Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 278 of 320
Found at i:89646454 original size:26 final size:24
Alignment explanation
Indices: 89646425--89646521 Score: 86
Period size: 26 Copynumber: 3.8 Consensus size: 24
89646415 TCATATATTA
* *
89646425 TTAAGTTGTGTTATGTATTATTTGTT
1 TTAA-TTGTTTTATATATTATTT-TT
*
89646451 TTAAATTGTTTTGTATATTATTCTTT
1 TT-AATTGTTTTATATATTATT-TTT
*
89646477 TTAATTGTTTTACATATTATTTATCT
1 TTAATTGTTTTATATATTATTT-T-T
*
89646503 TAAATTGTTTTATACTATT
1 TTAATTGTTTTATA-TATT
89646522 TACTTCAAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.02
25 18 0.31
26 33 0.56
27 7 0.12
ACGTcount: A:0.25, C:0.04, G:0.09, T:0.62
Consensus pattern (24 bp):
TTAATTGTTTTATATATTATTTTT
Found at i:89646483 original size:25 final size:26
Alignment explanation
Indices: 89646440--89646514 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
89646430 TTGTGTTATG
**
89646440 TATTATTTGTTTTAAATTGTTTTGTA
1 TATTATTTGTTTTAAATTGTTTTACA
89646466 TATTATTCT-TTTT-AATTGTTTTACA
1 TATTATT-TGTTTTAAATTGTTTTACA
* *
89646491 TATTATTTATCTTAAATTGTTTTA
1 TATTATTTGTTTTAAATTGTTTTA
89646515 TACTATTTAC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
24 1 0.02
25 20 0.47
26 21 0.49
27 1 0.02
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (26 bp):
TATTATTTGTTTTAAATTGTTTTACA
Found at i:89648229 original size:30 final size:30
Alignment explanation
Indices: 89648195--89648257 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
89648185 ACTTAACAAG
89648195 CAAATG-CTTCTAAAATAATAA-AAAATTTAA
1 CAAATGCCTT-TAAAATAATAAGAAAA-TTAA
89648225 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAGAAAATTAA
89648255 CAA
1 CAA
89648258 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAGAAAATTAA
Found at i:89650489 original size:13 final size:13
Alignment explanation
Indices: 89650471--89650527 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
89650461 TATTTACAAT
*
89650471 AAATAAATAAGCC
1 AAATAAATAAACC
89650484 AAATAAATAAACC
1 AAATAAATAAACC
* *
89650497 AAATAGAT-TA--
1 AAATAAATAAACC
89650507 AAATAAATAAACC
1 AAATAAATAAACC
89650520 AAAATAAA
1 -AAATAAA
89650528 AAGCCCAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 7 0.20
11 1 0.03
12 1 0.03
13 19 0.54
14 7 0.20
ACGTcount: A:0.68, C:0.11, G:0.04, T:0.18
Consensus pattern (13 bp):
AAATAAATAAACC
Found at i:89659859 original size:36 final size:36
Alignment explanation
Indices: 89659819--89659890 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
89659809 TAAAAAATGT
89659819 CAATTTTGGATTAAATTGTGAAATGTGAAAATTTAG
1 CAATTTTGGATTAAATTGTGAAATGTGAAAATTTAG
*
89659855 CAATTTTGGATTAAATTGTGAAATGTGGAAATTTAG
1 CAATTTTGGATTAAATTGTGAAATGTGAAAATTTAG
89659891 TGGTTAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.39
Consensus pattern (36 bp):
CAATTTTGGATTAAATTGTGAAATGTGAAAATTTAG
Found at i:89661117 original size:43 final size:43
Alignment explanation
Indices: 89661038--89661193 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
89661028 TTCGGGCCTC
* * * * *
89661038 GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTATCGGGTTTCG
1 GGCCTAGCAGGCTATAATGCCGGTG-A-AATAATATCGGGATTCG
*
89661082 GGCCTAGCAGGCTATAATGCCGGTGAGATAATATCGGGATTCG
1 GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGATTCG
* * * * *
89661125 GGCCTAGCAGGCTATAATACGGGTGAAATGATATCGGGCTTCA
1 GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGATTCG
* * *
89661168 AGCTTAGCAGGCGA-AATGCCGGTGAA
1 GGCCTAGCAGGCTATAATGCCGGTGAA
89661194 TGAGTTCAGA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 10 0.11
43 62 0.66
44 16 0.17
45 6 0.06
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (43 bp):
GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGATTCG
Found at i:89667003 original size:52 final size:49
Alignment explanation
Indices: 89666941--89667101 Score: 152
Period size: 46 Copynumber: 3.3 Consensus size: 49
89666931 TGTGATTTCC
*
89666941 GTATAAGACCATAGCTGGGCTATGGCTTCGAAGAAATGTGATATGTGCTACT
1 GTATAAGACCATAGCTGGGCTATGGCATCG-AG--ATGTGATATGTGCTACT
* * * *
89666993 GTATAAGACCATATCTGGGATATGGCATC-AG-TGTGATACGTGAT-CT
1 GTATAAGACCATAGCTGGGCTATGGCATCGAGATGTGATATGTGCTACT
* * *
89667039 GTGTAAGACCATGGCTGGGCTATGGCCTCG-GTATGTGATATGTGACTA-T
1 GTATAAGACCATAGCTGGGCTATGGCATCGAG-ATGTGATATGTG-CTACT
**
89667088 GTGCAAGACCATAG
1 GTATAAGACCATAG
89667102 TTTTACTATG
Statistics
Matches: 90, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
46 27 0.30
47 11 0.12
48 10 0.11
49 14 0.16
50 2 0.02
52 26 0.29
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (49 bp):
GTATAAGACCATAGCTGGGCTATGGCATCGAGATGTGATATGTGCTACT
Found at i:89683506 original size:2 final size:2
Alignment explanation
Indices: 89683499--89683525 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
89683489 TTTTGAGCTT
89683499 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
89683526 GTGATCAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:89686201 original size:27 final size:27
Alignment explanation
Indices: 89686163--89686239 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
89686153 CTACTAAGCC
*
89686163 GAATGCTTATCTTTTCCAAAATAGGCT
1 GAATGCTCATCTTTTCCAAAATAGGCT
*
89686190 GAATGCTCATCTTTTCCAAAATAGGTT
1 GAATGCTCATCTTTTCCAAAATAGGCT
* *
89686217 GAATGCTCCTCTTTTTCAAAATA
1 GAATGCTCATCTTTTCCAAAATA
89686240 AGTCGAATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (27 bp):
GAATGCTCATCTTTTCCAAAATAGGCT
Found at i:89686247 original size:27 final size:27
Alignment explanation
Indices: 89686157--89686248 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
89686147 ATGACACTAC
* *
89686157 TAAGCCGAATGCTTATCTTTTCCAAAA
1 TAAGTCGAATGCTCATCTTTTCCAAAA
*
89686184 T-AGGCTGAATGCTCATCTTTTCCAAAA
1 TAAGTC-GAATGCTCATCTTTTCCAAAA
* * * *
89686211 TAGGTTGAATGCTCCTCTTTTTCAAAA
1 TAAGTCGAATGCTCATCTTTTCCAAAA
89686238 TAAGTCGAATG
1 TAAGTCGAATG
89686249 TTCCTTTCAT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (27 bp):
TAAGTCGAATGCTCATCTTTTCCAAAA
Found at i:89692501 original size:18 final size:18
Alignment explanation
Indices: 89692478--89692570 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
89692468 TACGACCGTT
* *
89692478 TACGGTATTATTCATGTA
1 TACGGTACTATTCACGTA
89692496 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
89692514 TACGATACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
89692532 TATGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
89692550 TACGGTATTGTTCACGTA
1 TACGGTACTATTCACGTA
89692568 TAC
1 TAC
89692571 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:89701250 original size:6 final size:6
Alignment explanation
Indices: 89701241--89701273 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
89701231 TAATTCATGA
89701241 GGGCTG GGGCTG GGGCTG GGGCTG GGGCTG GGG
1 GGGCTG GGGCTG GGGCTG GGGCTG GGGCTG GGG
89701274 GCTCATTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.15, G:0.70, T:0.15
Consensus pattern (6 bp):
GGGCTG
Found at i:89704935 original size:23 final size:21
Alignment explanation
Indices: 89704900--89704941 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
89704890 ACCAACTTAC
89704900 ATATTGGTATGAGAATGAGGT
1 ATATTGGTATGAGAATGAGGT
*
89704921 ATATTGTGATATGAGTATGAG
1 ATATTG-G-TATGAGAATGAG
89704942 TGTTATATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (21 bp):
ATATTGGTATGAGAATGAGGT
Found at i:89706378 original size:21 final size:21
Alignment explanation
Indices: 89706342--89706410 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 21
89706332 TATATTAATT
*
89706342 AAAA-CAT-AAAGTAAATAAAC
1 AAAAGCATAAAAG-AAATAAAA
89706362 AAAAGCATAAAAGAAATGAAAA
1 AAAAGCATAAAAGAAAT-AAAA
*
89706384 AGAAAGGATAAACAG-AATAAAA
1 A-AAAGCATAAA-AGAAATAAAA
89706406 GAAAA
1 -AAAA
89706411 CGAAACAGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
20 4 0.10
21 7 0.17
22 15 0.37
23 13 0.32
24 2 0.05
ACGTcount: A:0.71, C:0.06, G:0.13, T:0.10
Consensus pattern (21 bp):
AAAAGCATAAAAGAAATAAAA
Found at i:89708085 original size:20 final size:19
Alignment explanation
Indices: 89708057--89708098 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
89708047 ATATTATATG
* *
89708057 AAATGAAAGTAATAAAAATA
1 AAATAAAAGGAAT-AAAATA
89708077 AAATAAAAGGAATAAAATA
1 AAATAAAAGGAATAAAATA
89708096 AAA
1 AAA
89708099 CCACTTGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.17
Consensus pattern (19 bp):
AAATAAAAGGAATAAAATA
Found at i:89709880 original size:39 final size:39
Alignment explanation
Indices: 89709835--89709972 Score: 224
Period size: 39 Copynumber: 3.5 Consensus size: 39
89709825 TGCAAGATAC
*
89709835 TGGAAATGTATCCGGGCTAAAGTCTTGCAGGCTTCGTGA
1 TGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGA
* *
89709874 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGA
*
89709913 TGGAAATGTATCCGGGCTAAAGTCTCGTAGGCTTCGTGCA
1 TGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG-A
89709953 -GGAAATGTATCCGGGCTAAA
1 TGGAAATGTATCCGGGCTAAA
89709973 ATCCCGTAAG
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGA
Found at i:89709932 original size:78 final size:78
Alignment explanation
Indices: 89709834--89709978 Score: 247
Period size: 78 Copynumber: 1.9 Consensus size: 78
89709824 ATGCAAGATA
* *
89709834 CTGGAAATGTATCCGGGCTAAAGTCTTGCAGGCTTCGTG-ATGGAAATGTATCCGGGCTAAAGTC
1 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCA-GGAAATGTATCCGGGCTAAAATC
89709898 CCGCAGGCTTCGTG
65 CCGCAGGCTTCGTG
*
89709912 CTGGAAATGTATCCGGGCTAAAGTCTCGTAGGCTTCGTGCAGGAAATGTATCCGGGCTAAAATCC
1 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCAGGAAATGTATCCGGGCTAAAATCC
89709977 CG
66 CG
89709979 TAAGCTTTGT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 62 0.98
79 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (78 bp):
CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTGCAGGAAATGTATCCGGGCTAAAATCC
CGCAGGCTTCGTG
Found at i:89713397 original size:16 final size:16
Alignment explanation
Indices: 89713376--89713407 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
89713366 TGAAATTCGC
89713376 TTAACAAAATAGTCCT
1 TTAACAAAATAGTCCT
89713392 TTAACAAAATAGTCCT
1 TTAACAAAATAGTCCT
89713408 AAAATATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
TTAACAAAATAGTCCT
Found at i:89716040 original size:43 final size:42
Alignment explanation
Indices: 89715992--89716153 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 42
89715982 AGTAAATACA
*
89715992 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCAAA-ATCG
* * *
89716035 ATGCCACTGTCCCAGACAG-GGTCTTACATGAAATC-ATATACG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCAAAAT-CG
* * * * * *
89716077 AAGACACTATCCCAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGT-AATCA-AAATCG
* *
89716121 ATGCCAAC-GTCCCAAACGTGGCCTTACACGTAA
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAA
89716154 AACAGATATC
Statistics
Matches: 94, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 34 0.36
44 25 0.27
45 4 0.04
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCAAAATCG
Found at i:89716102 original size:42 final size:43
Alignment explanation
Indices: 89716001--89716104 Score: 129
Period size: 42 Copynumber: 2.4 Consensus size: 43
89715991 AATGCCAACG
* * * * *
89716001 TCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGAAATCAAACATCGAAGACACTA
* * *
89716044 TCCCAGACAGGGTCTTACATGAAATCATATA-CGAAGACACTA
1 TCCCAGACATGGTCTTACATGAAATCAAACATCGAAGACACTA
89716086 TCCCAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
89716105 CGTAAAACAG
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGAAATCAAACATCGAAGACACTA
Found at i:89718499 original size:18 final size:17
Alignment explanation
Indices: 89718478--89718511 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
89718468 TAATTCTACT
89718478 CAAAAATAATTTTTGATC
1 CAAAAAT-ATTTTTGATC
*
89718496 CAAAAGTATTTTTGAT
1 CAAAAATATTTTTGAT
89718512 AAATAATGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (17 bp):
CAAAAATATTTTTGATC
Found at i:89730479 original size:24 final size:26
Alignment explanation
Indices: 89730434--89730485 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
89730424 GCTTGATAAC
89730434 AAATATAAGATAACAATCATGA-ATA
1 AAATATAAGATAACAATCATGATATA
*
89730459 AAATATAA-ATAA-ACATGATGATATA
1 AAATATAAGATAACA-ATCATGATATA
89730484 AA
1 AA
89730486 TGGCGATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 1 0.04
24 10 0.42
25 13 0.54
ACGTcount: A:0.62, C:0.06, G:0.08, T:0.25
Consensus pattern (26 bp):
AAATATAAGATAACAATCATGATATA
Found at i:89733381 original size:27 final size:26
Alignment explanation
Indices: 89733351--89733415 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
89733341 TTAAAGAATT
*
89733351 TTAGCGCGCTCTCTGATAATTAGCACG
1 TTAG-GCGCTCTCTGATAATTAGCACA
* *
89733378 TTA-GTGCTCTCTGATTATTAGCACA
1 TTAGGCGCTCTCTGATAATTAGCACA
*
89733403 TTA-GTGCTCTCTG
1 TTAGGCGCTCTCTG
89733416 TTTATCACAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 32 0.91
27 3 0.09
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
TTAGGCGCTCTCTGATAATTAGCACA
Found at i:89733387 original size:25 final size:25
Alignment explanation
Indices: 89733358--89733442 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 25
89733348 ATTTTAGCGC
*
89733358 GCTCTCTGATAATTAGCACGTTAGT
1 GCTCTCTGATAATTAGCACATTAGT
*
89733383 GCTCTCTGATTATTAGCACATTAGT
1 GCTCTCTGATAATTAGCACATTAGT
* *
89733408 GCTCTCTG-T--TTATCACATTTGT
1 GCTCTCTGATAATTAGCACATTAGT
89733430 GCTCTCTGTATAA
1 GCTCTCTG-ATAA
89733443 CATTTTAGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
22 19 0.37
24 2 0.04
25 31 0.60
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (25 bp):
GCTCTCTGATAATTAGCACATTAGT
Found at i:89733453 original size:22 final size:22
Alignment explanation
Indices: 89733378--89733461 Score: 75
Period size: 22 Copynumber: 3.7 Consensus size: 22
89733368 AATTAGCACG
89733378 TTAGTGCTCTCTGATTATTAGCACA-
1 TTAGTGCTCTCTG-TTA-TA--ACAT
*
89733403 TTAGTGCTCTCTGTTTATCACAT
1 TTAGTGCTCTCTG-TTATAACAT
89733426 TT-GTGCTCTCTG-TATAACATT
1 TTAGTGCTCTCTGTTATAACA-T
*
89733447 TTAGTGCTCTTTGTT
1 TTAGTGCTCTCTGTT
89733462 CATTAGTGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
20 6 0.12
21 3 0.06
22 22 0.43
23 3 0.06
24 1 0.02
25 16 0.31
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (22 bp):
TTAGTGCTCTCTGTTATAACAT
Found at i:89734323 original size:14 final size:16
Alignment explanation
Indices: 89734287--89734327 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
89734277 TTGATATAGT
89734287 TTTTAAATATATATGA
1 TTTTAAATATATATGA
*
89734303 TTTTAAATTTATAT-A
1 TTTTAAATATATATGA
89734318 -TTTAAATATA
1 TTTTAAATATA
89734328 GAATTAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 9 0.39
15 1 0.04
16 13 0.57
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
TTTTAAATATATATGA
Found at i:89743525 original size:2 final size:2
Alignment explanation
Indices: 89743518--89743556 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
89743508 TTCATTATAA
89743518 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
89743557 TTCAGAAGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:89749579 original size:22 final size:23
Alignment explanation
Indices: 89749554--89749601 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
89749544 AACTTATCAA
*
89749554 TTTAAATATTATAA-TAAAA-ATT
1 TTTAAA-ATCATAATTAAAACATT
89749576 TTTAAAATCATAATTAAAACATT
1 TTTAAAATCATAATTAAAACATT
89749599 TTT
1 TTT
89749602 TTAACATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 11 0.48
23 6 0.26
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (23 bp):
TTTAAAATCATAATTAAAACATT
Found at i:89753750 original size:25 final size:25
Alignment explanation
Indices: 89753668--89753737 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
89753658 CAACTCTTAC
89753668 GAGCTTACCGATATTCAGCTCGTAT
1 GAGCTTACCGATATTCAGCTCGTAT
89753693 GAGCTTACCGATATTCAGCTCGTAT
1 GAGCTTACCGATATTCAGCTCGTAT
* *
89753718 GAGTTTACCGTTATTCAGCT
1 GAGCTTACCGATATTCAGCT
89753738 TGGAGGAGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTACCGATATTCAGCTCGTAT
Found at i:89763361 original size:14 final size:15
Alignment explanation
Indices: 89763344--89763378 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
89763334 AAAGTTTAGA
89763344 TAAA-ACATGAAATC
1 TAAATACATGAAATC
*
89763358 TAAATATATGAAATC
1 TAAATACATGAAATC
89763373 TAAATA
1 TAAATA
89763379 TTAAGAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.57, C:0.09, G:0.06, T:0.29
Consensus pattern (15 bp):
TAAATACATGAAATC
Found at i:89763370 original size:15 final size:15
Alignment explanation
Indices: 89763350--89763379 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
89763340 TAGATAAAAC
89763350 ATGAAATCTAAATAT
1 ATGAAATCTAAATAT
89763365 ATGAAATCTAAATAT
1 ATGAAATCTAAATAT
89763380 TAAGAAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
ATGAAATCTAAATAT
Found at i:89763521 original size:19 final size:21
Alignment explanation
Indices: 89763489--89763535 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
89763479 GGTGAGAAAC
*
89763489 AAATTGAAAGTTTT-T-ATTT
1 AAATTTAAAGTTTTATAATTT
*
89763508 AAATTTAAATTTTTATAATTT
1 AAATTTAAAGTTTTATAATTT
89763529 -AATTTAA
1 AAATTTAA
89763536 TTTAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 12 0.50
20 8 0.33
21 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (21 bp):
AAATTTAAAGTTTTATAATTT
Found at i:89764857 original size:22 final size:23
Alignment explanation
Indices: 89764829--89764872 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
89764819 TAACAATATA
89764829 ATAAATATATAAATTT-ATTATC
1 ATAAATATATAAATTTAATTATC
*
89764851 ATAAATATATAAGTTTAATTAT
1 ATAAATATATAAATTTAATTAT
89764873 TATTTAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATAAATATATAAATTTAATTATC
Found at i:89765190 original size:6 final size:6
Alignment explanation
Indices: 89765179--89765263 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
89765169 CATTCTATAA
*
89765179 AATTAT AATTAT AATTAT AATTAT AATT-T ATGTTAT -ATTAT -ATTATCT
1 AATTAT AATTAT AATTAT AATTAT AATTAT A-ATTAT AATTAT AATTA--T
*
89765227 AA-TAT AAATAT AAATT-T AATTATT AATTAT -ATTAT AA
1 AATTAT AATTAT -AATTAT AATTA-T AATTAT AATTAT AA
89765264 ATGCATTATA
Statistics
Matches: 66, Mismatches: 3, Indels: 20
0.74 0.03 0.22
Matches are distributed among these distances:
5 22 0.33
6 30 0.45
7 13 0.20
8 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (6 bp):
AATTAT
Found at i:89769832 original size:3 final size:3
Alignment explanation
Indices: 89769824--89770189 Score: 133
Period size: 3 Copynumber: 120.7 Consensus size: 3
89769814 AATAACATAT
* * *
89769824 ATA ATA AT- ATG ACA ATA ATA ATA ACA ATA ATA ATAA ATAA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA
* * * *
89769871 ATG ATA ATA AAA ATA ATA ATA A-A GAAA ATA CA-G ATA A-A ATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA ATA ATA A-TA ATA
* * * * * *
89769916 ATG ATA CTA ACGA AT- ATA AGTA ATA GTA GTA A-A AAA ATA ATAA ATA
1 ATA ATA ATA A-TA ATA ATA A-TA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * * ** *
89769962 ATA ATA GTA ACA ATA ATG ATA ATAA ATA TTA GCA GTA A-A A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
** * * * *
89770006 ATA ATA GGA ATA ATA ATA ACA ATA ATA ATA GTA ATA ATA AGA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** * * * *
89770054 ATA TTA GTA TTA ATA ATA AGG ATA ATA GTA GAAA ATA AAA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * *
89770100 ATA AT- ATA GTA ATA ATA ATA A-A AGCA AAA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * * *
89770144 ATG GTA AAA ATAA ATA GTA ATA ATA ATA ATA CA-A ATA ATAA ATA AT
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA ATA AT-A ATA AT
89770190 CTAAAGTTTA
Statistics
Matches: 266, Mismatches: 74, Indels: 46
0.69 0.19 0.12
Matches are distributed among these distances:
2 19 0.07
3 211 0.79
4 36 0.14
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:89769870 original size:18 final size:16
Alignment explanation
Indices: 89769837--89769898 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
89769827 ATAATATGAC
*
89769837 AATAAT-AATAACAAT
1 AATAATAAATAAAAAT
*
89769852 AATAATAAATAAATA-
1 AATAATAAATAAAAAT
89769867 AATAATGATAATAAAAAT
1 AATAAT-A-AATAAAAAT
*
89769885 AATAATAAAGAAAA
1 AATAATAAATAAAA
89769899 TACAGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
15 12 0.31
16 13 0.33
17 8 0.21
18 6 0.15
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (16 bp):
AATAATAAATAAAAAT
Found at i:89770370 original size:3 final size:3
Alignment explanation
Indices: 89770357--89770495 Score: 61
Period size: 3 Copynumber: 46.0 Consensus size: 3
89770347 GAAAATATAC
* * * *
89770357 AAT AGT AAT AAT AAT AAA AAGGT AAT AAT AAT -AT ATT AGAT AGT AAAT
1 AAT AAT AAT AAT AAT AAT AA--T AAT AAT AAT AAT AAT A-AT AAT -AAT
* * * * * **
89770405 AAT AAT AAT AAT AAT AAC AGT AAT AA- AA- AAT GAT AAT AGT GAT GTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
89770451 AGT AAT AAT AAT AAC AAT -AT ATT AAT CAT AAT ATAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
89770496 GACAATAACA
Statistics
Matches: 99, Mismatches: 29, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
2 8 0.08
3 82 0.83
4 7 0.07
5 2 0.02
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:89770426 original size:25 final size:24
Alignment explanation
Indices: 89770379--89770443 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
89770369 AATAAAAAGG
* *
89770379 TAATAATAATATATTAGATAGTAAA
1 TAATAATAATATAATAGACAGT-AA
89770404 TAATAATAATAATAATA-ACAGTAA
1 TAATAATAAT-ATAATAGACAGTAA
89770428 TAA-AA-AATGATAATAG
1 TAATAATAAT-ATAATAG
89770444 TGATGTTAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
22 9 0.26
23 2 0.06
24 5 0.14
25 14 0.40
26 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (24 bp):
TAATAATAATATAATAGACAGTAA
Found at i:89772149 original size:3 final size:3
Alignment explanation
Indices: 89772141--89772166 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
89772131 TTTTCGTAAA
89772141 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
89772167 TTTAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:89773008 original size:27 final size:27
Alignment explanation
Indices: 89772946--89773011 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 27
89772936 ATATCCAACA
*
89772946 CAAACACATCTAGAATATTATAAATCCTC
1 CAAACACA-CTAG-ATATAATAAATCCTC
*
89772975 CATAACACACTAG-TATAATATATCCTCC
1 CA-AACACACTAGATATAATAAATCCT-C
89773003 CAAACACAC
1 CAAACACAC
89773012 CAATAAGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 18 0.55
28 3 0.09
29 6 0.18
30 6 0.18
ACGTcount: A:0.44, C:0.29, G:0.03, T:0.24
Consensus pattern (27 bp):
CAAACACACTAGATATAATAAATCCTC
Found at i:89773516 original size:13 final size:14
Alignment explanation
Indices: 89773472--89773514 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
89773462 AATCTTTAGT
*
89773472 TTTCCTT-TTTTTT
1 TTTCCTTATTTTTC
89773485 TTTCCTTATTTTTC
1 TTTCCTTATTTTTC
89773499 TTTCC-TATTCTTTC
1 TTTCCTTATT-TTTC
89773513 TT
1 TT
89773515 CCCCTGTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCCTTATTTTTC
Found at i:89774781 original size:47 final size:47
Alignment explanation
Indices: 89774672--89774782 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
89774662 CCGGGATAAG
*
89774672 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
89774719 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
89774766 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
89774783 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:89776234 original size:31 final size:31
Alignment explanation
Indices: 89776199--89776264 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
89776189 TAATTAATAA
*
89776199 TTTTAATAA-TAATAA-ACATCTAATAAATATC
1 TTTTAATAATTAATAATACATAT-A-AAATATC
*
89776230 TTTTACTAATTAATAATACATATAAAATATC
1 TTTTAATAATTAATAATACATATAAAATATC
89776261 TTTT
1 TTTT
89776265 CGCTAATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 19 0.61
32 7 0.23
33 5 0.16
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (31 bp):
TTTTAATAATTAATAATACATATAAAATATC
Found at i:89776855 original size:14 final size:14
Alignment explanation
Indices: 89776829--89776867 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
89776819 TTTCTTTTTA
89776829 AATTTTAAT-TATT
1 AATTTTAATATATT
*
89776842 AATTTTATTATATT
1 AATTTTAATATATT
*
89776856 ATTTTTAATATA
1 AATTTTAATATA
89776868 AATATAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
AATTTTAATATATT
Found at i:89776877 original size:18 final size:16
Alignment explanation
Indices: 89776851--89776892 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
89776841 TAATTTTATT
*
89776851 ATATTATTTTTAATATAA
1 ATATAATTTTTAA-AT-A
89776869 ATATAA-TTTTAAATA
1 ATATAATTTTTAAATA
89776884 ATATAATTT
1 ATATAATTT
89776893 GTGTAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 4 0.18
17 6 0.27
18 5 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATTTTTAAATA
Found at i:89776888 original size:15 final size:17
Alignment explanation
Indices: 89776858--89776892 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
89776848 ATTATATTAT
89776858 TTTTAATATAAATATAA
1 TTTTAATATAAATATAA
89776875 TTTTAA-AT-AATATAA
1 TTTTAATATAAATATAA
89776890 TTT
1 TTT
89776893 GTGTAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 2 0.11
17 6 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTAATATAAATATAA
Found at i:89786064 original size:17 final size:17
Alignment explanation
Indices: 89786036--89786068 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
89786026 TTATATATAA
89786036 TTTTTAATTTAAATTATT
1 TTTTTAATTT-AATTATT
89786054 TTTTTAA-TTAATTAT
1 TTTTTAATTTAATTAT
89786069 ATGAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTAATTTAATTATT
Found at i:89796166 original size:3 final size:3
Alignment explanation
Indices: 89796158--89796183 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
89796148 GAGGTGGGTT
89796158 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
89796184 GTAAATTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:89800042 original size:42 final size:42
Alignment explanation
Indices: 89799995--89800074 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
89799985 GAAAAAGAAG
*
89799995 AAGAAATAATGATCATTGCTTAAATGCACTTAACATGGTATT
1 AAGAAATAATAATCATTGCTTAAATGCACTTAACATGGTATT
**
89800037 AAGAAATAATAATCATTGCTTATCTGCACTTAACATGG
1 AAGAAATAATAATCATTGCTTAAATGCACTTAACATGG
89800075 AGAATATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (42 bp):
AAGAAATAATAATCATTGCTTAAATGCACTTAACATGGTATT
Found at i:89812174 original size:34 final size:34
Alignment explanation
Indices: 89812131--89812199 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
89812121 GGAATGAAAG
89812131 AAAGAATATTATAATTTGTTGGTATGATTTCCAA
1 AAAGAATATTATAATTTGTTGGTATGATTTCCAA
89812165 AAAGAATATTATAATTTGTTGGTATGATTTCCAA
1 AAAGAATATTATAATTTGTTGGTATGATTTCCAA
89812199 A
1 A
89812200 TGAAATCTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (34 bp):
AAAGAATATTATAATTTGTTGGTATGATTTCCAA
Found at i:89817750 original size:90 final size:90
Alignment explanation
Indices: 89817597--89817775 Score: 358
Period size: 90 Copynumber: 2.0 Consensus size: 90
89817587 TTTATCTTAC
89817597 CAAGGCCCATCACTTTGACAATGAAAAAAACCCACCATGTATCATTTGTCGGTTGTAAATTATGT
1 CAAGGCCCATCACTTTGACAATGAAAAAAACCCACCATGTATCATTTGTCGGTTGTAAATTATGT
89817662 CAATCTATCATTATGCATACCAAGT
66 CAATCTATCATTATGCATACCAAGT
89817687 CAAGGCCCATCACTTTGACAATGAAAAAAACCCACCATGTATCATTTGTCGGTTGTAAATTATGT
1 CAAGGCCCATCACTTTGACAATGAAAAAAACCCACCATGTATCATTTGTCGGTTGTAAATTATGT
89817752 CAATCTATCATTATGCATACCAAG
66 CAATCTATCATTATGCATACCAAG
89817776 AGGACTTTAT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (90 bp):
CAAGGCCCATCACTTTGACAATGAAAAAAACCCACCATGTATCATTTGTCGGTTGTAAATTATGT
CAATCTATCATTATGCATACCAAGT
Found at i:89822711 original size:26 final size:27
Alignment explanation
Indices: 89822666--89822718 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
89822656 AATGGTATAT
89822666 TTTTTCAACGGAAAACTTTTTTCTAAA
1 TTTTTCAACGGAAAACTTTTTTCTAAA
*
89822693 TTTTTCAACGGAAAATTTTTTTCTAA
1 TTTTTCAACGGAAAACTTTTTTCTAA
89822719 CATCTAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (27 bp):
TTTTTCAACGGAAAACTTTTTTCTAAA
Found at i:89823246 original size:18 final size:19
Alignment explanation
Indices: 89823213--89823248 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
89823203 AAAATGTGTT
*
89823213 TTTGAATGTTATTATTATA
1 TTTGAATGTAATTATTATA
89823232 TTTGAATG-AATTATTAT
1 TTTGAATGTAATTATTAT
89823249 TAATTCAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (19 bp):
TTTGAATGTAATTATTATA
Found at i:89825895 original size:40 final size:40
Alignment explanation
Indices: 89825841--89826027 Score: 311
Period size: 40 Copynumber: 4.7 Consensus size: 40
89825831 CAATTGAGGA
* *
89825841 TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
89825881 TTATATCCGGGTTAAGTCTCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
89825921 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
89825961 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
89826001 TTATATCCGGGCTAAATCTCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
89826028 ATTGGGTTGG
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:89827576 original size:13 final size:13
Alignment explanation
Indices: 89827560--89827586 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89827550 AAAATATGAA
89827560 AGCAAATTATGGT
1 AGCAAATTATGGT
89827573 AGCAAATTATGGT
1 AGCAAATTATGGT
89827586 A
1 A
89827587 TTAACACGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (13 bp):
AGCAAATTATGGT
Found at i:89828028 original size:24 final size:25
Alignment explanation
Indices: 89827995--89828056 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
89827985 AATAATACAT
*
89827995 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
89828020 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
89828044 TACATAATATATA
1 TACATAATATATA
89828057 CATAACGTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:89828135 original size:19 final size:18
Alignment explanation
Indices: 89828098--89828138 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
89828088 ATATTAAAAC
* *
89828098 ATATACATGACATACATA
1 ATATACATGAAAAACATA
89828116 ATATACATGAAAAAACATA
1 ATATACATG-AAAAACATA
89828135 ATAT
1 ATAT
89828139 GATATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (18 bp):
ATATACATGAAAAACATA
Found at i:89828330 original size:21 final size:21
Alignment explanation
Indices: 89828279--89828330 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
89828269 ATAATAACAA
*
89828279 TAATATATAAATGTATATGTAT
1 TAATAT-TAAATGTATATATAT
* *
89828301 TTATGTTAAA-GATATATATAT
1 TAATATTAAATG-TATATATAT
89828322 TAATATTAA
1 TAATATTAA
89828331 TAATAAATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 1 0.04
21 19 0.79
22 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (21 bp):
TAATATTAAATGTATATATAT
Found at i:89828438 original size:23 final size:23
Alignment explanation
Indices: 89828412--89828458 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
89828402 CTATATTGGG
*
89828412 AACAACAATAATAATATATATAA
1 AACAACAATAAGAATATATATAA
*
89828435 AACAACTATAAGAATATATATAA
1 AACAACAATAAGAATATATATAA
89828458 A
1 A
89828459 GTATATACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.26
Consensus pattern (23 bp):
AACAACAATAAGAATATATATAA
Found at i:89830029 original size:42 final size:43
Alignment explanation
Indices: 89829920--89830071 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 43
89829910 AGACATTGAT
* *
89829920 TTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGG-CTTGTCATCA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTC-TGT-A-AA
* * * * *
89829964 TT-GATCTGTT-TCCTAACCGCTTAGGGGTTT-AGTTCTGTAAA
1 TTCAACCTGTTACCCT-ACTGCTTAGGGGTTTAAGGTCTGTAAA
89830005 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAA
*** *
89830048 TTTGGCTTGTTACCCTACTGCTTA
1 TTCAACCTGTTACCCTACTGCTTA
89830072 AAGGGTTAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 24 0.28
43 54 0.63
44 5 0.06
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (43 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAA
Found at i:89830471 original size:44 final size:44
Alignment explanation
Indices: 89830410--89830564 Score: 170
Period size: 44 Copynumber: 3.5 Consensus size: 44
89830400 AAATTTGGCT
*
89830410 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATC
* * * * * *
89830454 TGTTTCCCTACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTC-ATTAACTTCGATC
* **
89830497 TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCGTTGCCTTCGATC
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATC
* *
89830542 TGTTTCCCTACTGCTTATGGGGT
1 TGTTACCCTACTGCTTAGGGGGT
89830565 AAGATCTGTT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
43 7 0.08
44 75 0.84
45 7 0.08
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATC
Found at i:89830508 original size:88 final size:87
Alignment explanation
Indices: 89830407--89830571 Score: 278
Period size: 88 Copynumber: 1.9 Consensus size: 87
89830397 TGTAAATTTG
*
89830407 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCTTCGATCTGTTTCCCTACTGCTTA-
1 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCTGTTTCCCTACTGCTTAT
89830471 GGGTGATAAGATCTATGAACTTCA
66 GGG-G-TAAGATCTATGAACTTCA
* *
89830495 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCGTTGCCTTCGATCTGTTTCCCTACTGCTTAT
1 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCTGTTTCCCTACTGCTTAT
89830560 GGGGTAAGATCT
66 GGGGTAAGATCT
89830572 GTTAATTCAC
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
87 8 0.11
88 62 0.85
89 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (87 bp):
GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCTGTTTCCCTACTGCTTAT
GGGGTAAGATCTATGAACTTCA
Found at i:89845415 original size:53 final size:53
Alignment explanation
Indices: 89845354--89845482 Score: 197
Period size: 53 Copynumber: 2.4 Consensus size: 53
89845344 TGTGCACGTT
*
89845354 TAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACTCCGTA
1 TAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACTCCGTA
* * *
89845407 TAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATTCTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACTCCGTA
*
89845460 TAAGACCAT-GTCTGGGATATGGC
1 TAAGACCATAG-CTGGGCTATGGC
89845483 TTCGATATGA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 1 0.01
53 69 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
TAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACTCCGTA
Found at i:89849698 original size:10 final size:10
Alignment explanation
Indices: 89849685--89849726 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
89849675 CATTTTCAAA
89849685 TTTTTTTTCT
1 TTTTTTTTCT
* *
89849695 TTTTCTTTCA
1 TTTTTTTTCT
89849705 TTTTTTTTCT
1 TTTTTTTTCT
*
89849715 TCTTTTTTCT
1 TTTTTTTTCT
89849725 TT
1 TT
89849727 CAAATCTGTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:89849721 original size:24 final size:22
Alignment explanation
Indices: 89849685--89849728 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
89849675 CATTTTCAAA
89849685 TTTTTTTTCTTTTTCTTTCATT
1 TTTTTTTTCTTTTTCTTTCATT
89849707 TTTTTTCTTCTTTTTTCTTTCA
1 TTTTTT-TTC-TTTTTCTTTCA
89849729 AATCTGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTTTTCTTTTTCTTTCATT
Found at i:89850389 original size:15 final size:16
Alignment explanation
Indices: 89850369--89850416 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
89850359 CTTTTAATAT
89850369 TATTTAATATT-TTTA
1 TATTTAATATTATTTA
*
89850384 TATTTACTATTATTTA
1 TATTTAATATTATTTA
*
89850400 TA-TTATTATTAGTTTA
1 TATTTAATATTA-TTTA
89850416 T
1 T
89850417 TTTTTATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTTAATATTATTTA
Found at i:89850389 original size:25 final size:24
Alignment explanation
Indices: 89850361--89850474 Score: 70
Period size: 25 Copynumber: 4.5 Consensus size: 24
89850351 ATTAATTACT
*
89850361 TTTAATATTATTTAATATTTTTATA
1 TTTAATATTATTT-ATATTATTATA
*
89850386 TTTACTATTATTTATATTATTATTA
1 TTTAATATTATTTATATTATTA-TA
* * *
89850411 GTTTATTTTTTATTATATATGTATATATC
1 -TTTA-ATATTATT-TATAT-TAT-TATA
*
89850440 TTTAATATATATGTATA-TATT-TA
1 TTTAATAT-TATTTATATTATTATA
* *
89850463 TATAGTATTATT
1 TTTAATATTATT
89850475 AATAGTTGTT
Statistics
Matches: 70, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
22 3 0.04
23 7 0.10
24 9 0.13
25 17 0.24
26 4 0.06
27 12 0.17
28 12 0.17
29 4 0.06
30 2 0.03
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTAATATTATTTATATTATTATA
Found at i:89850423 original size:15 final size:15
Alignment explanation
Indices: 89850376--89850426 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
89850366 TATTATTTAA
*
89850376 TATT-TTTATATTTAC
1 TATTATTTATA-TTAT
89850391 TATTATTTATATTAT
1 TATTATTTATATTAT
*
89850406 TATTAGTTTAT-TTTT
1 TATTA-TTTATATTAT
89850421 TATTAT
1 TATTAT
89850427 ATATGTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 1 0.03
15 20 0.62
16 11 0.34
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (15 bp):
TATTATTTATATTAT
Found at i:89850443 original size:21 final size:21
Alignment explanation
Indices: 89850419--89850459 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
89850409 TAGTTTATTT
*
89850419 TTTATTATATATGTATATATC
1 TTTAATATATATGTATATATC
89850440 TTTAATATATATGTATATAT
1 TTTAATATATATGTATATAT
89850460 TTATATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTAATATATATGTATATATC
Found at i:89850524 original size:11 final size:11
Alignment explanation
Indices: 89850508--89850599 Score: 51
Period size: 11 Copynumber: 8.1 Consensus size: 11
89850498 TTATTTCTAA
89850508 TATGTATATAT
1 TATGTATATAT
89850519 TATGTATATAT
1 TATGTATATAT
* *
89850530 TTTTTATATATGT
1 TATGTATATA--T
*
89850543 TACGTATATA-
1 TATGTATATAT
* * *
89850553 TATATATCTTT
1 TATGTATATAT
**
89850564 TAAATATTATATT
1 TATGTA-TATA-T
* *
89850577 TTTATATATAT
1 TATGTATATAT
89850588 TATGTATATAT
1 TATGTATATAT
89850599 T
1 T
89850600 TTTAATATCA
Statistics
Matches: 60, Mismatches: 16, Indels: 10
0.70 0.19 0.12
Matches are distributed among these distances:
10 6 0.10
11 35 0.58
12 6 0.10
13 13 0.22
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (11 bp):
TATGTATATAT
Found at i:89850588 original size:17 final size:18
Alignment explanation
Indices: 89850547--89850590 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
89850537 ATATGTTACG
89850547 TATATATA-TATATCTTT
1 TATATATATTATATCTTT
89850564 TA-A-ATATTATAT-TTT
1 TATATATATTATATCTTT
89850579 TATATATATTAT
1 TATATATATTAT
89850591 GTATATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.33
16 7 0.29
17 9 0.38
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TATATATATTATATCTTT
Found at i:89850711 original size:25 final size:24
Alignment explanation
Indices: 89850512--89850707 Score: 136
Period size: 25 Copynumber: 8.1 Consensus size: 24
89850502 TTCTAATATG
*
89850512 TATATATTATGTATATATTTTTTA
1 TATATATTATGTATATATTTTTAA
* * *
89850536 TATATGTTACGTATATA--TAT-A
1 TATATATTATGTATATATTTTTAA
* * ** *
89850557 TATCTTTTAAATATTATATTTTTAT
1 TATATATTATGTA-TATATTTTTAA
89850582 -ATATATTATGTATATATTTTTAA
1 TATATATTATGTATATATTTTTAA
*
89850605 TATCATACTAT-TCATATATTTTT-A
1 TAT-ATATTATGT-ATATATTTTTAA
*
89850629 TGT-TATCTCATGTATATATTTTTTAA
1 TATATAT-T-ATGTATATA-TTTTTAA
*
89850655 TAATTATATTATGTATGTATTTTTAA
1 T-A-TATATTATGTATATATTTTTAA
* *
89850681 CACTATATTATGTACATATTTTTAA
1 TA-TATATTATGTATATATTTTTAA
89850706 TA
1 TA
89850708 CTATGTATAT
Statistics
Matches: 133, Mismatches: 24, Indels: 29
0.72 0.13 0.16
Matches are distributed among these distances:
21 10 0.08
22 8 0.06
23 11 0.08
24 38 0.29
25 44 0.33
26 9 0.07
27 8 0.06
28 2 0.02
29 3 0.02
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (24 bp):
TATATATTATGTATATATTTTTAA
Found at i:89850818 original size:18 final size:18
Alignment explanation
Indices: 89850780--89850814 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
89850770 TATATATCGT
*
89850780 TATTATTAGTTATTTTTA
1 TATTATTAGCTATTTTTA
89850798 TATTATTA-CTATTTTTA
1 TATTATTAGCTATTTTTA
89850815 ATATATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
TATTATTAGCTATTTTTA
Found at i:89852027 original size:15 final size:15
Alignment explanation
Indices: 89852007--89852039 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
89851997 AACACGACCA
89852007 AAAGCAAAAAGAGTG
1 AAAGCAAAAAGAGTG
89852022 AAAGCAAAAAGAGTG
1 AAAGCAAAAAGAGTG
89852037 AAA
1 AAA
89852040 AAAAGGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.24, T:0.06
Consensus pattern (15 bp):
AAAGCAAAAAGAGTG
Found at i:89859970 original size:14 final size:15
Alignment explanation
Indices: 89859946--89859974 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
89859936 GCTAAATGTT
89859946 AAAAAGAGAAAAAAA
1 AAAAAGAGAAAAAAA
89859961 AAAAAG-GAAAAAAA
1 AAAAAGAGAAAAAAA
89859975 GGCTATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAGAGAAAAAAA
Found at i:89864526 original size:13 final size:13
Alignment explanation
Indices: 89864500--89864542 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
89864490 ATACTTAAGT
*
89864500 ATATAATACAATAA
1 ATATAATATAAT-A
89864514 TATATTAATATAATA
1 -ATA-TAATATAATA
89864529 ATATAATATAATA
1 ATATAATATAATA
89864542 A
1 A
89864543 AACATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 11 0.42
14 3 0.12
15 4 0.15
16 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:89864542 original size:8 final size:8
Alignment explanation
Indices: 89864502--89864536 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
89864492 ACTTAAGTAT
*
89864502 ATAATACA
1 ATAATATA
89864510 ATAATATA
1 ATAATATA
*
89864518 TTAATATA
1 ATAATATA
89864526 ATAATATA
1 ATAATATA
89864534 ATA
1 ATA
89864537 TAATAAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:89864631 original size:9 final size:9
Alignment explanation
Indices: 89864617--89864645 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
89864607 AACAGGGGAC
89864617 AAAGAAAGA
1 AAAGAAAGA
89864626 AAAGAAAGA
1 AAAGAAAGA
89864635 AAA-AAAGA
1 AAAGAAAGA
89864643 AAA
1 AAA
89864646 TTAGGGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAGAAAGA
Found at i:89865330 original size:5 final size:5
Alignment explanation
Indices: 89865315--89865359 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
89865305 TAATTGTAGT
* *
89865315 ATTGAA ATTGA ATTGA GTTGA ATTGA ATTGT ATTGA ATTGGA ATT
1 ATTG-A ATTGA ATTGA ATTGA ATTGA ATTGA ATTGA ATT-GA ATT
89865360 TATAAGTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (5 bp):
ATTGA
Found at i:89865340 original size:15 final size:15
Alignment explanation
Indices: 89865313--89865359 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 15
89865303 GATAATTGTA
89865313 GTATTGAAATTGAATT
1 GTATTG-AATTGAATT
89865329 G-AGTTGAATTGAATT
1 GTA-TTGAATTGAATT
89865344 GTATTGAATTGGAATT
1 GTATTGAATT-GAATT
89865360 TATAAGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 18 0.64
16 10 0.36
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (15 bp):
GTATTGAATTGAATT
Found at i:89867176 original size:15 final size:15
Alignment explanation
Indices: 89867156--89867189 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
89867146 TAACAAATAT
89867156 TTAATTTAACTAACA
1 TTAATTTAACTAACA
89867171 TTAATTTAACTAACA
1 TTAATTTAACTAACA
89867186 TTAA
1 TTAA
89867190 ACCAAAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAATTTAACTAACA
Found at i:89871183 original size:13 final size:14
Alignment explanation
Indices: 89871165--89871193 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
89871155 ATAGTTTTGG
89871165 ATAAAAA-TTAAAT
1 ATAAAAATTTAAAT
89871178 ATAAAAATTTAAAT
1 ATAAAAATTTAAAT
89871192 AT
1 AT
89871194 TTTATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAAAATTTAAAT
Found at i:89875694 original size:21 final size:21
Alignment explanation
Indices: 89875651--89875696 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
89875641 GATGAAGGAT
* *
89875651 GAAAACATGAAGCAAAGCGAC
1 GAAAACACGAAGCAAAGCAAC
*
89875672 GAAAACACGAAGCAAAGTAAC
1 GAAAACACGAAGCAAAGCAAC
89875693 GAAA
1 GAAA
89875697 TCCCTCCCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.17, G:0.22, T:0.04
Consensus pattern (21 bp):
GAAAACACGAAGCAAAGCAAC
Found at i:89878518 original size:6 final size:6
Alignment explanation
Indices: 89878509--89878541 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
89878499 TTTTTATATC
89878509 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
89878542 TATTAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:89878520 original size:27 final size:28
Alignment explanation
Indices: 89878465--89878521 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
89878455 AAAAACTTTT
** *
89878465 AAATTATTTTCATTATTGTAAATATAAA
1 AAATTATTTTCATTATCATAAAAATAAA
*
89878493 AAATTATTTTTA-TATCATAAAAATAAA
1 AAATTATTTTCATTATCATAAAAATAAA
89878520 AA
1 AA
89878522 TAAAAATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (28 bp):
AAATTATTTTCATTATCATAAAAATAAA
Found at i:89883461 original size:8 final size:8
Alignment explanation
Indices: 89883450--89883479 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
89883440 TTTTTTTTCC
89883450 TTTTTTGA
1 TTTTTTGA
89883458 TTTTTTGA
1 TTTTTTGA
89883466 TTTTTTGA
1 TTTTTTGA
89883474 TTTTTT
1 TTTTTT
89883480 TTAAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (8 bp):
TTTTTTGA
Found at i:89883463 original size:16 final size:16
Alignment explanation
Indices: 89883442--89883479 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
89883432 TTTTCTTCTT
*
89883442 TTTTTTCCTTTTTTGA
1 TTTTTTCATTTTTTGA
*
89883458 TTTTTTGATTTTTTGA
1 TTTTTTCATTTTTTGA
89883474 TTTTTT
1 TTTTTT
89883480 TTAAATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.05, G:0.08, T:0.79
Consensus pattern (16 bp):
TTTTTTCATTTTTTGA
Found at i:89883766 original size:118 final size:118
Alignment explanation
Indices: 89883606--89883836 Score: 381
Period size: 118 Copynumber: 2.0 Consensus size: 118
89883596 TATTTCCGGT
89883606 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
89883671 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
89883724 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* **
89883789 CCTACCCTGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
89883837 ATGGAAAACA
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:89884692 original size:42 final size:42
Alignment explanation
Indices: 89884624--89884722 Score: 153
Period size: 42 Copynumber: 2.4 Consensus size: 42
89884614 CTAAGGCTAA
* *
89884624 AATAGGACTGTTTGGCTGCAGAGATATGACATTCTGGGCTGG
1 AATAGAACTGTTTGGCAGCAGAGATATGACATTCTGGGCTGG
* * *
89884666 AATAGAACTGTTTGGCAGCAGGGATATGCCATTTTGGGCTGG
1 AATAGAACTGTTTGGCAGCAGAGATATGACATTCTGGGCTGG
89884708 AATAGAACTGTTTGG
1 AATAGAACTGTTTGG
89884723 TACTATAGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.29
Consensus pattern (42 bp):
AATAGAACTGTTTGGCAGCAGAGATATGACATTCTGGGCTGG
Found at i:89884878 original size:37 final size:36
Alignment explanation
Indices: 89884828--89884900 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 36
89884818 AATATTTAAC
* * *
89884828 TAAAATAAAATAAAATAAAATAATAAATCATAAATAA
1 TAAAAGAAAATAAAAGAAAATAATAAAT-AAAAATAA
*
89884865 TAAAAGAAAATAAAGGAAAATAATAAATAAAAATAA
1 TAAAAGAAAATAAAAGAAAATAATAAATAAAAATAA
89884901 AAATAAAGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 7 0.22
37 25 0.78
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (36 bp):
TAAAAGAAAATAAAAGAAAATAATAAATAAAAATAA
Found at i:89884904 original size:12 final size:13
Alignment explanation
Indices: 89884840--89884907 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
89884830 AAATAAAATA
89884840 AAAT-AAAATAAT
1 AAATAAAAATAAT
*
89884852 AAATCATAAATAAT
1 AAAT-AAAAATAAT
*
89884866 -AA-AAGAA-AAT
1 AAATAAAAATAAT
**
89884876 AAAGGAAAATAAT
1 AAATAAAAATAAT
89884889 AAATAAAAATAA-
1 AAATAAAAATAAT
89884901 AAATAAA
1 AAATAAA
89884908 GATTGGGTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
10 3 0.07
11 5 0.11
12 14 0.32
13 15 0.34
14 7 0.16
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.19
Consensus pattern (13 bp):
AAATAAAAATAAT
Found at i:89912453 original size:6 final size:6
Alignment explanation
Indices: 89912442--89912475 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
89912432 TAATGTAATT
89912442 TTTTAA TTTTAA TTTTAA TTTTAA TTTT-A TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
89912476 TATATTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:89917443 original size:17 final size:16
Alignment explanation
Indices: 89917421--89917464 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
89917411 TGAAAAGTGT
89917421 ATACATAATAATATTAG
1 ATACATAATAATA-TAG
*
89917438 ATACATACATAATATAT
1 ATACATA-ATAATATAG
89917455 ATACATAATA
1 ATACATAATA
89917465 TTAAAATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 3 0.12
17 16 0.64
18 6 0.24
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (16 bp):
ATACATAATAATATAG
Found at i:89917491 original size:25 final size:24
Alignment explanation
Indices: 89917451--89917497 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 24
89917441 CATACATAAT
89917451 ATATATACATAATATTA-AAATGA
1 ATATATACATAATATTAGAAATGA
*
89917474 ATATATACGATATGTATTAGAAAT
1 ATATATAC-ATA-ATATTAGAAAT
89917498 ACTAATAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 3 0.15
25 5 0.25
26 4 0.20
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATTAGAAATGA
Found at i:89918631 original size:3 final size:3
Alignment explanation
Indices: 89918625--89918680 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
89918615 CACTACTATG
89918625 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
89918673 TAA TAA TA
1 TAA TAA TA
89918681 TAGAAATTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:89919321 original size:6 final size:6
Alignment explanation
Indices: 89919310--89919346 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
89919300 GAAAAGAGAA
89919310 GGGAGG GGGA-G GGGAGG GGGAGG GGGAGG GGGAGG GG
1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GG
89919347 ATTTCCGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (6 bp):
GGGAGG
Found at i:89919324 original size:11 final size:11
Alignment explanation
Indices: 89919310--89919347 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
89919300 GAAAAGAGAA
89919310 GGGAGGGGGAG
1 GGGAGGGGGAG
89919321 GGGAGGGGGAGG
1 GGGAGGGGGA-G
89919333 GGGAGGGGGAG
1 GGGAGGGGGAG
89919344 GGGA
1 GGGA
89919348 TTTCCGGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 15 0.58
12 11 0.42
ACGTcount: A:0.18, C:0.00, G:0.82, T:0.00
Consensus pattern (11 bp):
GGGAGGGGGAG
Found at i:89919347 original size:17 final size:18
Alignment explanation
Indices: 89919310--89919346 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
89919300 GAAAAGAGAA
89919310 GGGAGGGGGA-GGGGAGG
1 GGGAGGGGGAGGGGGAGG
89919327 GGGAGGGGGAGGGGGAGG
1 GGGAGGGGGAGGGGGAGG
89919345 GG
1 GG
89919347 ATTTCCGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (18 bp):
GGGAGGGGGAGGGGGAGG
Found at i:89920009 original size:22 final size:22
Alignment explanation
Indices: 89919983--89920032 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
89919973 GGGTTTTTTG
*
89919983 TGGGTTTAATTGTAATGGGTTT
1 TGGGTTTAATTGTAATAGGTTT
89920005 TGGGTTTAATTGTAATAGGTTT
1 TGGGTTTAATTGTAATAGGTTT
89920027 TGGGTT
1 TGGGTT
89920033 AGTGACAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (22 bp):
TGGGTTTAATTGTAATAGGTTT
Found at i:89920874 original size:87 final size:90
Alignment explanation
Indices: 89920558--89920899 Score: 331
Period size: 89 Copynumber: 3.8 Consensus size: 90
89920548 AACAGACATT
* * * * * * *
89920558 AAAAACAGAA-ATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAACATGA
1 AAAAACAGAATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* ** *
89920622 GTTGGTTTCTTTG-AAACTTAATTTG-
66 GTT-GATT-TTTGAAAAGATAAATTGA
* * **
89920647 AAAAGCA-AATTTTGAAAATACCTCGACATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
89920711 GTTGATTTTTGAAAAATATAAATTGAAA
66 GTTGATTTTTG-AAAAGATAAATTG--A
* * * * *
89920739 AAAAACAGAA-ATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCCATATGA
1 AAAAACAGAATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
89920803 GTTTATTTTTG-GAAGA-AAATTG-
66 GTTGATTTTTGAAAAGATAAATTGA
* * * *
89920825 AAAAACGGAATTTTGAAAATACCTCGGCTTGTGACCCGAGGCCCAACTCATCTCTCGCAATATGA
1 AAAAACAGAATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
89920890 ATTGATTTTT
66 GTTGATTTTT
89920900 TTGAAAAACA
Statistics
Matches: 208, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
86 9 0.04
87 59 0.28
88 5 0.02
89 68 0.33
90 3 0.01
92 62 0.30
93 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (90 bp):
AAAAACAGAATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAGATAAATTGA
Found at i:89920919 original size:181 final size:180
Alignment explanation
Indices: 89920514--89920920 Score: 488
Period size: 181 Copynumber: 2.3 Consensus size: 180
89920504 CCTGAGTTCC
* *
89920514 ACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAGACATT----AAAAACAGAAATTGAA
1 ACTCATCTCTCGCAATATGAATTGA-TTTTTGAAAAACAGACATTGAAAAAAAACAGAAATTGAA
*
89920574 AATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAACATGAGTTGGTTTCTTTGAAAC
65 AATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAACATGAGTT-GTTTCTTTGAAAC
** * * ** *
89920639 TTAATTTGAAAAGCAAATTTTGAAAATACCTCGACATGTGACTTGAGGCTCA
129 GAAAATTGAAAAACAAATTTTGAAAATACCTCGACATGTGACCCGAGGCCCA
* * * * *
89920691 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAACAGAAATTGAAA
1 ACTCATCTCTCGCAATATGAATTGATTTTTGAAAAACAGACATTGAAAAAAAACAGAAATTGAAA
** * * * *
89920756 ATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCCATATGAGTT-TATT-TTTGGAA-G
66 ATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAACATGAGTTGT-TTCTTTGAAACG
* * *
89920818 AAAATTGAAAAACGGAATTTTGAAAATACCTCGGCTTGTGACCCGAGGCCCA
130 AAAATTGAAAAAC-AAATTTTGAAAATACCTCGACATGTGACCCGAGGCCCA
89920870 ACTCATCTCTCGCAATATGAATTGATTTTTTTGAAAAACAGACATTGAAAA
1 ACTCATCTCTCGCAATATGAATTGA--TTTTTGAAAAACAGACATTGAAAA
89920921 TACCTCAGCG
Statistics
Matches: 192, Mismatches: 29, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
176 4 0.02
177 32 0.17
178 10 0.05
179 62 0.32
180 2 0.01
181 82 0.43
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (180 bp):
ACTCATCTCTCGCAATATGAATTGATTTTTGAAAAACAGACATTGAAAAAAAACAGAAATTGAAA
ATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAACATGAGTTGTTTCTTTGAAACGA
AAATTGAAAAACAAATTTTGAAAATACCTCGACATGTGACCCGAGGCCCA
Found at i:89920957 original size:75 final size:75
Alignment explanation
Indices: 89920822--89921137 Score: 377
Period size: 73 Copynumber: 4.2 Consensus size: 75
89920812 TGGAAGAAAA
* * * * * * *
89920822 TTGAAAAACGGAATTTTGAAAATACCTCGGCTTGTGACCCGAGGCCCAACTCATCTCTCGCAATA
1 TTGAAAAACAGAA-ATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATA
* *
89920887 TGAATTGATTTTT
63 CGAGTTGATTTTT
* * * * *
89920900 TTGAAAAACAGACATTGAAAATACCTCAGCGCGTCCCGGGGCTCAACTCGCCTCTCGCAATACGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGA
89920965 GTTGA--TTT
66 GTTGATTTTT
* * *
89920973 TTGAGAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGA
89921038 GTTGATTTTT
66 GTTGATTTTT
* * * *
89921048 TTGAAAGACAGAAATTGAAAATTACCCCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATACG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACG
*
89921113 AGTTAATTTTT
65 AGTTGATTTTT
89921124 TTG-AAAACAGAAAT
1 TTGAAAAACAGAAAT
89921138 AAAAACATCA
Statistics
Matches: 206, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
73 65 0.32
75 63 0.31
76 52 0.25
77 15 0.07
78 11 0.05
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGA
GTTGATTTTT
Found at i:89921519 original size:30 final size:30
Alignment explanation
Indices: 89921475--89921569 Score: 145
Period size: 30 Copynumber: 3.2 Consensus size: 30
89921465 GCCTTTGCCG
* * *
89921475 CCACCAACTTCACTAGTCACACTTGCTCCA
1 CCACCTACTCCACTAGCCACACTTGCTCCA
*
89921505 CCACCTACTCCACTAGCCACACTTACTCCA
1 CCACCTACTCCACTAGCCACACTTGCTCCA
*
89921535 CCACCTACTCCATTAGCCACACTTGCTCCA
1 CCACCTACTCCACTAGCCACACTTGCTCCA
89921565 CCACC
1 CCACC
89921570 ACTTGTACCT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.25, C:0.48, G:0.05, T:0.21
Consensus pattern (30 bp):
CCACCTACTCCACTAGCCACACTTGCTCCA
Found at i:89922059 original size:25 final size:25
Alignment explanation
Indices: 89922019--89922153 Score: 81
Period size: 25 Copynumber: 5.6 Consensus size: 25
89922009 TTTTTTTTTG
*
89922019 ATATTAT-TATAT-TTCTTAATATT
1 ATATTATATATATATTCTTAATACT
* *
89922042 ATATTATATATATATTCTT-TTAAT
1 ATATTATATATATATTCTTAATACT
** *
89922066 ATA-T-TAGGTATATTC-TAATTTCT
1 ATATTATATATATATTCTTAA-TACT
*
89922089 ATATTACGTATATATA-TATT-ATACT
1 ATATTA--TATATATATTCTTAATACT
* *
89922114 ATTTTATGTATATA-TCTTTAATACT
1 ATATTATATATATATTC-TTAATACT
*
89922139 ATATTATTTATATAT
1 ATATTATATATATAT
89922154 ATATTTTTCT
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
21 1 0.01
22 9 0.11
23 21 0.25
24 14 0.17
25 30 0.36
26 2 0.02
27 7 0.08
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (25 bp):
ATATTATATATATATTCTTAATACT
Found at i:89922068 original size:24 final size:23
Alignment explanation
Indices: 89922019--89922071 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
89922009 TTTTTTTTTG
*
89922019 ATATTATTATATTTCTTAATATT
1 ATATTATTATATTTCTTAATAAT
*
89922042 ATATTATATATATATTCTT-TTAAT
1 ATATTAT-TATAT-TTCTTAATAAT
89922066 ATATTA
1 ATATTA
89922072 GGTATATTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 7 0.27
24 14 0.54
25 5 0.19
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
ATATTATTATATTTCTTAATAAT
Found at i:89922127 original size:27 final size:26
Alignment explanation
Indices: 89922087--89922158 Score: 94
Period size: 25 Copynumber: 2.8 Consensus size: 26
89922077 ATTCTAATTT
*
89922087 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
89922112 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
89922137 CTATATTATTTATATATATATT
1 CTATATTATGTATATATATATT
89922159 TTTCTACATG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.90
26 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:89922182 original size:28 final size:28
Alignment explanation
Indices: 89922116--89922199 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 28
89922106 ATTATACTAT
89922116 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
89922145 TTTATATATATATTTTTCTAC-ATGTTA
1 TTTATGTATATATTTTAATACTATATTA
89922172 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
89922199 T
1 T
89922200 GTACACATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
27 12 0.27
28 21 0.47
29 12 0.27
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:89922325 original size:25 final size:24
Alignment explanation
Indices: 89922297--89922352 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
89922287 GTTATATTTT
*
89922297 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
89922322 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
89922345 CACTATTA
1 CACTATTA
89922353 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:89950805 original size:42 final size:42
Alignment explanation
Indices: 89950712--89950806 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
89950702 GAGATCATGT
* **
89950712 GTAAGACCATATCTAGGATATGGCATCGATATTAGACTTCTT
1 GTAAGACCATATCTAGGATATGGCATCGATATAAGACTTCGC
*
89950754 GTAAAACCATATCTAGGATATGGCATCGATATAAGACTTCGC
1 GTAAGACCATATCTAGGATATGGCATCGATATAAGACTTCGC
89950796 GTAAGACCATA
1 GTAAGACCATA
89950807 GTTGGCTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (42 bp):
GTAAGACCATATCTAGGATATGGCATCGATATAAGACTTCGC
Found at i:89954879 original size:49 final size:49
Alignment explanation
Indices: 89954823--89955047 Score: 245
Period size: 49 Copynumber: 4.5 Consensus size: 49
89954813 CTGGTACGCA
* * * *
89954823 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATTCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
* *
89954872 TAGTAGCCTGCACTTAGTACTACACACATGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
* ** *
89954921 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCA-TCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATTC-GGTACACG
* * * * * * * *
89954971 TTGTAGCCTTCACTTAGTACTACATACGTGATCACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATTCGGTACACG
89955022 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
89955048 TGCGACCTCA
Statistics
Matches: 144, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
49 75 0.52
50 37 0.26
51 30 0.21
52 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
Found at i:89959296 original size:26 final size:25
Alignment explanation
Indices: 89959227--89959296 Score: 97
Period size: 24 Copynumber: 2.8 Consensus size: 25
89959217 GAGGAAGTGC
* *
89959227 AAAAGGGCTATGCTCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
89959251 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
89959276 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGC-TTTGCCCCAGTT
89959297 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.39
25 14 0.34
26 11 0.27
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:89959554 original size:31 final size:31
Alignment explanation
Indices: 89959516--89959599 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
89959506 CTATTACAGT
*
89959516 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
89959547 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
89959578 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
89959600 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:89963207 original size:42 final size:42
Alignment explanation
Indices: 89963161--89963316 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
89963151 ACTGAGATTA
* *
89963161 CGTGTAAGACCACATCTGGGATATGGCATCGATATTAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATAAGACTT
*
89963203 CGTGTAAGACCATATCTAGGATATGGCATCGATATAAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATAAGACTT
* * * * **
89963245 TGTGTAAGACCATAGCTGGGCTATTGGCATCGGTACGAGA-TT
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATAAGACTT
* *
89963287 ACATGTAATACCATATCTGGGATATGGCAT
1 -CGTGTAAGACCATATCTGGGATATGGCAT
89963317 TGGAATGATA
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 66 0.68
43 31 0.32
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATAAGACTT
Found at i:89963335 original size:85 final size:84
Alignment explanation
Indices: 89963162--89963316 Score: 204
Period size: 85 Copynumber: 1.8 Consensus size: 84
89963152 CTGAGATTAC
* ** *
89963162 GTGTAAGACCACATCTGGGATATGGCATCGATATTAGACTTCGTGTAAGACCATATCTAGGATAT
1 GTGTAAGACCACAGCTGGGATATGGCATCGATACGAGACTTCATGTAAGACCATATCTAGGATAT
89963227 GGCATCGATATAAGACTTT
66 GGCATCGATATAAGACTTT
* * * * *
89963246 GTGTAAGACCATAGCTGGGCTATTGGCATCGGTACGAGA-TTACATGTAATACCATATCTGGGAT
1 GTGTAAGACCACAGCTGGGATA-TGGCATCGATACGAGACTT-CATGTAAGACCATATCTAGGAT
89963310 ATGGCAT
64 ATGGCAT
89963317 TGGAATGATA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
84 21 0.35
85 39 0.65
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCACAGCTGGGATATGGCATCGATACGAGACTTCATGTAAGACCATATCTAGGATAT
GGCATCGATATAAGACTTT
Found at i:89966285 original size:39 final size:40
Alignment explanation
Indices: 89966184--89966368 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
89966174 TCGAATGATG
* * * *
89966184 TCCGGGCTAAGTCCCGAAGGC-TTTGTTCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
89966223 ATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
89966264 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
89966303 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
89966342 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
89966369 AATGAGTAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.28
40 78 0.66
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:89966391 original size:79 final size:79
Alignment explanation
Indices: 89966237--89966391 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
89966227 GGACTAAGAT
* * **
89966237 CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
89966302 ATCCGAGTTAAGTC
66 ATCCGAGTTAAGTC
* * * *
89966316 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
89966379 TATATCCG-GTTAA
63 TAAATCCGAGTTAA
89966392 ATTTCGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:89969427 original size:9 final size:10
Alignment explanation
Indices: 89969392--89969435 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
89969382 TTCACATCTT
89969392 TCTCTCAAAC
1 TCTCTCAAAC
*
89969402 TCTCTTAAAC
1 TCTCTCAAAC
*
89969412 CCTCTCAAA-
1 TCTCTCAAAC
89969421 TCTCTC-AAC
1 TCTCTCAAAC
89969430 TCTCTC
1 TCTCTC
89969436 GTTTTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 2 0.07
9 11 0.38
10 16 0.55
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (10 bp):
TCTCTCAAAC
Found at i:89971631 original size:27 final size:27
Alignment explanation
Indices: 89971601--89971778 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
89971591 ATATTGAGCC
* *
89971601 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
89971628 CGCACGCTTAGTGCCACGTAATCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
89971655 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
89971683 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
89971710 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
89971737 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
89971764 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
89971779 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 96 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:89971761 original size:54 final size:55
Alignment explanation
Indices: 89971601--89971778 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 55
89971591 ATATTGAGCC
* * * * * * * * *
89971601 CGCACACTCAGTGCTATATAATCA-ACTCGCACGCTTAGTGCCACGTAATCGAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* ** * *
89971655 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* **
89971710 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
*
89971764 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
89971779 GTACAATTTA
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
54 58 0.57
55 44 0.43
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
Found at i:89979618 original size:27 final size:27
Alignment explanation
Indices: 89979588--89979765 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
89979578 ATATTGAGCC
* *
89979588 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
89979615 CGCACGCTTAGTGCCACGTAATCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
89979642 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
89979670 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
89979697 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
89979724 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
89979751 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
89979766 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 96 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Done.