * *
88124059 TGTTGTCGGTGTCCCCGTTGTTGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
* * *
88124083 TGTGGTAGGAGTCCCTGTGGTTGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
*
88124107 TGTTGTGGTAGGAGTCCCTGTGGTAGG
1 TG-T-T-GTCGGAGTCCCTGTGGTAGG
* *
88124134 TGTTGTTGGAGTCCCTGTAGTAGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
* ** *
88124158 AGTTGTCGGAGTCCCTGTACTCGG
1 TGTTGTCGGAGTCCCTGTGGTAGG
*
88124182 AGTTGTCGGAGTCCCTGTGG-ATGG
1 TGTTGTCGGAGTCCCTGTGGTA-GG
88124206 TGTTGT
1 TGTTGT
88124212 GCTTGTGCCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
24 84 0.78
25 2 0.02
26 1 0.01
27 21 0.19
ACGTcount: A:0.09, C:0.16, G:0.40, T:0.35
Consensus pattern (24 bp):
TGTTGTCGGAGTCCCTGTGGTAGG
Found at i:88126337 original size:23 final size:20
Alignment explanation
Indices: 88126275--88126340 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 20
88126265 AACACAATAT
88126275 AAATATATTTGTGATAAAAA
1 AAATATATTTGTGATAAAAA
* * *
88126295 AATTATAGTAGTGTATTAAATTAA
1 AAATATATTTGTG-A-TAAA--AA
88126319 ATAATATATTTGTGATAAAAA
1 A-AATATATTTGTGATAAAAA
88126340 A
1 A
88126341 TTATAGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
20 10 0.29
21 4 0.11
22 4 0.11
23 4 0.11
24 4 0.11
25 9 0.26
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.38
Consensus pattern (20 bp):
AAATATATTTGTGATAAAAA
Found at i:88126601 original size:16 final size:18
Alignment explanation
Indices: 88126579--88126620 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
88126569 TTTATAATTG
*
88126579 TAATATATAT-TTTTTAA
1 TAATATATATATTTTCAA
*
88126596 -AATATAAATATTTTCAA
1 TAATATATATATTTTCAA
88126613 TAATATAT
1 TAATATAT
88126621 TAAGAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 8 0.40
17 6 0.30
18 6 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATATATATATTTTCAA
Found at i:88128537 original size:30 final size:30
Alignment explanation
Indices: 88128489--88128547 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
88128479 AACTTTTTAT
* *
88128489 TTTCCCCCTAAATTTTTAC-TCCCTCCCAC
1 TTTCCCCCAAAACTTTTACTTCCCTCCCAC
*
88128518 TTTCCCTCCAAAACTTTTACTTCCTTCCCA
1 TTTCCC-CCAAAACTTTTACTTCCCTCCCA
88128548 TCCCAGCCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 6 0.24
30 11 0.44
31 8 0.32
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.39
Consensus pattern (30 bp):
TTTCCCCCAAAACTTTTACTTCCCTCCCAC
Done.